BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017601
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 197 FVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIA 256
FV +++ N G ++ + L +W+L +NG C ++ G D+L S I
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNL---QNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 257 VAGADRTVTIYDPRR--WSALSR-----WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309
G D + +++ + LSR WV C ++ S+D+ I G D V
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS------PSLDAPVIVSGGWDNLVK 179
Query: 310 CGQWRESSKVFAFRGDSNWL 329
V +G +N++
Sbjct: 180 VWDLATGRLVTDLKGHTNYV 199
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGN----IAVAGADRT 263
P +L V QL IWD R + N +I GD + C N +A G D
Sbjct: 203 PEILTVNSIGQLKIWDFRQQGNEPS--QILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319
++I+D R+ + + + E+ + F + +++ D ++ W S+ V
Sbjct: 261 LSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW--HWDASTDV 314
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 46 YIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS 105
YI HL + +M ++ E D I E TP+MDSS + + + I D
Sbjct: 44 YIPVSGHLQRQLALMPEFHRPEMPD-FTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDY 102
Query: 106 SGYMVLGSVDS 116
G+++L D+
Sbjct: 103 DGFVILHGTDT 113
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 46 YIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS 105
YI HL + +M ++ E D I E TP+MDSS + + + I D
Sbjct: 44 YIPVSGHLQRQLALMPEFHRPEMPD-FTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDY 102
Query: 106 SGYMVLGSVDS 116
G+++L D+
Sbjct: 103 DGFVILHGTDT 113
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 196 NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNI 255
+FV+++ + G L+ + +L +WDL G R G D+L S I
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 256 AVAGADRTVTIYD 268
A DRT+ +++
Sbjct: 488 VSASRDRTIKLWN 500
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,408,268
Number of Sequences: 62578
Number of extensions: 475907
Number of successful extensions: 924
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 16
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)