Query 017601
Match_columns 369
No_of_seqs 440 out of 3027
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0264 Nucleosome remodeling 100.0 8.5E-39 1.8E-43 287.5 28.4 325 8-355 43-404 (422)
2 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-38 1.3E-42 279.3 17.9 261 70-353 196-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.3E-37 4.9E-42 272.6 21.2 255 89-368 112-451 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-36 6.3E-41 268.7 17.6 255 89-368 172-430 (459)
5 KOG0265 U5 snRNP-specific prot 100.0 1.1E-34 2.3E-39 248.7 22.0 259 83-368 38-308 (338)
6 KOG0318 WD40 repeat stress pro 100.0 4.4E-34 9.6E-39 260.8 27.2 300 20-369 47-364 (603)
7 KOG0279 G protein beta subunit 100.0 3.3E-33 7.1E-38 237.4 26.6 257 87-364 10-270 (315)
8 KOG0271 Notchless-like WD40 re 100.0 7.8E-34 1.7E-38 250.3 22.1 282 54-353 161-479 (480)
9 KOG0286 G-protein beta subunit 100.0 1.5E-32 3.2E-37 234.8 26.0 257 86-369 49-316 (343)
10 KOG0263 Transcription initiati 100.0 3.4E-32 7.4E-37 259.4 20.6 254 90-358 376-652 (707)
11 KOG0286 G-protein beta subunit 100.0 4E-30 8.8E-35 219.9 27.3 288 46-353 51-343 (343)
12 KOG0279 G protein beta subunit 100.0 7.5E-30 1.6E-34 217.0 25.9 243 88-355 59-313 (315)
13 KOG0284 Polyadenylation factor 100.0 8E-32 1.7E-36 239.4 14.1 239 90-356 94-338 (464)
14 KOG0284 Polyadenylation factor 100.0 9.1E-31 2E-35 232.7 17.8 242 88-357 134-382 (464)
15 KOG0266 WD40 repeat-containing 100.0 3.2E-29 6.8E-34 242.5 30.2 255 90-367 157-420 (456)
16 KOG0295 WD40 repeat-containing 100.0 1E-29 2.2E-34 223.2 21.2 245 88-359 104-368 (406)
17 KOG0315 G-protein beta subunit 100.0 5.2E-29 1.1E-33 208.8 24.2 252 91-367 39-299 (311)
18 KOG0295 WD40 repeat-containing 100.0 3.4E-29 7.4E-34 219.9 22.6 254 74-354 133-405 (406)
19 KOG0319 WD40-repeat-containing 100.0 5.6E-29 1.2E-33 235.6 24.2 250 88-357 361-621 (775)
20 KOG0291 WD40-repeat-containing 100.0 9.4E-29 2E-33 234.4 25.6 275 58-358 315-615 (893)
21 KOG0285 Pleiotropic regulator 100.0 2.6E-29 5.6E-34 220.2 20.2 244 88-359 147-393 (460)
22 KOG0277 Peroxisomal targeting 100.0 4.1E-29 8.9E-34 210.0 20.5 242 91-354 59-308 (311)
23 KOG0263 Transcription initiati 100.0 7.1E-30 1.5E-34 243.7 17.8 204 86-315 445-650 (707)
24 KOG0277 Peroxisomal targeting 100.0 6.2E-29 1.3E-33 208.9 19.6 253 96-367 12-277 (311)
25 KOG0273 Beta-transducin family 100.0 4.7E-28 1E-32 219.0 25.5 239 92-359 235-486 (524)
26 KOG0276 Vesicle coat complex C 100.0 7.9E-29 1.7E-33 230.6 21.1 246 88-358 9-260 (794)
27 KOG0273 Beta-transducin family 100.0 1.2E-27 2.6E-32 216.3 23.8 242 86-355 270-523 (524)
28 KOG0319 WD40-repeat-containing 100.0 5.2E-28 1.1E-32 229.1 22.0 257 88-368 319-589 (775)
29 PLN00181 protein SPA1-RELATED; 100.0 1E-26 2.3E-31 240.2 33.0 252 88-357 479-740 (793)
30 KOG0281 Beta-TrCP (transducin 100.0 1.9E-28 4.1E-33 214.1 14.3 268 52-358 199-480 (499)
31 KOG0281 Beta-TrCP (transducin 100.0 6.2E-29 1.3E-33 217.1 10.3 234 91-360 196-433 (499)
32 KOG0266 WD40 repeat-containing 100.0 1.2E-26 2.7E-31 224.4 27.0 279 52-355 161-454 (456)
33 KOG0282 mRNA splicing factor [ 100.0 4.9E-28 1.1E-32 219.6 15.8 244 85-353 207-503 (503)
34 KOG0296 Angio-associated migra 100.0 2.4E-26 5.1E-31 202.2 25.1 277 48-355 62-398 (399)
35 KOG0316 Conserved WD40 repeat- 100.0 6.5E-27 1.4E-31 194.8 20.0 242 88-358 13-260 (307)
36 KOG0313 Microtubule binding pr 100.0 2.3E-26 5E-31 203.1 23.1 251 84-355 136-418 (423)
37 cd00200 WD40 WD40 domain, foun 100.0 3.1E-25 6.6E-30 199.1 29.5 244 88-358 5-252 (289)
38 KOG0283 WD40 repeat-containing 99.9 4.5E-26 9.7E-31 219.4 24.2 252 90-356 265-577 (712)
39 PLN00181 protein SPA1-RELATED; 99.9 3.6E-25 7.8E-30 228.8 32.8 281 49-354 482-792 (793)
40 KOG0315 G-protein beta subunit 99.9 1.2E-25 2.7E-30 188.6 22.9 259 45-326 35-300 (311)
41 KOG0276 Vesicle coat complex C 99.9 2.1E-26 4.5E-31 214.5 20.1 203 151-369 16-228 (794)
42 cd00200 WD40 WD40 domain, foun 99.9 1.2E-24 2.6E-29 195.2 29.4 239 88-353 47-289 (289)
43 KOG0265 U5 snRNP-specific prot 99.9 1.9E-25 4.1E-30 192.0 22.6 277 46-351 43-334 (338)
44 KOG0645 WD40 repeat protein [G 99.9 8.3E-25 1.8E-29 185.7 26.2 208 88-314 10-225 (312)
45 KOG0302 Ribosome Assembly prot 99.9 1.4E-25 3E-30 198.1 20.1 253 87-348 146-432 (440)
46 KOG0292 Vesicle coat complex C 99.9 1.4E-25 3.1E-30 216.0 21.4 240 92-358 9-283 (1202)
47 KOG0291 WD40-repeat-containing 99.9 1.1E-24 2.4E-29 206.9 26.9 238 93-358 308-553 (893)
48 KOG0296 Angio-associated migra 99.9 4.7E-25 1E-29 194.0 22.5 260 82-368 54-368 (399)
49 KOG0278 Serine/threonine kinas 99.9 4.5E-26 9.8E-31 191.3 14.5 242 87-359 54-301 (334)
50 PTZ00421 coronin; Provisional 99.9 2.6E-24 5.7E-29 208.1 28.4 201 149-358 76-293 (493)
51 KOG0318 WD40 repeat stress pro 99.9 3E-24 6.4E-29 196.8 26.7 258 88-368 55-320 (603)
52 KOG0313 Microtubule binding pr 99.9 4.2E-25 9.1E-30 195.2 20.2 259 84-367 97-388 (423)
53 KOG0268 Sof1-like rRNA process 99.9 4.4E-26 9.5E-31 200.3 13.8 244 87-357 61-347 (433)
54 KOG0274 Cdc4 and related F-box 99.9 9.7E-25 2.1E-29 211.7 24.4 238 87-359 244-486 (537)
55 KOG0285 Pleiotropic regulator 99.9 1.2E-24 2.5E-29 191.1 22.2 275 53-355 154-439 (460)
56 PTZ00420 coronin; Provisional 99.9 3.8E-24 8.3E-29 208.3 28.0 223 114-357 50-295 (568)
57 KOG0293 WD40 repeat-containing 99.9 2.9E-25 6.4E-30 198.0 17.7 287 45-356 219-514 (519)
58 KOG1407 WD40 repeat protein [F 99.9 2.9E-24 6.3E-29 181.5 21.6 247 87-359 15-265 (313)
59 KOG0310 Conserved WD40 repeat- 99.9 1E-23 2.2E-28 191.8 26.8 245 89-357 65-311 (487)
60 KOG0274 Cdc4 and related F-box 99.9 1.7E-24 3.6E-29 210.1 22.9 241 91-366 207-451 (537)
61 KOG0293 WD40 repeat-containing 99.9 1E-24 2.2E-29 194.6 19.2 256 88-368 220-482 (519)
62 KOG0282 mRNA splicing factor [ 99.9 1.4E-25 3.1E-30 203.6 14.1 204 150-367 216-473 (503)
63 PTZ00421 coronin; Provisional 99.9 3.6E-23 7.8E-28 200.2 27.9 220 88-323 71-299 (493)
64 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.8E-27 176.0 27.3 240 91-359 13-266 (311)
65 KOG4283 Transcription-coupled 99.9 1.1E-23 2.3E-28 180.9 20.3 216 88-316 39-278 (397)
66 KOG0306 WD40-repeat-containing 99.9 2.7E-23 5.8E-28 197.5 23.1 257 83-368 364-634 (888)
67 KOG0288 WD40 repeat protein Ti 99.9 3.3E-24 7.2E-29 191.3 13.7 244 88-360 171-422 (459)
68 KOG0772 Uncharacterized conser 99.9 2E-23 4.3E-28 191.0 18.8 256 86-358 161-448 (641)
69 KOG0316 Conserved WD40 repeat- 99.9 5.4E-23 1.2E-27 171.5 19.5 205 148-369 17-226 (307)
70 KOG0640 mRNA cleavage stimulat 99.9 4E-23 8.7E-28 178.5 19.1 296 35-355 119-426 (430)
71 KOG0641 WD40 repeat protein [G 99.9 2.4E-21 5.3E-26 160.8 28.8 245 89-354 86-348 (350)
72 KOG0292 Vesicle coat complex C 99.9 8.7E-24 1.9E-28 203.8 16.4 202 153-369 14-251 (1202)
73 KOG4328 WD40 protein [Function 99.9 7.4E-23 1.6E-27 184.9 21.3 254 90-358 184-453 (498)
74 KOG0275 Conserved WD40 repeat- 99.9 1.9E-23 4.1E-28 181.4 16.3 255 88-360 209-472 (508)
75 KOG0640 mRNA cleavage stimulat 99.9 4.9E-23 1.1E-27 177.9 17.8 253 88-359 108-387 (430)
76 KOG0645 WD40 repeat protein [G 99.9 6.3E-22 1.4E-26 168.2 23.7 196 153-356 19-226 (312)
77 PTZ00420 coronin; Provisional 99.9 7.3E-22 1.6E-26 192.4 27.4 186 168-359 50-252 (568)
78 KOG0308 Conserved WD40 repeat- 99.9 4.1E-23 8.9E-28 193.5 17.5 248 90-357 19-287 (735)
79 KOG0305 Anaphase promoting com 99.9 5E-22 1.1E-26 186.8 24.8 239 92-357 217-463 (484)
80 KOG0269 WD40 repeat-containing 99.9 5.3E-23 1.1E-27 196.2 18.3 249 93-359 88-344 (839)
81 KOG0264 Nucleosome remodeling 99.9 7.6E-23 1.7E-27 184.8 18.4 205 148-357 124-349 (422)
82 KOG0278 Serine/threonine kinas 99.9 1.2E-22 2.5E-27 170.8 15.6 204 85-317 93-300 (334)
83 KOG0306 WD40-repeat-containing 99.9 2.8E-21 6E-26 183.9 26.5 236 93-355 413-664 (888)
84 KOG0973 Histone transcription 99.9 3.8E-21 8.2E-26 190.0 26.3 250 88-358 65-358 (942)
85 KOG0289 mRNA splicing factor [ 99.9 4.6E-21 1E-25 172.3 24.2 261 68-354 238-505 (506)
86 KOG0301 Phospholipase A2-activ 99.9 8.7E-22 1.9E-26 185.9 20.4 239 87-355 9-249 (745)
87 KOG0288 WD40 repeat protein Ti 99.9 6.1E-22 1.3E-26 176.9 17.7 236 88-353 215-459 (459)
88 KOG0294 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 163.8 24.8 240 87-358 38-284 (362)
89 KOG0301 Phospholipase A2-activ 99.9 1.9E-21 4E-26 183.7 21.7 235 86-355 51-288 (745)
90 KOG0275 Conserved WD40 repeat- 99.9 2.3E-23 5E-28 180.9 7.7 159 202-364 220-386 (508)
91 KOG4283 Transcription-coupled 99.9 9.3E-22 2E-26 169.0 17.3 204 149-361 44-282 (397)
92 KOG0289 mRNA splicing factor [ 99.9 5.3E-21 1.1E-25 171.9 22.5 241 93-357 220-464 (506)
93 KOG0307 Vesicle coat complex C 99.9 1.3E-22 2.8E-27 201.2 13.2 258 90-358 62-330 (1049)
94 KOG0772 Uncharacterized conser 99.9 2.9E-21 6.2E-26 176.9 20.4 292 44-352 160-484 (641)
95 KOG0302 Ribosome Assembly prot 99.9 5.1E-21 1.1E-25 169.4 20.3 210 84-308 203-433 (440)
96 KOG0310 Conserved WD40 repeat- 99.9 6.9E-21 1.5E-25 173.5 20.6 278 6-312 11-307 (487)
97 KOG0269 WD40 repeat-containing 99.9 9.6E-22 2.1E-26 187.6 15.4 203 153-364 92-305 (839)
98 KOG0300 WD40 repeat-containing 99.9 8.2E-21 1.8E-25 164.7 18.9 245 88-358 144-431 (481)
99 KOG0641 WD40 repeat protein [G 99.9 1.4E-19 3E-24 150.4 24.8 254 88-356 28-304 (350)
100 KOG0643 Translation initiation 99.9 4.5E-20 9.7E-25 156.7 22.3 246 86-356 4-318 (327)
101 KOG1332 Vesicle coat complex C 99.9 3.8E-21 8.2E-26 161.3 15.1 250 89-356 8-287 (299)
102 KOG0270 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 169.4 19.8 247 107-364 191-458 (463)
103 KOG1007 WD repeat protein TSSC 99.9 1.1E-19 2.4E-24 155.9 23.8 255 88-356 59-362 (370)
104 KOG0647 mRNA export protein (c 99.9 1.8E-19 3.8E-24 155.5 23.5 245 90-357 25-283 (347)
105 KOG0639 Transducin-like enhanc 99.9 2.3E-20 5E-25 170.5 18.9 252 84-354 411-703 (705)
106 KOG0300 WD40 repeat-containing 99.9 2.8E-20 6E-25 161.4 18.3 258 84-358 182-479 (481)
107 KOG0283 WD40 repeat-containing 99.9 7.1E-20 1.5E-24 176.9 20.9 155 206-369 379-545 (712)
108 KOG1407 WD40 repeat protein [F 99.9 4.2E-19 9.2E-24 150.4 23.0 235 86-346 58-293 (313)
109 KOG0308 Conserved WD40 repeat- 99.8 3.1E-20 6.7E-25 174.4 16.2 268 66-355 42-327 (735)
110 KOG0299 U3 snoRNP-associated p 99.8 3E-19 6.5E-24 161.8 21.6 251 88-358 138-413 (479)
111 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.7E-18 5.9E-23 156.9 28.5 240 93-359 31-283 (300)
112 KOG2445 Nuclear pore complex c 99.8 3.8E-19 8.2E-24 153.9 21.1 253 89-355 10-318 (361)
113 KOG0973 Histone transcription 99.8 4.4E-19 9.6E-24 175.5 23.8 253 91-359 12-316 (942)
114 KOG1036 Mitotic spindle checkp 99.8 1.1E-18 2.5E-23 151.0 23.3 241 89-359 10-266 (323)
115 KOG1274 WD40 repeat protein [G 99.8 7.6E-19 1.7E-23 170.9 24.6 242 88-357 9-264 (933)
116 KOG2096 WD40 repeat protein [G 99.8 7.6E-19 1.6E-23 152.7 21.3 250 88-359 82-364 (420)
117 KOG0299 U3 snoRNP-associated p 99.8 1.1E-18 2.4E-23 158.2 22.6 238 90-353 200-454 (479)
118 KOG1036 Mitotic spindle checkp 99.8 1.8E-18 3.9E-23 149.8 22.4 231 87-345 49-294 (323)
119 KOG0305 Anaphase promoting com 99.8 5.5E-19 1.2E-23 166.4 20.7 200 91-316 259-463 (484)
120 KOG0646 WD40 repeat protein [G 99.8 5.3E-19 1.1E-23 160.5 18.2 211 88-322 77-315 (476)
121 KOG0267 Microtubule severing p 99.8 1.3E-20 2.9E-25 178.7 7.6 186 163-358 42-229 (825)
122 KOG1446 Histone H3 (Lys4) meth 99.8 2.5E-17 5.3E-22 143.3 27.1 239 91-356 55-304 (311)
123 KOG0267 Microtubule severing p 99.8 2.3E-20 5E-25 177.1 8.4 233 88-347 24-260 (825)
124 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 3.8E-23 158.1 18.9 253 95-368 37-293 (673)
125 KOG1408 WD40 repeat protein [F 99.8 1.3E-18 2.7E-23 165.1 18.2 250 87-356 454-714 (1080)
126 KOG0647 mRNA export protein (c 99.8 2.6E-18 5.7E-23 148.4 18.0 231 88-346 68-315 (347)
127 KOG2919 Guanine nucleotide-bin 99.8 1.6E-18 3.6E-23 150.9 16.5 254 95-359 52-331 (406)
128 KOG0321 WD40 repeat-containing 99.8 1.1E-17 2.4E-22 157.1 23.0 254 86-361 94-397 (720)
129 KOG0270 WD40 repeat-containing 99.8 1.3E-18 2.9E-23 157.1 16.0 186 161-357 192-406 (463)
130 KOG1332 Vesicle coat complex C 99.8 1.9E-18 4E-23 145.2 15.4 217 84-315 48-287 (299)
131 KOG0321 WD40 repeat-containing 99.8 5.5E-18 1.2E-22 159.1 20.1 259 98-368 55-360 (720)
132 KOG0268 Sof1-like rRNA process 99.8 5.1E-19 1.1E-23 156.0 11.8 195 150-359 68-306 (433)
133 KOG0639 Transducin-like enhanc 99.8 1.3E-18 2.8E-23 159.2 12.4 199 151-356 422-623 (705)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.2E-16 9.1E-21 142.4 28.1 225 109-359 2-241 (300)
135 KOG0307 Vesicle coat complex C 99.8 2.5E-18 5.5E-23 171.0 13.6 212 86-315 110-328 (1049)
136 KOG0646 WD40 repeat protein [G 99.8 2.6E-17 5.7E-22 149.6 18.8 220 118-359 61-311 (476)
137 KOG0643 Translation initiation 99.8 1.5E-16 3.3E-21 135.4 21.2 192 151-358 13-223 (327)
138 KOG0294 WD40 repeat-containing 99.8 1.6E-16 3.4E-21 138.2 21.5 207 148-369 43-250 (362)
139 KOG0303 Actin-binding protein 99.8 1.3E-16 2.7E-21 142.5 20.5 195 151-358 84-297 (472)
140 KOG2055 WD40 repeat protein [G 99.8 9.1E-17 2E-21 145.9 19.5 199 147-356 212-418 (514)
141 KOG2106 Uncharacterized conser 99.8 7.4E-16 1.6E-20 141.4 25.6 212 81-314 277-521 (626)
142 KOG1539 WD repeat protein [Gen 99.8 1.6E-16 3.4E-21 153.5 21.5 230 110-355 414-648 (910)
143 KOG4328 WD40 protein [Function 99.8 2.3E-16 4.9E-21 143.2 21.3 252 86-355 228-495 (498)
144 KOG2048 WD40 repeat protein [G 99.7 9.6E-16 2.1E-20 145.1 24.2 244 93-359 26-279 (691)
145 KOG2055 WD40 repeat protein [G 99.7 4.4E-16 9.5E-21 141.5 20.5 239 92-355 257-512 (514)
146 KOG1274 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 146.8 26.2 198 91-315 55-263 (933)
147 KOG2096 WD40 repeat protein [G 99.7 4.1E-16 8.9E-21 135.8 18.4 193 150-355 88-308 (420)
148 KOG2048 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 144.3 22.6 194 151-358 28-236 (691)
149 KOG0290 Conserved WD40 repeat- 99.7 8.2E-16 1.8E-20 132.4 19.2 218 89-315 93-319 (364)
150 KOG2445 Nuclear pore complex c 99.7 6E-16 1.3E-20 134.2 18.4 228 88-324 55-331 (361)
151 KOG1188 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 136.3 16.9 189 162-359 41-246 (376)
152 KOG1007 WD repeat protein TSSC 99.7 1E-15 2.3E-20 131.7 17.6 208 90-315 121-362 (370)
153 KOG1408 WD40 repeat protein [F 99.7 6.8E-16 1.5E-20 146.8 17.8 242 53-315 462-714 (1080)
154 KOG0650 WD40 repeat nucleolar 99.7 3.8E-15 8.2E-20 139.3 20.6 319 8-352 365-732 (733)
155 KOG1539 WD repeat protein [Gen 99.7 2.6E-14 5.6E-19 138.3 26.9 264 44-355 88-365 (910)
156 KOG1034 Transcriptional repres 99.7 2.3E-15 5.1E-20 131.6 17.4 156 151-314 41-211 (385)
157 KOG1273 WD40 repeat protein [G 99.7 1.9E-14 4.2E-19 125.3 22.9 284 33-359 28-326 (405)
158 KOG2106 Uncharacterized conser 99.7 1.4E-13 3E-18 126.6 28.9 236 92-360 246-482 (626)
159 KOG0290 Conserved WD40 repeat- 99.7 1.2E-14 2.6E-19 125.3 20.4 199 151-357 99-320 (364)
160 KOG1587 Cytoplasmic dynein int 99.7 9.2E-15 2E-19 141.6 21.6 252 91-355 241-516 (555)
161 COG2319 FOG: WD40 repeat [Gene 99.7 2.2E-13 4.8E-18 128.3 30.9 250 88-359 61-318 (466)
162 KOG4378 Nuclear protein COP1 [ 99.7 4E-15 8.6E-20 136.4 17.5 229 109-358 5-242 (673)
163 KOG1063 RNA polymerase II elon 99.7 1.1E-14 2.4E-19 138.3 20.7 254 88-358 263-605 (764)
164 KOG1188 WD40 repeat protein [G 99.7 3.6E-15 7.9E-20 131.0 16.3 188 109-315 41-243 (376)
165 KOG1034 Transcriptional repres 99.7 7.3E-14 1.6E-18 122.4 24.2 252 89-355 35-383 (385)
166 KOG1445 Tumor-specific antigen 99.7 1.1E-15 2.4E-20 143.6 13.7 191 162-357 592-800 (1012)
167 KOG0303 Actin-binding protein 99.7 8.4E-15 1.8E-19 130.9 17.5 211 88-317 77-297 (472)
168 KOG1445 Tumor-specific antigen 99.6 6.6E-15 1.4E-19 138.5 17.2 226 114-357 599-846 (1012)
169 PRK11028 6-phosphogluconolacto 99.6 3.9E-13 8.5E-18 125.4 28.9 246 90-355 32-304 (330)
170 KOG1063 RNA polymerase II elon 99.6 1.1E-13 2.3E-18 131.7 24.3 294 45-357 262-650 (764)
171 KOG0650 WD40 repeat nucleolar 99.6 6.1E-14 1.3E-18 131.4 19.2 237 88-353 396-678 (733)
172 KOG1273 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 121.6 18.3 247 95-366 26-290 (405)
173 KOG3881 Uncharacterized conser 99.6 1.4E-13 3E-18 123.2 18.9 206 91-319 104-325 (412)
174 KOG1517 Guanine nucleotide bin 99.6 2.5E-13 5.5E-18 134.5 22.2 240 97-357 1069-1335(1387)
175 KOG1240 Protein kinase contain 99.6 3.7E-13 8.1E-18 135.1 23.7 261 85-359 1041-1338(1431)
176 KOG4227 WD40 repeat protein [G 99.6 2E-13 4.4E-18 122.1 19.2 254 88-356 52-323 (609)
177 KOG2919 Guanine nucleotide-bin 99.6 2.2E-13 4.7E-18 119.2 17.7 209 153-367 54-293 (406)
178 KOG0322 G-protein beta subunit 99.6 6.8E-14 1.5E-18 119.2 13.7 243 88-354 10-322 (323)
179 KOG1334 WD40 repeat protein [G 99.6 6.7E-14 1.4E-18 128.3 14.6 254 88-358 138-427 (559)
180 KOG0642 Cell-cycle nuclear pro 99.6 6.4E-14 1.4E-18 130.5 14.2 226 84-326 336-573 (577)
181 KOG0649 WD40 repeat protein [G 99.6 1.7E-12 3.6E-17 109.6 21.2 233 94-355 12-274 (325)
182 KOG1272 WD40-repeat-containing 99.5 2.1E-14 4.5E-19 130.9 9.7 225 96-353 133-360 (545)
183 KOG1517 Guanine nucleotide bin 99.5 9.3E-13 2E-17 130.6 20.8 254 93-358 1110-1384(1387)
184 COG2319 FOG: WD40 repeat [Gene 99.5 3.8E-12 8.2E-17 119.9 24.1 198 151-359 68-275 (466)
185 KOG2110 Uncharacterized conser 99.5 1.6E-11 3.4E-16 109.5 25.2 184 108-315 58-249 (391)
186 KOG2394 WD40 protein DMR-N9 [G 99.5 6.2E-13 1.3E-17 123.3 15.8 184 149-357 220-454 (636)
187 KOG1310 WD40 repeat protein [G 99.5 6.6E-13 1.4E-17 123.4 15.0 219 87-322 45-311 (758)
188 KOG1009 Chromatin assembly com 99.5 2.2E-13 4.7E-18 122.4 11.4 146 208-356 27-196 (434)
189 PRK11028 6-phosphogluconolacto 99.5 4.2E-11 9.2E-16 111.7 27.6 230 113-357 7-260 (330)
190 KOG0644 Uncharacterized conser 99.5 1.3E-13 2.7E-18 133.6 9.8 245 88-358 186-471 (1113)
191 KOG2110 Uncharacterized conser 99.5 1.9E-11 4.1E-16 109.0 22.2 235 93-358 6-251 (391)
192 KOG0642 Cell-cycle nuclear pro 99.5 8.1E-13 1.8E-17 123.2 13.0 253 86-359 288-565 (577)
193 KOG1009 Chromatin assembly com 99.4 1.1E-12 2.3E-17 118.0 12.6 158 151-315 16-196 (434)
194 KOG1538 Uncharacterized conser 99.4 3.4E-12 7.5E-17 121.1 16.3 268 35-356 19-294 (1081)
195 KOG2321 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 115.9 19.1 257 84-355 43-343 (703)
196 KOG0771 Prolactin regulatory e 99.4 5.9E-12 1.3E-16 113.9 15.3 196 96-315 148-355 (398)
197 PRK01742 tolB translocation pr 99.4 3.6E-11 7.9E-16 116.1 21.8 209 117-355 183-401 (429)
198 KOG1587 Cytoplasmic dynein int 99.4 4.7E-11 1E-15 116.0 22.3 216 88-315 287-517 (555)
199 PF08662 eIF2A: Eukaryotic tra 99.4 3.5E-11 7.5E-16 103.1 19.1 153 153-321 10-185 (194)
200 PF08662 eIF2A: Eukaryotic tra 99.4 2.3E-11 4.9E-16 104.3 17.8 131 217-355 37-179 (194)
201 KOG0649 WD40 repeat protein [G 99.4 4.7E-10 1E-14 95.0 24.3 242 84-352 54-313 (325)
202 KOG1538 Uncharacterized conser 99.4 1.5E-11 3.3E-16 116.8 16.4 225 94-354 14-251 (1081)
203 KOG2394 WD40 protein DMR-N9 [G 99.4 1.7E-11 3.7E-16 113.9 16.0 109 203-316 298-454 (636)
204 PRK01742 tolB translocation pr 99.4 2.5E-11 5.4E-16 117.2 18.1 207 88-326 199-415 (429)
205 KOG0771 Prolactin regulatory e 99.4 1.8E-11 3.8E-16 110.8 14.2 193 153-356 149-355 (398)
206 KOG2111 Uncharacterized conser 99.3 2E-10 4.4E-15 100.6 19.9 153 151-315 97-257 (346)
207 KOG0322 G-protein beta subunit 99.3 6.3E-11 1.4E-15 101.3 15.6 146 161-313 164-322 (323)
208 KOG1354 Serine/threonine prote 99.3 5.2E-11 1.1E-15 105.3 15.0 253 93-364 26-368 (433)
209 KOG1524 WD40 repeat-containing 99.3 1.1E-10 2.4E-15 108.5 16.1 239 89-354 11-285 (737)
210 KOG0974 WD-repeat protein WDR6 99.3 6.9E-11 1.5E-15 117.6 15.6 187 161-358 99-291 (967)
211 KOG1523 Actin-related protein 99.3 4.1E-10 8.9E-15 98.8 18.5 206 93-316 11-238 (361)
212 KOG1523 Actin-related protein 99.3 2.1E-10 4.5E-15 100.6 16.4 200 151-358 13-239 (361)
213 KOG2111 Uncharacterized conser 99.3 4E-09 8.7E-14 92.6 24.1 174 172-358 75-259 (346)
214 KOG4227 WD40 repeat protein [G 99.3 1.4E-10 3E-15 104.1 14.4 166 191-360 55-230 (609)
215 KOG0644 Uncharacterized conser 99.3 2.7E-12 5.9E-17 124.5 3.7 100 205-314 200-300 (1113)
216 KOG1524 WD40 repeat-containing 99.3 3.5E-10 7.6E-15 105.3 17.0 180 109-315 76-256 (737)
217 KOG2139 WD40 repeat protein [G 99.2 1E-09 2.3E-14 97.8 17.5 195 151-353 101-309 (445)
218 KOG1963 WD40 repeat protein [G 99.2 8.6E-09 1.9E-13 101.3 25.4 247 90-357 249-540 (792)
219 PRK03629 tolB translocation pr 99.2 1.1E-08 2.5E-13 98.6 25.5 211 119-356 180-407 (429)
220 KOG1310 WD40 repeat protein [G 99.2 6.6E-11 1.4E-15 110.3 9.3 123 234-358 44-181 (758)
221 KOG2321 WD40 repeat protein [G 99.2 2E-09 4.3E-14 101.1 17.8 199 152-359 55-306 (703)
222 KOG3881 Uncharacterized conser 99.2 2E-09 4.3E-14 96.8 16.9 189 162-359 116-324 (412)
223 KOG1334 WD40 repeat protein [G 99.2 6.7E-10 1.5E-14 102.4 13.9 271 73-357 166-468 (559)
224 KOG0280 Uncharacterized conser 99.1 8E-09 1.7E-13 89.9 19.2 250 92-358 69-336 (339)
225 KOG1963 WD40 repeat protein [G 99.1 1.6E-08 3.5E-13 99.4 22.5 249 87-357 52-324 (792)
226 PRK05137 tolB translocation pr 99.1 5.2E-08 1.1E-12 94.4 26.2 194 151-359 204-416 (435)
227 KOG0974 WD-repeat protein WDR6 99.1 2E-09 4.3E-14 107.4 15.5 190 109-315 100-289 (967)
228 KOG1272 WD40-repeat-containing 99.1 1.5E-10 3.2E-15 106.0 6.8 189 153-358 134-326 (545)
229 PRK04922 tolB translocation pr 99.1 2.8E-08 6.2E-13 96.1 23.1 192 151-357 206-413 (433)
230 KOG2139 WD40 repeat protein [G 99.1 4.5E-09 9.7E-14 93.8 15.6 183 93-302 99-298 (445)
231 PRK03629 tolB translocation pr 99.1 4.8E-08 1E-12 94.3 23.9 206 90-326 196-417 (429)
232 KOG0280 Uncharacterized conser 99.1 7.6E-09 1.7E-13 90.0 16.1 146 213-361 91-247 (339)
233 KOG4547 WD40 repeat-containing 99.1 4.6E-08 1E-12 92.4 22.5 191 108-315 5-221 (541)
234 PRK02889 tolB translocation pr 99.1 1.8E-08 3.9E-13 97.3 20.2 197 89-313 192-402 (427)
235 PLN02919 haloacid dehalogenase 99.0 4.1E-07 8.9E-12 96.5 31.0 196 152-359 627-892 (1057)
236 PRK05137 tolB translocation pr 99.0 9.6E-08 2.1E-12 92.5 23.6 175 171-358 181-369 (435)
237 KOG4714 Nucleoporin [Nuclear s 99.0 1.3E-09 2.8E-14 93.2 8.9 180 162-353 102-316 (319)
238 PRK04922 tolB translocation pr 99.0 5.3E-08 1.1E-12 94.3 21.4 174 172-359 184-372 (433)
239 KOG4547 WD40 repeat-containing 99.0 2.6E-08 5.7E-13 94.1 18.1 140 210-356 73-221 (541)
240 KOG4497 Uncharacterized conser 99.0 5.8E-08 1.3E-12 85.8 18.8 238 92-357 48-393 (447)
241 KOG1240 Protein kinase contain 99.0 3.4E-08 7.4E-13 100.3 19.5 200 151-358 1051-1276(1431)
242 KOG3914 WD repeat protein WDR4 99.0 9.2E-09 2E-13 93.0 12.6 154 154-322 68-231 (390)
243 PRK02889 tolB translocation pr 99.0 1.3E-07 2.9E-12 91.3 21.4 176 171-359 175-364 (427)
244 KOG0309 Conserved WD40 repeat- 98.9 6.2E-09 1.4E-13 100.5 11.5 237 96-356 71-340 (1081)
245 KOG2315 Predicted translation 98.9 2.7E-07 5.8E-12 86.9 21.1 230 96-356 129-391 (566)
246 KOG3914 WD repeat protein WDR4 98.9 1.9E-08 4E-13 91.1 13.0 149 206-359 72-227 (390)
247 PF02239 Cytochrom_D1: Cytochr 98.9 2.8E-07 6.1E-12 86.9 21.6 240 96-359 40-351 (369)
248 PRK01029 tolB translocation pr 98.9 5E-07 1.1E-11 87.1 23.8 198 153-359 189-407 (428)
249 TIGR02800 propeller_TolB tol-p 98.9 8.8E-07 1.9E-11 85.3 25.2 190 152-356 193-398 (417)
250 KOG4497 Uncharacterized conser 98.9 2.3E-08 4.9E-13 88.4 12.5 217 98-353 14-238 (447)
251 PF02239 Cytochrom_D1: Cytochr 98.9 1.6E-06 3.4E-11 81.8 25.1 186 163-359 7-206 (369)
252 KOG4190 Uncharacterized conser 98.9 1.3E-08 2.8E-13 95.5 9.9 244 88-353 731-986 (1034)
253 KOG2695 WD40 repeat protein [G 98.9 5.8E-09 1.3E-13 92.6 7.2 138 211-358 228-379 (425)
254 KOG1354 Serine/threonine prote 98.9 2.3E-07 4.9E-12 82.6 16.9 218 89-316 81-361 (433)
255 COG5170 CDC55 Serine/threonine 98.8 1.2E-07 2.7E-12 83.2 15.0 246 91-354 25-366 (460)
256 TIGR02800 propeller_TolB tol-p 98.8 3.4E-07 7.4E-12 88.2 19.7 148 203-358 197-357 (417)
257 KOG1064 RAVE (regulator of V-A 98.8 1.8E-08 3.9E-13 105.6 10.9 180 153-357 2213-2400(2439)
258 PLN02919 haloacid dehalogenase 98.8 9E-06 1.9E-10 86.5 31.3 156 153-318 687-892 (1057)
259 PF10282 Lactonase: Lactonase, 98.8 1.2E-05 2.5E-10 75.5 26.8 250 96-358 40-327 (345)
260 PF00400 WD40: WD domain, G-be 98.8 2.5E-08 5.5E-13 61.6 6.0 39 272-312 1-39 (39)
261 KOG4532 WD40-like repeat conta 98.8 1.5E-06 3.3E-11 75.0 18.4 212 96-322 71-290 (344)
262 PRK01029 tolB translocation pr 98.8 3.1E-06 6.7E-11 81.6 23.0 209 92-322 184-411 (428)
263 PRK00178 tolB translocation pr 98.7 6.1E-06 1.3E-10 79.9 23.9 197 89-315 195-407 (430)
264 COG2706 3-carboxymuconate cycl 98.7 5.4E-05 1.2E-09 68.3 27.2 262 81-355 28-321 (346)
265 KOG1409 Uncharacterized conser 98.7 3.1E-06 6.7E-11 75.5 19.0 197 93-315 69-271 (404)
266 PRK00178 tolB translocation pr 98.7 4.4E-06 9.6E-11 80.9 21.8 148 203-359 206-367 (430)
267 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.4E-12 84.6 8.4 145 169-323 231-385 (425)
268 PRK04792 tolB translocation pr 98.6 1.2E-05 2.5E-10 78.2 23.2 189 152-356 221-426 (448)
269 PRK04792 tolB translocation pr 98.6 7.6E-06 1.6E-10 79.5 21.8 147 203-358 225-385 (448)
270 KOG1064 RAVE (regulator of V-A 98.6 1.9E-07 4E-12 98.3 10.9 218 93-348 2209-2439(2439)
271 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.0001 2.2E-09 68.4 27.4 199 153-359 51-334 (352)
272 KOG0309 Conserved WD40 repeat- 98.6 4.6E-07 9.9E-12 87.9 11.3 199 150-357 26-234 (1081)
273 PF00400 WD40: WD domain, G-be 98.5 2.2E-07 4.7E-12 57.3 5.5 37 231-268 2-39 (39)
274 KOG1409 Uncharacterized conser 98.5 5.2E-06 1.1E-10 74.1 16.0 244 89-359 21-274 (404)
275 KOG1912 WD40 repeat protein [G 98.5 2.7E-05 5.8E-10 76.5 21.8 293 30-361 17-370 (1062)
276 PF11768 DUF3312: Protein of u 98.5 0.00014 3.1E-09 69.8 26.1 118 186-315 202-330 (545)
277 TIGR03300 assembly_YfgL outer 98.4 5.9E-05 1.3E-09 71.7 21.5 183 163-359 147-342 (377)
278 PF15492 Nbas_N: Neuroblastoma 98.4 0.00018 3.9E-09 63.2 22.0 171 149-323 44-268 (282)
279 KOG2315 Predicted translation 98.4 6.6E-05 1.4E-09 71.2 20.5 200 90-315 163-391 (566)
280 PF13360 PQQ_2: PQQ-like domai 98.4 0.00018 3.8E-09 63.5 22.2 179 163-359 38-234 (238)
281 PF04762 IKI3: IKI3 family; I 98.3 0.00041 8.8E-09 72.9 26.6 196 152-357 213-458 (928)
282 KOG4190 Uncharacterized conser 98.3 1.5E-06 3.3E-11 81.9 7.5 182 160-358 746-951 (1034)
283 PF10282 Lactonase: Lactonase, 98.3 0.00028 6.1E-09 66.2 22.8 212 95-320 89-330 (345)
284 TIGR03300 assembly_YfgL outer 98.3 0.00035 7.7E-09 66.3 23.4 133 207-352 241-376 (377)
285 COG5170 CDC55 Serine/threonine 98.3 3E-05 6.4E-10 68.5 14.3 159 151-315 175-368 (460)
286 PF08450 SGL: SMP-30/Gluconola 98.2 0.0017 3.7E-08 57.8 25.5 192 153-358 4-215 (246)
287 KOG0882 Cyclophilin-related pe 98.2 1.1E-05 2.4E-10 74.4 10.8 211 90-322 7-239 (558)
288 KOG4532 WD40-like repeat conta 98.2 0.00019 4.1E-09 62.4 17.5 197 153-359 72-286 (344)
289 KOG2041 WD40 repeat protein [G 98.2 0.00059 1.3E-08 66.8 22.4 102 205-315 227-338 (1189)
290 KOG1832 HIV-1 Vpr-binding prot 98.2 1.3E-06 2.9E-11 86.4 4.6 191 90-317 1099-1294(1516)
291 COG2706 3-carboxymuconate cycl 98.1 0.002 4.4E-08 58.4 22.9 222 117-356 15-275 (346)
292 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0022 4.8E-08 59.7 24.0 113 207-322 205-338 (352)
293 KOG1832 HIV-1 Vpr-binding prot 98.1 3.2E-06 7E-11 83.8 4.9 186 149-358 1102-1294(1516)
294 PF04762 IKI3: IKI3 family; I 98.1 0.0022 4.7E-08 67.5 25.7 234 92-357 75-335 (928)
295 KOG1275 PAB-dependent poly(A) 98.1 0.00014 2.9E-09 72.9 15.4 179 160-353 146-340 (1118)
296 PRK04043 tolB translocation pr 98.1 0.0013 2.9E-08 63.2 22.1 188 153-357 192-402 (419)
297 PF07433 DUF1513: Protein of u 98.0 0.0015 3.2E-08 59.0 20.3 201 153-359 9-251 (305)
298 PRK04043 tolB translocation pr 98.0 0.0006 1.3E-08 65.6 19.2 145 204-359 196-361 (419)
299 KOG2314 Translation initiation 98.0 0.0013 2.9E-08 62.6 20.3 130 219-356 427-574 (698)
300 COG4946 Uncharacterized protei 98.0 0.0015 3.2E-08 61.2 20.1 150 156-320 327-483 (668)
301 KOG4714 Nucleoporin [Nuclear s 98.0 2.7E-05 5.9E-10 67.2 7.5 146 207-356 101-255 (319)
302 PF13360 PQQ_2: PQQ-like domai 98.0 0.002 4.3E-08 56.7 19.7 146 207-358 36-194 (238)
303 PF15492 Nbas_N: Neuroblastoma 97.9 0.002 4.3E-08 56.8 17.9 172 96-281 47-270 (282)
304 KOG2066 Vacuolar assembly/sort 97.9 0.0011 2.3E-08 65.8 17.6 143 153-322 44-195 (846)
305 KOG1912 WD40 repeat protein [G 97.8 0.0045 9.8E-08 61.4 20.7 248 86-356 9-305 (1062)
306 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0012 2.7E-08 50.1 13.1 95 156-265 10-109 (111)
307 PF08450 SGL: SMP-30/Gluconola 97.8 0.023 5E-07 50.5 27.2 201 97-325 4-223 (246)
308 COG5354 Uncharacterized protei 97.7 0.0069 1.5E-07 57.3 19.7 247 93-365 72-358 (561)
309 KOG2114 Vacuolar assembly/sort 97.7 0.0039 8.4E-08 62.5 18.9 192 155-358 30-246 (933)
310 KOG1920 IkappaB kinase complex 97.7 0.019 4.1E-07 59.8 23.9 191 93-315 69-323 (1265)
311 KOG1645 RING-finger-containing 97.7 0.00014 3.1E-09 66.4 8.0 102 264-366 175-277 (463)
312 COG5354 Uncharacterized protei 97.7 0.03 6.6E-07 53.1 22.8 129 217-357 255-397 (561)
313 PRK11138 outer membrane biogen 97.7 0.016 3.5E-07 55.4 22.2 141 208-359 206-357 (394)
314 KOG1008 Uncharacterized conser 97.7 2.2E-05 4.7E-10 75.6 2.3 199 93-315 57-276 (783)
315 smart00320 WD40 WD40 repeats. 97.6 0.00017 3.8E-09 42.5 5.2 39 272-312 2-40 (40)
316 PRK11138 outer membrane biogen 97.6 0.03 6.5E-07 53.6 23.1 136 207-354 256-393 (394)
317 PF08553 VID27: VID27 cytoplas 97.6 0.003 6.5E-08 64.4 16.3 100 209-313 544-646 (794)
318 COG4946 Uncharacterized protei 97.6 0.025 5.5E-07 53.3 20.7 142 207-358 332-480 (668)
319 KOG1008 Uncharacterized conser 97.5 4.1E-05 8.8E-10 73.8 1.4 197 153-356 61-276 (783)
320 KOG1920 IkappaB kinase complex 97.4 0.054 1.2E-06 56.6 23.0 150 153-313 200-364 (1265)
321 KOG2066 Vacuolar assembly/sort 97.4 0.0083 1.8E-07 59.8 15.7 188 91-315 38-234 (846)
322 PRK02888 nitrous-oxide reducta 97.4 0.0084 1.8E-07 59.3 15.7 92 261-356 295-405 (635)
323 KOG1645 RING-finger-containing 97.4 0.00067 1.5E-08 62.2 7.6 92 219-316 175-268 (463)
324 KOG1275 PAB-dependent poly(A) 97.4 0.0017 3.6E-08 65.4 10.9 137 162-312 188-340 (1118)
325 PRK02888 nitrous-oxide reducta 97.3 0.02 4.4E-07 56.7 18.1 95 216-315 295-405 (635)
326 PF11768 DUF3312: Protein of u 97.3 0.012 2.7E-07 56.8 15.9 74 283-358 259-332 (545)
327 PF06977 SdiA-regulated: SdiA- 97.3 0.11 2.4E-06 46.1 22.6 162 151-322 24-208 (248)
328 KOG2041 WD40 repeat protein [G 97.3 0.002 4.3E-08 63.3 10.1 112 242-355 15-145 (1189)
329 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.027 5.8E-07 42.9 14.1 90 208-308 16-108 (111)
330 KOG2114 Vacuolar assembly/sort 97.3 0.049 1.1E-06 54.9 19.8 114 209-326 139-256 (933)
331 smart00320 WD40 WD40 repeats. 97.2 0.0011 2.4E-08 38.8 5.3 37 231-268 3-40 (40)
332 KOG3617 WD40 and TPR repeat-co 97.2 0.0012 2.6E-08 65.9 7.5 92 215-314 39-131 (1416)
333 KOG0882 Cyclophilin-related pe 97.1 0.0044 9.5E-08 57.8 9.9 190 160-359 19-235 (558)
334 KOG2314 Translation initiation 97.0 0.0067 1.5E-07 58.0 10.7 107 244-356 213-335 (698)
335 PF07433 DUF1513: Protein of u 97.0 0.26 5.7E-06 44.7 25.5 179 154-347 56-278 (305)
336 PF04053 Coatomer_WDAD: Coatom 96.9 0.22 4.8E-06 48.2 20.3 212 94-355 34-262 (443)
337 KOG3617 WD40 and TPR repeat-co 96.9 0.0066 1.4E-07 60.9 9.6 181 154-355 21-220 (1416)
338 PF04053 Coatomer_WDAD: Coatom 96.8 0.1 2.2E-06 50.5 17.3 135 153-314 37-173 (443)
339 COG3391 Uncharacterized conser 96.8 0.52 1.1E-05 44.9 22.5 191 152-358 34-242 (381)
340 KOG4640 Anaphase-promoting com 96.7 0.0078 1.7E-07 58.5 8.9 77 242-321 21-99 (665)
341 COG3204 Uncharacterized protei 96.6 0.47 1E-05 42.5 19.3 157 151-316 88-265 (316)
342 COG0823 TolB Periplasmic compo 96.6 0.082 1.8E-06 50.9 14.7 138 154-304 243-389 (425)
343 KOG4640 Anaphase-promoting com 96.6 0.012 2.7E-07 57.2 8.8 92 194-293 22-115 (665)
344 KOG2444 WD40 repeat protein [G 96.5 0.0049 1.1E-07 52.7 5.3 142 209-358 32-180 (238)
345 PF06977 SdiA-regulated: SdiA- 96.5 0.56 1.2E-05 41.7 18.9 202 89-311 18-247 (248)
346 PF04841 Vps16_N: Vps16, N-ter 96.4 0.95 2.1E-05 43.6 21.3 70 242-314 217-287 (410)
347 COG3391 Uncharacterized conser 96.4 0.92 2E-05 43.2 24.4 192 153-358 78-286 (381)
348 COG3490 Uncharacterized protei 96.4 0.66 1.4E-05 41.4 20.3 200 153-359 72-314 (366)
349 COG0823 TolB Periplasmic compo 96.4 0.11 2.3E-06 50.1 14.2 146 204-358 201-361 (425)
350 KOG2395 Protein involved in va 96.4 0.08 1.7E-06 50.8 12.7 98 211-313 398-499 (644)
351 KOG2079 Vacuolar assembly/sort 96.2 0.0083 1.8E-07 61.7 5.9 98 208-312 100-201 (1206)
352 PF03178 CPSF_A: CPSF A subuni 96.1 0.48 1E-05 43.9 16.9 133 172-315 62-203 (321)
353 KOG2444 WD40 repeat protein [G 96.1 0.013 2.9E-07 50.1 5.7 137 169-315 37-178 (238)
354 KOG3621 WD40 repeat-containing 96.1 0.028 6.1E-07 55.4 8.7 104 207-315 45-155 (726)
355 PF03178 CPSF_A: CPSF A subuni 96.1 0.71 1.5E-05 42.7 17.9 132 217-355 62-202 (321)
356 PF04841 Vps16_N: Vps16, N-ter 96.1 1.2 2.7E-05 42.8 19.8 170 173-355 62-246 (410)
357 PF12894 Apc4_WD40: Anaphase-p 96.0 0.023 5.1E-07 36.2 5.3 32 242-274 12-44 (47)
358 COG3386 Gluconolactonase [Carb 95.9 1.3 2.9E-05 40.6 20.1 192 154-358 30-245 (307)
359 KOG4649 PQQ (pyrrolo-quinoline 95.7 0.58 1.3E-05 41.2 14.0 107 209-323 25-132 (354)
360 KOG3621 WD40 repeat-containing 95.7 0.082 1.8E-06 52.3 9.7 134 160-302 44-187 (726)
361 PF00780 CNH: CNH domain; Int 95.6 1.6 3.5E-05 39.2 22.8 226 109-365 8-264 (275)
362 PHA02713 hypothetical protein; 95.6 0.3 6.4E-06 49.0 14.0 90 263-358 433-536 (557)
363 PF06433 Me-amine-dh_H: Methyl 95.5 1.6 3.4E-05 40.4 17.0 114 207-324 195-330 (342)
364 KOG2079 Vacuolar assembly/sort 95.5 0.051 1.1E-06 56.2 8.0 97 254-354 101-202 (1206)
365 PF08553 VID27: VID27 cytoplas 95.4 0.41 9E-06 49.3 14.2 132 215-354 502-646 (794)
366 PRK13616 lipoprotein LpqB; Pro 95.2 2.1 4.6E-05 43.1 18.4 70 242-314 448-525 (591)
367 KOG2395 Protein involved in va 95.1 0.88 1.9E-05 44.0 14.3 139 207-354 345-499 (644)
368 KOG4441 Proteins containing BT 94.6 0.99 2.1E-05 45.4 14.3 181 161-358 285-502 (571)
369 cd00216 PQQ_DH Dehydrogenases 94.5 1.8 3.8E-05 42.8 15.6 113 207-323 61-192 (488)
370 cd00216 PQQ_DH Dehydrogenases 94.4 4.2 9E-05 40.1 18.1 145 208-359 111-323 (488)
371 KOG4649 PQQ (pyrrolo-quinoline 94.2 3.7 7.9E-05 36.4 18.1 102 207-314 63-165 (354)
372 KOG4460 Nuclear pore complex, 94.2 1.3 2.8E-05 42.8 13.1 78 242-319 104-203 (741)
373 PF08596 Lgl_C: Lethal giant l 94.2 0.85 1.8E-05 43.5 12.1 74 241-314 86-173 (395)
374 PF00780 CNH: CNH domain; Int 94.1 4.2 9E-05 36.5 17.8 141 207-358 7-168 (275)
375 PF12894 Apc4_WD40: Anaphase-p 94.0 0.22 4.8E-06 31.7 5.4 30 283-313 11-40 (47)
376 PF14727 PHTB1_N: PTHB1 N-term 93.9 6.3 0.00014 37.9 17.8 152 158-313 34-203 (418)
377 PF15390 DUF4613: Domain of un 93.8 4 8.7E-05 40.3 15.7 107 206-315 71-187 (671)
378 PF02897 Peptidase_S9_N: Proly 93.7 6.9 0.00015 37.5 23.6 248 93-360 124-409 (414)
379 KOG4441 Proteins containing BT 93.2 2.7 5.9E-05 42.3 14.4 187 153-358 327-549 (571)
380 PF08728 CRT10: CRT10; InterP 93.1 1.5 3.2E-05 44.7 12.0 117 193-313 101-245 (717)
381 PF02897 Peptidase_S9_N: Proly 93.1 1.9 4.2E-05 41.3 12.9 110 244-357 126-262 (414)
382 KOG1897 Damage-specific DNA bi 93.0 9.6 0.00021 39.9 17.6 133 216-355 806-942 (1096)
383 PF06433 Me-amine-dh_H: Methyl 93.0 0.27 6E-06 45.2 6.3 58 218-280 270-330 (342)
384 PF10313 DUF2415: Uncharacteri 92.4 0.41 8.9E-06 29.7 4.6 30 242-271 1-34 (43)
385 PHA02713 hypothetical protein; 92.4 1.1 2.5E-05 44.9 10.5 101 218-326 433-545 (557)
386 PF12234 Rav1p_C: RAVE protein 92.3 4.1 8.8E-05 41.1 13.9 98 208-313 41-155 (631)
387 PRK13616 lipoprotein LpqB; Pro 92.3 1.4 3E-05 44.4 10.9 96 202-310 356-472 (591)
388 KOG4499 Ca2+-binding protein R 92.1 3.4 7.3E-05 36.0 11.3 97 153-260 162-275 (310)
389 PF14761 HPS3_N: Hermansky-Pud 92.1 3.2 6.9E-05 35.7 11.2 102 209-315 30-164 (215)
390 PF07569 Hira: TUP1-like enhan 91.9 1.1 2.5E-05 39.0 8.7 61 206-270 21-95 (219)
391 PF08596 Lgl_C: Lethal giant l 91.5 6.1 0.00013 37.8 13.8 110 243-355 3-173 (395)
392 PF00930 DPPIV_N: Dipeptidyl p 91.2 0.84 1.8E-05 42.9 7.7 91 216-313 22-130 (353)
393 PF10313 DUF2415: Uncharacteri 91.0 0.94 2E-05 28.1 5.0 32 284-315 1-34 (43)
394 COG3386 Gluconolactonase [Carb 90.9 13 0.00028 34.2 21.2 81 242-325 163-253 (307)
395 PHA03098 kelch-like protein; P 90.4 9.1 0.0002 38.2 14.6 103 252-358 389-514 (534)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 89.8 5.8 0.00013 38.0 11.9 82 242-324 308-408 (415)
397 PF05096 Glu_cyclase_2: Glutam 89.5 15 0.00032 32.9 13.4 123 231-358 34-160 (264)
398 PF10168 Nup88: Nuclear pore c 89.2 9.5 0.00021 39.5 13.7 73 242-315 85-180 (717)
399 PF05096 Glu_cyclase_2: Glutam 88.9 17 0.00036 32.5 16.2 144 207-358 56-206 (264)
400 TIGR03118 PEPCTERM_chp_1 conse 88.8 18 0.0004 32.9 21.1 202 150-358 25-282 (336)
401 PF07569 Hira: TUP1-like enhan 88.7 3.2 6.9E-05 36.2 8.7 71 242-317 13-98 (219)
402 TIGR02604 Piru_Ver_Nterm putat 88.5 22 0.00049 33.5 15.1 125 218-346 48-204 (367)
403 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.3 24 0.00052 35.2 15.7 54 306-359 441-494 (527)
404 PF10647 Gmad1: Lipoprotein Lp 88.2 18 0.0004 32.2 15.5 144 151-306 26-187 (253)
405 PF12234 Rav1p_C: RAVE protein 87.9 9.6 0.00021 38.5 12.4 104 164-269 43-155 (631)
406 PF15390 DUF4613: Domain of un 87.6 19 0.00041 35.8 13.6 108 151-270 59-186 (671)
407 PF14781 BBS2_N: Ciliary BBSom 87.6 13 0.00027 29.6 12.9 107 207-318 10-129 (136)
408 COG3490 Uncharacterized protei 87.5 22 0.00047 32.2 13.7 81 218-303 92-180 (366)
409 PRK10115 protease 2; Provision 87.5 21 0.00045 37.0 15.0 109 242-354 127-254 (686)
410 TIGR03074 PQQ_membr_DH membran 87.4 12 0.00026 39.0 13.2 107 253-359 195-348 (764)
411 KOG1897 Damage-specific DNA bi 87.4 43 0.00092 35.5 23.5 132 217-355 470-613 (1096)
412 PF10647 Gmad1: Lipoprotein Lp 87.4 12 0.00026 33.3 11.8 101 205-314 33-144 (253)
413 PF08728 CRT10: CRT10; InterP 87.3 14 0.0003 37.9 13.1 175 42-224 49-245 (717)
414 PHA02790 Kelch-like protein; P 87.2 27 0.00059 34.4 15.2 138 209-358 321-473 (480)
415 PF12657 TFIIIC_delta: Transcr 86.7 4.2 9.1E-05 33.9 8.0 31 285-315 87-122 (173)
416 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.6 11 0.00024 37.6 12.1 105 252-359 69-193 (527)
417 COG5167 VID27 Protein involved 85.4 18 0.00039 35.3 12.0 101 207-314 528-632 (776)
418 TIGR03074 PQQ_membr_DH membran 85.1 53 0.0011 34.4 16.6 147 207-359 260-481 (764)
419 PF10168 Nup88: Nuclear pore c 84.7 33 0.00071 35.6 14.7 36 193-228 147-182 (717)
420 KOG2377 Uncharacterized conser 84.1 22 0.00048 34.2 11.8 143 208-357 34-187 (657)
421 PF00930 DPPIV_N: Dipeptidyl p 84.0 37 0.00081 31.8 14.1 91 205-302 245-345 (353)
422 PF14583 Pectate_lyase22: Olig 83.8 18 0.00038 34.3 11.2 93 248-342 42-141 (386)
423 PF14870 PSII_BNR: Photosynthe 83.5 31 0.00067 31.7 12.6 137 207-352 155-301 (302)
424 KOG1916 Nuclear protein, conta 82.4 2.4 5.3E-05 43.7 5.3 140 217-360 153-328 (1283)
425 PF14727 PHTB1_N: PTHB1 N-term 81.1 55 0.0012 31.6 16.5 145 207-354 37-203 (418)
426 PHA03098 kelch-like protein; P 80.7 24 0.00053 35.1 12.0 130 218-358 312-467 (534)
427 PF02333 Phytase: Phytase; In 80.1 55 0.0012 31.0 19.2 195 154-357 59-292 (381)
428 KOG3630 Nuclear pore complex, 79.4 10 0.00023 40.4 8.7 88 209-301 170-260 (1405)
429 PF05694 SBP56: 56kDa selenium 78.5 23 0.00049 34.1 10.0 96 216-315 221-343 (461)
430 PF11715 Nup160: Nucleoporin N 78.5 13 0.00027 37.3 9.2 37 286-322 217-256 (547)
431 PF14655 RAB3GAP2_N: Rab3 GTPa 77.8 18 0.00039 34.7 9.4 76 283-359 307-402 (415)
432 TIGR02276 beta_rpt_yvtn 40-res 77.6 12 0.00026 22.3 5.7 39 206-249 2-41 (42)
433 PHA02790 Kelch-like protein; P 76.5 42 0.00091 33.0 12.0 95 208-315 364-471 (480)
434 COG1520 FOG: WD40-like repeat 74.3 78 0.0017 29.8 15.1 145 208-358 69-220 (370)
435 PF11635 Med16: Mediator compl 74.1 1.2E+02 0.0026 31.8 19.8 66 242-309 260-345 (753)
436 KOG1916 Nuclear protein, conta 74.1 4.3 9.3E-05 42.0 4.2 104 248-354 242-373 (1283)
437 PF12768 Rax2: Cortical protei 73.9 49 0.0011 30.0 10.7 93 217-313 16-122 (281)
438 PF11715 Nup160: Nucleoporin N 73.7 18 0.00038 36.3 8.7 35 243-277 216-255 (547)
439 TIGR02276 beta_rpt_yvtn 40-res 72.0 15 0.00033 21.9 5.1 29 251-279 1-31 (42)
440 PF14781 BBS2_N: Ciliary BBSom 71.5 50 0.0011 26.3 12.7 64 207-275 63-130 (136)
441 PF07250 Glyoxal_oxid_N: Glyox 70.7 58 0.0012 28.9 10.1 129 219-358 48-200 (243)
442 PF14779 BBS1: Ciliary BBSome 70.0 81 0.0018 28.1 17.0 153 156-310 25-254 (257)
443 TIGR02604 Piru_Ver_Nterm putat 68.2 1.1E+02 0.0024 28.9 15.0 18 242-259 184-202 (367)
444 KOG1983 Tomosyn and related SN 67.7 98 0.0021 33.6 12.9 25 335-359 244-268 (993)
445 PRK13684 Ycf48-like protein; P 67.7 1.1E+02 0.0023 28.6 17.9 101 208-312 226-329 (334)
446 COG5167 VID27 Protein involved 66.8 1.1E+02 0.0023 30.3 11.4 131 214-355 487-632 (776)
447 COG1520 FOG: WD40-like repeat 66.7 81 0.0018 29.7 11.2 106 251-359 67-175 (370)
448 PF10214 Rrn6: RNA polymerase 66.1 1.1E+02 0.0024 32.2 12.8 114 241-357 145-278 (765)
449 PF07676 PD40: WD40-like Beta 65.6 25 0.00055 20.7 5.2 26 242-267 9-38 (39)
450 COG3204 Uncharacterized protei 65.5 57 0.0012 29.6 9.0 78 278-357 81-160 (316)
451 PF12265 CAF1C_H4-bd: Histone- 64.9 8.6 0.00019 27.0 3.1 24 25-48 43-67 (74)
452 PF07995 GSDH: Glucose / Sorbo 64.9 1.2E+02 0.0026 28.2 12.2 49 243-293 3-58 (331)
453 PF14870 PSII_BNR: Photosynthe 64.8 1.2E+02 0.0025 28.0 15.4 150 150-311 146-301 (302)
454 KOG4499 Ca2+-binding protein R 64.7 1E+02 0.0022 27.2 16.6 91 242-335 158-260 (310)
455 KOG3630 Nuclear pore complex, 64.5 37 0.00081 36.5 8.6 97 214-313 121-227 (1405)
456 smart00564 PQQ beta-propeller 62.9 18 0.00038 20.3 3.8 26 252-277 6-31 (33)
457 KOG1900 Nuclear pore complex, 62.1 91 0.002 34.2 11.0 71 241-315 178-273 (1311)
458 KOG2247 WD40 repeat-containing 61.8 1.5 3.2E-05 42.1 -1.6 142 154-309 40-183 (615)
459 PF05694 SBP56: 56kDa selenium 59.1 1.7E+02 0.0037 28.4 11.3 98 170-271 220-343 (461)
460 PF02333 Phytase: Phytase; In 57.6 1.8E+02 0.0038 27.7 20.3 110 211-322 175-299 (381)
461 PF12657 TFIIIC_delta: Transcr 56.3 1E+02 0.0022 25.5 8.7 34 93-126 86-121 (173)
462 KOG2247 WD40 repeat-containing 54.8 1 2.2E-05 43.2 -3.9 111 207-326 46-159 (615)
463 PF13570 PQQ_3: PQQ-like domai 53.1 24 0.00052 21.0 3.3 21 336-356 20-40 (40)
464 PF07995 GSDH: Glucose / Sorbo 52.3 2E+02 0.0043 26.7 11.5 108 191-307 3-136 (331)
465 PF03088 Str_synth: Strictosid 52.2 91 0.002 22.8 7.1 43 257-302 32-74 (89)
466 PLN00033 photosystem II stabil 50.5 2.4E+02 0.0052 27.1 18.7 67 242-311 328-396 (398)
467 TIGR03548 mutarot_permut cycli 47.0 2.3E+02 0.005 25.9 12.5 63 252-317 123-197 (323)
468 PF10214 Rrn6: RNA polymerase 44.6 4E+02 0.0087 28.1 15.7 81 94-181 147-233 (765)
469 PF01731 Arylesterase: Arylest 44.5 1.2E+02 0.0026 22.0 6.3 31 284-315 54-85 (86)
470 TIGR03606 non_repeat_PQQ dehyd 43.5 3.3E+02 0.0071 26.7 11.6 114 96-217 33-167 (454)
471 PF01731 Arylesterase: Arylest 42.7 1.1E+02 0.0024 22.2 5.9 47 217-270 36-84 (86)
472 COG5276 Uncharacterized conser 42.3 2.8E+02 0.006 25.5 16.6 99 209-315 98-200 (370)
473 PF07250 Glyoxal_oxid_N: Glyox 42.3 80 0.0017 28.0 6.1 88 265-354 49-147 (243)
474 PF01011 PQQ: PQQ enzyme repea 42.2 45 0.00098 19.6 3.3 26 254-279 2-27 (38)
475 PF03088 Str_synth: Strictosid 41.8 65 0.0014 23.6 4.6 38 215-257 35-73 (89)
476 KOG2280 Vacuolar assembly/sort 41.2 4.4E+02 0.0095 27.5 15.1 35 324-358 215-249 (829)
477 PF14269 Arylsulfotran_2: Aryl 40.5 1.2E+02 0.0026 27.8 7.2 111 242-354 144-288 (299)
478 PF14761 HPS3_N: Hermansky-Pud 40.4 1.8E+02 0.0039 25.2 7.7 54 246-303 22-78 (215)
479 TIGR03118 PEPCTERM_chp_1 conse 40.2 3E+02 0.0066 25.4 20.5 67 256-324 216-289 (336)
480 PF14583 Pectate_lyase22: Olig 39.5 3.5E+02 0.0075 25.8 25.6 134 218-358 169-331 (386)
481 COG3823 Glutamine cyclotransfe 38.3 2.7E+02 0.0058 24.2 10.3 137 209-358 58-207 (262)
482 PRK10115 protease 2; Provision 37.6 4.9E+02 0.011 27.0 27.2 240 93-358 127-397 (686)
483 PF05935 Arylsulfotrans: Aryls 36.6 4.2E+02 0.0092 26.0 17.7 72 286-357 273-369 (477)
484 PF12768 Rax2: Cortical protei 35.9 1.2E+02 0.0026 27.6 6.3 55 261-317 15-75 (281)
485 PLN02193 nitrile-specifier pro 35.8 4.3E+02 0.0094 25.9 13.8 103 252-358 278-413 (470)
486 KOG3616 Selective LIM binding 35.1 99 0.0021 32.0 6.0 66 242-312 15-81 (1636)
487 KOG3616 Selective LIM binding 34.8 1.2E+02 0.0027 31.4 6.6 33 283-316 14-46 (1636)
488 TIGR03548 mutarot_permut cycli 34.7 3.1E+02 0.0067 25.1 9.2 84 217-305 139-233 (323)
489 PF12341 DUF3639: Protein of u 34.0 87 0.0019 17.3 3.9 25 284-311 2-26 (27)
490 PF13449 Phytase-like: Esteras 32.2 4.1E+02 0.0089 24.5 16.5 59 241-301 146-231 (326)
491 PF14339 DUF4394: Domain of un 30.3 3.8E+02 0.0083 23.6 12.3 76 241-317 26-106 (236)
492 PF01436 NHL: NHL repeat; Int 30.0 1E+02 0.0022 16.8 4.1 22 245-266 5-27 (28)
493 COG3211 PhoX Predicted phospha 28.4 1.2E+02 0.0026 30.3 5.3 56 246-302 504-571 (616)
494 COG3823 Glutamine cyclotransfe 28.2 3E+02 0.0065 24.0 7.0 97 254-356 58-159 (262)
495 COG5290 IkappaB kinase complex 28.1 2.7E+02 0.0059 29.2 7.7 160 148-315 112-325 (1243)
496 PF14269 Arylsulfotran_2: Aryl 27.4 2.9E+02 0.0063 25.3 7.5 67 286-354 146-219 (299)
497 KOG1900 Nuclear pore complex, 27.3 5.4E+02 0.012 28.7 10.1 133 213-356 95-273 (1311)
498 PF05935 Arylsulfotrans: Aryls 27.0 6.2E+02 0.013 24.9 10.7 49 289-344 153-208 (477)
499 PLN00033 photosystem II stabil 26.3 5.9E+02 0.013 24.4 15.8 107 241-352 280-396 (398)
500 PLN02153 epithiospecifier prot 25.4 5.4E+02 0.012 23.7 14.6 12 306-317 217-228 (341)
No 1
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=8.5e-39 Score=287.53 Aligned_cols=325 Identities=15% Similarity=0.137 Sum_probs=241.4
Q ss_pred ceeeeecCCccccCCCCCccccceeEEEecCCC-ceEEEEEEeCCeEEEEEEeCCchhh---hcCCCcccccc---Cccc
Q 017601 8 SLRKAEVPLSLIENPSPGNIQCTRLALHVNEDG-CSCFVYIASGCHLYKLQVMMDDWFV---SEGKDSLLIPE---QTPV 80 (369)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~as~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~ 80 (369)
||--+=+|-.. .+..+++..|||+++++++| ++|+++|| .|.+|.... ..+.+.-.-.. ....
T Consensus 43 SLt~qWlPd~~--~~~~~~~~~~rliLGthTs~~~~n~L~iA--------~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~ 112 (422)
T KOG0264|consen 43 SLTVQWLPDVT--KPEEKDFSKQRLILGTHTSGSEQNYLVIA--------SVQLPTDDAQFEDKHYDEERGEFGGFGAVS 112 (422)
T ss_pred ceEEEEcCCcc--cccCCCceeEEEEEEeecCCCCccEEEEE--------eecCCCcccccccccccccccccCCccccc
Confidence 44444445433 23567788899999999955 99999999 656652221 11111000000 0112
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCC--CCCCCCCeeEEEECC
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQD--CGVGEGSWSGLCFSP 158 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p 158 (369)
....+..++.|.++|++++++|+. ..++|+....+.++|||+.+......... ...|.. .++..+|+ +|+|++
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQn---p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~-glsWn~ 187 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQN---PNIVATKTSSGDVYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGY-GLSWNR 187 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCC---CcEEEecCCCCCEEEEEeccCCCcccccc-cCCCceEEEeeccccc-cccccc
Confidence 334555578999999999999985 78999999999999999998743222110 111111 12223355 699999
Q ss_pred CCceeEEEEecccceEEEEeCCcc------eEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDIH------LRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~~------~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
.....++++ +.|++|++||+... +.... ...|...++.+.+++.. ...|.++++|+.+.|||+|++ ..+
T Consensus 188 ~~~g~Lls~-~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h--~~lF~sv~dd~~L~iwD~R~~-~~~ 263 (422)
T KOG0264|consen 188 QQEGTLLSG-SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH--EDLFGSVGDDGKLMIWDTRSN-TSK 263 (422)
T ss_pred ccceeEeec-cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc--hhhheeecCCCeEEEEEcCCC-CCC
Confidence 999999998 99999999998521 22222 22366677777777754 468899999999999999964 235
Q ss_pred eeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 232 CLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
+.+....| ...|+|++|+|-+ .||+||.|++|+|||+|+ .++++++.+| ++.|..|.|||.....|||++.|+++
T Consensus 264 ~~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 264 PSHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred Cccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcE
Confidence 55555555 6999999999998 999999999999999999 6789999999 99999999999889999999999999
Q ss_pred EEEECcC--------------CceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECC
Q 017601 309 FCGQWRE--------------SSKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 309 ~vwd~~~--------------~~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+||+.. .+++|.+.||. ..+.. +| +...|+|.++|+.++||++.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999965 36789999998 44433 44 77889999999999999987
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-38 Score=279.34 Aligned_cols=261 Identities=16% Similarity=0.175 Sum_probs=210.2
Q ss_pred CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCC
Q 017601 70 DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEG 149 (369)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (369)
.|....+..+.. .....+.+|.+.|-++.|+|.. +..-+|+++.||.+.+|++++.. .+ ..+.+|...
T Consensus 196 sG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~-~l----~~l~gH~~R---- 263 (459)
T KOG0272|consen 196 SGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQET-PL----QDLEGHLAR---- 263 (459)
T ss_pred CCceeEeecCCc-ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCc-ch----hhhhcchhh----
Confidence 444433343344 2445578999999999999972 24789999999999999998641 11 122223222
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+..++|+| ++.+++++ |+|.+.+|||+......+....|...+..+.+ .+||..+++++-|..-+|||+|++
T Consensus 264 -Vs~VafHP-sG~~L~Ta-sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf---~~DGSL~~tGGlD~~~RvWDlRtg-- 335 (459)
T KOG0272|consen 264 -VSRVAFHP-SGKFLGTA-SFDSTWRLWDLETKSELLLQEGHSKGVFSIAF---QPDGSLAATGGLDSLGRVWDLRTG-- 335 (459)
T ss_pred -heeeeecC-CCceeeec-ccccchhhcccccchhhHhhcccccccceeEe---cCCCceeeccCccchhheeecccC--
Confidence 44799999 45688888 99999999999765544444445544444443 346777777889999999999999
Q ss_pred CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
.++..+.+| ..+|++|+|+|+| .|||||.|++++|||+|..+++.++.+| .+.|+.|.|+|..|.+|+|+|.|+++
T Consensus 336 -r~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 336 -RCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred -cEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccCCeEEEEcccCcce
Confidence 899999987 8999999999999 9999999999999999999999999999 99999999999789999999999999
Q ss_pred EEEECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 309 FCGQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
++|..++..+++.+.||.. ..++..++|+..|+|++.|++|++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999982 23334466999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=272.60 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=202.4
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.|-|++|+|++ ..|++++.+-++++||+.+. ...+.+..|.. -+.+++|+| +...||++
T Consensus 112 ~GH~e~Vl~~~fsp~g----~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~-----WVlcvawsP-Dgk~iASG- 175 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTG----SRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKN-----WVLCVAWSP-DGKKIASG- 175 (480)
T ss_pred CCCCCcEEEEEecCCC----ceEEecCCCceEEeeccCCC-----CcceeecCCcc-----EEEEEEECC-Ccchhhcc-
Confidence 4899999999999984 79999999999999999876 22344444433 245899999 56688998
Q ss_pred cccceEEEEeCCcceEEEEee-eCCcceeeeccCCC--CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSP--VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|++|++||...-....+.+ .|..-+..+.+.|. .|...+|++++.||.|+|||+..+ .++..+.+| +.+|+
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~---~~~~~lsgH-T~~VT 251 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG---TCVRTLSGH-TASVT 251 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---eEEEEeccC-ccceE
Confidence 999999999964322222222 23334444444332 345668888999999999999988 899999988 89999
Q ss_pred EEEECCCCcEEEEeCCCcEEEEeCCCc-----------------------------------------------------
Q 017601 246 AVCSSSTGNIAVAGADRTVTIYDPRRW----------------------------------------------------- 272 (369)
Q Consensus 246 ~v~~sp~g~lasgs~D~~v~vwD~~~~----------------------------------------------------- 272 (369)
|++|--+|+|++||.|++|++|+...|
T Consensus 252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 999998889999999999999986522
Q ss_pred --------------------------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 273 --------------------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 273 --------------------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+++..+.+| +..|+.+.||| |++++||+|.|+.|++||-++++.+.+|+||.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 223344567 77899999999 99999999999999999999999999999998
Q ss_pred CeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 327 NWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 327 ~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
..+-. ++|.++|+|||.|.++++|++++++. ..-|.||.
T Consensus 410 --~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-~~DLpGh~ 451 (480)
T KOG0271|consen 410 --AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-KQDLPGHA 451 (480)
T ss_pred --ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-cccCCCCC
Confidence 44433 55999999999999999999999875 45577764
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=268.65 Aligned_cols=255 Identities=14% Similarity=0.096 Sum_probs=208.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~ 167 (369)
.+-...|....|+.|+ ..+++++-.|.+.+|+...... ...+.+|... +.++.|+|. ++..+|+|
T Consensus 172 ~gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~~~-----~~~l~gH~~~-----v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQCNL-----LQTLRGHTSR-----VGAAVFHPVDSDLNLATA 237 (459)
T ss_pred ccCCCcceeeEeecCC----CeEEEeecCCceeEeecCCcce-----eEEEeccccc-----eeeEEEccCCCccceeee
Confidence 3567889999999984 7999999999999999986521 2233444433 338999997 36678998
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|+++++|+.....-......|...+.-+.+ .|+|..|++++.|.+-+|||++++ ..+....+| ...|+++
T Consensus 238 -s~Dgtvklw~~~~e~~l~~l~gH~~RVs~Vaf---HPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGH-s~~v~~i 309 (459)
T KOG0272|consen 238 -SADGTVKLWKLSQETPLQDLEGHLARVSRVAF---HPSGKFLGTASFDSTWRLWDLETK---SELLLQEGH-SKGVFSI 309 (459)
T ss_pred -ccCCceeeeccCCCcchhhhhcchhhheeeee---cCCCceeeecccccchhhcccccc---hhhHhhccc-cccccee
Confidence 99999999988643211122234444555543 356889999999999999999998 666666666 6899999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+|.||| ++++|+.|..-+|||+|++.++..|.+| ..+|.+|+|+| +|..|||||.|++++|||++..+++.++.+|+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH-~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~ 387 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH-IKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHS 387 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEeccc-ccceeeEeECC-CceEEeecCCCCcEEEeeecccccceeccccc
Confidence 999999 9999999999999999999999999999 99999999999 99999999999999999999999999999999
Q ss_pred Ceee-eeEcC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 327 NWLG-FSKCS-NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 327 ~~~~-~~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+... +...+ .|.+|+|+|.|++++||...+.. .+..|.||-
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-~~ksLaGHe 430 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-PLKSLAGHE 430 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcc-cchhhcCCc
Confidence 6543 23355 78999999999999999988775 467787774
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=248.70 Aligned_cols=259 Identities=18% Similarity=0.182 Sum_probs=209.5
Q ss_pred ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 83 SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 83 ~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
..+..+.+|+++|+.+.|+|++ ..+|++..|-.|.+|++....+. ...+..|..+ +-++.|.+ +..
T Consensus 38 ap~m~l~gh~geI~~~~F~P~g----s~~aSgG~Dr~I~LWnv~gdceN----~~~lkgHsgA-----VM~l~~~~-d~s 103 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDG----SCFASGGSDRAIVLWNVYGDCEN----FWVLKGHSGA-----VMELHGMR-DGS 103 (338)
T ss_pred chhhhcCCCcceEEEEEECCCC----CeEeecCCcceEEEEeccccccc----eeeeccccce-----eEeeeecc-CCC
Confidence 3455688999999999999974 79999999999999998754221 2233445443 44799999 556
Q ss_pred eEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 163 MAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
.++++ +.|++|+.||.....+..+...|...++.+.....++ ..+.++++|++++|||+|+. .+++++... .
T Consensus 104 ~i~S~-gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~--~lv~SgsdD~t~kl~D~R~k---~~~~t~~~k--y 175 (338)
T KOG0265|consen 104 HILSC-GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGP--QLVCSGSDDGTLKLWDIRKK---EAIKTFENK--Y 175 (338)
T ss_pred EEEEe-cCCceEEEEecccceeeehhccccceeeecCccccCC--eEEEecCCCceEEEEeeccc---chhhccccc--e
Confidence 78888 8999999999864444333334556666666444433 34556788999999999998 788888766 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----Cc
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SS 317 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~ 317 (369)
++++++|..++ .+.+|+-|+.|++||+|+...++.+.|| .+.|+.+..+| +|.++++-++|.++++||++. .+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEecc-CCCccccccccceEEEEEecccCCCCc
Confidence 89999999999 9999999999999999999999999999 99999999999 999999999999999999987 57
Q ss_pred eeEEEEcCCCeeeeeE-------cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 318 KVFAFRGDSNWLGFSK-------CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~-------~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
++..|.||. .++++ ++++..+..||.|+.+++||....+ .+-.+.||.
T Consensus 254 ~v~if~g~~--hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~-~lyklpGh~ 308 (338)
T KOG0265|consen 254 CVKIFQGHI--HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR-ILYKLPGHY 308 (338)
T ss_pred eEEEeecch--hhhhhhcceeeccCCCCccccccccceEEEeeccccc-EEEEcCCcc
Confidence 799999987 44444 4599999999999999999997654 355577764
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.4e-34 Score=260.83 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=240.8
Q ss_pred cCCCCCccccceeEEEec-----CCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccce
Q 017601 20 ENPSPGNIQCTRLALHVN-----EDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSE 94 (369)
Q Consensus 20 ~~~~~~~~~~~r~~~~~~-----~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~ 94 (369)
++|...++|++| +..++ |.| .|||||+..++++ +|..++..+..+-+...-.+.
T Consensus 47 ~~~~~~~iYtEH-~~~vtVAkySPsG----~yiASGD~sG~vR----------------IWdtt~~~hiLKnef~v~aG~ 105 (603)
T KOG0318|consen 47 DNPASVDIYTEH-AHQVTVAKYSPSG----FYIASGDVSGKVR----------------IWDTTQKEHILKNEFQVLAGP 105 (603)
T ss_pred CCccceeeeccc-cceeEEEEeCCCc----eEEeecCCcCcEE----------------EEeccCcceeeeeeeeecccc
Confidence 455667777777 43333 677 4889888777777 777777777777777788899
Q ss_pred eeEEEEeecCCCCceEEEE-E---ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 95 VQSIALAETDSSGYMVLGS-V---DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las-~---d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|.+|+|++|+ ++|++ + .+.|++++||..+...++.++...+ .+++|.|..+.+++++ +.
T Consensus 106 I~Di~Wd~ds----~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~i------------ns~~~KpsRPfRi~T~-sd 168 (603)
T KOG0318|consen 106 IKDISWDFDS----KRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRI------------NSVDFKPSRPFRIATG-SD 168 (603)
T ss_pred cccceeCCCC----cEEEEEecCccceeEEEEecCCCccceeeccceeE------------eeeeccCCCceEEEec-cC
Confidence 9999999984 45544 4 4578899999988777777655543 4699999999999999 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee---ccCCCcEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC---GSVGDILYAV 247 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~---~~~~~~v~~v 247 (369)
|++|.+|+.....+......|.. |+++..|+|||..+++++.|+++.|||-+++ ..+..+. .| .+.|+++
T Consensus 169 Dn~v~ffeGPPFKFk~s~r~Hsk---FV~~VRysPDG~~Fat~gsDgki~iyDGktg---e~vg~l~~~~aH-kGsIfal 241 (603)
T KOG0318|consen 169 DNTVAFFEGPPFKFKSSFREHSK---FVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---EKVGELEDSDAH-KGSIFAL 241 (603)
T ss_pred CCeEEEeeCCCeeeeeccccccc---ceeeEEECCCCCeEEEecCCccEEEEcCCCc---cEEEEecCCCCc-cccEEEE
Confidence 99999999886655543333333 6666678889999999999999999999999 5565555 44 6899999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc--ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC--SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h--~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+||+ +++++|.|+++||||+.+.+++.+|.-- ..+....+.|.. ..|++.|.+|+|.+++......++.+.|
T Consensus 242 sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~G~in~ln~~d~~~~~~i~G 318 (603)
T KOG0318|consen 242 SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLSGTINYLNPSDPSVLKVISG 318 (603)
T ss_pred EECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcCcEEEEecccCCChhheecc
Confidence 999999 9999999999999999999999988733 125566777754 7899999999999999999889999999
Q ss_pred CCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 325 DSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 325 ~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
|. .++.. ++|+.+|+|||.||.|.-|+..++.+.....++|.|
T Consensus 319 Hn--K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n 364 (603)
T KOG0318|consen 319 HN--KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN 364 (603)
T ss_pred cc--cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence 99 56655 569999999999999999999999876555566654
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-33 Score=237.43 Aligned_cols=257 Identities=17% Similarity=0.136 Sum_probs=199.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.++|..++..+.. ..++.+++.+..+.+|++...........+.+.+|... +..++.++ +++++.+
T Consensus 10 tl~gh~d~Vt~la~~~~~---~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-----v~dv~~s~-dg~~alS 80 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKN---SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-----VSDVVLSS-DGNFALS 80 (315)
T ss_pred eecCCCceEEEEEeecCC---CceEEEcccceEEEEEEeccCccccCceeeeeeccceE-----ecceEEcc-CCceEEe
Confidence 367999999999998873 67999999999999999986532222222334444332 45789999 4556666
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILY 245 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~ 245 (369)
+ |+|+++++||+.....+.+...|...+-.++ +++|+.++++++-|.+|++|++... +..++.... .+.|+
T Consensus 81 ~-swD~~lrlWDl~~g~~t~~f~GH~~dVlsva---~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 81 A-SWDGTLRLWDLATGESTRRFVGHTKDVLSVA---FSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVS 152 (315)
T ss_pred c-cccceEEEEEecCCcEEEEEEecCCceEEEE---ecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEE
Confidence 6 9999999999875444444444555555554 4567889999999999999998764 666655432 58899
Q ss_pred EEEECCC--C-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 246 AVCSSST--G-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~--g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
|++|+|+ . .|+++|+|++||+||+++.+..+.+.|| ...++.+++|| ||.++++|+.|+.+.+||++.++.++.+
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEec
Confidence 9999999 4 9999999999999999999999999999 99999999999 9999999999999999999999999999
Q ss_pred EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 323 RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 323 ~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
.+......+..+|+.-.|+ ...+..|+|||++++.. ++.|
T Consensus 231 ~a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~-v~~l 270 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAV-VEEL 270 (315)
T ss_pred cCCCeEeeEEecCCceeEe-eccCCceEEEeccchhh-hhhc
Confidence 7766444555566544444 44555699999998763 3433
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-34 Score=250.34 Aligned_cols=282 Identities=13% Similarity=0.097 Sum_probs=214.3
Q ss_pred EEEEEeCCchhhhcC-CCccccccCcccccccccccCCccceeeEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCC
Q 017601 54 YKLQVMMDDWFVSEG-KDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
..++.++++.....| +++..+-++...+....-.+.+|+..|++|+|-|-.- ....++|+.+++|.++|||+..+
T Consensus 161 lcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~--- 237 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG--- 237 (480)
T ss_pred EEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc---
Confidence 344556666666444 4555544455555544455789999999999987431 23468999999999999999854
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCC-cceeee-----ccCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYP-SSLNFV-----QNLSP 203 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~-~~v~~~-----~~~~~ 203 (369)
...+.+.+|... ++++.|-- +++++++ |.|++|++|+.. ...+.++.+.|- ..+... ...+|
T Consensus 238 --~~~~~lsgHT~~-----VTCvrwGG--~gliySg-S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 238 --TCVRTLSGHTAS-----VTCVRWGG--EGLIYSG-SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred --eEEEEeccCccc-----eEEEEEcC--CceEEec-CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 223444555443 56898864 5688888 999999999864 344444432211 111110 01111
Q ss_pred CC-------------------------CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE
Q 017601 204 VN-------------------------GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV 257 (369)
Q Consensus 204 ~~-------------------------~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las 257 (369)
.+ .+.+|+++++|.++.+|+..... +++.++.+| ..-|+.+.||||+ ++|+
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--kpi~rmtgH-q~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--KPITRMTGH-QALVNHVSFSPDGRYIAS 384 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--cchhhhhch-hhheeeEEECCCccEEEE
Confidence 11 23469999999999999977543 688888877 7899999999999 9999
Q ss_pred EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEcCC
Q 017601 258 AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKCSN 336 (369)
Q Consensus 258 gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d 336 (369)
||-|++|++||.++|+.+.+|.|| -..|+.++||. |.++|+|||.|.++++||+++.++.+.+.||..- -.+..++|
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhc-cceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 999999999999999999999999 99999999999 9999999999999999999999999999998721 23334789
Q ss_pred CCEEEEEeCCCcEEEEE
Q 017601 337 RDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd 353 (369)
|..+++|+.|..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999994
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=234.79 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=204.4
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+.+|.+.|+++.|++|+ ..+.|++.+|++.|||.-+..+ .+...++ ..-+-.+||+| ..+.+|
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds----r~ivSaSqDGklIvWDs~TtnK---~haipl~-------s~WVMtCA~sP-Sg~~VA 113 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS----RRIVSASQDGKLIVWDSFTTNK---VHAIPLP-------SSWVMTCAYSP-SGNFVA 113 (343)
T ss_pred EEecccccceeeeEecCCc----CeEEeeccCCeEEEEEcccccc---eeEEecC-------ceeEEEEEECC-CCCeEE
Confidence 3478999999999999984 7999999999999999876532 1111111 11233699999 456777
Q ss_pred EEecccceEEEEeCCcc-----eEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc
Q 017601 166 VARSFSKSIDVYDQDIH-----LRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
.+ +.|+...||++... ++.-+.+. |..-+..+.+ .+++.|++++.|.++.+||+.++ +.+..|.+|
T Consensus 114 cG-GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f----~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH 185 (343)
T KOG0286|consen 114 CG-GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF----LDDNHILTGSGDMTCALWDIETG---QQTQVFHGH 185 (343)
T ss_pred ec-CcCceeEEEecccccccccceeeeeecCccceeEEEEE----cCCCceEecCCCceEEEEEcccc---eEEEEecCC
Confidence 77 99999999987521 12222222 3333333332 23679999999999999999999 888999988
Q ss_pred CCCcEEEEEECC-CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 240 VGDILYAVCSSS-TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 240 ~~~~v~~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
.+.|.+++++| ++ .+++|+.|++.+|||+|.+.+.++|.+| +..|++|.|.| +|.-+++||.|+++|+||++..+
T Consensus 186 -~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 186 -TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred -cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEcc-CCCeeeecCCCceeEEEeecCCc
Confidence 89999999999 77 9999999999999999999999999999 99999999999 99999999999999999999999
Q ss_pred eeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 318 KVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
.+..|.......++.. +..|++|++|..|.++.+||.-.++ .+..|.||-|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L~GHeN 316 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVLAGHEN 316 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEeeccCC
Confidence 9888876543233333 4589999999999999999987665 4566777754
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-32 Score=259.43 Aligned_cols=254 Identities=16% Similarity=0.111 Sum_probs=199.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-CCCccccccccC--------------CCC------CCCC
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-KDVDRLTYSVLP--------------QDC------GVGE 148 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~~~~~~~~~~~~--------------~~~------~~~~ 148 (369)
.-...++|..|++|+ .++|.+-.+-.|++|.++... ..+.......++ ... --++
T Consensus 376 nt~~~v~ca~fSdds----smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDS----SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EcCCcceeEeecCCc----chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 334668899999984 588888888899999998421 000000000000 000 0113
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
+.+.++.|+| +..++++| |.|++||||..........-..|...+-.+++ +|-|-+|+++|.|++.++|.....
T Consensus 452 GPVyg~sFsP-d~rfLlSc-SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F---~P~GyYFatas~D~tArLWs~d~~- 525 (707)
T KOG0263|consen 452 GPVYGCSFSP-DRRFLLSC-SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF---APRGYYFATASHDQTARLWSTDHN- 525 (707)
T ss_pred Cceeeeeecc-cccceeec-cCCcceeeeecccceeEEEecCCCcceeeEEe---cCCceEEEecCCCceeeeeecccC-
Confidence 4577999999 45677887 99999999998754443333334444555553 345679999999999999998876
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
++++.+.+| ...|.|+.|+|+. ++|+||.|++|++||+.+|..++.|.|| +++|++|+||| +|++|+||+.|+.
T Consensus 526 --~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp-~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 526 --KPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSP-CGRYLASGDEDGL 600 (707)
T ss_pred --Cchhhhccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcC-CCceEeecccCCc
Confidence 888888888 7899999999999 9999999999999999999999999999 99999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|++||+.+++.+..+.+|..- .++..+.||..||+|+.|++|++||+....
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999732 234446799999999999999999987643
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4e-30 Score=219.92 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=217.4
Q ss_pred EEEeCCeEEEEEEeCCchh-hhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEE
Q 017601 46 YIASGCHLYKLQVMMDDWF-VSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSK 124 (369)
Q Consensus 46 ~~as~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~ 124 (369)
+-.-..+||.++...+... ++...++.++.++.-+.+ +.....--...|-..+|+|. +..+|++.-+-.+-||+
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K~haipl~s~WVMtCA~sPS----g~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-KVHAIPLPSSWVMTCAYSPS----GNFVACGGLDNKCSIYP 125 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-ceeEEecCceeEEEEEECCC----CCeEEecCcCceeEEEe
Confidence 3344567788888887554 466667766655543221 11111123578999999997 47999998888899999
Q ss_pred ecCCCCC-CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCC
Q 017601 125 LDTSGKD-VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSP 203 (369)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~ 203 (369)
+.....+ ...-+..+..|. +-.+++.|-+ +..|+++ |.|.+..+||+++..+......|...+..+...|-
T Consensus 126 ls~~d~~g~~~v~r~l~gHt-----gylScC~f~d--D~~ilT~-SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHT-----GYLSCCRFLD--DNHILTG-SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPS 197 (343)
T ss_pred cccccccccceeeeeecCcc-----ceeEEEEEcC--CCceEec-CCCceEEEEEcccceEEEEecCCcccEEEEecCCC
Confidence 8854221 111122233332 2234667766 4567777 89999999999866555444455556655554332
Q ss_pred CCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-
Q 017601 204 VNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC- 281 (369)
Q Consensus 204 ~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h- 281 (369)
+++.|++++-|++.+|||+|.+ .++++|.+| ...|++|+|.|+| -+++|++|+++++||+|..+.+..+...
T Consensus 198 --~~ntFvSg~cD~~aklWD~R~~---~c~qtF~gh-esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 198 --DGNTFVSGGCDKSAKLWDVRSG---QCVQTFEGH-ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred --CCCeEEecccccceeeeeccCc---ceeEeeccc-ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 5789999999999999999999 999999988 8999999999999 9999999999999999998888777632
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
...+|++++||. .|++|.+|..|.++.+||.-.++.+-.+.||.+-. ++..++||..+++||.|.+++||.
T Consensus 272 ~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 IICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 135799999999 99999999999999999999999999999998443 333477999999999999999994
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=7.5e-30 Score=217.03 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=187.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|...|+.++.++|+ ....+++.++.+++||+.++.. ...+-+|.. .+.+++|+| +...++++
T Consensus 59 ~~GHsH~v~dv~~s~dg----~~alS~swD~~lrlWDl~~g~~-----t~~f~GH~~-----dVlsva~s~-dn~qivSG 123 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDG----NFALSASWDGTLRLWDLATGES-----TRRFVGHTK-----DVLSVAFST-DNRQIVSG 123 (315)
T ss_pred eeccceEecceEEccCC----ceEEeccccceEEEEEecCCcE-----EEEEEecCC-----ceEEEEecC-CCceeecC
Confidence 56899999999999984 6777888999999999997621 222333332 256899999 45677877
Q ss_pred ecccceEEEEeC-CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 168 RSFSKSIDVYDQ-DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 168 ~s~d~~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
|.|++|++|++ +.+..++....+..-+..+.++|.. +...+++++.|++|++||+++. +..+.+.+| .+.++.
T Consensus 124 -SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~-~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh-~~~v~t 197 (315)
T KOG0279|consen 124 -SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE-SNPIIVSASWDKTVKVWNLRNC---QLRTTFIGH-SGYVNT 197 (315)
T ss_pred -CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC-CCcEEEEccCCceEEEEccCCc---chhhccccc-cccEEE
Confidence 99999999996 3454444333223344444444432 2568999999999999999987 666777777 789999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
+++|||| +.++|+.||.+.+||++.++.+.++. | ...|.+++|+| + ++.+....+..|+|||+.++.++..++-.
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a-~~~v~sl~fsp-n-rywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-A-FDIVNSLCFSP-N-RYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCceeEecc-C-CCeEeeEEecC-C-ceeEeeccCCceEEEeccchhhhhhcccc
Confidence 9999999 99999999999999999999988876 4 68999999999 5 45556667888999999998877777432
Q ss_pred C----------CeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 326 S----------NWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 326 ~----------~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. .......++||..|++|-.|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 1 11222235599999999999999999875
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8e-32 Score=239.41 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=194.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.-+..|+.|.|.|++ .+|.+++..|.+-+|+...-. -...++.|+..+ .++.|++ ++..++++ .
T Consensus 94 Kvkc~V~~v~WtPeG----RRLltgs~SGEFtLWNg~~fn-----FEtilQaHDs~V-----r~m~ws~-~g~wmiSg-D 157 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEG----RRLLTGSQSGEFTLWNGTSFN-----FETILQAHDSPV-----RTMKWSH-NGTWMISG-D 157 (464)
T ss_pred ccccceeeEEEcCCC----ceeEeecccccEEEecCceee-----HHHHhhhhcccc-----eeEEEcc-CCCEEEEc-C
Confidence 345689999999984 799999999999999975331 123346676654 4899999 45566776 8
Q ss_pred ccceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.++.|++|+.... ++.+.. .+...+..+. |+|.+..|+++++||+|+|||.+.. +....+.+| +-.|.|++
T Consensus 158 ~gG~iKyWqpnmnnVk~~~a-hh~eaIRdla---fSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GH-gwdVksvd 229 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNNVKIIQA-HHAEAIRDLA---FSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGH-GWDVKSVD 229 (464)
T ss_pred CCceEEecccchhhhHHhhH-hhhhhhheec---cCCCCceeEEecCCCeEEEEeccCC---chhheeccC-CCCcceec
Confidence 9999999987632 222211 1223444444 4456789999999999999999988 666667877 78999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN 327 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~ 327 (369)
|+|.. +||+||.|..|++||.|+++++.++.+| +..|+.+.|+| ++++|+++|.|..++++|+++-+.++.+++|.
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H-KntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk- 306 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK- 306 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCcchhhhhhhc-cceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcch-
Confidence 99998 9999999999999999999999999999 99999999999 99999999999999999999888999999998
Q ss_pred eeeeeE---cC-CCCEEEEEeCCCcEEEEECCC
Q 017601 328 WLGFSK---CS-NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 328 ~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~ 356 (369)
..+.. .| ...+|.+|+.||.|..|.+..
T Consensus 307 -kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 307 -KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred -hhheeeccccccccceeeccCCCceEEEeccc
Confidence 43333 33 778999999999999999873
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=9.1e-31 Score=232.69 Aligned_cols=242 Identities=16% Similarity=0.145 Sum_probs=197.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
++.|...|.++.|++++ ..+.|+|.+|.|..|+.....- ..++.|. .+.+.+++|+| ++..|++|
T Consensus 134 lQaHDs~Vr~m~ws~~g----~wmiSgD~gG~iKyWqpnmnnV------k~~~ahh----~eaIRdlafSp-nDskF~t~ 198 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNG----TWMISGDKGGMIKYWQPNMNNV------KIIQAHH----AEAIRDLAFSP-NDSKFLTC 198 (464)
T ss_pred hhhhcccceeEEEccCC----CEEEEcCCCceEEecccchhhh------HHhhHhh----hhhhheeccCC-CCceeEEe
Confidence 67999999999999984 7999999999999999875421 1111111 12356899999 66789999
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
|.|++|+|||... ..+.+ ..|...+..++|+|. .+.++++|.|+.|++||.|++ .|+.++.+| ...|.
T Consensus 199 -SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~---kgLiasgskDnlVKlWDprSg---~cl~tlh~H-KntVl 268 (464)
T KOG0284|consen 199 -SDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT---KGLIASGSKDNLVKLWDPRSG---SCLATLHGH-KNTVL 268 (464)
T ss_pred -cCCCeEEEEeccCCchhhee--ccCCCCcceeccCCc---cceeEEccCCceeEeecCCCc---chhhhhhhc-cceEE
Confidence 9999999999753 33333 335556667777663 458888999999999999999 899998877 78999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-E
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-R 323 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~ 323 (369)
++.|+|++ +|+++|.|.+++|+|+|+.+.+.++++| +..|+++.|+|....+|.+|+.|+.|..|.+...+.+..+ .
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~ 347 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP 347 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCCCc
Confidence 99999999 9999999999999999999999999999 9999999999999999999999999999999854444444 3
Q ss_pred cCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCC
Q 017601 324 GDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 324 g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|. ..+.. -|-|.+|++|+.|.++++|.-...
T Consensus 348 AHd--~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 348 AHD--GEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred ccc--cceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 555 33333 457999999999999999976543
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.2e-29 Score=242.45 Aligned_cols=255 Identities=21% Similarity=0.282 Sum_probs=202.8
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|...|.++.|++++ ..+++++.++.+++|+...... .....+..|. .++.+++|+|+ +.+++++ +
T Consensus 157 ~~~~sv~~~~fs~~g----~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~-----~~v~~~~fs~d-~~~l~s~-s 222 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDG----RALAAASSDGLIRIWKLEGIKS---NLLRELSGHT-----RGVSDVAFSPD-GSYLLSG-S 222 (456)
T ss_pred cccCceEEEEEcCCC----CeEEEccCCCcEEEeecccccc---hhhccccccc-----cceeeeEECCC-CcEEEEe-c
Confidence 347899999999985 5799999999999999954321 0111122222 24668999995 4577777 9
Q ss_pred ccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|++|+|||.....+.++++ .|...+..+. |+++++.+++++.|++|+|||++++ +++..+..| .+.|++++
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~---f~p~g~~i~Sgs~D~tvriWd~~~~---~~~~~l~~h-s~~is~~~ 295 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA---FSPDGNLLVSGSDDGTVRIWDVRTG---ECVRKLKGH-SDGISGLA 295 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEE---ecCCCCEEEEecCCCcEEEEeccCC---eEEEeeecc-CCceEEEE
Confidence 99999999995443444444 3555555554 4456778889999999999999998 899999987 78999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCce--eeeeccccccC-ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWS--ALSRWVHCSKY-EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~--~~~~~~~h~~~-~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
|++++ .|++++.|+.|+|||+.++. ++..+.++... .++++.|+| ++.++++++.|+.+++||++.+.+...+.+
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 99999 99999999999999999998 67888877333 599999999 999999999999999999999999999999
Q ss_pred CCCe-eeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 325 DSNW-LGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 325 ~~~~-~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
|..- ..+.. .+.+.++++|++|+.|++||..++. .+..+.||
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-~~~~l~~h 420 (456)
T KOG0266|consen 375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-ILQRLEGH 420 (456)
T ss_pred cCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-hhhhhcCC
Confidence 9842 12211 3389999999999999999999854 56777777
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=223.21 Aligned_cols=245 Identities=16% Similarity=0.194 Sum_probs=204.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|+..|..+-|.|+. .++++++.+++|++||+.++.- ...+++|..+ +..++|+.. +..+|+|
T Consensus 104 l~g~r~~vt~v~~hp~~----~~v~~as~d~tikv~D~~tg~~-----e~~LrGHt~s-----v~di~~~a~-Gk~l~tc 168 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSE----ALVVSASEDATIKVFDTETGEL-----ERSLRGHTDS-----VFDISFDAS-GKYLATC 168 (406)
T ss_pred hhccccceeeeeeccCc----eEEEEecCCceEEEEEccchhh-----hhhhhccccc-----eeEEEEecC-ccEEEec
Confidence 56899999999999984 6888888999999999987621 2334444433 457999984 4677888
Q ss_pred ecccceEEEEeCCcce---EEEEeeeC-CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQDIHL---RTLRTLWY-PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~---~~~~~~~~-~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|.|-++++||.++.. +.+....+ ..++.|.+ -+..+++++.|.+|+.||+.++ -+++++.++ ...
T Consensus 169 -SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P------~gd~ilS~srD~tik~We~~tg---~cv~t~~~h-~ew 237 (406)
T KOG0295|consen 169 -SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP------LGDHILSCSRDNTIKAWECDTG---YCVKTFPGH-SEW 237 (406)
T ss_pred -CCccchhheeHHHHHHHHHHhcCcccceeeEEEEe------cCCeeeecccccceeEEecccc---eeEEeccCc-hHh
Confidence 889899999987543 33332222 23455554 3579999999999999999999 899999987 679
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC---------CC-----CEEEEEECCCeE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI---------DS-----NYIYVQGVDYEV 308 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~---------d~-----~~l~s~s~D~~i 308 (369)
|..+..+.|| ++|+++.|.+|++|=+.++++...+..| +.+|-+++|-|. .+ .++.++|.|++|
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 9999999999 9999999999999999999999999999 999999999773 12 589999999999
Q ss_pred EEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++||+.++.|++++.||.+|. ++...|.|++|+|+.+|+++++||+++++.
T Consensus 317 k~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred EEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 999999999999999999886 455577999999999999999999999875
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=208.76 Aligned_cols=252 Identities=13% Similarity=0.179 Sum_probs=192.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
..+.|+.|.+.||. ..||++. .-+|++||+...... +..+| ..|. ..++.+.|.- ++..++++ |+
T Consensus 39 ~dsqVNrLeiTpdk----~~LAaa~-~qhvRlyD~~S~np~-Pv~t~--e~h~-----kNVtaVgF~~-dgrWMyTg-se 103 (311)
T KOG0315|consen 39 PDSQVNRLEITPDK----KDLAAAG-NQHVRLYDLNSNNPN-PVATF--EGHT-----KNVTAVGFQC-DGRWMYTG-SE 103 (311)
T ss_pred CccceeeEEEcCCc----chhhhcc-CCeeEEEEccCCCCC-ceeEE--eccC-----CceEEEEEee-cCeEEEec-CC
Confidence 35889999999984 4565544 468999999876431 22223 2232 2366899988 55677877 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEEC
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSS 250 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~s 250 (369)
|++++|||+.... .-+.++++..++.+-.+ |.-..|+++..+|.|++||++.. .+-..+......+|.++...
T Consensus 104 Dgt~kIWdlR~~~-~qR~~~~~spVn~vvlh---pnQteLis~dqsg~irvWDl~~~---~c~~~liPe~~~~i~sl~v~ 176 (311)
T KOG0315|consen 104 DGTVKIWDLRSLS-CQRNYQHNSPVNTVVLH---PNQTELISGDQSGNIRVWDLGEN---SCTHELIPEDDTSIQSLTVM 176 (311)
T ss_pred CceEEEEeccCcc-cchhccCCCCcceEEec---CCcceEEeecCCCcEEEEEccCC---ccccccCCCCCcceeeEEEc
Confidence 9999999986421 12334455555554433 33568999999999999999977 55555443335789999999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCC------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEE
Q 017601 251 STG-NIAVAGADRTVTIYDPRR------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAF 322 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~ 322 (369)
||| .++.+...|...+|++-+ -+++.+++.| ..-++.+.+|| |+++||++|.|.+++||+...- +....+
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l 254 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVL 254 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEe
Confidence 999 999999999999999865 3567788899 99999999999 9999999999999999999886 667778
Q ss_pred EcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 323 RGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 323 ~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
.||.+|. ....+.|+++|++|+.|+.+++|+++.++. +....||
T Consensus 255 ~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh 299 (311)
T KOG0315|consen 255 TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGH 299 (311)
T ss_pred ecCCceEEeeeeccCccEEEecCCCCceeecccccCce-eeecCCc
Confidence 8999885 333466999999999999999999999874 3445554
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=219.87 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=197.9
Q ss_pred cccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeE
Q 017601 74 IPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSG 153 (369)
Q Consensus 74 ~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (369)
..++...+.. .-.+.+|++.|++|+|+.. ++.+++++.+-.+.+||.++..+ .......| +.++.+
T Consensus 133 kv~D~~tg~~-e~~LrGHt~sv~di~~~a~----Gk~l~tcSsDl~~~LWd~~~~~~----c~ks~~gh-----~h~vS~ 198 (406)
T KOG0295|consen 133 KVFDTETGEL-ERSLRGHTDSVFDISFDAS----GKYLATCSSDLSAKLWDFDTFFR----CIKSLIGH-----EHGVSS 198 (406)
T ss_pred EEEEccchhh-hhhhhccccceeEEEEecC----ccEEEecCCccchhheeHHHHHH----HHHHhcCc-----ccceee
Confidence 3334444432 2336799999999999875 48999999988899999875311 11112222 234678
Q ss_pred EEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG 231 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~ 231 (369)
++|-|.+ ..++++ +.|.+|+.||.+. ++.++. .++.-+..+. ...||..+++++.|.+|++|-+.++ +
T Consensus 199 V~f~P~g-d~ilS~-srD~tik~We~~tg~cv~t~~--~h~ewvr~v~---v~~DGti~As~s~dqtl~vW~~~t~---~ 268 (406)
T KOG0295|consen 199 VFFLPLG-DHILSC-SRDNTIKAWECDTGYCVKTFP--GHSEWVRMVR---VNQDGTIIASCSNDQTLRVWVVATK---Q 268 (406)
T ss_pred EEEEecC-Ceeeec-ccccceeEEecccceeEEecc--CchHhEEEEE---ecCCeeEEEecCCCceEEEEEeccc---h
Confidence 9999965 678888 9999999999864 444433 2333333333 3346666777889999999999988 7
Q ss_pred eeeeeeccCCCcEEEEEECCC--------------C--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 232 CLHRICGSVGDILYAVCSSST--------------G--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~--------------g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
|...+..| ..+|-|++|-|. + .+++++.|++||+||+.++.++.++.+| ...|.+++|+| .
T Consensus 269 ~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p-~ 345 (406)
T KOG0295|consen 269 CKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSP-G 345 (406)
T ss_pred hhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcC-C
Confidence 77777766 688999998763 2 7889999999999999999999999999 99999999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEEC
Q 017601 296 SNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~ 354 (369)
|+||+|+..|+++++||+++.+|+..+..|..+......+ +..++++|+-|.++++|..
T Consensus 346 Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 346 GKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999998444444433 6779999999999999974
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.6e-29 Score=235.58 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=200.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|+..|.+++...+ +.+++++++|..+++|.++...... .......+|... +.+++++..+...|+++
T Consensus 361 i~GH~e~vlSL~~~~~----g~llat~sKD~svilWr~~~~~~~~-~~~a~~~gH~~s-----vgava~~~~~asffvsv 430 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSS----GDLLATGSKDKSVILWRLNNNCSKS-LCVAQANGHTNS-----VGAVAGSKLGASFFVSV 430 (775)
T ss_pred EeCchhheeeeeeccc----CcEEEEecCCceEEEEEecCCcchh-hhhhhhcccccc-----cceeeecccCccEEEEe
Confidence 4599999999994444 3799999999999999995432111 111223344433 34788888788888888
Q ss_pred ecccceEEEEeCCc-------ceEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 168 RSFSKSIDVYDQDI-------HLRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-------~~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
|.|.++++|++++ .+...+ ...|...++.+.. +|++..++++|.|.+.+||++... ..+.++.+
T Consensus 431 -S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai---a~ndkLiAT~SqDktaKiW~le~~---~l~~vLsG 503 (775)
T KOG0319|consen 431 -SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI---APNDKLIATGSQDKTAKIWDLEQL---RLLGVLSG 503 (775)
T ss_pred -cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe---cCCCceEEecccccceeeecccCc---eEEEEeeC
Confidence 9999999999865 111111 1125556666663 345667888999999999999966 78899998
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
| ...|+|+.|+|.. .+||+|.|+|||||.+.+..++.+|.|| ...|..+.|-. ++..|+|++.||.+++|++++++
T Consensus 504 H-~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~-~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 504 H-TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred C-ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeee-CCcEEEeccCCCcEEEEeccchh
Confidence 8 8899999999999 9999999999999999999999999999 99999999999 99999999999999999999999
Q ss_pred eeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 318 KVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 318 ~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|..++.+|.. ...+...+...++++|+.||.|.+|.-.|.
T Consensus 581 C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 581 CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9999999982 223444567789999999999999965443
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.4e-29 Score=234.38 Aligned_cols=275 Identities=16% Similarity=0.202 Sum_probs=201.7
Q ss_pred EeCCchhhhcC--CCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc
Q 017601 58 VMMDDWFVSEG--KDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL 135 (369)
Q Consensus 58 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~ 135 (369)
+...+.+++-| +-+.+..+++|.. .-++..++|-..|++++++||+ .++|++..||+|++||...+ .+
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSpDg----q~iaTG~eDgKVKvWn~~Sg-----fC 384 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSPDG----QLIATGAEDGKVKVWNTQSG-----FC 384 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECCCC----cEEEeccCCCcEEEEeccCc-----eE
Confidence 33335555333 2233333444433 2456678999999999999994 89999999999999999865 22
Q ss_pred cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc
Q 017601 136 TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE 215 (369)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~ 215 (369)
...+..|.. +++++.|+.. +..+.++ |.||+|+.||... -+.++++..|..+.|.. ...+|.|..+.+++.
T Consensus 385 ~vTFteHts-----~Vt~v~f~~~-g~~llss-SLDGtVRAwDlkR-YrNfRTft~P~p~Qfsc-vavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 385 FVTFTEHTS-----GVTAVQFTAR-GNVLLSS-SLDGTVRAWDLKR-YRNFRTFTSPEPIQFSC-VAVDPSGELVCAGAQ 455 (893)
T ss_pred EEEeccCCC-----ceEEEEEEec-CCEEEEe-ecCCeEEeeeecc-cceeeeecCCCceeeeE-EEEcCCCCEEEeecc
Confidence 233333433 4679999984 4456666 8999999999853 34556666665554433 223454556666666
Q ss_pred CC-eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEc
Q 017601 216 GC-QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 216 d~-~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~s 292 (369)
|. .|.+|++++| +.+-.+.+| .++|.+++|+|++ .||+||+|+||++||+-.. ..+.++. + ...++.++|+
T Consensus 456 d~F~IfvWS~qTG---qllDiLsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i-~sdvl~vsfr 529 (893)
T KOG0291|consen 456 DSFEIFVWSVQTG---QLLDILSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-I-RSDVLAVSFR 529 (893)
T ss_pred ceEEEEEEEeecC---eeeehhcCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-e-ccceeEEEEc
Confidence 64 6999999999 888889988 8999999999999 9999999999999998653 3444544 3 5789999999
Q ss_pred CCCCCEEEEEECCCeEEEEECcCCceeEEEEcC---------------------CCeeeeeEcCCCCEEEEEeCCCcEEE
Q 017601 293 SIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD---------------------SNWLGFSKCSNRDVLGGWSDSGSIFV 351 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~---------------------~~~~~~~~~~d~~~l~sgs~dg~I~i 351 (369)
| ||+.|+++..||.|.+||.+.+..+..+.|- ..+..+..++||..|++|++.+.|.+
T Consensus 530 P-dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCi 608 (893)
T KOG0291|consen 530 P-DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICI 608 (893)
T ss_pred C-CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEE
Confidence 9 9999999999999999999875444333221 11122333569999999999999999
Q ss_pred EECCCCc
Q 017601 352 ADVVAKE 358 (369)
Q Consensus 352 Wd~~~~~ 358 (369)
|++.++-
T Consensus 609 Y~v~~~v 615 (893)
T KOG0291|consen 609 YDVPEGV 615 (893)
T ss_pred EECchhh
Confidence 9998764
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.6e-29 Score=220.17 Aligned_cols=244 Identities=17% Similarity=0.184 Sum_probs=199.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..+|-+.|.|+++.|. ...+++++.|+++.|||+.++ ..+..+.+|... +.++++|+..+ ++.++
T Consensus 147 i~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg-----~LkltltGhi~~-----vr~vavS~rHp-YlFs~ 211 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATG-----QLKLTLTGHIET-----VRGVAVSKRHP-YLFSA 211 (460)
T ss_pred hhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccC-----eEEEeecchhhe-----eeeeeecccCc-eEEEe
Confidence 5699999999999996 379999999999999999976 223344444332 44899999665 55566
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|+-||+. +.++.++ .|-..+-.+..+| -...|++++.|.++++||+|+. ..+..+.+| ..+|.
T Consensus 212 -gedk~VKCwDLe~nkvIR~Yh--GHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr---~~V~~l~GH-~~~V~ 281 (460)
T KOG0285|consen 212 -GEDKQVKCWDLEYNKVIRHYH--GHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTR---ASVHVLSGH-TNPVA 281 (460)
T ss_pred -cCCCeeEEEechhhhhHHHhc--cccceeEEEeccc---cceeEEecCCcceEEEeeeccc---ceEEEecCC-CCcce
Confidence 799999999986 3344332 2344454554433 2458999999999999999999 889999988 89999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++.+.|.. .+++||.|++|++||++.++...++..| +..|.+++.+| ....+||+|.|. |+.|++..++.+..+.|
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSG 358 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhcccc
Confidence 99999988 9999999999999999999999999999 99999999999 889999998874 89999999999999999
Q ss_pred CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|..........+..++++|++.|.+.+||.++|-+
T Consensus 359 h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 359 HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 98332222233667999999999999999998854
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-29 Score=209.98 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=184.2
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
-.+.+..++|++.. -..++++..+|.+++||+.....++. ..+.|... +.++.|++.....++++ |+
T Consensus 59 ~~D~LfdV~Wse~~---e~~~~~a~GDGSLrl~d~~~~s~Pi~----~~kEH~~E-----V~Svdwn~~~r~~~lts-SW 125 (311)
T KOG0277|consen 59 TEDGLFDVAWSENH---ENQVIAASGDGSLRLFDLTMPSKPIH----KFKEHKRE-----VYSVDWNTVRRRIFLTS-SW 125 (311)
T ss_pred cccceeEeeecCCC---cceEEEEecCceEEEeccCCCCcchh----HHHhhhhh-----eEEeccccccceeEEee-cc
Confidence 35788999999864 35777788899999999775533222 22333322 45899999888888888 99
Q ss_pred cceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|++|+|||.... ++++. .+...+-...++|.. .+.++++|.|++++|||+|... +.+. +..| ...|.|+.
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~~sp~~--~nlfas~Sgd~~l~lwdvr~~g--k~~~-i~ah-~~Eil~cd 197 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFN--GHNSCIYQAAFSPHI--PNLFASASGDGTLRLWDVRSPG--KFMS-IEAH-NSEILCCD 197 (311)
T ss_pred CCceEeecCCCCcceEeec--CCccEEEEEecCCCC--CCeEEEccCCceEEEEEecCCC--ceeE-EEec-cceeEeec
Confidence 999999997643 33332 244444444544433 3688889999999999999762 4444 5555 47999999
Q ss_pred ECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEc
Q 017601 249 SSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g 324 (369)
|+.-. .|+||+.|+.|+.||+|+ ..++..+.+| ...|..|.|||+....|+|+|.|-++||||... ..++.++.-
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 99877 899999999999999999 6788999999 999999999998889999999999999999985 345555555
Q ss_pred CCCee-eeeEcC-CCCEEEEEeCCCcEEEEEC
Q 017601 325 DSNWL-GFSKCS-NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 325 ~~~~~-~~~~~~-d~~~l~sgs~dg~I~iWd~ 354 (369)
|+.+. ++..+. ++.++|+.+.|+.++||+.
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEeccccccccCceeeecccccceeeecc
Confidence 66221 111122 7889999999999999984
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=7.1e-30 Score=243.66 Aligned_cols=204 Identities=19% Similarity=0.152 Sum_probs=169.6
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+++|.+.|...+|+|+ ...|.+++.|+.+++|.+.+... .-...+|..+ +..+.|+| .+.+||
T Consensus 445 ~~L~GH~GPVyg~sFsPd----~rfLlScSED~svRLWsl~t~s~-----~V~y~GH~~P-----VwdV~F~P-~GyYFa 509 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPD----RRFLLSCSEDSSVRLWSLDTWSC-----LVIYKGHLAP-----VWDVQFAP-RGYYFA 509 (707)
T ss_pred EEeecCCCceeeeeeccc----ccceeeccCCcceeeeeccccee-----EEEecCCCcc-----eeeEEecC-CceEEE
Confidence 347899999999999998 47999999999999999986521 1112233322 33799999 678999
Q ss_pred EEecccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
++ |.|++-++|..+. ..+++.+. |-..+.++.++ |+..+++++|.|.+||+||+.++ ..++.|.+| .++|
T Consensus 510 ta-s~D~tArLWs~d~-~~PlRifaghlsDV~cv~FH---PNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH-~~~V 580 (707)
T KOG0263|consen 510 TA-SHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFH---PNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGH-KGPV 580 (707)
T ss_pred ec-CCCceeeeeeccc-CCchhhhcccccccceEEEC---CcccccccCCCCceEEEEEcCCC---cEEEEecCC-CCce
Confidence 99 9999999998753 22233222 33344444433 34668999999999999999999 889999988 8999
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.+++|||+| +||+|+.|+.|++||+.+++++.++.+| ++.|.++.||. ||..||++|.|++|++||+..
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSR-DGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEec-CCCEEEecCCCCeEEEEEchh
Confidence 999999999 9999999999999999999999999999 99999999999 999999999999999999976
No 24
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-29 Score=208.92 Aligned_cols=253 Identities=16% Similarity=0.189 Sum_probs=194.3
Q ss_pred eEEEEeecCCCCceEEEEE-----ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 96 QSIALAETDSSGYMVLGSV-----DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~-----d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+++.|||=. +++..+|++ -..|++++.+++....-.....|.. +.+..+++|++..+..++++ +.
T Consensus 12 ysvqfSPf~-~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~--------~D~LfdV~Wse~~e~~~~~a-~G 81 (311)
T KOG0277|consen 12 YSVQFSPFV-ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT--------EDGLFDVAWSENHENQVIAA-SG 81 (311)
T ss_pred ceeEecccc-cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec--------ccceeEeeecCCCcceEEEE-ec
Confidence 577888842 234555554 3467888888863211111112221 22355899999888888888 89
Q ss_pred cceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
||+++|||......+++..+ |...+-.+.+.+. ....+++.|.|++|+|||...+ +.+.++.++ ...|+...|
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~--~r~~~ltsSWD~TiKLW~~~r~---~Sv~Tf~gh-~~~Iy~a~~ 155 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV--RRRIFLTSSWDGTIKLWDPNRP---NSVQTFNGH-NSCIYQAAF 155 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccc--cceeEEeeccCCceEeecCCCC---cceEeecCC-ccEEEEEec
Confidence 99999999876666665544 4455555555432 3457888899999999999877 889999988 889999999
Q ss_pred CCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCC
Q 017601 250 SSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDS 326 (369)
Q Consensus 250 sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~ 326 (369)
+|.. .++++|.|+++++||+|.......+..| ..+|+++.|+..+.+.|++++.|+.||+||+++ ...++.+.||.
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG 234 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence 9987 9999999999999999984444448999 899999999998999999999999999999998 55788889998
Q ss_pred CeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 327 NWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 327 ~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
..+.+ +| -..+|+|+|.|-+++|||...++..+++.+-|
T Consensus 235 --~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 235 --LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred --eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc
Confidence 66665 33 56789999999999999998777655555444
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=4.7e-28 Score=218.96 Aligned_cols=239 Identities=11% Similarity=0.082 Sum_probs=197.2
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...|++|+|+.++ ..||++..+|.+++|+.+... ...+..| ++++.+|.|+. .+.+|+++ +.|
T Consensus 235 nkdVT~L~Wn~~G----~~LatG~~~G~~riw~~~G~l------~~tl~~H-----kgPI~slKWnk-~G~yilS~-~vD 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG----TLLATGSEDGEARIWNKDGNL------ISTLGQH-----KGPIFSLKWNK-KGTYILSG-GVD 297 (524)
T ss_pred cCCcceEEecCCC----CeEEEeecCcEEEEEecCchh------hhhhhcc-----CCceEEEEEcC-CCCEEEec-cCC
Confidence 4689999999874 799999999999999987431 1112222 34577899999 55678887 899
Q ss_pred ceEEEEeCC--cceEEEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+++-|||.- ...+.+.....+ ..+.+.. ...|++++.|+.|+++-+... .++.++.+| .+.|+++.
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-------~~~F~ts~td~~i~V~kv~~~---~P~~t~~GH-~g~V~alk 366 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQS-------NDEFATSSTDGCIHVCKVGED---RPVKTFIGH-HGEVNALK 366 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEec-------CceEeecCCCceEEEEEecCC---Ccceeeecc-cCceEEEE
Confidence 999999984 333334333344 3466665 468999999999999998876 788999886 79999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC--------CCCEEEEEECCCeEEEEECcCCcee
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI--------DSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~--------d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
|+|.| +|+++|.|+|++||........+.+.+| ..+|..+.|+|. ++..+++++.|++|++||+..+.++
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 99999 9999999999999999999999999999 999999999983 2457999999999999999999999
Q ss_pred EEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 320 FAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 320 ~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|..|. +...+..+++|+++|+|+.||.|.+|+.++++.
T Consensus 446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 9998887 334455577999999999999999999998864
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.9e-29 Score=230.58 Aligned_cols=246 Identities=13% Similarity=0.145 Sum_probs=199.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|...|.++.|+|.+ .-+|++ =-+|+|.+|+.++..- ..++.+ .+..+....|-+ ..+.++++
T Consensus 9 ~~~rSdRVKsVd~HPte---Pw~la~-LynG~V~IWnyetqtm---VksfeV-------~~~PvRa~kfia-RknWiv~G 73 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTE---PWILAA-LYNGDVQIWNYETQTM---VKSFEV-------SEVPVRAAKFIA-RKNWIVTG 73 (794)
T ss_pred hhccCCceeeeecCCCC---ceEEEe-eecCeeEEEeccccee---eeeeee-------cccchhhheeee-ccceEEEe
Confidence 34588999999999986 555555 4568999999986521 112222 222344677776 55678887
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|..|++|+.++..+.-....|+.-+..+..+|..| .++++|+|-+|++||....- .+.+++.+| ...|.++
T Consensus 74 -sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P---~vLtsSDDm~iKlW~we~~w--a~~qtfeGH-~HyVMqv 146 (794)
T KOG0276|consen 74 -SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP---YVLTSSDDMTIKLWDWENEW--ACEQTFEGH-EHYVMQV 146 (794)
T ss_pred -cCCceEEEEecccceeeEEeeccccceeeeeecCCCC---eEEecCCccEEEEeeccCce--eeeeEEcCc-ceEEEEE
Confidence 9999999999876554444455777777777776544 99999999999999998663 788899988 8899999
Q ss_pred EECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-CCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 248 CSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI-DSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+|.. .+|+++-|+|||||.+....+..++.+| ...|+++.|-+. |..+|+||+.|.+|+|||.++..|++++.|
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG 225 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG 225 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc
Confidence 999998 9999999999999999999999999999 999999999762 345899999999999999999999999999
Q ss_pred CCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|. .++.. .|.=.+|+|||+||+++||+..|-+
T Consensus 226 Ht--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 226 HT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cc--ccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 98 55554 3466789999999999999988754
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-27 Score=216.28 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=194.5
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+-.|++.|.+|.|+.+ +..|++++.++++.+||..++.. ...+.+ |..+ -..|.|- +...|+
T Consensus 270 ~tl~~HkgPI~slKWnk~----G~yilS~~vD~ttilwd~~~g~~---~q~f~~--~s~~-----~lDVdW~--~~~~F~ 333 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKK----GTYILSGGVDGTTILWDAHTGTV---KQQFEF--HSAP-----ALDVDWQ--SNDEFA 333 (524)
T ss_pred hhhhccCCceEEEEEcCC----CCEEEeccCCccEEEEeccCceE---EEeeee--ccCC-----ccceEEe--cCceEe
Confidence 345689999999999886 37899999999999999975521 111221 2111 0135554 345688
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++ +.|+.|+++.++ .++.++.. |...++.+.+ +|.+..|+++|+|++++||.+... .+.+.+..| ...
T Consensus 334 ts-~td~~i~V~kv~~~~P~~t~~G--H~g~V~alk~---n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~H-ske 403 (524)
T KOG0273|consen 334 TS-STDGCIHVCKVGEDRPVKTFIG--HHGEVNALKW---NPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAH-SKE 403 (524)
T ss_pred ec-CCCceEEEEEecCCCcceeeec--ccCceEEEEE---CCCCceEEEecCCCeeEeeecCCC---cchhhhhhh-ccc
Confidence 88 899999999765 55665544 6667777775 344668888999999999998877 788888776 689
Q ss_pred EEEEEECCCC----------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 244 LYAVCSSSTG----------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 244 v~~v~~sp~g----------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
|+.+.|+|+| .+++++.|++|++||+..+.++++|..| +.+|.+|+||| +++++|+|+.|+.|.+|+.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~-~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSP-NGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecC-CCcEEEecCCCCeeEeccc
Confidence 9999999975 5899999999999999999999999999 99999999999 9999999999999999999
Q ss_pred cCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 314 RESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 314 ~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+++++.+.+++......+....+|+.|..+-.|+.+.+-|++
T Consensus 482 ~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999887733333335588999999999999998875
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.2e-28 Score=229.05 Aligned_cols=257 Identities=17% Similarity=0.111 Sum_probs=191.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..|..+||.+++|-.++ -..+|.+.+.+.+++++..+... .-+.+|... +.+++... .+-+++++
T Consensus 319 ivG~ndEI~Dm~~lG~e---~~~laVATNs~~lr~y~~~~~~c------~ii~GH~e~-----vlSL~~~~-~g~llat~ 383 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPE---ESHLAVATNSPELRLYTLPTSYC------QIIPGHTEA-----VLSLDVWS-SGDLLATG 383 (775)
T ss_pred hcCCchhheeeeecCCc---cceEEEEeCCCceEEEecCCCce------EEEeCchhh-----eeeeeecc-cCcEEEEe
Confidence 45888999999997543 35778888889999997765421 133444432 33566333 23478888
Q ss_pred ecccceEEEEeCCc-ceEEEE---eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee------e
Q 017601 168 RSFSKSIDVYDQDI-HLRTLR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI------C 237 (369)
Q Consensus 168 ~s~d~~i~lwd~~~-~~~~~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~------~ 237 (369)
|.|+++++|..+. ..+.+. ...|...+..+.....+ ...|+++|.|+++++|++...+.......+ .
T Consensus 384 -sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~--asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 384 -SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG--ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred -cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC--ccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9999999996632 111111 11133333333322222 257888999999999999863211111111 1
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.| ...|+|++++|+. ++||||.|++.+||++...+.+.++.|| +..|.+|.|+| ..+.++|+|.|.+|+||.+.+.
T Consensus 461 aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 461 AH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred hh-cccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecc-ccceeEeccCCceEEEEEeccc
Confidence 22 5889999999999 9999999999999999999999999999 99999999999 8899999999999999999999
Q ss_pred ceeEEEEcCCCeeeeeEcC---CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 317 SKVFAFRGDSNWLGFSKCS---NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 317 ~~~~~~~g~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
.|+.+|.||. ..+.++. +|..|+|++.||.|++|+++++++ +.++.+|.
T Consensus 538 SClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~ 589 (775)
T KOG0319|consen 538 SCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHN 589 (775)
T ss_pred eeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhcc
Confidence 9999999999 5555533 899999999999999999999975 45677664
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1e-26 Score=240.18 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=189.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|.+.|.+++|+|++ .++|+++.++.|++|+............+.... ......+.+++|+|.....+|++
T Consensus 479 ~~~~~~~V~~i~fs~dg----~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG----EFFATAGVNKKIKIFECESIIKDGRDIHYPVVE---LASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred ccCCCCcEEEEEECCCC----CEEEEEeCCCEEEEEECCcccccccccccceEE---ecccCceeeEEeccCCCCEEEEE
Confidence 34699999999999984 689999999999999976421100000000000 00112356899998767788888
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
+.|++|+|||............|...+..+.+.+ +++..|++++.|++|++||++++ .++..+..+ ..+.++
T Consensus 552 -~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~~~---~~~~~~~~~--~~v~~v 623 (793)
T PLN00181 552 -NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSINQG---VSIGTIKTK--ANICCV 623 (793)
T ss_pred -eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECCCC---cEEEEEecC--CCeEEE
Confidence 8999999999864322222223445555555433 24567889999999999999987 777777766 789999
Q ss_pred EEC-CCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC------Cce
Q 017601 248 CSS-STG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE------SSK 318 (369)
Q Consensus 248 ~~s-p~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~------~~~ 318 (369)
+|+ ++| .|++|+.|++|++||+++.. ++..+.+| ...|+++.|. ++.+|+++|.|++|++||++. ..+
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 995 457 99999999999999999865 57788899 9999999996 578999999999999999974 357
Q ss_pred eEEEEcCCCeee-eeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 319 VFAFRGDSNWLG-FSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 319 ~~~~~g~~~~~~-~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+..+.+|..... +...+++.+|++|+.|+.|++|+....
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 788999985433 333568899999999999999997644
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=214.09 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=197.2
Q ss_pred eEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 52 HLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
.||.++.. ++.+|+..++.....++..... ....+.+|+|.|-|+.|.. .++.+++++.+|++||++++ +.
T Consensus 199 gVYClQYD-D~kiVSGlrDnTikiWD~n~~~-c~~~L~GHtGSVLCLqyd~------rviisGSSDsTvrvWDv~tg-e~ 269 (499)
T KOG0281|consen 199 GVYCLQYD-DEKIVSGLRDNTIKIWDKNSLE-CLKILTGHTGSVLCLQYDE------RVIVSGSSDSTVRVWDVNTG-EP 269 (499)
T ss_pred ceEEEEec-chhhhcccccCceEEeccccHH-HHHhhhcCCCcEEeeeccc------eEEEecCCCceEEEEeccCC-ch
Confidence 34444532 2445566666554333433333 2223679999999999964 59999999999999999976 21
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce--EEEEe-eeCCcceeeeccCCCCCCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL--RTLRT-LWYPSSLNFVQNLSPVNGGP 208 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~ 208 (369)
+. .+-.|- +.+.++.|+. ++++++ |.|.+|.+||..... ...+. ..|..+++.+++ ++.
T Consensus 270 l~----tlihHc-----eaVLhlrf~n---g~mvtc-SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf-----d~k 331 (499)
T KOG0281|consen 270 LN----TLIHHC-----EAVLHLRFSN---GYMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-----DDK 331 (499)
T ss_pred hh----HHhhhc-----ceeEEEEEeC---CEEEEe-cCCceeEEEeccCchHHHHHHHHhhhhhheeeecc-----ccc
Confidence 11 111111 1245788865 578888 999999999986322 11111 235556666664 456
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
++++++.|.+|++|++.+. .++.++.+| ...|-|+-+ .| ++++||.|.+|++||+..|.++..++|| +.-|.
T Consensus 332 yIVsASgDRTikvW~~st~---efvRtl~gH-kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH-EeLvR 404 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTC---EFVRTLNGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVR 404 (499)
T ss_pred eEEEecCCceEEEEeccce---eeehhhhcc-cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch-HHhhh
Confidence 8999999999999999999 899999887 667777654 56 8999999999999999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCc---------eeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESS---------KVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~---------~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
++.|.. +.++||+.||+|++||+..+. |+.++..|+ ..+..+. |...|++.+.|.+|-|||+-++
T Consensus 405 ciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs--gRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 405 CIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS--GRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred heeecC---ceeeeccccceEEEEecccccCCcccccchHHHhhhhcc--ceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 999965 899999999999999998742 444455555 2233333 7888999999999999998776
Q ss_pred c
Q 017601 358 E 358 (369)
Q Consensus 358 ~ 358 (369)
-
T Consensus 480 ~ 480 (499)
T KOG0281|consen 480 P 480 (499)
T ss_pred C
Confidence 3
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=6.2e-29 Score=217.12 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=181.0
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
....|+|+.|..+ .+.|+..+.+|.+||...- ...+.+.+|. |.+.++.|.. ..++++ |.
T Consensus 196 ~skgVYClQYDD~------kiVSGlrDnTikiWD~n~~-----~c~~~L~GHt-----GSVLCLqyd~---rviisG-SS 255 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSL-----ECLKILTGHT-----GSVLCLQYDE---RVIVSG-SS 255 (499)
T ss_pred cCCceEEEEecch------hhhcccccCceEEeccccH-----HHHHhhhcCC-----CcEEeeeccc---eEEEec-CC
Confidence 4578999999653 7888889999999998743 2344455553 3455777754 366666 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|.+|++||.. ..+.++. .|...+--+. ++ .+.+++++.|.++.+||+.......+.+.+.+| ...|+.+.
T Consensus 256 DsTvrvWDv~tge~l~tli--hHceaVLhlr---f~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVd 327 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLI--HHCEAVLHLR---FS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVD 327 (499)
T ss_pred CceEEEEeccCCchhhHHh--hhcceeEEEE---Ee--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeec
Confidence 9999999975 3333321 1222222222 11 369999999999999999877444444556676 78999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW 328 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~ 328 (369)
|+.. +++++|.|++|++|++.+++.+.++.+| +..|-++.+ .+++++|||.|.+|++||+..|.+++.++||..
T Consensus 328 fd~k-yIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe- 401 (499)
T KOG0281|consen 328 FDDK-YIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE- 401 (499)
T ss_pred cccc-eEEEecCCceEEEEeccceeeehhhhcc-cccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHH-
Confidence 8533 9999999999999999999999999999 888888877 559999999999999999999999999999982
Q ss_pred eeeeEcC--CCCEEEEEeCCCcEEEEECCCCcch
Q 017601 329 LGFSKCS--NRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 329 ~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
+..|- |.+.|+||..||+|+|||+.++..+
T Consensus 402 --LvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 402 --LVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred --hhhheeecCceeeeccccceEEEEecccccCC
Confidence 22332 8899999999999999999887643
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=224.42 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=206.3
Q ss_pred eEEEEEEeCCchhhhcC-CCccccccCccccc-ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC
Q 017601 52 HLYKLQVMMDDWFVSEG-KDSLLIPEQTPVMD-SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG 129 (369)
Q Consensus 52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~ 129 (369)
.+..+++..++..+... .+.+.+.+...... ....++.+|...|++++|+|++ ..+++++.++++++||+....
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~----~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG----SYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC----cEEEEecCCceEEEeeccCCC
Confidence 34445666666665333 34444433332222 1333457899999999999984 699999999999999994321
Q ss_pred CCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCC
Q 017601 130 KDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 207 (369)
...+.+.+|... +.+++|+|.+ .+++++ +.|++|+|||... .++.+.. |...+..+. +++++
T Consensus 237 ----~~~~~l~gH~~~-----v~~~~f~p~g-~~i~Sg-s~D~tvriWd~~~~~~~~~l~~--hs~~is~~~---f~~d~ 300 (456)
T KOG0266|consen 237 ----RNLKTLKGHSTY-----VTSVAFSPDG-NLLVSG-SDDGTVRIWDVRTGECVRKLKG--HSDGISGLA---FSPDG 300 (456)
T ss_pred ----eEEEEecCCCCc-----eEEEEecCCC-CEEEEe-cCCCcEEEEeccCCeEEEeeec--cCCceEEEE---ECCCC
Confidence 112334455433 4689999976 788888 9999999999874 4444433 444555554 34578
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC-cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccC-
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD-ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKY- 284 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~- 284 (369)
..|++++.|+.|+|||+.++... ++..+...... ++++++|+|++ +++++..|+++++||++++.....+.+| ..
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~-~~~ 378 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH-SNL 378 (456)
T ss_pred CEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc-CCc
Confidence 88888988999999999998311 45555544223 69999999999 9999999999999999999999999999 54
Q ss_pred --ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC-CCeeeeeE---cCCCCEEEEEe--CCCcEEEEECC
Q 017601 285 --EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD-SNWLGFSK---CSNRDVLGGWS--DSGSIFVADVV 355 (369)
Q Consensus 285 --~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~-~~~~~~~~---~~d~~~l~sgs--~dg~I~iWd~~ 355 (369)
.+.+..+++ .+.++++++.|+.|++||+.++..+..+.+| . ..+.. .+...++++++ .|+.+++|...
T Consensus 379 ~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~--~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 379 VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK--AAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceeEecccccC-CCCeEEEEeCCceEEEEeCCccchhhhhcCCCC--CceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 344555677 8999999999999999999999888999999 4 22222 33778899888 78999999753
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=219.55 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=189.4
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+..+.+|+..|.+|.|.|-. ..+++|++.++.|++|++-... .......+|..+ +..++|++ .+..+
T Consensus 207 ~~~~~gH~kgvsai~~fp~~---~hLlLS~gmD~~vklW~vy~~~----~~lrtf~gH~k~-----Vrd~~~s~-~g~~f 273 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKK---GHLLLSGGMDGLVKLWNVYDDR----RCLRTFKGHRKP-----VRDASFNN-CGTSF 273 (503)
T ss_pred eeeccCCccccchhhhccce---eeEEEecCCCceEEEEEEecCc----ceehhhhcchhh-----hhhhhccc-cCCee
Confidence 34467999999999999953 6899999999999999998532 122333445444 34799999 45567
Q ss_pred EEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 165 AVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
.++ |+|+.|++||++ +....+++..-+.++.|-+ ++ +.+++++.|+.|+.||+|++ +.++.+..+ -
T Consensus 274 LS~-sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~p------d~~n~fl~G~sd~ki~~wDiRs~---kvvqeYd~h-L 342 (503)
T KOG0282|consen 274 LSA-SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHP------DNQNIFLVGGSDKKIRQWDIRSG---KVVQEYDRH-L 342 (503)
T ss_pred eee-ecceeeeeeccccceEEEEEecCCCceeeecCC------CCCcEEEEecCCCcEEEEeccch---HHHHHHHhh-h
Confidence 777 899999999985 5556665554555555543 34 68889999999999999999 788888766 7
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--------------------------------------------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-------------------------------------------- 276 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-------------------------------------------- 276 (369)
+.|+.+.|-++| ++++.++|++++||+.+...++.
T Consensus 343 g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH
Confidence 899999999999 99999999999999987432211
Q ss_pred --eccccc-cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcC-CCCEEEEEeCCCcEEE
Q 017601 277 --RWVHCS-KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCS-NRDVLGGWSDSGSIFV 351 (369)
Q Consensus 277 --~~~~h~-~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~-d~~~l~sgs~dg~I~i 351 (369)
.++||. .+.-..|.||| ||++|+||..||.+.+||+++-+++..+.+|. ...++..-| ....+|+++.||.|++
T Consensus 423 kK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred hhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 123441 13346799999 99999999999999999999999999999985 222333344 6788999999999999
Q ss_pred EE
Q 017601 352 AD 353 (369)
Q Consensus 352 Wd 353 (369)
|+
T Consensus 502 wd 503 (503)
T KOG0282|consen 502 WD 503 (503)
T ss_pred cC
Confidence 96
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.4e-26 Score=202.17 Aligned_cols=277 Identities=17% Similarity=0.222 Sum_probs=199.6
Q ss_pred EeCCeEEEEEEeCCchhhhc-CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec
Q 017601 48 ASGCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD 126 (369)
Q Consensus 48 as~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~ 126 (369)
.--+.||++...+...++.. |.+...-.+++.... ...++.+|++.|.++.|+.|+ .+||++|-+|.|++|+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~Fshdg----tlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDG----TLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCc----eEEEecCCCccEEEEEcc
Confidence 34455667777776666644 344433333333343 556688999999999999984 899999999999999998
Q ss_pred CCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCC
Q 017601 127 TSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPV 204 (369)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 204 (369)
++.. ...+. ....+..| +.|+| ...+++.+ +.|+.+-+|.++.. .+.+.. +...+ .+..+.
T Consensus 137 tg~~-----~~~~~---~e~~dieW--l~WHp-~a~illAG-~~DGsvWmw~ip~~~~~kv~~G--h~~~c---t~G~f~ 199 (399)
T KOG0296|consen 137 TGGE-----QWKLD---QEVEDIEW--LKWHP-RAHILLAG-STDGSVWMWQIPSQALCKVMSG--HNSPC---TCGEFI 199 (399)
T ss_pred cCce-----EEEee---cccCceEE--EEecc-cccEEEee-cCCCcEEEEECCCcceeeEecC--CCCCc---cccccc
Confidence 7632 12221 11222235 89999 44466666 89999999998753 222222 22222 223345
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--------------------------------------------
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-------------------------------------------- 240 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-------------------------------------------- 240 (369)
|+|.+++++.+||+|++||.+++ +++.++....
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg---~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTG---QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred CCCceEEEEecCceEEEEecCCC---ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 67889999999999999999988 5655544100
Q ss_pred ------CCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 241 ------GDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 241 ------~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
...+.|+.|.|-. +.|+|+-||+|.|||+.+.++.+.+. | ...|+.+.|-+ ..+|++++.||.|+.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~--t~~l~t~c~~g~v~~ 352 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN--TDYLLTACANGKVRQ 352 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC--cchheeeccCceEEe
Confidence 0112333344433 77899999999999998877665554 6 78899999987 468889999999999
Q ss_pred EECcCCceeEEEEcCCCeeeee---EcCCCCEEEEEeCCCcEEEEECC
Q 017601 311 GQWRESSKVFAFRGDSNWLGFS---KCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~~~~~~---~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
||.+++.+++.+.||. ..+. ..++.++++++|.|++.+|+++.
T Consensus 353 wDaRtG~l~~~y~GH~--~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 353 WDARTGQLKFTYTGHQ--MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccccceEEEEecCc--hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999998 5444 36799999999999999999874
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-27 Score=194.81 Aligned_cols=242 Identities=17% Similarity=0.136 Sum_probs=186.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++.|+.++|.-|+ ....++.++.+|++|+...+. -...|.-.++ . +..++.+. +...+++|
T Consensus 13 l~~~qgaV~avryN~dG----nY~ltcGsdrtvrLWNp~rg~---liktYsghG~--E-----VlD~~~s~-Dnskf~s~ 77 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDG----NYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGH--E-----VLDAALSS-DNSKFASC 77 (307)
T ss_pred ecccccceEEEEEccCC----CEEEEcCCCceEEeecccccc---eeeeecCCCc--e-----eeeccccc-cccccccC
Confidence 45789999999999874 566677788899999987542 1122322111 1 33566666 45678888
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||+. +..+.++. |-..++.+. |+.+...+++++-|.++++||-|+. ..++++.+... ...|.
T Consensus 78 -GgDk~v~vwDV~TGkv~Rr~rg--H~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea-~D~V~ 149 (307)
T KOG0316|consen 78 -GGDKAVQVWDVNTGKVDRRFRG--HLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEA-KDGVS 149 (307)
T ss_pred -CCCceEEEEEcccCeeeeeccc--ccceeeEEE---ecCcceEEEeccccceeEEEEcccC-CCCccchhhhh-cCcee
Confidence 899999999985 55666554 444555555 3344567777889999999999975 33678877655 68899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++..+ + .|++||.||+++.||+|.|+....+.+| +|+++.||+ |++..+.++.|+++++.|-.+++++..+.|
T Consensus 150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred EEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 98875 4 8999999999999999999999888877 899999999 999999999999999999999999999999
Q ss_pred CCCeeeeeEcC---CCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSKCS---NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+-.--..|. ....+++||+||.|++||+....
T Consensus 224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 98421111132 45689999999999999998764
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.3e-26 Score=203.13 Aligned_cols=251 Identities=14% Similarity=0.145 Sum_probs=190.7
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.+....+|.+.|.+++|--.+. ....+++++.+-++++|..+.+...... .....+|.. ++-+++..+ ++.+
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~-~~~~~GHk~-----~V~sVsv~~-sgtr 207 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKA-LKVCRGHKR-----SVDSVSVDS-SGTR 207 (423)
T ss_pred eEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhH-HhHhccccc-----ceeEEEecC-CCCe
Confidence 3344679999999888754322 1236788888888998888766332221 122234433 355788888 5668
Q ss_pred EEEEecccceEEEEeCCc----ce--------------------EEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCe
Q 017601 164 AAVARSFSKSIDVYDQDI----HL--------------------RTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQ 218 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~----~~--------------------~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~ 218 (369)
++++ |+|.+++||+... .. .++.+ ..|...+..+.+. +...+.+++.|.+
T Consensus 208 ~~Sg-S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~----d~~v~yS~SwDHT 282 (423)
T KOG0313|consen 208 FCSG-SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS----DATVIYSVSWDHT 282 (423)
T ss_pred EEee-cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc----CCCceEeecccce
Confidence 8888 9999999998210 00 01111 2244555555542 3568899999999
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc---eeeeeccccccCceEEEEEcCC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW---SALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~---~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
|+.||+.++ +++.++... ..++|++++|.. +||+|+.|+.+++||.|++ -..++|.+| +..|.++.|+|.
T Consensus 283 Ik~WDletg---~~~~~~~~~--ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~ 356 (423)
T KOG0313|consen 283 IKVWDLETG---GLKSTLTTN--KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPT 356 (423)
T ss_pred EEEEEeecc---cceeeeecC--cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCC
Confidence 999999999 888888877 899999999988 9999999999999999984 245689999 999999999998
Q ss_pred CCCEEEEEECCCeEEEEECcCCc-eeEEEEcCCCeeeeeEc--CCCCEEEEEeCCCcEEEEECC
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS-KVFAFRGDSNWLGFSKC--SNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~-~~~~~~g~~~~~~~~~~--~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+..+|+|+|.|+++++||++... .++.+.+|. ..+... .++..|+||+.|++|+|+.-.
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~--DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN--DKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCC--ceEEEEeccCCceEEeccCcceEEEeccc
Confidence 88899999999999999999876 899999987 444432 278899999999999998643
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=3.1e-25 Score=199.12 Aligned_cols=244 Identities=21% Similarity=0.261 Sum_probs=186.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|.+++|+|++ ..+++++.+|.+++|++.... .......+. ..+..+.|+|++ ..++++
T Consensus 5 ~~~h~~~i~~~~~~~~~----~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~-----~~i~~~~~~~~~-~~l~~~ 69 (289)
T cd00200 5 LKGHTGGVTCVAFSPDG----KLLATGSGDGTIKVWDLETGE-----LLRTLKGHT-----GPVRDVAASADG-TYLASG 69 (289)
T ss_pred hcccCCCEEEEEEcCCC----CEEEEeecCcEEEEEEeeCCC-----cEEEEecCC-----cceeEEEECCCC-CEEEEE
Confidence 34899999999999973 688888889999999998542 111222222 224479999954 567777
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||... ....+. .+...+..+.+. +++..+++++.|+.+.+||++++ +.+..+..+ ...+.
T Consensus 70 -~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~-~~~i~ 139 (289)
T cd00200 70 -SSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFS---PDGRILSSSSRDKTIKVWDVETG---KCLTTLRGH-TDWVN 139 (289)
T ss_pred -cCCCeEEEEEcCcccceEEEe--ccCCcEEEEEEc---CCCCEEEEecCCCeEEEEECCCc---EEEEEeccC-CCcEE
Confidence 7899999999864 333332 233344444432 23344555555999999999977 667777654 57899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++|+|++ ++++++.|+.|++||+++++.+..+..| ...|.++.|+| +++.+++++.|+.|++||++.++.+..+.+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhh
Confidence 99999999 8888888999999999999999999999 88999999999 998999999999999999999888888877
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.. ...+...+++.++++++.||.|++||+.+++
T Consensus 218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 662 2334445578899999989999999998764
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=219.40 Aligned_cols=252 Identities=16% Similarity=0.170 Sum_probs=188.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC----------------------------C-CCccc-----
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG----------------------------K-DVDRL----- 135 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~----------------------------~-~~~~~----- 135 (369)
.|++.|+++.||+|+ ++||+++.||-|+||.+.... . .+.+.
T Consensus 265 ah~gaIw~mKFS~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 799999999999994 899999999999999987610 0 00000
Q ss_pred ------cccccCCCCCCCC----------CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeec
Q 017601 136 ------TYSVLPQDCGVGE----------GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQ 199 (369)
Q Consensus 136 ------~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~ 199 (369)
...+........+ +.+..|+|+. .++|+++ |.|+||+||+++. ...+..+.|+.-|++++
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSS-SMDKTVRLWh~~~-~~CL~~F~HndfVTcVa 416 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSS-SMDKTVRLWHPGR-KECLKVFSHNDFVTCVA 416 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEec-cccccEEeecCCC-cceeeEEecCCeeEEEE
Confidence 0000000000011 1244677776 4577887 9999999999872 33455666777677776
Q ss_pred cCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec
Q 017601 200 NLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 200 ~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
+.|. |+.+|++++-|+.||||++... +.+.-...+ .-|+++||.||| ..+.|+.+|.+++|+.+..+....+
T Consensus 417 FnPv--DDryFiSGSLD~KvRiWsI~d~---~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPV--DDRYFISGSLDGKVRLWSISDK---KVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eccc--CCCcEeecccccceEEeecCcC---eeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 6653 6789999999999999999876 555555555 899999999999 9999999999999999887766554
Q ss_pred cccc-------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCc
Q 017601 279 VHCS-------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGS 348 (369)
Q Consensus 279 ~~h~-------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~ 348 (369)
.-++ ...|+++.|.|.+...++..+.|..|||+|.+...++..|+|..+..+... ..||++|+++++|..
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 3210 127999999997888888899999999999999889999988764322111 349999999999999
Q ss_pred EEEEECCC
Q 017601 349 IFVADVVA 356 (369)
Q Consensus 349 I~iWd~~~ 356 (369)
|+||+...
T Consensus 570 VYiW~~~~ 577 (712)
T KOG0283|consen 570 VYIWKNDS 577 (712)
T ss_pred EEEEeCCC
Confidence 99999743
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3.6e-25 Score=228.77 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=196.4
Q ss_pred eCCeEEEEEEeCCchhh-hcCCCccccccCccc-------ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcE
Q 017601 49 SGCHLYKLQVMMDDWFV-SEGKDSLLIPEQTPV-------MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHL 120 (369)
Q Consensus 49 s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v 120 (369)
....|..+++...+.++ ..+.++...-++.+. .+.... ...+...|.+++|++.. ...+++++.+|.|
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~---~~~las~~~Dg~v 557 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVV-ELASRSKLSGICWNSYI---KSQVASSNFEGVV 557 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceE-EecccCceeeEEeccCC---CCEEEEEeCCCeE
Confidence 45557777777766665 445554433222211 110111 22345789999998752 3689999999999
Q ss_pred EEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeee
Q 017601 121 IVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFV 198 (369)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~ 198 (369)
++||+.+.. ....+..|. ..+.+++|+|.++.+++++ +.|++|++||... .+..+. ....+..+
T Consensus 558 ~lWd~~~~~-----~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sg-s~Dg~v~iWd~~~~~~~~~~~---~~~~v~~v 623 (793)
T PLN00181 558 QVWDVARSQ-----LVTEMKEHE-----KRVWSIDYSSADPTLLASG-SDDGSVKLWSINQGVSIGTIK---TKANICCV 623 (793)
T ss_pred EEEECCCCe-----EEEEecCCC-----CCEEEEEEcCCCCCEEEEE-cCCCEEEEEECCCCcEEEEEe---cCCCeEEE
Confidence 999987541 112223332 3466899998677788888 8999999999863 233332 22233333
Q ss_pred ccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC------c
Q 017601 199 QNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR------W 272 (369)
Q Consensus 199 ~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~------~ 272 (369)
.+.+ +++..|++++.|++|++||++... .++..+.+| ...|++++|.+...|++++.|++|++||++. +
T Consensus 624 ~~~~--~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 624 QFPS--ESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEeC--CCCCEEEEEeCCCeEEEEECCCCC--ccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 3211 346688889999999999998762 245566655 6899999997433999999999999999984 3
Q ss_pred eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-------------cCCC-eeeeeEcCCCC
Q 017601 273 SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-------------GDSN-WLGFSKCSNRD 338 (369)
Q Consensus 273 ~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-------------g~~~-~~~~~~~~d~~ 338 (369)
.++.++.+| ...+..+.|+| ++.+|++|+.|++|++|+......+..+. .+.. ...+...+++.
T Consensus 699 ~~l~~~~gh-~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 699 TPLHSFMGH-TNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred cceEEEcCC-CCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 678889999 99999999999 99999999999999999987654433321 1221 12233356899
Q ss_pred EEEEEeCCCcEEEEEC
Q 017601 339 VLGGWSDSGSIFVADV 354 (369)
Q Consensus 339 ~l~sgs~dg~I~iWd~ 354 (369)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999986
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=188.57 Aligned_cols=259 Identities=14% Similarity=0.144 Sum_probs=193.4
Q ss_pred EEEEeCCeEEEEEEeCCchhhhc-CCCccccccCcccccc-cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEE
Q 017601 45 VYIASGCHLYKLQVMMDDWFVSE-GKDSLLIPEQTPVMDS-SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIV 122 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~ 122 (369)
-+--...+|-++.+.+++..+.. +... .+-.+....++ .+...-+|+..|.++.|..+ +.-+++++.+|.++|
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----grWMyTgseDgt~kI 109 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----GRWMYTGSEDGTVKI 109 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeec----CeEEEecCCCceEEE
Confidence 34445666777788777777644 3332 22233333433 34456799999999999887 489999999999999
Q ss_pred EEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCC
Q 017601 123 SKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLS 202 (369)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~ 202 (369)
||+.... -...|... . .+..+..+| ++..+.++ -.++.|++||+......-... |..-.+++...
T Consensus 110 WdlR~~~---~qR~~~~~---s-----pVn~vvlhp-nQteLis~-dqsg~irvWDl~~~~c~~~li--Pe~~~~i~sl~ 174 (311)
T KOG0315|consen 110 WDLRSLS---CQRNYQHN---S-----PVNTVVLHP-NQTELISG-DQSGNIRVWDLGENSCTHELI--PEDDTSIQSLT 174 (311)
T ss_pred EeccCcc---cchhccCC---C-----CcceEEecC-CcceEEee-cCCCcEEEEEccCCccccccC--CCCCcceeeEE
Confidence 9997521 11123221 1 255899999 55667777 788999999987543332221 22223444334
Q ss_pred CCCCCCcEEEEEcCCeEEEEeCCcccC---CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-eeeee
Q 017601 203 PVNGGPNMLAVTEGCQLTIWDLRMKEN---GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-SALSR 277 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iwD~~~~~~---~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~ 277 (369)
..+|+..++++..-|.+.+|++-.... ..++..++.| ...+..+.|||++ +||++|.|++++||+..+. +....
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~ 253 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV 253 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE
Confidence 457788888888899999999875432 2345556655 6889999999999 9999999999999999987 66678
Q ss_pred ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 278 WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 278 ~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
+++| +..+..++||. |+.||+++|.|+++++||+..++.++.+.||.
T Consensus 254 l~gh-~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 254 LTGH-QRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eecC-CceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcc
Confidence 8999 99999999999 99999999999999999999999999999987
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-26 Score=214.54 Aligned_cols=203 Identities=14% Similarity=0.236 Sum_probs=174.0
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+-++.|+|..+-++++ -+.|.|+||+.++ .++.+....-| ....|+. ..+.++++++|.+|++|+..+.
T Consensus 16 VKsVd~HPtePw~la~--LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia------RknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAA--LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA------RKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred eeeeecCCCCceEEEe--eecCeeEEEecccceeeeeeeecccchhhheeee------ccceEEEecCCceEEEEecccc
Confidence 4479999988755553 6999999998763 45666544433 3455665 2569999999999999999999
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
..++.|..| .+.|.|++.+|.. ++.++|+|-+||+||-.+ +.+.+++.|| ...|.+++|+|.|.+.+||+|.|
T Consensus 88 ---ekV~~FeAH-~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 88 ---EKVKTFEAH-SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ---eeeEEeecc-ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeecc
Confidence 778888866 6999999999999 999999999999999987 7888999999 99999999999999999999999
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeE---cC--CCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSK---CS--NRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~--d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
++|++|.+..+.+.+++.||. .++.. .+ |..+|+||++|.+|+|||..++. .+++|+||+|
T Consensus 163 rTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~ 228 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTN 228 (794)
T ss_pred ccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccc
Confidence 999999999999999999999 55544 22 67799999999999999998875 5899999986
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.2e-24 Score=195.22 Aligned_cols=239 Identities=21% Similarity=0.259 Sum_probs=183.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...+..+.|++++ ..+++++.+|.+++|++..... ...+..+. ..+.+++|+|. ..+++++
T Consensus 47 ~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~~~~~~~~-----~~~~~~~~-----~~i~~~~~~~~-~~~~~~~ 111 (289)
T cd00200 47 LKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDLETGEC-----VRTLTGHT-----SYVSSVAFSPD-GRILSSS 111 (289)
T ss_pred EecCCcceeEEEECCCC----CEEEEEcCCCeEEEEEcCcccc-----eEEEeccC-----CcEEEEEEcCC-CCEEEEe
Confidence 45788899999999973 5788888899999999985411 11122221 23568999995 4566666
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.|.+||... ....+. .+...+..+.+. +++..+++++.|+.|++||++++ +.+..+..+ ...+.
T Consensus 112 -~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~---~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~-~~~i~ 181 (289)
T cd00200 112 -SRDKTIKVWDVETGKCLTTLR--GHTDWVNSVAFS---PDGTFVASSSQDGTIKLWDLRTG---KCVATLTGH-TGEVN 181 (289)
T ss_pred -cCCCeEEEEECCCcEEEEEec--cCCCcEEEEEEc---CcCCEEEEEcCCCcEEEEEcccc---ccceeEecC-ccccc
Confidence 6799999999863 222222 233344444432 33334444445999999999977 666677665 56899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++|+|++ .+++++.|+.|++||+++++.+..+..| ...+.++.|+| ++.++++++.|+.|++||+.+++....+.+
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 99999999 9999999999999999999999999888 88999999999 888888888899999999999888888887
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
|.. ...+...+++.+|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 762 23344456889999999999999996
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.9e-25 Score=192.03 Aligned_cols=277 Identities=13% Similarity=0.157 Sum_probs=201.6
Q ss_pred EEEeCCeEEEEEEeCCchhh-hcCCCc-cccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEE
Q 017601 46 YIASGCHLYKLQVMMDDWFV-SEGKDS-LLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS 123 (369)
Q Consensus 46 ~~as~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~ 123 (369)
.......||.+++.+.++.+ ..|.+- ++.|..-+..+ ..-.+.+|.+.|..+.|++|+ ..+.|++.|.+++.|
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~----s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDG----SHILSCGTDKTVRGW 117 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCC----CEEEEecCCceEEEE
Confidence 33444556666877776666 445543 33443222222 112245999999999999985 688888888999999
Q ss_pred EecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccC
Q 017601 124 KLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNL 201 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~ 201 (369)
|..++. ..+..+.|..- +..++-+..+..++.++ +.|++++|||..+ .++++.......++.|-+
T Consensus 118 D~~tG~-----~~rk~k~h~~~-----vNs~~p~rrg~~lv~Sg-sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-- 184 (338)
T KOG0265|consen 118 DAETGK-----RIRKHKGHTSF-----VNSLDPSRRGPQLVCSG-SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-- 184 (338)
T ss_pred ecccce-----eeehhccccce-----eeecCccccCCeEEEec-CCCceEEEEeecccchhhccccceeEEEEEecc--
Confidence 999772 22333333321 22344334455666666 9999999999862 233321111223344443
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeee
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALS 276 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~ 276 (369)
++..+++++-|+.|++||+|.+ ...+.+.+| .++|+.+..+|+| .+.+-+.|.++++||+|-. .++.
T Consensus 185 ----~s~qv~sggIdn~ikvWd~r~~---d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 185 ----TSDQVISGGIDNDIKVWDLRKN---DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred ----cccceeeccccCceeeeccccC---cceEEeecc-cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence 4678999999999999999988 788999988 8999999999999 9999999999999999863 3466
Q ss_pred eccccc-cC--ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEE
Q 017601 277 RWVHCS-KY--EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 277 ~~~~h~-~~--~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~ 350 (369)
.+.+|. .. ....++||| +++.+.+++.|+.+++||....+.++.+.||. ..+.. -|...+|.+++.|.+|+
T Consensus 257 if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred EeecchhhhhhhcceeeccC-CCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEeccCceeE
Confidence 666651 22 356789999 99999999999999999999989999999998 44433 45889999999999998
Q ss_pred E
Q 017601 351 V 351 (369)
Q Consensus 351 i 351 (369)
+
T Consensus 334 l 334 (338)
T KOG0265|consen 334 L 334 (338)
T ss_pred e
Confidence 7
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.3e-25 Score=185.67 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=162.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|+.++|+|.. +.++|+++.+..|++|+.... . .+...........-.+.++||+|.+ .++|++
T Consensus 10 ~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~-~-----s~~ck~vld~~hkrsVRsvAwsp~g-~~La~a 79 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSG-D-----SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASA 79 (312)
T ss_pred ecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCC-C-----cEEEEEeccccchheeeeeeecCCC-cEEEEe
Confidence 57899999999999962 469999999999999998842 1 1222111111112235689999954 588888
Q ss_pred ecccceEEEEeCC----cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQD----IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|+|.++.||... ..+..+ ..|...+..+.+ +++|++|++++.|..|-||.+...+.-.++..++.| ...
T Consensus 80 -SFD~t~~Iw~k~~~efecv~~l--EGHEnEVK~Vaw---s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD 152 (312)
T KOG0645|consen 80 -SFDATVVIWKKEDGEFECVATL--EGHENEVKCVAW---SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD 152 (312)
T ss_pred -eccceEEEeecCCCceeEEeee--eccccceeEEEE---cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence 999999999654 233332 224455555553 346788889999999999999866556778888877 788
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCC---CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPR---RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~---~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
|--+.|+|.. +|+++|.|++|++|+-. .+++..++.+| ...|.+++|+| .|..|++++.|++++||-..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~-~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH-ENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc-cceEEEEEecC-CCceEEEecCCcceEeeeec
Confidence 9999999998 99999999999999755 47899999999 88999999999 99999999999999999843
No 45
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=198.07 Aligned_cols=253 Identities=15% Similarity=0.156 Sum_probs=188.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc-----ccC--CCCCCCCCCeeEEEECCC
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS-----VLP--QDCGVGEGSWSGLCFSPS 159 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~l~~~p~ 159 (369)
...+|.+.|+.++-++-+ +..+.|+.+..|+|.||++.....-+....+. ..| ...++..+|+ +|+|||.
T Consensus 146 ~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy-~LdWSp~ 222 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGY-GLDWSPI 222 (440)
T ss_pred cccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccce-eeecccc
Confidence 367999999999988863 35788999999999999997653221111111 011 0123334567 7999997
Q ss_pred CceeEEEEecccceEEEEeCCcceE---EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHLR---TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
..+.++++ -.-+.|++|....... ......|..++.-++++|. ..+.|++||-|++|+|||+|.+.+..++.+-
T Consensus 223 ~~g~LlsG-Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt--E~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 223 KTGRLLSG-DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT--EDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cccccccC-ccccceEeeeeccCceeecCccccccccchhhhccCCc--cCceEEeeecCceEEEEEecCCCccceeEee
Confidence 77778877 6678899997643211 1122236667777887763 4578888999999999999998665666664
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
.+ ...|+.|+|+-.- +||+|+.||+++|||+|+ ++++.+|+-| +.+|++|.|+|++...|+++|.|..|.+||
T Consensus 300 Ah--~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 300 AH--NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred cc--CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEE
Confidence 44 4899999999888 999999999999999997 6788999999 999999999999899999999999999999
Q ss_pred CcC-------------------CceeEEEEcCCCeeeeeEcC-CCCEEEEEeCCCc
Q 017601 313 WRE-------------------SSKVFAFRGDSNWLGFSKCS-NRDVLGGWSDSGS 348 (369)
Q Consensus 313 ~~~-------------------~~~~~~~~g~~~~~~~~~~~-d~~~l~sgs~dg~ 348 (369)
+.- ..++|.+.|..-...+..++ ...+|++.+.||.
T Consensus 377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 853 13667776654323333344 4678889888884
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-25 Score=216.01 Aligned_cols=240 Identities=18% Similarity=0.159 Sum_probs=183.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
...|..|+|+|. .-.+.+.=-.|.|.+||+..+ .....+..|+ |.+.|++|+|+++ +++++ +.|
T Consensus 9 SsRvKglsFHP~----rPwILtslHsG~IQlWDYRM~-----tli~rFdeHd-----GpVRgv~FH~~qp-lFVSG-GDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK----RPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHD-----GPVRGVDFHPTQP-LFVSG-GDD 72 (1202)
T ss_pred cccccceecCCC----CCEEEEeecCceeeeehhhhh-----hHHhhhhccC-----CccceeeecCCCC-eEEec-CCc
Confidence 367889999997 345555566799999999854 1122234444 4456999999665 67777 999
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
..|++|+.....-.+....|-.-+..+.+ -+.-..++++|+|.||+||+..++ +++..+.+| ...|.|..|+|
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~F---HheyPWIlSASDDQTIrIWNwqsr---~~iavltGH-nHYVMcAqFhp 145 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFF---HHEYPWILSASDDQTIRIWNWQSR---KCIAVLTGH-NHYVMCAQFHP 145 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeec---cCCCceEEEccCCCeEEEEeccCC---ceEEEEecC-ceEEEeeccCC
Confidence 99999988654433333434333333322 234569999999999999999999 999999988 78999999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCC--------c---------------------eeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 252 TG-NIAVAGADRTVTIYDPRR--------W---------------------SALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~--------~---------------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
.. ++++||-|.||+|||+.- + -..+.+.|| ...|+-++|+| .-.+++|
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH-DRGVNwaAfhp-TlpliVS 223 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH-DRGVNWAAFHP-TLPLIVS 223 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc-ccccceEEecC-CcceEEe
Confidence 88 999999999999999751 1 012346789 89999999999 8889999
Q ss_pred EECCCeEEEEECcCCc--eeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESS--KVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~--~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|+.|+.|++|-+...+ .+.+.+||. .++.. -+..++|+|.|+|++|+|||+....
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhccc--CCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 9999999999997643 355668887 34433 3467899999999999999997554
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=206.87 Aligned_cols=238 Identities=17% Similarity=0.189 Sum_probs=182.1
Q ss_pred ceeeEEEEeecCCCCceEEE-EEecCCcEEEEEecCCCCCCccccccc--cCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 93 SEVQSIALAETDSSGYMVLG-SVDSYGHLIVSKLDTSGKDVDRLTYSV--LPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~la-s~d~~g~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
..|..++|+..+ .-|| .+.+.|.+.||+.+.. .|.+ ++|.. .+++++++| +++++|++ +
T Consensus 308 ~~I~t~~~N~tG----DWiA~g~~klgQLlVweWqsE-------sYVlKQQgH~~-----~i~~l~YSp-Dgq~iaTG-~ 369 (893)
T KOG0291|consen 308 QKILTVSFNSTG----DWIAFGCSKLGQLLVWEWQSE-------SYVLKQQGHSD-----RITSLAYSP-DGQLIATG-A 369 (893)
T ss_pred ceeeEEEecccC----CEEEEcCCccceEEEEEeecc-------ceeeecccccc-----ceeeEEECC-CCcEEEec-c
Confidence 567788887653 3444 3456789999998854 2332 22322 245899999 55688888 9
Q ss_pred ccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.|+.|+|||... +.-++ ..|...++-+++. ..+..+++.+-||+|+.||+... ...+++..+..-...|+
T Consensus 370 eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~---~~g~~llssSLDGtVRAwDlkRY---rNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFT---ARGNVLLSSSLDGTVRAWDLKRY---RNFRTFTSPEPIQFSCV 441 (893)
T ss_pred CCCcEEEEeccCceEEEEe--ccCCCceEEEEEE---ecCCEEEEeecCCeEEeeeeccc---ceeeeecCCCceeeeEE
Confidence 999999999865 44333 2344444444432 24678999999999999999987 78888887634567888
Q ss_pred EECCCC-cEEEEeCCC-cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEc
Q 017601 248 CSSSTG-NIAVAGADR-TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRG 324 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~-~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g 324 (369)
+..|.| .+..|+.|. -|.||++++|+.+..+.|| +++|.+++|+| +++.|+|+|.|++||+||+-.. ....++..
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i 519 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEI 519 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEee
Confidence 899999 667777666 5899999999999999999 99999999999 9999999999999999999653 34444544
Q ss_pred CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+...++...|||+.||.++-||.|.+||.+.+.
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 3333677778899999999999999999998764
No 48
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=194.04 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=199.1
Q ss_pred cccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc
Q 017601 82 DSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW 161 (369)
Q Consensus 82 ~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 161 (369)
+-+.+.+..|+++|.+++++|+ ..++++++.+-.-++|+..++. ..+.+..|.. .++++.|+. ++
T Consensus 54 DdS~~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKD-----SVt~~~Fsh-dg 118 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGE-----FAGELTGHKD-----SVTCCSFSH-DG 118 (399)
T ss_pred ccceeehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCc-----ceeEecCCCC-----ceEEEEEcc-Cc
Confidence 3455667899999999999996 5799999999999999998762 2344555543 366899998 66
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
.++|++ ..++.|+||+...........+....+.++.|+|. ...|++++.||.+-+|.+..+ ...+.+.+| +
T Consensus 119 tlLATG-dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~---a~illAG~~DGsvWmw~ip~~---~~~kv~~Gh-~ 190 (399)
T KOG0296|consen 119 TLLATG-DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPR---AHILLAGSTDGSVWMWQIPSQ---ALCKVMSGH-N 190 (399)
T ss_pred eEEEec-CCCccEEEEEcccCceEEEeecccCceEEEEeccc---ccEEEeecCCCcEEEEECCCc---ceeeEecCC-C
Confidence 788988 99999999997643333333445678889998884 458889999999999999876 677888887 8
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc--------------------------------------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS-------------------------------------- 282 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~-------------------------------------- 282 (369)
.++++=.|.|+| ++++|..||+|++||+.+++++.++.+..
T Consensus 191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 999999999999 99999999999999999988877654110
Q ss_pred ------------cCceEEEEEcCC--CCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCC
Q 017601 283 ------------KYEITGLSFSSI--DSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDS 346 (369)
Q Consensus 283 ------------~~~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~d 346 (369)
...+.+|.|.|. .=.+.|.|+.||+|.|||+....+.+.+.... ++.++. ...+|++++.+
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~t~~l~t~c~~ 347 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLNTDYLLTACAN 347 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcCcchheeeccC
Confidence 111223333331 33467889999999999999877777665333 444433 25889999999
Q ss_pred CcEEEEECCCCcchhhhcccCC
Q 017601 347 GSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 347 g~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|.|+.||.++|+. ...+.||.
T Consensus 348 g~v~~wDaRtG~l-~~~y~GH~ 368 (399)
T KOG0296|consen 348 GKVRQWDARTGQL-KFTYTGHQ 368 (399)
T ss_pred ceEEeeeccccce-EEEEecCc
Confidence 9999999999974 56677774
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.5e-26 Score=191.28 Aligned_cols=242 Identities=12% Similarity=0.165 Sum_probs=189.2
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+..+|++.|++..+..+ ..+-|++..+=+-.+||.-++.. + +++. |.. -+..++|+. +...+++
T Consensus 54 tfeghkgavw~~~l~~n----a~~aasaaadftakvw~a~tgde-l--hsf~---hkh-----ivk~~af~~-ds~~llt 117 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKN----ATRAASAAADFTAKVWDAVTGDE-L--HSFE---HKH-----IVKAVAFSQ-DSNYLLT 117 (334)
T ss_pred eeeccCcceeeeecCch----hhhhhhhcccchhhhhhhhhhhh-h--hhhh---hhh-----eeeeEEecc-cchhhhc
Confidence 35699999999999775 35566666666677788766522 1 1222 111 144799998 5567777
Q ss_pred EecccceEEEEeCCcceEEEEe-eeCCcc---eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRT-LWYPSS---LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~-~~~~~~---v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+ +.++.++|||..+....... ..++.. +.|+. .+..+|+.++|++||+||.+++ ..++++... .
T Consensus 118 g-g~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~------eD~~iLSSadd~tVRLWD~rTg---t~v~sL~~~--s 185 (334)
T KOG0278|consen 118 G-GQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH------EDKCILSSADDKTVRLWDHRTG---TEVQSLEFN--S 185 (334)
T ss_pred c-chHHHhhhhhccCCCCCchhhcCCCCcceeEEEec------cCceEEeeccCCceEEEEeccC---cEEEEEecC--C
Confidence 7 89999999998654333222 224433 44444 3678999999999999999999 889998877 8
Q ss_pred cEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 243 ~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+|+++.++++|.+++-..-++|+.||..+..++..++-. ..|.+.+++| +...++.|+.|..++.||..+++.+-.|
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P--~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP--CNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeeccCc--cccccccccC-CCceEEecCcceEEEEEeccCCceeeec
Confidence 999999999997777778889999999999888887743 6799999999 8899999999999999999999988887
Q ss_pred -EcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 -RGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 -~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+||. ...++..+|||..-++||+||+|++|.+..++.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 7765 345666689999999999999999999876653
No 50
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.6e-24 Score=208.15 Aligned_cols=201 Identities=14% Similarity=0.089 Sum_probs=150.5
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcce------EEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL------RTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~------~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
+.+.+++|+|.++.+++++ +.|++|++||+.... ..+..+ .|...+..+.+.|. .++.|++++.|++|+|
T Consensus 76 ~~V~~v~fsP~d~~~LaSg-S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~--~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS--AMNVLASAGADMVVNV 152 (493)
T ss_pred CCEEEEEEcCCCCCEEEEE-eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC--CCCEEEEEeCCCEEEE
Confidence 4577999999666788888 999999999975321 112222 24455666665442 1257888999999999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc-eEEEEEcCCCCCEE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE-ITGLSFSSIDSNYI 299 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~-v~~l~~sp~d~~~l 299 (369)
||++++ +.+..+..+ ...|++++|+|+| +|++|+.|++|++||+++++.+.++.+| ... +..+.|.+ ++..+
T Consensus 153 WDl~tg---~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H-~~~~~~~~~w~~-~~~~i 226 (493)
T PTZ00421 153 WDVERG---KAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH-ASAKSQRCLWAK-RKDLI 226 (493)
T ss_pred EECCCC---eEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC-CCCcceEEEEcC-CCCeE
Confidence 999988 677777765 5889999999999 9999999999999999999999999999 554 55788999 77777
Q ss_pred EEEE----CCCeEEEEECcCCc-eeEEEEcCC-Ceee-eeEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 017601 300 YVQG----VDYEVFCGQWRESS-KVFAFRGDS-NWLG-FSKCSNRDVLGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 300 ~s~s----~D~~i~vwd~~~~~-~~~~~~g~~-~~~~-~~~~~d~~~l~sgs-~dg~I~iWd~~~~~ 358 (369)
++++ .|++|++||+++.. .+..+..+. .... ....+++.+|++++ .|+.|++||+.+++
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 7654 47999999998743 444443332 1111 12245888888877 59999999998775
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=3e-24 Score=196.79 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=194.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|...++-..|||.+ ..+||+|..|+|++||.... ..+ .+..+++-. +.+..++|++++..++|++
T Consensus 55 YtEH~~~vtVAkySPsG----~yiASGD~sG~vRIWdtt~~-~hi--LKnef~v~a-----G~I~Di~Wd~ds~RI~avG 122 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSG----FYIASGDVSGKVRIWDTTQK-EHI--LKNEFQVLA-----GPIKDISWDFDSKRIAAVG 122 (603)
T ss_pred eccccceeEEEEeCCCc----eEEeecCCcCcEEEEeccCc-cee--eeeeeeecc-----cccccceeCCCCcEEEEEe
Confidence 56899999999999973 69999999999999998854 111 122232222 3355799999777667776
Q ss_pred eccc--ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFS--KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d--~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
-+.+ +.+-+||.+..+-.+.. |...++.+..-|--| =+++++++|++|.+|+-.-- +-..++..| ...|+
T Consensus 123 EGrerfg~~F~~DSG~SvGei~G--hSr~ins~~~KpsRP--fRi~T~sdDn~v~ffeGPPF---KFk~s~r~H-skFV~ 194 (603)
T KOG0318|consen 123 EGRERFGHVFLWDSGNSVGEITG--HSRRINSVDFKPSRP--FRIATGSDDNTVAFFEGPPF---KFKSSFREH-SKFVN 194 (603)
T ss_pred cCccceeEEEEecCCCccceeec--cceeEeeeeccCCCc--eEEEeccCCCeEEEeeCCCe---eeeeccccc-cccee
Confidence 3333 45777888765554432 333344443322212 37899999999999975422 333334444 57899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
|+.|+||| ++|+++.||+|.+||=.+++.+..+. +| ++.|.+|+|+| |++.++++|.|.+++|||+.+.+++.+
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH-kGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc-cccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEE
Confidence 99999999 99999999999999999999999988 89 99999999999 999999999999999999999999999
Q ss_pred EEcCCCee--eeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 322 FRGDSNWL--GFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 322 ~~g~~~~~--~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+.-..... .+-..-.++.|++.|-+|+|.+++..... .+..+.||.
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHn 320 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHN 320 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccc
Confidence 85433111 11112267899999999999999998887 677788875
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=4.2e-25 Score=195.18 Aligned_cols=259 Identities=15% Similarity=0.126 Sum_probs=193.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--Cc
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QW 161 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~ 161 (369)
..++-..|.+.|.+|...+ ..+.+++-+|.+++|+.... ..+.+.+|...+. .++|.-. ..
T Consensus 97 ~pl~~~~hdDWVSsv~~~~------~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik-----~v~~v~~n~~~ 159 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGAS------KWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIK-----SVAWVIKNSSS 159 (423)
T ss_pred CccccccchhhhhhhcccC------ceEEEeecCCeeEEEecCCc------eEEEEecCCccee-----eeEEEecCCcc
Confidence 4444557999999998874 47888889999999998743 1233334443332 3444321 23
Q ss_pred eeEEEEecccceEEEEeCCcce---EEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc-----------
Q 017601 162 SMAAVARSFSKSIDVYDQDIHL---RTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM----------- 226 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~---~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~----------- 226 (369)
..++++ |.|.++++|..+... ...+ ...|...+..+.. .+++.++++++.|.+|+||+..+
T Consensus 160 ~~fvsa-s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv---~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 160 CLFVSA-SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV---DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ceEEEe-cCCceEEEEEecCchhhhhHHhHhcccccceeEEEe---cCCCCeEEeecccceeeecccCCCccccccccch
Confidence 467887 999999999754211 1111 1134445555442 35688999999999999999321
Q ss_pred -----------ccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 227 -----------KENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 227 -----------~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
.....++-.+.+| ..+|.++-|++.+.+.++|.|.+|+.||+.++....++.+. ...++++.+| .
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~-~ 311 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSP-L 311 (423)
T ss_pred hhhhhhhhhhcccccCceEEeccc-ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC--cceeEeeccc-c
Confidence 0011345567777 89999999999669999999999999999999999988865 6899999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCC---ceeEEEEcCCCeeeeeE-cC-CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 296 SNYIYVQGVDYEVFCGQWRES---SKVFAFRGDSNWLGFSK-CS-NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~---~~~~~~~g~~~~~~~~~-~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
..+|++||.|..+++||.+++ -..+.|.||.+|..-.. +| +..+|+|||.|+++++||+++.+..+..+.||
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 999999999999999999984 35688899998865443 66 66779999999999999999998777777776
No 53
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.4e-26 Score=200.31 Aligned_cols=244 Identities=15% Similarity=0.168 Sum_probs=179.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
++.+|++.|++++-.|.. ...+||++.||.|.+||+.+.. ....+.+|. |-+.|+++.. ..+.+
T Consensus 61 ~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~-----G~V~Gi~v~~---~~~~t 124 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHE-----GLVRGICVTQ---TSFFT 124 (433)
T ss_pred hccccccccchhhcCcch---hhhhhccccCceEEEEehhhhh-----hhheeeccc-----CceeeEEecc---cceEE
Confidence 357999999999999862 4788999999999999998642 123344443 3355788866 34555
Q ss_pred EecccceEEEEeCC-cceEEEE-------------------------------------eeeCCcceeeeccCCCCCCCC
Q 017601 167 ARSFSKSIDVYDQD-IHLRTLR-------------------------------------TLWYPSSLNFVQNLSPVNGGP 208 (369)
Q Consensus 167 ~~s~d~~i~lwd~~-~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~~~ 208 (369)
+ +.|++|+.|..+ ...+++. ..+....+..+ .++|-..
T Consensus 125 v-gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~sv---kfNpvET 200 (433)
T KOG0268|consen 125 V-GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSV---KFNPVET 200 (433)
T ss_pred e-cCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEE---ecCCCcc
Confidence 5 688888888631 1111110 00011112222 2344344
Q ss_pred cEE-EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCc
Q 017601 209 NML-AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYE 285 (369)
Q Consensus 209 ~ll-a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~ 285 (369)
.+| ++++|+.|.|||+|++ .+++.+... ..-+.|||+|++ .+.+|++|..+..||+|. ..++....+| .+.
T Consensus 201 sILas~~sDrsIvLyD~R~~---~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsA 274 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA---SPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSA 274 (433)
T ss_pred hheeeeccCCceEEEecccC---Cccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhccc-cee
Confidence 444 4669999999999999 788776654 777899999988 999999999999999998 6778899999 999
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|.+|+||| .|+-++|||.|.+||||..+.+.....+. -..+..++..+.|.++|+|||+|+.|++|.....
T Consensus 275 V~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 275 VMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 99999999 99999999999999999998765444441 1111145555779999999999999999987654
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=9.7e-25 Score=211.67 Aligned_cols=238 Identities=18% Similarity=0.182 Sum_probs=190.4
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+.+|.+.|++++|..- ...+.+++.|.++++||..++ .....+..|... +.++.. .+..+++
T Consensus 244 ~l~GH~g~V~~l~~~~~----~~~lvsgS~D~t~rvWd~~sg-----~C~~~l~gh~st-----v~~~~~---~~~~~~s 306 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSG----GDKLVSGSTDKTERVWDCSTG-----ECTHSLQGHTSS-----VRCLTI---DPFLLVS 306 (537)
T ss_pred eccCCCCCceeEEEecC----CCEEEEEecCCcEEeEecCCC-----cEEEEecCCCce-----EEEEEc---cCceEee
Confidence 37899999999999752 258888889999999998765 223333333321 223333 3345666
Q ss_pred EecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ |.|.+|++|++.. .++.+.. |...|..+.. ++..+++++.|++|++||.+++ ++++.+.+| ...|
T Consensus 307 g-s~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~~~---~cl~sl~gH-~~~V 374 (537)
T KOG0274|consen 307 G-SRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQL-----DEPLLVSGSYDGTVKVWDPRTG---KCLKSLSGH-TGRV 374 (537)
T ss_pred c-cCCceEEEEeccCcceEEEecc--ccccEEEEEe-----cCCEEEEEecCceEEEEEhhhc---eeeeeecCC-cceE
Confidence 5 9999999999863 3333332 5666666663 3579999999999999999988 999999987 8999
Q ss_pred EEEEECCCCcEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+++.+.+...+++|+.|++|++||+++. +++.++.+| ..-|..+.+.. ++|++++.|++|++||..++++++.+.
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC-ccccccccccc---ceeEeccccccEEEeecccCceeeeec
Confidence 9998877679999999999999999999 999999999 88888777754 899999999999999999999999998
Q ss_pred c-CCCeeeeeEcCC-CCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 G-DSNWLGFSKCSN-RDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g-~~~~~~~~~~~d-~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+ |. .++....- ...+++++.||++++||++++..
T Consensus 451 ~~~~--~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 451 GRHV--GGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cCCc--ccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 8 54 44555443 48899999999999999999864
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=191.08 Aligned_cols=275 Identities=14% Similarity=0.114 Sum_probs=205.5
Q ss_pred EEEEEEeCCchhhhcCC-CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 53 LYKLQVMMDDWFVSEGK-DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
|-.++|++..+++..|. +....-++..+.. .++.+.+|...|..+++|+. .-.+.++..++.|..||+....
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~r----HpYlFs~gedk~VKCwDLe~nk-- 226 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKR----HPYLFSAGEDKQVKCWDLEYNK-- 226 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeeccc----CceEEEecCCCeeEEEechhhh--
Confidence 34567777777776655 4443333445553 66778899999999999987 4688888899999999998541
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEE
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNML 211 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll 211 (369)
+ .....+|.. ++.+++.+|.. ..++++ +.|.++++||+...........|...++.+.+-+. +.+++
T Consensus 227 v---IR~YhGHlS-----~V~~L~lhPTl-dvl~t~-grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~---dpqvi 293 (460)
T KOG0285|consen 227 V---IRHYHGHLS-----GVYCLDLHPTL-DVLVTG-GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT---DPQVI 293 (460)
T ss_pred h---HHHhccccc-----eeEEEeccccc-eeEEec-CCcceEEEeeecccceEEEecCCCCcceeEEeecC---CCceE
Confidence 1 112222322 46689999954 467777 89999999998754443333345556666655444 45999
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEE
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~ 290 (369)
++|.|++|++||++.+ +...++.+| ...|.+++.+|.. .+|+++.|. |+-|++..++.++.+.+| ...|++++
T Consensus 294 t~S~D~tvrlWDl~ag---kt~~tlt~h-kksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh-~~iintl~ 367 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAG---KTMITLTHH-KKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH-NAIINTLS 367 (460)
T ss_pred EecCCceEEEeeeccC---ceeEeeecc-cceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc-cceeeeee
Confidence 9999999999999998 777777776 6899999999999 999999886 889999999999999999 99999999
Q ss_pred EcCCCCCEEEEEECCCeEEEEECcCCceeEEEE---cCCCe---eeeeE-cC--CCCEEEEEeCCCcEEEEECC
Q 017601 291 FSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR---GDSNW---LGFSK-CS--NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 291 ~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~---g~~~~---~~~~~-~~--d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+. | .++++|+..+.+.+||++++-..+.+. +.... .++.. |. .|..|++|..|.+|++|.-.
T Consensus 368 ~ns-D-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 368 VNS-D-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecc-C-ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 987 5 477899999999999999875444331 11100 12333 22 68899999999999999643
No 56
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.8e-24 Score=208.26 Aligned_cols=223 Identities=13% Similarity=0.061 Sum_probs=161.3
Q ss_pred EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc---eE----EE
Q 017601 114 VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LR----TL 186 (369)
Q Consensus 114 ~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~----~~ 186 (369)
++..|.+.+|+.... .....+..|. ..+.+++|+|.++.++|++ +.|++|+|||+... .. .+
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~-----~~V~~lafsP~~~~lLASg-S~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHT-----SSILDLQFNPCFSEILASG-SEDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCC-----CCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCCccccccccce
Confidence 445667888887643 1122333333 3466899999767788888 89999999997531 11 11
Q ss_pred E-eeeCCcceeeeccCCCCCCCCcE-EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCc
Q 017601 187 R-TLWYPSSLNFVQNLSPVNGGPNM-LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRT 263 (369)
Q Consensus 187 ~-~~~~~~~v~~~~~~~~~~~~~~l-la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~ 263 (369)
. ...|...+..+.++| ++..+ ++++.|++|+|||++++ +.+..+.++ ..|++++|+|+| +|++++.|++
T Consensus 119 ~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg---~~~~~i~~~--~~V~SlswspdG~lLat~s~D~~ 190 (568)
T PTZ00420 119 CILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENE---KRAFQINMP--KKLSSLKWNIKGNLLSGTCVGKH 190 (568)
T ss_pred EEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCC---cEEEEEecC--CcEEEEEECCCCCEEEEEecCCE
Confidence 1 122445566666544 34454 57889999999999988 666666655 789999999999 9999999999
Q ss_pred EEEEeCCCceeeeeccccccCceEE-----EEEcCCCCCEEEEEECCC----eEEEEECcC-CceeEEEEcCCCeee---
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITG-----LSFSSIDSNYIYVQGVDY----EVFCGQWRE-SSKVFAFRGDSNWLG--- 330 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~-----l~~sp~d~~~l~s~s~D~----~i~vwd~~~-~~~~~~~~g~~~~~~--- 330 (369)
|+|||+++++.+.++.+| .+.+.. ..|++ ++.+|+++|.|+ +|+|||++. ++++..+..+.....
T Consensus 191 IrIwD~Rsg~~i~tl~gH-~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 191 MHIIDPRKQEIASSFHIH-DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred EEEEECCCCcEEEEEecc-cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 999999999999999999 765433 34568 889999988774 799999995 566666544331111
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+...+++.++++|+.|++|++|++..+
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 222336889999999999999999765
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-25 Score=197.96 Aligned_cols=287 Identities=16% Similarity=0.130 Sum_probs=205.4
Q ss_pred EEEEeCCeEEEEEEeCCchhhhc-CCCcc-ccccCcccccccc-cccCCccceeeEEEEeecCCCCceEEEEEecCCcEE
Q 017601 45 VYIASGCHLYKLQVMMDDWFVSE-GKDSL-LIPEQTPVMDSSM-LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLI 121 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~ 121 (369)
++.+.-+.|+-+.++..+.+++. .++.. .++.-....+.+. .++.+|...|--|.||||. ..|.++..+-.++
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd----ryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD----RYLLACGFDEVLS 294 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC----CeEEecCchHhee
Confidence 34455566666777777777744 44543 3333223333332 3367999999999999984 4555555555699
Q ss_pred EEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeecc
Q 017601 122 VSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQN 200 (369)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~ 200 (369)
+||++++.. .+.|. +.. +-...+++|.|+ ...+++| +.|++|..||.+..+ ...+.... ..+..+.
T Consensus 295 lwDv~tgd~---~~~y~---~~~---~~S~~sc~W~pD-g~~~V~G-s~dr~i~~wdlDgn~~~~W~gvr~-~~v~dla- 361 (519)
T KOG0293|consen 295 LWDVDTGDL---RHLYP---SGL---GFSVSSCAWCPD-GFRFVTG-SPDRTIIMWDLDGNILGNWEGVRD-PKVHDLA- 361 (519)
T ss_pred eccCCcchh---hhhcc---cCc---CCCcceeEEccC-CceeEec-CCCCcEEEecCCcchhhccccccc-ceeEEEE-
Confidence 999997732 22222 111 122458999995 4567777 899999999986432 22221111 1222222
Q ss_pred CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 201 LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 201 ~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
..+||..++++..|..+++|+..+. .....+..+ .+|++++.|.+| ++.+--.+..+.+||++....+..+.
T Consensus 362 --it~Dgk~vl~v~~d~~i~l~~~e~~---~dr~lise~--~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 362 --ITYDGKYVLLVTVDKKIRLYNREAR---VDRGLISEE--QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred --EcCCCcEEEEEecccceeeechhhh---hhhcccccc--CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 3357889999999999999999876 444445555 899999999999 77778889999999999988999999
Q ss_pred ccccCc--eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-cC-CCCEEEEEeCCCcEEEEECC
Q 017601 280 HCSKYE--ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 280 ~h~~~~--v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
|| +.. +..-+|--.+..+++|||.|+.|+||+..+++++..+.||+.-.+... .| +..++||+|+||+|+||...
T Consensus 435 Gh-kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 435 GH-KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred cc-cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99 543 445567665779999999999999999999999999999993332222 44 88999999999999999875
Q ss_pred C
Q 017601 356 A 356 (369)
Q Consensus 356 ~ 356 (369)
.
T Consensus 514 ~ 514 (519)
T KOG0293|consen 514 D 514 (519)
T ss_pred c
Confidence 4
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=181.51 Aligned_cols=247 Identities=15% Similarity=0.061 Sum_probs=192.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+..+|...|.+++|.-++ ..||+++.++.+.+|++..... .......+|.. .+--++|+|..+..+++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g----~~lasgs~dktv~v~n~e~~r~---~~~~~~~gh~~-----svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDG----TKLASGSFDKTVSVWNLERDRF---RKELVYRGHTD-----SVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HhhhhhhcceEEEEcccC----ceeeecccCCceEEEEecchhh---hhhhcccCCCc-----chhhheeCCCCCcceEE
Confidence 357899999999999874 7999999999999999985511 00111112221 23358999999999999
Q ss_pred EecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+ +.|++|++||.. ++...+... ...+ ++.+ +|+|++++++..|..|.+.|.|+. +.+...+.. ..+
T Consensus 83 a-s~dk~ir~wd~r~~k~~~~i~~~--~eni-~i~w---sp~g~~~~~~~kdD~it~id~r~~---~~~~~~~~~--~e~ 150 (313)
T KOG1407|consen 83 A-SGDKTIRIWDIRSGKCTARIETK--GENI-NITW---SPDGEYIAVGNKDDRITFIDARTY---KIVNEEQFK--FEV 150 (313)
T ss_pred e-cCCceEEEEEeccCcEEEEeecc--Ccce-EEEE---cCCCCEEEEecCcccEEEEEeccc---ceeehhccc--cee
Confidence 9 999999999975 344333222 2222 2222 257889999999999999999987 666666555 778
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+-++|+-++ .++.-...|.|.|.....-+++.+++.| ...+.++.|+| +|+++|+||.|..+.+||+..--|.+.|.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-PSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccC-CcceEEEEECC-CCceEeeccccceeeccChhHhhhheeec
Confidence 889998777 6666666799999999999999999999 99999999999 99999999999999999999988888887
Q ss_pred cCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 GDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
-+. ....+..+.||++||+||+|..|-|-++++|+.
T Consensus 229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred cccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 665 112333355999999999999999999999864
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-23 Score=191.81 Aligned_cols=245 Identities=16% Similarity=0.134 Sum_probs=190.5
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
...+..|.++.|-.| +.++|++|..|.|.++|..+. .....+..|..++. .+.|+|++..++++|
T Consensus 65 srFk~~v~s~~fR~D----G~LlaaGD~sG~V~vfD~k~r-----~iLR~~~ah~apv~-----~~~f~~~d~t~l~s~- 129 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSD----GRLLAAGDESGHVKVFDMKSR-----VILRQLYAHQAPVH-----VTKFSPQDNTMLVSG- 129 (487)
T ss_pred HhhccceeEEEeecC----CeEEEccCCcCcEEEeccccH-----HHHHHHhhccCcee-----EEEecccCCeEEEec-
Confidence 345688999999887 489999999999999995531 11223344443333 589999888888888
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.|+.+++||.....-.+....|...+....++|.+ +..++++|.||+|++||+|+.. ..+..+.+. .+|..+.
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~--~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg--~pVe~vl 203 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAN--DHIVVTGSYDGKVRLWDTRSLT--SRVVELNHG--CPVESVL 203 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCC--CeEEEecCCCceEEEEEeccCC--ceeEEecCC--CceeeEE
Confidence 999999999987554344444455666666655532 3478889999999999999863 566777765 9999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
|-|.| ++|+++. ..|+|||+-+| +.+..+..| ...|||+++.. +++.|+|+|.|+.|++||+.+-+.++.+.-..
T Consensus 204 ~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~ 280 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG 280 (487)
T ss_pred EcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeeccc
Confidence 99998 8888774 57999999964 555566668 89999999999 99999999999999999988888887775444
Q ss_pred CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 327 NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 327 ~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
....+..++|++.++.|-.||.+.+=+...+
T Consensus 281 pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 281 PVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 4467777789999999999999988755444
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=210.07 Aligned_cols=241 Identities=18% Similarity=0.200 Sum_probs=190.5
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|.+..|.++ .+.+++.+..+.+|+..+... ..-.+.+| .+++.+++|.. .+..++++ +.
T Consensus 207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH-----~g~V~~l~~~~-~~~~lvsg-S~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYL----ILTRLVGH-----FGGVWGLAFPS-GGDKLVSG-ST 269 (537)
T ss_pred CcchhhhheeecC------eEEecCCCceeEEeecccceE----EEeeccCC-----CCCceeEEEec-CCCEEEEE-ec
Confidence 5778888888743 778888888999999886521 00112223 23455899976 66778888 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|+++++||.. .+...+. .|...+..+.. ....+++++.|.+|++||+.++ .+++.+.+| ..+|+++.
T Consensus 270 D~t~rvWd~~sg~C~~~l~--gh~stv~~~~~-----~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h-~~~V~~v~ 338 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQ--GHTSSVRCLTI-----DPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGH-TGPVNCVQ 338 (537)
T ss_pred CCcEEeEecCCCcEEEEec--CCCceEEEEEc-----cCceEeeccCCceEEEEeccCc---ceEEEeccc-cccEEEEE
Confidence 9999999975 4555544 34555555542 2346666789999999999988 899988865 69999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCCC
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSN 327 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~ 327 (369)
.+ .+.+++|+.|++|+|||++++++++++.+| ...|+++.+.+ . .++++|+.|++|++||+++. +|+.++.+|..
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 88 349999999999999999999999999999 99999998876 4 89999999999999999999 99999999982
Q ss_pred eeeeeE-cCCCCEEEEEeCCCcEEEEECCCCcchhhhccc
Q 017601 328 WLGFSK-CSNRDVLGGWSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 328 ~~~~~~-~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
-+.. ...+.+|++++.|++|++||.++++. +.++++
T Consensus 415 --~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-~~~~~~ 451 (537)
T KOG0274|consen 415 --LVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-LRTLEG 451 (537)
T ss_pred --cccccccccceeEeccccccEEEeecccCce-eeeecc
Confidence 2222 23789999999999999999998874 445544
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=194.58 Aligned_cols=256 Identities=15% Similarity=0.162 Sum_probs=191.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++||+=+.||++ ++.||+++++.+..+|++..... +. ..+.+-+|.. ++.-+.|||+ +.++++|
T Consensus 220 l~~htdEVWfl~FS~n----GkyLAsaSkD~Taiiw~v~~d~~-~k-l~~tlvgh~~-----~V~yi~wSPD-dryLlaC 287 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHN----GKYLASASKDSTAIIWIVVYDVH-FK-LKKTLVGHSQ-----PVSYIMWSPD-DRYLLAC 287 (519)
T ss_pred HhhCCCcEEEEEEcCC----CeeEeeccCCceEEEEEEecCcc-ee-eeeeeecccC-----ceEEEEECCC-CCeEEec
Confidence 4689999999999998 48999999999999999875421 11 1222333322 3557999995 4566667
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|..+.+||... ....+... +...+..+.|. ||+..+++++.|+++..||+... .+...++-....|.
T Consensus 288 -g~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~---pDg~~~V~Gs~dr~i~~wdlDgn----~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 288 -GFDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWC---PDGFRFVTGSPDRTIIMWDLDGN----ILGNWEGVRDPKVH 358 (519)
T ss_pred -CchHheeeccCCcchhhhhcccC-cCCCcceeEEc---cCCceeEecCCCCcEEEecCCcc----hhhcccccccceeE
Confidence 7888899999753 22222211 11222223322 57889999999999999999754 33334433235699
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+++.++|| .+++-..|..|++++..+.........+ .+|+++..|. |++++++.=.+.++++||++..+.++.|.|
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~G 435 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFG 435 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhc
Confidence 99999999 8888889999999998876655544444 7899999999 999999999999999999999999999999
Q ss_pred CCCeeeeeE-cC---CCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 325 DSNWLGFSK-CS---NRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 325 ~~~~~~~~~-~~---d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|..-.-+.. |. +..+++|||+|+.|+||+..+++ .+..|.||.
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~LsGHs 482 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVLSGHS 482 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-eeEeecCCc
Confidence 983222222 44 67899999999999999999887 477788885
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=203.61 Aligned_cols=204 Identities=17% Similarity=0.162 Sum_probs=163.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
|++++.|.|....+++++ +.|+.|+||++- .+++++..+. ..+..+. +++++..|+++|-|+.+++||+.+
T Consensus 216 gvsai~~fp~~~hLlLS~-gmD~~vklW~vy~~~~~lrtf~gH~--k~Vrd~~---~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSG-GMDGLVKLWNVYDDRRCLRTFKGHR--KPVRDAS---FNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccchhhhccceeeEEEec-CCCceEEEEEEecCcceehhhhcch--hhhhhhh---ccccCCeeeeeecceeeeeecccc
Confidence 566899999666677777 999999999874 4455443322 2222222 345788999999999999999999
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
| +++.++... ..++|+.|+|++ .+++|+.|+.|+.||+|+++.++++..| -+.|..+.|-+ ++++++|.+.
T Consensus 290 G---~~~~~f~~~--~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h-Lg~i~~i~F~~-~g~rFissSD 362 (503)
T KOG0282|consen 290 G---QVLSRFHLD--KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH-LGAILDITFVD-EGRRFISSSD 362 (503)
T ss_pred c---eEEEEEecC--CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh-hhheeeeEEcc-CCceEeeecc
Confidence 9 899998876 899999999999 8899999999999999999999999999 89999999999 9999999999
Q ss_pred CCeEEEEECcCC----------------------------------------------ceeEEEEcCCC---eeeeeEcC
Q 017601 305 DYEVFCGQWRES----------------------------------------------SKVFAFRGDSN---WLGFSKCS 335 (369)
Q Consensus 305 D~~i~vwd~~~~----------------------------------------------~~~~~~~g~~~---~~~~~~~~ 335 (369)
|++++||+++.+ .....|+||.- ...+..++
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 999999998762 11222345541 12333467
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcchhhhcccC
Q 017601 336 NRDVLGGWSDSGSIFVADVVAKENEISALKGL 367 (369)
Q Consensus 336 d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~ 367 (369)
||.+|++|+.||.+++||.++-+ .+..+++|
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~k-l~~~lkah 473 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTK-LVSKLKAH 473 (503)
T ss_pred CCCeEEeecCCccEEEeechhhh-hhhccccC
Confidence 99999999999999999998875 34555544
No 63
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=3.6e-23 Score=200.25 Aligned_cols=220 Identities=13% Similarity=0.113 Sum_probs=157.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC--CccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD--VDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+.+|.+.|++++|+|.. ..+|++++.+|+|++|++...... .......+..|. ..+.+++|+|.+..+++
T Consensus 71 l~GH~~~V~~v~fsP~d---~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFD---PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCC---CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEEE
Confidence 57999999999999931 368999999999999999754210 001111223332 33668999997667888
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|++|+|||+...........+...+..+.+ ++++..|++++.|++|+|||++++ +.+..+..|....+.
T Consensus 143 Sg-s~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~---spdG~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~ 215 (493)
T PTZ00421 143 SA-GADMVVNVWDVERGKAVEVIKCHSDQITSLEW---NLDGSLLCTTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQ 215 (493)
T ss_pred EE-eCCCEEEEEECCCCeEEEEEcCCCCceEEEEE---ECCCCEEEEecCCCEEEEEECCCC---cEEEEEecCCCCcce
Confidence 88 89999999998643222222224444555553 346778888999999999999988 777777766223455
Q ss_pred EEEECCCC-cEEEEe----CCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCce
Q 017601 246 AVCSSSTG-NIAVAG----ADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSK 318 (369)
Q Consensus 246 ~v~~sp~g-~lasgs----~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~ 318 (369)
.+.|.+++ .+++++ .|+.|++||+++.. ++.....+....+....|++ ++++|++++ .|+.|++||+.+++.
T Consensus 216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCce
Confidence 67899987 665543 58999999999854 44444444244566778899 999999888 499999999999887
Q ss_pred eEEEE
Q 017601 319 VFAFR 323 (369)
Q Consensus 319 ~~~~~ 323 (369)
.+.+.
T Consensus 295 ~~~~~ 299 (493)
T PTZ00421 295 TFCSS 299 (493)
T ss_pred EEEee
Confidence 76654
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=176.03 Aligned_cols=240 Identities=16% Similarity=0.187 Sum_probs=180.4
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC--CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK--DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-.+.|++|.|++++ ..+++.+.+-.+.++|...+.. .+...+| |+-.+.|-......+.++.
T Consensus 13 ~~~~i~sl~fs~~G----~~litss~dDsl~LYd~~~g~~~~ti~skky------------G~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG----LLLITSSEDDSLRLYDSLSGKQVKTINSKKY------------GVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCC----CEEEEecCCCeEEEEEcCCCceeeEeecccc------------cccEEEEecCCceEEEccC
Confidence 46889999999984 6677777777999999986632 1222222 2334777665555666554
Q ss_pred cccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 169 SFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
-.|.+|+..++. +.+|-+. .|...|+.+...| -+..+++++.|++|++||+|.. +|...+... .-..
T Consensus 77 k~d~tIryLsl~dNkylRYF~--GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~---~cqg~l~~~---~~pi 145 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFP--GHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVK---KCQGLLNLS---GRPI 145 (311)
T ss_pred CCCCceEEEEeecCceEEEcC--CCCceEEEEEecC---CCCeEEecccCCeEEeeEecCC---CCceEEecC---CCcc
Confidence 568999999874 4454443 2556667766544 4579999999999999999987 565544432 2235
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
+||.|+| .+|+|.....|+|||+|. ..+..++. +. ..+.+.+.||| ||++++.+...+.+++.|.-.|..+.
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~-~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND-EAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC-ccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEee
Confidence 7899999 888888888999999998 34555443 34 57899999999 99999999999999999999999999
Q ss_pred EEEcCCCee----eeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNWL----GFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~----~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+|.++.+-. .....||++++++|+.||+|.+|++++++.
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 998876322 222367999999999999999999999864
No 65
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.1e-23 Score=180.90 Aligned_cols=216 Identities=19% Similarity=0.203 Sum_probs=159.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc-----cccccc-cCCCCCCCCCCeeEEEECCCCc
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD-----RLTYSV-LPQDCGVGEGSWSGLCFSPSQW 161 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~p~~~ 161 (369)
..+|.+.|+++.+.+.+ +..+.|+..+|.+-+||++...+-.. .++-.+ .+|. ..++-++..+-|-|.+.
T Consensus 39 ~r~HgGsvNsL~id~te---grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~-~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTE---GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHE-NGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeecccc---ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCC-ccceeeeeeeEEeeecC
Confidence 35799999999999886 68899999999999999986531000 000001 1121 12234577899999999
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+++.++ |+|+++++||........ .+.-+..+-..+..|... ...|+| +..|-+|++-|+.++ .+-+.+.+|
T Consensus 115 GmFtss-SFDhtlKVWDtnTlQ~a~-~F~me~~VYshamSp~a~-sHcLiA~gtr~~~VrLCDi~SG---s~sH~LsGH- 187 (397)
T KOG4283|consen 115 GMFTSS-SFDHTLKVWDTNTLQEAV-DFKMEGKVYSHAMSPMAM-SHCLIAAGTRDVQVRLCDIASG---SFSHTLSGH- 187 (397)
T ss_pred ceeecc-cccceEEEeecccceeeE-EeecCceeehhhcChhhh-cceEEEEecCCCcEEEEeccCC---cceeeeccc-
Confidence 999988 999999999987543222 122222222222223222 234554 557889999999999 899999998
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCc-eeeeecc--------------ccccCceEEEEEcCCCCCEEEEEE
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRW-SALSRWV--------------HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~-~~~~~~~--------------~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.+.|.++.|+|.. .||+|+.||.|++||+|+- .++..+. .| .+.|.+++|+. ++.++++++
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tS-d~~~l~~~g 265 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTS-DARYLASCG 265 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecc-cchhhhhcc
Confidence 8999999999998 8999999999999999974 3443333 45 67899999999 999999999
Q ss_pred CCCeEEEEECcCC
Q 017601 304 VDYEVFCGQWRES 316 (369)
Q Consensus 304 ~D~~i~vwd~~~~ 316 (369)
.|..+++|+...+
T Consensus 266 td~r~r~wn~~~G 278 (397)
T KOG4283|consen 266 TDDRIRVWNMESG 278 (397)
T ss_pred CccceEEeecccC
Confidence 9999999998764
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.92 E-value=2.7e-23 Score=197.48 Aligned_cols=257 Identities=18% Similarity=0.165 Sum_probs=199.7
Q ss_pred ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 83 SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 83 ~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
...+++.+|+.+|.++++|.++ .+++|+.. +.+.+|+.++... ...+.. +-+.+..|-| ++.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~----~~~~Sga~-~SikiWn~~t~kc-----iRTi~~-------~y~l~~~Fvp-gd~ 425 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS----ILLASGAG-ESIKIWNRDTLKC-----IRTITC-------GYILASKFVP-GDR 425 (888)
T ss_pred cceeeeccchhheeEEEeecCc----eeeeecCC-CcEEEEEccCcce-----eEEecc-------ccEEEEEecC-CCc
Confidence 4556788999999999999884 67777654 6899999986521 112111 1133688999 666
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC--Cce--e---
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN--GGC--L--- 233 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~--~~~--~--- 233 (369)
++++| ...|.+.+||... .+.+++ .|...+-.++ .+||+..++++|.|.+|++||..--.. +.. +
T Consensus 426 ~Iv~G-~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 426 YIVLG-TKNGELQVFDLASASLVETIR--AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred eEEEe-ccCCceEEEEeehhhhhhhhh--ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 77777 7899999999752 233332 2444444444 346788999999999999999862211 111 1
Q ss_pred ---eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 234 ---HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 234 ---~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+++.. ...|.|+++|||| +||++=-|.+|+||-+.+.+-.-++.|| +-+|.++..|| |++.+++||.|+.|+
T Consensus 500 ~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH-kLPV~smDIS~-DSklivTgSADKnVK 575 (888)
T KOG0306|consen 500 KHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH-KLPVLSMDISP-DSKLIVTGSADKNVK 575 (888)
T ss_pred ccceEEec--cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc-ccceeEEeccC-CcCeEEeccCCCceE
Confidence 22333 3889999999999 9999999999999999999999999999 99999999999 999999999999999
Q ss_pred EEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 310 CGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+|-++=|.|...|-+|... +.+..+|...++++++.|+.|+-||-+.-+ .++.|.||.
T Consensus 576 iWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~~H~ 634 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLDGHH 634 (888)
T ss_pred EeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeeccch
Confidence 9999999999999998732 556668888899999999999999987665 577788774
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=3.3e-24 Score=191.33 Aligned_cols=244 Identities=15% Similarity=0.173 Sum_probs=189.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+-.|.++|+.+.|-++. ..++++..+-.|.+|++..+..+..+ .+.+ .-+++..+.|.+++...|| +
T Consensus 171 ld~h~gev~~v~~l~~s----dtlatgg~Dr~Ik~W~v~~~k~~~~~---tLaG-----s~g~it~~d~d~~~~~~iA-a 237 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNS----DTLATGGSDRIIKLWNVLGEKSELIS---TLAG-----SLGNITSIDFDSDNKHVIA-A 237 (459)
T ss_pred hhccccccceeEEccCc----chhhhcchhhhhhhhhcccchhhhhh---hhhc-----cCCCcceeeecCCCceEEe-e
Confidence 45799999999998873 68999999999999999865321111 1111 1234678999996655444 4
Q ss_pred ecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|+.+++|+++. ...++.. |...+....... ....+++++.|.++++||++.. .|.+++... ..++
T Consensus 238 -s~d~~~r~Wnvd~~r~~~TLsG--HtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~---~C~kt~l~~--S~cn 306 (459)
T KOG0288|consen 238 -SNDKNLRLWNVDSLRLRHTLSG--HTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKA---YCSKTVLPG--SQCN 306 (459)
T ss_pred -cCCCceeeeeccchhhhhhhcc--cccceeeehhhc---cccceeeccccchhhhhhhhhh---heecccccc--cccc
Confidence 6999999999873 2233332 444444444322 1235889999999999999987 787776543 6677
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
.|+.+ . .+++|..|++|++||+|...+..+...+ +.|++|..++ ++..|++++.|.++.+.|+++.+....|+.
T Consensus 307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ceEec--ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeec
Confidence 77665 5 8899999999999999999999999987 5999999999 999999999999999999999888888864
Q ss_pred C-----CCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 325 D-----SNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 325 ~-----~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
. +.|..+..+|++.++++||.||.|+||++.+++.+
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 3 34556666889999999999999999999998753
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2e-23 Score=190.96 Aligned_cols=256 Identities=16% Similarity=0.129 Sum_probs=183.5
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+++.+|+..|.++++.|. +.++++++-+=.|.+||+..-...... -..++|... -.+.+++|++.++.+|+
T Consensus 161 i~l~hgtk~Vsal~~Dp~----GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~----h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS----GARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCET----HQINSLQYSVTGDQILV 231 (641)
T ss_pred EeccCCceEEEEeeecCC----CceeeeccccceEEEEecccccccchh-hhccCcccc----cccceeeecCCCCeEEE
Confidence 446788999999999987 479999998889999999855322211 223444321 12458999998887776
Q ss_pred EEecccceEEEEeCCcc-----------eEEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 166 VARSFSKSIDVYDQDIH-----------LRTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~-----------~~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
+. .....+|+|-+.. ++.+ .+..|...++...|+|.+. +.|++++.|++++|||+...+ +.+
T Consensus 232 vs--g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--~~FlT~s~DgtlRiWdv~~~k--~q~ 305 (641)
T KOG0772|consen 232 VS--GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--EEFLTCSYDGTLRIWDVNNTK--SQL 305 (641)
T ss_pred Ee--cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc--cceEEecCCCcEEEEecCCch--hhe
Confidence 65 4567889986421 1222 1223555666777777654 689999999999999998654 333
Q ss_pred eeeecc----CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eee-ccccccC--ceEEEEEcCCCCCEEEEEE
Q 017601 234 HRICGS----VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSR-WVHCSKY--EITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 234 ~~~~~~----~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~-~~~h~~~--~v~~l~~sp~d~~~l~s~s 303 (369)
+.+.+. ..-++++++|+|+| +||+|..||+|.+||.++... ... -..| .. .|++|.||+ ||++|+|-|
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH-~~g~~Itsi~FS~-dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAH-LPGQDITSISFSY-DGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeecc-CCCCceeEEEecc-ccchhhhcc
Confidence 334321 14578999999999 999999999999999876432 222 2366 66 899999999 999999999
Q ss_pred CCCeEEEEECcC-CceeEEEEcCCCe---eeeeEcCCCCEEEEEeC------CCcEEEEECCCCc
Q 017601 304 VDYEVFCGQWRE-SSKVFAFRGDSNW---LGFSKCSNRDVLGGWSD------SGSIFVADVVAKE 358 (369)
Q Consensus 304 ~D~~i~vwd~~~-~~~~~~~~g~~~~---~~~~~~~d~~~l~sgs~------dg~I~iWd~~~~~ 358 (369)
.|.++++||++. .++++.+.|-.+. .....+|+.++|++|+. .|+++++|..+-+
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 999999999987 5666666553211 12233568899999874 4789999987654
No 69
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=171.51 Aligned_cols=205 Identities=12% Similarity=0.138 Sum_probs=168.8
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR 225 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~ 225 (369)
++.+..+.|+-++ ++.++| +.|++|+||+.- ..++++... ...+--.. .+.|+..|++++.|..+.+||+.
T Consensus 17 qgaV~avryN~dG-nY~ltc-GsdrtvrLWNp~rg~liktYsgh--G~EVlD~~---~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 17 QGAVRAVRYNVDG-NYCLTC-GSDRTVRLWNPLRGALIKTYSGH--GHEVLDAA---LSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccceEEEEEccCC-CEEEEc-CCCceEEeecccccceeeeecCC--Cceeeecc---ccccccccccCCCCceEEEEEcc
Confidence 4456789999854 566666 789999999974 455554332 22232222 12356799999999999999999
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
++ +.++++.+| ...|+++.|+.+. .+++|+.|.++++||-|+ .+|++.+... .+.|.++..+. ..+++|
T Consensus 90 TG---kv~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~---heIvaG 161 (307)
T KOG0316|consen 90 TG---KVDRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAE---HEIVAG 161 (307)
T ss_pred cC---eeeeecccc-cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEecc---cEEEee
Confidence 99 899999988 8999999999999 999999999999999887 6788898888 89999999876 789999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
|.||++|.+|++.+...-.+.||. ..++..++|++.+..++.|+++++-|-.+|+ .+...+||.|
T Consensus 162 S~DGtvRtydiR~G~l~sDy~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGk-lL~sYkGhkn 226 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDYFGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGK-LLKSYKGHKN 226 (307)
T ss_pred ccCCcEEEEEeecceeehhhcCCc-ceeEEecCCCCEEEEeeccceeeecccchhH-HHHHhccccc
Confidence 999999999999999988888887 1344557799999999999999999999997 4677888876
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=4e-23 Score=178.47 Aligned_cols=296 Identities=14% Similarity=0.179 Sum_probs=209.4
Q ss_pred EecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEE
Q 017601 35 HVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV 114 (369)
Q Consensus 35 ~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~ 114 (369)
.++++| .++|+|..=..|++---..++...+..-.++.+++.-++-+-++..|.++|+++.|.|.+ .+|+|+
T Consensus 119 afs~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre----~ILiS~ 190 (430)
T KOG0640|consen 119 AFSPDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE----TILISG 190 (430)
T ss_pred eeCCCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh----heEEec
Confidence 355777 688988765555542223444333322234555555666677788999999999999985 799999
Q ss_pred ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEEeeeC
Q 017601 115 DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLRTLWY 191 (369)
Q Consensus 115 d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~~ 191 (369)
+.+++|.+||+.+... ...+.+-.. -..+.+++|+|.++ +++++ -.-.++++||+..... .....+|
T Consensus 191 srD~tvKlFDfsK~sa---KrA~K~~qd-----~~~vrsiSfHPsGe-fllvg-TdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSA---KRAFKVFQD-----TEPVRSISFHPSGE-FLLVG-TDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cCCCeEEEEecccHHH---HHHHHHhhc-----cceeeeEeecCCCc-eEEEe-cCCCceeEEeccceeEeeecCccccc
Confidence 9999999999975421 111111000 12356899999655 56666 5678999999864321 1122335
Q ss_pred CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec-cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeC
Q 017601 192 PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG-SVGDILYAVCSSSTG-NIAVAGADRTVTIYDP 269 (369)
Q Consensus 192 ~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~ 269 (369)
...++.+.+ ++.+..+++++.||.|+|||--++ +|+.++.. |.+..|.+..|..+| ++.+.+.|.+|++|.+
T Consensus 261 t~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGVS~---rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRY---SSTGSLYVTASKDGAIKLWDGVSN---RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred ccceeEEEe---cCCccEEEEeccCCcEEeeccccH---HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 556666664 345678899999999999998887 89888762 326889999999999 9999999999999999
Q ss_pred CCceeeeeccccc----cCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCCceeEEE-EcCCCe-eeeeEcCCCCEEEE
Q 017601 270 RRWSALSRWVHCS----KYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRESSKVFAF-RGDSNW-LGFSKCSNRDVLGG 342 (369)
Q Consensus 270 ~~~~~~~~~~~h~----~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~~~~~~~-~g~~~~-~~~~~~~d~~~l~s 342 (369)
.+++++.++.|.- +.--+...|+. ...+++.-.. .+.++.||.++......+ .||.+. ..+..+|.+..+.+
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceee
Confidence 9999999887540 12235566777 7777766433 468999999997665555 366522 23556888899999
Q ss_pred EeCCCcEEEEECC
Q 017601 343 WSDSGSIFVADVV 355 (369)
Q Consensus 343 gs~dg~I~iWd~~ 355 (369)
+|.|..+++|--+
T Consensus 414 csdD~raRFWyrr 426 (430)
T KOG0640|consen 414 CSDDFRARFWYRR 426 (430)
T ss_pred ecccceeeeeeec
Confidence 9999999999643
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-21 Score=160.79 Aligned_cols=245 Identities=15% Similarity=0.185 Sum_probs=174.5
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECC---CCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP---SQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p---~~~~~~a 165 (369)
..|++.|+|.+|+|++ .++|+++.+..|.+...+.......++...++-|+ +-+..++|-. .+..+++
T Consensus 86 khhkgsiyc~~ws~~g----eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----gtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCG----ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----GTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred cccCccEEEEEecCcc----CeEEecCCCceEEEEecccccccccCcceeeeecC-----CceeeeEEecCCCcCceEEE
Confidence 4689999999999984 89999999999988766644333333333333333 3355788843 2345677
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCc-ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPS-SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-- 240 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-- 240 (369)
+++..|-.|.+-|-+ +..+.+.. |.. .+....| .+-.+++++.|.+|++||+|-. .++.++....
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sg--htghilalysw-----n~~m~~sgsqdktirfwdlrv~---~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSG--HTGHILALYSW-----NGAMFASGSQDKTIRFWDLRVN---SCVNTLDNDFHD 226 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecC--CcccEEEEEEe-----cCcEEEccCCCceEEEEeeecc---ceeeeccCcccC
Confidence 775556666666643 33333322 222 2333333 2457788899999999999988 7777654211
Q ss_pred ----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 ----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|.+++..|.| +|++|-.|.+..+||+|-+++++.+..| ...|.++.||| ...+++++|.|..|++-|++.
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp-~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCC-CceEEEEecccceEEEeeccc
Confidence 2679999999999 9999999999999999999999999999 99999999999 999999999999999999975
Q ss_pred C---c-eeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 316 S---S-KVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 316 ~---~-~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
. + .+.....|.. ...+..-+..--+++.|.|.++.+|-+
T Consensus 305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 2 1 2222223431 112222345556889999999999975
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.7e-24 Score=203.77 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=164.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
|++|+|..+- +.++ -..|.|++||... .+..+.. |...+.-+.+++ ....|+++++|-+|++|+.++.
T Consensus 14 glsFHP~rPw-ILts-lHsG~IQlWDYRM~tli~rFde--HdGpVRgv~FH~---~qplFVSGGDDykIkVWnYk~r--- 83 (1202)
T KOG0292|consen 14 GLSFHPKRPW-ILTS-LHSGVIQLWDYRMGTLIDRFDE--HDGPVRGVDFHP---TQPLFVSGGDDYKIKVWNYKTR--- 83 (1202)
T ss_pred ceecCCCCCE-EEEe-ecCceeeeehhhhhhHHhhhhc--cCCccceeeecC---CCCeEEecCCccEEEEEecccc---
Confidence 7999997774 5555 6899999999753 3333333 334444444433 3459999999999999999998
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+|+.++.+| -+.|..+.|++.- +|+++|+|.||+||+..+.+++..+.|| ...|.+..|+| ....++|+|.|.+||
T Consensus 84 rclftL~GH-lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhp-tEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 84 RCLFTLLGH-LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHP-TEDLIVSASLDQTVR 160 (1202)
T ss_pred eehhhhccc-cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCC-ccceEEEecccceEE
Confidence 899999988 7999999999999 9999999999999999999999999999 99999999999 889999999999999
Q ss_pred EEECcC--------C---------------------ceeEEEEcCCCeeeeeEc---CCCCEEEEEeCCCcEEEEECCCC
Q 017601 310 CGQWRE--------S---------------------SKVFAFRGDSNWLGFSKC---SNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 310 vwd~~~--------~---------------------~~~~~~~g~~~~~~~~~~---~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+||+.. + -..+.+.||. .++..+ +.-.+|+||++|+.|++|.+...
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD--RGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD--RGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc--cccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999853 1 1234557887 344332 35689999999999999998766
Q ss_pred cc-hhhhcccCCC
Q 017601 358 EN-EISALKGLVN 369 (369)
Q Consensus 358 ~~-~~~~l~g~~~ 369 (369)
+. ++++..||+|
T Consensus 239 KaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYN 251 (1202)
T ss_pred cceeehhhhcccC
Confidence 54 7789999986
No 73
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=7.4e-23 Score=184.90 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=186.6
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|.+.|.+++|.|.+ ...++|++|..|+|-+||+.+...+.++ .|...+|..+ +.++.|+|.+...+.++ |
T Consensus 184 v~~~Rit~l~fHPt~--~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~-----Vs~l~F~P~n~s~i~ss-S 254 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTE--NRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGP-----VSGLKFSPANTSQIYSS-S 254 (498)
T ss_pred ecccceEEEEecccC--cceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCcc-----ccceEecCCChhheeee-c
Confidence 578999999999975 4589999999999999999644333333 4555666544 45899999999999998 9
Q ss_pred ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
+||+|++-|....+...-.......+ .+....++.++..++.+..=|.+.+||+|++. .....+..| ...|.++++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh-~kKI~sv~~ 330 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLH-KKKITSVAL 330 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccce-eeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhh-hcccceeec
Confidence 99999999987543221111111112 22223344566788888776799999999883 334444434 479999999
Q ss_pred CCCC--cEEEEeCCCcEEEEeCCCce----eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc----CCcee
Q 017601 250 SSTG--NIAVAGADRTVTIYDPRRWS----ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR----ESSKV 319 (369)
Q Consensus 250 sp~g--~lasgs~D~~v~vwD~~~~~----~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~----~~~~~ 319 (369)
+|.. .|||+|.|++++|||+|+-. ++-....| +..|.+..||| ++..|++.+.|.+|+|||.. .-+..
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H-rrsV~sAyFSP-s~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH-RRSVNSAYFSP-SGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccc-cceeeeeEEcC-CCCceEeeccCCceEEeecccccccCCcc
Confidence 9999 99999999999999999732 23344568 89999999999 66669999999999999983 33333
Q ss_pred EEEE---cCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 320 FAFR---GDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~---g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.++. -+.+|....+ -++..+|+.|-.-..|-|+|-..++
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 3332 2335554433 3488899999999999999988776
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=181.40 Aligned_cols=255 Identities=16% Similarity=0.201 Sum_probs=198.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+.+.-+.|..||||+ ..|++++.+|-+.+|++.++.-. ...+|..+.. -...+..+.+++|+. +..++|++
T Consensus 209 KFg~KSh~EcA~FSPDg----qyLvsgSvDGFiEVWny~~GKlr-KDLkYQAqd~-fMMmd~aVlci~FSR-DsEMlAsG 281 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDG----QYLVSGSVDGFIEVWNYTTGKLR-KDLKYQAQDN-FMMMDDAVLCISFSR-DSEMLASG 281 (508)
T ss_pred ecccccchhheeeCCCC----ceEeeccccceeeeehhccchhh-hhhhhhhhcc-eeecccceEEEeecc-cHHHhhcc
Confidence 35777889999999994 79999999999999999877321 1223433211 122344577899999 66789998
Q ss_pred ecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+-||.|++|.+ +.+++.+.. .|...+..+. |+.|+..+++++.|.+++|.-++++ ++++.+.+| ...|+
T Consensus 282 -sqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSG---K~LKEfrGH-sSyvn 352 (508)
T KOG0275|consen 282 -SQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSG---KCLKEFRGH-SSYVN 352 (508)
T ss_pred -CcCCcEEEEEEecchHHHHhhh-hhccCeeEEE---EccCcchhhcccccceEEEeccccc---hhHHHhcCc-ccccc
Confidence 99999999976 455555431 2333344433 2346789999999999999999999 999999988 78899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
...|+++| .+++++.||+|++|+.++.+++.+++ +. ..+|+++-.-|.++..++.+-..++|.+-++. +..++.|
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~-d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT-DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC-cccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeee
Confidence 99999999 99999999999999999999999887 34 56899999988889999999999999999885 4566777
Q ss_pred Ec-CC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 323 RG-DS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 323 ~g-~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
.. .. .+.+...+|.|+++++.++|+.++.+.+.+|+.+
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 42 21 1122222568999999999999999999888753
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=4.9e-23 Score=177.93 Aligned_cols=253 Identities=14% Similarity=0.151 Sum_probs=185.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCC------CCCCcccc-------ccccCCCCCCCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTS------GKDVDRLT-------YSVLPQDCGVGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~l 154 (369)
+..|++.+.+.+|++|+ .++|+++.+..|.++|+..- .+.+.+.. ..+.-|. ..+..+
T Consensus 108 lt~HK~~cR~aafs~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~-----devn~l 178 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV-----DEVNDL 178 (430)
T ss_pred EeecccceeeeeeCCCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc-----Ccccce
Confidence 56899999999999994 79999999999999998721 11011100 0011111 235689
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.|+| .+.+++++ +.|++|++||..+. .+.++.++....+..+.++ |.|..++.+.+-.++++||+.+- +|
T Consensus 179 ~FHP-re~ILiS~-srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfH---PsGefllvgTdHp~~rlYdv~T~---Qc 250 (430)
T KOG0640|consen 179 DFHP-RETILISG-SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFH---PSGEFLLVGTDHPTLRLYDVNTY---QC 250 (430)
T ss_pred eecc-hhheEEec-cCCCeEEEEecccHHHHHHHHHhhccceeeeEeec---CCCceEEEecCCCceeEEeccce---eE
Confidence 9999 66788888 99999999998632 2334444444444444443 34667777888889999999987 66
Q ss_pred eeeee---ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 233 LHRIC---GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 233 ~~~~~---~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
...-. .+ .+.|+++.+|+.| +.++||.||.|++||--+++++.++. .|-..+|.+..|+. ++++++|.|.|..
T Consensus 251 fvsanPd~qh-t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 251 FVSANPDDQH-TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDST 328 (430)
T ss_pred eeecCccccc-ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcce
Confidence 54322 22 5889999999999 99999999999999998999999887 45356899999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCeeeeeE------cCCCCEEEEEe-CCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESSKVFAFRGDSNWLGFSK------CSNRDVLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~~~~~------~~d~~~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
+++|.+.+++++..+.|...-..... ....++++.-. ..+.+.-||.++...
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 99999999999999987530000000 11445554444 467899999998764
No 76
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.3e-22 Score=168.24 Aligned_cols=196 Identities=14% Similarity=0.188 Sum_probs=157.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe---eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT---LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~---~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
.+||+|..+.+||+| +.|+.|+||+... .....++ ..|...+..+++ +|.++.|+++|.|.++.||--..+
T Consensus 19 ~~awhp~~g~ilAsc-g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La~aSFD~t~~Iw~k~~~- 93 (312)
T KOG0645|consen 19 SVAWHPGKGVILASC-GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLASASFDATVVIWKKEDG- 93 (312)
T ss_pred EEEeccCCceEEEee-cCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEEEeeccceEEEeecCCC-
Confidence 699999546678888 9999999999862 2222221 135556666664 345778888999999999976543
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.-+++.++.+| ...|-|++||++| +||+++.|++|-||.+.. .++...++.| ...|-.+.|+| ...+|+|+|.
T Consensus 94 efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHP-t~dlL~S~SY 170 (312)
T KOG0645|consen 94 EFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHP-TEDLLFSCSY 170 (312)
T ss_pred ceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcC-CcceeEEecc
Confidence 23678889988 8999999999999 999999999999999874 5677889999 99999999999 8999999999
Q ss_pred CCeEEEEECcC---CceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 305 DYEVFCGQWRE---SSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 305 D~~i~vwd~~~---~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|++|++|.-.. -++.+++.+|.+ .-.+...+.|..|+++++|++|+||...+
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc
Confidence 99999998763 368999999972 11333355799999999999999998543
No 77
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=7.3e-22 Score=192.38 Aligned_cols=186 Identities=11% Similarity=0.023 Sum_probs=142.3
Q ss_pred ecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-----CceeeeeeccCCC
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-----GGCLHRICGSVGD 242 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-----~~~~~~~~~~~~~ 242 (369)
++.++.|++|+..+.........|...+..+.+.|+ ++..|++++.|++|+|||++++.. ..++..+.+| ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~--~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC--FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCC--CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CC
Confidence 467889999997653322223345566767765543 246888899999999999986421 0233455655 68
Q ss_pred cEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 243 ILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 243 ~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
.|.+++|+|++ .|++|+.|++|+|||+++++.+..+. | ...|.+++|+| +|.+|++++.|+.|+|||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEE
Confidence 89999999998 56899999999999999998877775 5 57899999999 99999999999999999999999999
Q ss_pred EEEcCCCeeeee--E----cCCCCEEEEEeCCC----cEEEEECCCCcc
Q 017601 321 AFRGDSNWLGFS--K----CSNRDVLGGWSDSG----SIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~~~~--~----~~d~~~l~sgs~dg----~I~iWd~~~~~~ 359 (369)
.+.+|....... . .+++.+|++++.|+ +|+|||+++...
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 999987321111 1 25778888887774 799999986443
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=193.54 Aligned_cols=248 Identities=13% Similarity=0.182 Sum_probs=181.5
Q ss_pred Cccceee---EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 90 PHRSEVQ---SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 90 ~H~~~V~---~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.|+..|+ .+..+..+ ...|.+++.+|.|++|+........... ...++.|.. -+..++... ++..++
T Consensus 19 qn~~~v~~~~~Lq~da~~---~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-----WVNDiiL~~-~~~tlI 89 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPN---GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-----WVNDIILCG-NGKTLI 89 (735)
T ss_pred hccccccchhhccccCCC---CceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-----HHhhHHhhc-CCCceE
Confidence 4556666 55555543 3579999999999999998664321111 112222321 112344444 334677
Q ss_pred EEecccceEEEEeCCcc----eEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-------Ccee
Q 017601 166 VARSFSKSIDVYDQDIH----LRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-------GGCL 233 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-------~~~~ 233 (369)
++ |.|.+|++|+.... .++++.+. ...++++.. ++...++++|-|+.|+|||+.++.. ....
T Consensus 90 S~-SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-----k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 90 SA-SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-----KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred Ee-cCCceEEEeecccCcchhHhhhhcccchheeeeecc-----cCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 77 89999999997543 33343322 223344332 3345677788899999999997621 1111
Q ss_pred eeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 234 HRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 234 ~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
..+. ++ ...||+++-++.| .|++|+..+-+++||.|+.+.+..+.|| ++.|..+..++ ||+.++|+|.|++|++|
T Consensus 164 ~sl~sG~-k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~d-DGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 164 NSLGSGP-KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVND-DGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccCCCCC-ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcC-CCCeEeecCCCceEEee
Confidence 2222 33 5789999999999 9999999999999999999999999999 99999999999 99999999999999999
Q ss_pred ECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCC
Q 017601 312 QWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|+...+|++++..|. .++.. .++=..+++|+.||.|+.=|+++.
T Consensus 241 dLgqQrCl~T~~vH~--e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHK--EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccccceeeeEEecc--CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999998 44433 335568999999999999999874
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5e-22 Score=186.79 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=182.3
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccC-CCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLP-QDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+..|.++.|++++ ..||.+-.+|.|.+||...... ...+.. |. .-|.+++|+. ..+.++ +.
T Consensus 217 ~~~vtSv~ws~~G----~~LavG~~~g~v~iwD~~~~k~-----~~~~~~~h~-----~rvg~laW~~---~~lssG-sr 278 (484)
T KOG0305|consen 217 EELVTSVKWSPDG----SHLAVGTSDGTVQIWDVKEQKK-----TRTLRGSHA-----SRVGSLAWNS---SVLSSG-SR 278 (484)
T ss_pred CCceEEEEECCCC----CEEEEeecCCeEEEEehhhccc-----cccccCCcC-----ceeEEEeccC---ceEEEe-cC
Confidence 8999999999984 7999999999999999876522 111111 21 2255789974 455555 99
Q ss_pred cceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
|+.|..+|+......+. ...|...+.-+.+ ++|+.++++++.|+.+.|||.... .++.++..| ...|.+++|
T Consensus 279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw---s~d~~~lASGgnDN~~~Iwd~~~~---~p~~~~~~H-~aAVKA~aw 351 (484)
T KOG0305|consen 279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKW---SPDGNQLASGGNDNVVFIWDGLSP---EPKFTFTEH-TAAVKALAW 351 (484)
T ss_pred CCcEEEEEEecchhhhhhhhcccceeeeeEE---CCCCCeeccCCCccceEeccCCCc---cccEEEecc-ceeeeEeee
Confidence 99999999863332222 2224444544543 346788889999999999999766 677777766 699999999
Q ss_pred CCCC--cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEc
Q 017601 250 SSTG--NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 250 sp~g--~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|-. +||+|+ .|+.|++||..++..+..+... ..|.+|.|++....++.+-| .++.|.||++.+-..+..+.|
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC
Confidence 9987 899864 6999999999999999887754 78999999993334444434 477999999999999999999
Q ss_pred CCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 325 DSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 325 ~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|.. ...+..+|||..|++|+.|.++++|++-..
T Consensus 430 H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 430 HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 982 233344779999999999999999998663
No 80
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.3e-23 Score=196.16 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=179.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..++.+.|..- ...+||+++..|.|-+||+...... ...+.+..|... +..+.|++..+.++++| |-|+
T Consensus 88 ~S~~DVkW~~~---~~NlIAT~s~nG~i~vWdlnk~~rn--k~l~~f~EH~Rs-----~~~ldfh~tep~iliSG-SQDg 156 (839)
T KOG0269|consen 88 YSAADVKWGQL---YSNLIATCSTNGVISVWDLNKSIRN--KLLTVFNEHERS-----ANKLDFHSTEPNILISG-SQDG 156 (839)
T ss_pred eehhhcccccc---hhhhheeecCCCcEEEEecCccccc--hhhhHhhhhccc-----eeeeeeccCCccEEEec-CCCc
Confidence 55677788632 2479999999999999999863211 112334445443 34799999999998888 9999
Q ss_pred eEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEEC
Q 017601 173 SIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSS 250 (369)
Q Consensus 173 ~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~s 250 (369)
+|++||+.. ...+++. ...++..+.+.| ..+..|+++.+.|.+++||+|... ++...+..| .++|+|+.|+
T Consensus 157 ~vK~~DlR~~~S~~t~~~--nSESiRDV~fsp--~~~~~F~s~~dsG~lqlWDlRqp~--r~~~k~~AH-~GpV~c~nwh 229 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTFRS--NSESIRDVKFSP--GYGNKFASIHDSGYLQLWDLRQPD--RCEKKLTAH-NGPVLCLNWH 229 (839)
T ss_pred eEEEEeeecccccccccc--cchhhhceeecc--CCCceEEEecCCceEEEeeccCch--hHHHHhhcc-cCceEEEeec
Confidence 999999853 2333322 333344444333 235688889999999999999875 566666655 6999999999
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCC-ceeEEEEcCC
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRES-SKVFAFRGDS 326 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~-~~~~~~~g~~ 326 (369)
|++ +|||||.|++|+|||+...+......-+-..+|..|.|-|....+|+++++ |..|+|||++.. -+..+|..|.
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 998 999999999999999987554433333325789999999966777888875 789999999874 4567777777
Q ss_pred CeeeeeE--cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 327 NWLGFSK--CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 327 ~~~~~~~--~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
...+-.. ..|...+.+++.||+|..-.++++-.
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 3322222 22677899999999987655555443
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=7.6e-23 Score=184.80 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=158.3
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEE----------EEeeeCCcceeeeccCCCCCCCCcEEEEEcCC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT----------LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC 217 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~ 217 (369)
++.+..+..-|+++.++|+. +..+.|.|||..++... ++...|...-.-+.|.++ ..+.|+++++|+
T Consensus 124 ~gEVnRaRymPQnp~iVAt~-t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~--~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVATK-TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ--QEGTLLSGSDDH 200 (422)
T ss_pred CccchhhhhCCCCCcEEEec-CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc--cceeEeeccCCC
Confidence 34566788899999998887 88999999997532111 122222221111233332 347999999999
Q ss_pred eEEEEeCCcccC----CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCC--CceeeeeccccccCceEEE
Q 017601 218 QLTIWDLRMKEN----GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPR--RWSALSRWVHCSKYEITGL 289 (369)
Q Consensus 218 ~v~iwD~~~~~~----~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~--~~~~~~~~~~h~~~~v~~l 289 (369)
+|.+||+..... ..+...+.+| ...|..++|+|.. +|++.+.|+.+.|||+| +.++.+...+| ..+|.++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecC-CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeEE
Confidence 999999986533 1233446666 7899999999988 99999999999999999 56667788899 9999999
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCC-eeeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSN-WLGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~-~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|+|.++..||+||.|++|++||+|+ ..++.+|.+|.. ...+..+| ....|||++.|+.+.|||+..-
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99999999999999999999999998 678899999982 12333456 6788999999999999998753
No 82
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=1.2e-22 Score=170.84 Aligned_cols=204 Identities=15% Similarity=0.125 Sum_probs=167.2
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
.+....|+.-|.+++|+.|. ..|.+++...-+++||++.... ....+..|. +++..+-|... +..|
T Consensus 93 elhsf~hkhivk~~af~~ds----~~lltgg~ekllrvfdln~p~A----pp~E~~ght-----g~Ir~v~wc~e-D~~i 158 (334)
T KOG0278|consen 93 ELHSFEHKHIVKAVAFSQDS----NYLLTGGQEKLLRVFDLNRPKA----PPKEISGHT-----GGIRTVLWCHE-DKCI 158 (334)
T ss_pred hhhhhhhhheeeeEEecccc----hhhhccchHHHhhhhhccCCCC----CchhhcCCC-----CcceeEEEecc-CceE
Confidence 34456899999999999984 6788888888899999875421 112233333 34556778774 4566
Q ss_pred EEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 165 AVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
+++ .+|++||+||.. +.++++....++.++...+ ++.+++.+..+.|++||..+- ..++.+..+ .
T Consensus 159 LSS-add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-------dG~ilTia~gssV~Fwdaksf---~~lKs~k~P--~ 225 (334)
T KOG0278|consen 159 LSS-ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-------DGRILTIAYGSSVKFWDAKSF---GLLKSYKMP--C 225 (334)
T ss_pred Eee-ccCCceEEEEeccCcEEEEEecCCCCcceeecc-------CCCEEEEecCceeEEeccccc---cceeeccCc--c
Confidence 776 899999999964 6677776666667777665 579999999999999999987 788888877 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
.|.+.+.+|+. .+++|++|..++.||..+++.+..+ ++| -++|.+|.|+| ||...++||.||+||+|....++
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECC-CCceeeccCCCceEEEEEecCCC
Confidence 89999999999 9999999999999999999999886 899 99999999999 99999999999999999987643
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=2.8e-21 Score=183.91 Aligned_cols=236 Identities=14% Similarity=0.106 Sum_probs=181.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
+-+-+..|-|. ...+..+.+.|.+-++|+..... -...+.|+. .+-.++.+|++ ..++++ |.|+
T Consensus 413 ~y~l~~~Fvpg----d~~Iv~G~k~Gel~vfdlaS~~l-----~Eti~AHdg-----aIWsi~~~pD~-~g~vT~-saDk 476 (888)
T KOG0306|consen 413 GYILASKFVPG----DRYIVLGTKNGELQVFDLASASL-----VETIRAHDG-----AIWSISLSPDN-KGFVTG-SADK 476 (888)
T ss_pred ccEEEEEecCC----CceEEEeccCCceEEEEeehhhh-----hhhhhcccc-----ceeeeeecCCC-CceEEe-cCCc
Confidence 36778888885 36777788999999999985421 112233433 23369999955 456777 8999
Q ss_pred eEEEEeCC-------cceEEE-----EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 173 SIDVYDQD-------IHLRTL-----RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 173 ~i~lwd~~-------~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+|++||.. ...+.+ +++.-+..+-.+. ++||+..|+.+--|++|++|=+.+- +-.-.+-+|
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~---~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGH- 549 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS---VSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGH- 549 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE---EcCCCcEEEEEeccCeEEEEEecce---eeeeeeccc-
Confidence 99999852 111111 1222233333443 3465544444456999999999877 665566666
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
.-||.|+..|||+ .++|||.|++|+||-+.=|.+-..+-+| .+.|.+|.|-| ....+.++|.|+.|+-||-..-+++
T Consensus 550 kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 550 KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcc-cceeEEEecCcceEEeechhhhhhh
Confidence 6899999999999 9999999999999999999999999999 99999999999 8889999999999999999999999
Q ss_pred EEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 320 FAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 320 ~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.+.||. ..+.+ .++|.+++|+|.|.+|++|...
T Consensus 628 q~L~~H~--~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 628 QKLDGHH--SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred eeeccch--heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 9999987 44333 5699999999999999999754
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=3.8e-21 Score=190.00 Aligned_cols=250 Identities=17% Similarity=0.167 Sum_probs=184.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-CCCcc------------ccccccCCCCCCCCCCeeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-KDVDR------------LTYSVLPQDCGVGEGSWSGL 154 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~~l 154 (369)
...|.+.|+|++|++|+ ..+|+++++..|.+|...... ...-+ ....+..|+ ..+..+
T Consensus 65 m~~h~~sv~CVR~S~dG----~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv 135 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDG----SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDV 135 (942)
T ss_pred eccccCceeEEEECCCC----CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----Ccccee
Confidence 45799999999999984 899999999999999988411 11100 011122333 335689
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+|+| ++.++|++ |.|++|.||+.... ++.++. |...+.-+. ++|-|.+|++-++|++|+||++..- +.
T Consensus 136 ~Wsp-~~~~lvS~-s~DnsViiwn~~tF~~~~vl~~--H~s~VKGvs---~DP~Gky~ASqsdDrtikvwrt~dw---~i 205 (942)
T KOG0973|consen 136 NWSP-DDSLLVSV-SLDNSVIIWNAKTFELLKVLRG--HQSLVKGVS---WDPIGKYFASQSDDRTLKVWRTSDW---GI 205 (942)
T ss_pred ccCC-CccEEEEe-cccceEEEEccccceeeeeeec--ccccccceE---ECCccCeeeeecCCceEEEEEcccc---ee
Confidence 9999 66788988 99999999997654 333322 333222222 3456788999999999999997654 45
Q ss_pred eeeeeccC-----CCcEEEEEECCCC-cEEEEeC----CCcEEEEeCCCceeeeeccccccCceEEEEEcCC----C---
Q 017601 233 LHRICGSV-----GDILYAVCSSSTG-NIAVAGA----DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI----D--- 295 (369)
Q Consensus 233 ~~~~~~~~-----~~~v~~v~~sp~g-~lasgs~----D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~----d--- 295 (369)
.+.+..+. ...++-+.||||| +|+++.. -.++.|.+-.+++.-..|.|| ..++..++|+|. .
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhcccccc
Confidence 55554321 3457889999999 8888643 347899998889999999999 899999999984 1
Q ss_pred -----CC----EEEEEECCCeEEEEECcCCceeEEEE---cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 296 -----SN----YIYVQGVDYEVFCGQWRESSKVFAFR---GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 296 -----~~----~l~s~s~D~~i~vwd~~~~~~~~~~~---g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
++ .+|+||.|++|-||.....++++... .++ ...+..++||-.|+.+|.||+|.+..++.++
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S-I~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS-IVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc-eeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 68899999999999998777665542 222 3456668899999999999999999997653
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=4.6e-21 Score=172.29 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=187.5
Q ss_pred CCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCC
Q 017601 68 GKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVG 147 (369)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (369)
|++...+..+.+..+ ....+.||...|+++.|+++. ..+.+++.+-.+++|...... ......+|.
T Consensus 238 G~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~----~~v~~aSad~~i~vws~~~~s-----~~~~~~~h~---- 303 (506)
T KOG0289|consen 238 GEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDL----DTVITASADEIIRVWSVPLSS-----EPTSSRPHE---- 303 (506)
T ss_pred CCCCceEEEecchhh-hhhhccCcceEEEEEEeccch----hheeecCCcceEEeecccccc-----Ccccccccc----
Confidence 444333333333332 333477999999999999984 677788888899999987552 122334443
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeC-Cc--ceeeeccCCCCCCCCcEEEEEcCCeEEEEeC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWY-PS--SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~ 224 (369)
+.+.++..+|.++ +++++ +.|+++...|........ ...+ .. .+.... |-|||..|.+++.|+.|+|||+
T Consensus 304 -~~V~~ls~h~tge-YllsA-s~d~~w~Fsd~~~g~~lt-~vs~~~s~v~~ts~~---fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 304 -EPVTGLSLHPTGE-YLLSA-SNDGTWAFSDISSGSQLT-VVSDETSDVEYTSAA---FHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred -ccceeeeeccCCc-EEEEe-cCCceEEEEEccCCcEEE-EEeeccccceeEEee---EcCCceEEeccCCCceEEEEEc
Confidence 3456899999655 66777 899999999875322111 1111 11 122222 3367777777889999999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
+.+ ..+..|.+| .++|.+++|+.+| +||++.+|+.|++||+|+.+...++......+|.++.|.+ .|.+|+.+|
T Consensus 377 ks~---~~~a~Fpgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g 451 (506)
T KOG0289|consen 377 KSQ---TNVAKFPGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAG 451 (506)
T ss_pred CCc---cccccCCCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeec
Confidence 988 677888887 8999999999999 9999999999999999998888887755346899999999 999999999
Q ss_pred CCCeEEEEECcC--CceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 304 VDYEVFCGQWRE--SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 304 ~D~~i~vwd~~~--~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.|=+|++++-.+ -.++..+..|+.. .++..-....+++++|.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888888887443 3445555444411 22333336789999999999988754
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=8.7e-22 Score=185.91 Aligned_cols=239 Identities=12% Similarity=0.149 Sum_probs=180.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCee-EEEECCCCceeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWS-GLCFSPSQWSMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~p~~~~~~a 165 (369)
++-+|...|..++..+. ..+++++.+|++.+|+-... .-... ..+..+ ++-+. .+++-+.+...+.
T Consensus 9 ~l~gH~~DVr~v~~~~~-----~~i~s~sRd~t~~vw~~~~~-~~l~~--~~~~~~-----~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDG-----VCIISGSRDGTVKVWAKKGK-QYLET--HAFEGP-----KGFIANSICYAESDKGRLV 75 (745)
T ss_pred EeccCccchheeEecCC-----eEEeecCCCCceeeeeccCc-ccccc--eecccC-----cceeeccceeccccCcceE
Confidence 35689999999998764 57899999999999986422 10110 011111 11122 2667665556688
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|.+|.+|......-......|...+..+.. +. +..++++|.|.++++|-.. ++...+.+| +..|+
T Consensus 76 ~g-~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~---~~-~~~~iSgSWD~TakvW~~~-----~l~~~l~gH-~asVW 144 (745)
T KOG0301|consen 76 VG-GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSI---GE-DGTLISGSWDSTAKVWRIG-----ELVYSLQGH-TASVW 144 (745)
T ss_pred ee-cccceEEEEecCCCCchhhhhccccceeeeec---CC-cCceEecccccceEEecch-----hhhcccCCc-chhee
Confidence 87 99999999987643322223335555555542 12 3469999999999999654 566667877 79999
Q ss_pred EEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC
Q 017601 246 AVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD 325 (369)
Q Consensus 246 ~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~ 325 (369)
++++-|++.++|||.|++||+|.- ++.+.+|.+| .+.|+++++-| + ..++|++.||.|++||+ +++++..+.||
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~-~-~~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLD-D-SHFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEec-C-CCeEeecCCceEEEEec-cCceeeeeecc
Confidence 999999999999999999999974 7889999999 99999999987 4 46789999999999999 78899999999
Q ss_pred CCeeeeeE-cCCCCEEEEEeCCCcEEEEECC
Q 017601 326 SNWLGFSK-CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 326 ~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+++.-... ..++..|+|+++|++++||+..
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 96543333 4578899999999999999876
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=176.94 Aligned_cols=236 Identities=14% Similarity=0.098 Sum_probs=175.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+--+.|+++.|.+++ ..+.+.+.++++++|+++... ....+.+|.. -++++.|... ...++++
T Consensus 215 LaGs~g~it~~d~d~~~----~~~iAas~d~~~r~Wnvd~~r-----~~~TLsGHtd-----kVt~ak~~~~-~~~vVsg 279 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDN----KHVIAASNDKNLRLWNVDSLR-----LRHTLSGHTD-----KVTAAKFKLS-HSRVVSG 279 (459)
T ss_pred hhccCCCcceeeecCCC----ceEEeecCCCceeeeeccchh-----hhhhhccccc-----ceeeehhhcc-ccceeec
Confidence 55677889999999874 444455678899999998541 1122333433 2457778763 3345555
Q ss_pred ecccceEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.|.+|++||+.+. .+++.. ...++.+.+ ....++++-.|++|++||.|+. .+......+ +.|+
T Consensus 280 -s~DRtiK~WDl~k~~C~kt~l~---~S~cnDI~~-----~~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~g--g~vt 345 (459)
T KOG0288|consen 280 -SADRTIKLWDLQKAYCSKTVLP---GSQCNDIVC-----SISDVISGHFDKKVRFWDIRSA---DKTRSVPLG--GRVT 345 (459)
T ss_pred -cccchhhhhhhhhhheeccccc---cccccceEe-----cceeeeecccccceEEEeccCC---ceeeEeecC--ccee
Confidence 99999999998752 222211 112222221 0234555667999999999998 788888776 8999
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc---ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC---SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h---~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++..++++ .|.+.+.|.++++.|+|+.+..+++..- .....+.+.||| ++.|+++||.||.|+||++.++++.+.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEE
Confidence 99999999 8888899999999999998887776532 023489999999 999999999999999999999999988
Q ss_pred EEcCC-C--eeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 322 FRGDS-N--WLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 322 ~~g~~-~--~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
+.... + ...+..++.|..|++++.++.+.+|.
T Consensus 425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 86532 2 34455577899999999999999993
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.1e-20 Score=163.76 Aligned_cols=240 Identities=18% Similarity=0.165 Sum_probs=178.9
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAA 165 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a 165 (369)
....|.+.|.++|.+. ..+||++.|-+|++||+....+ + ..+..| .+.++++.|.+... ..+.
T Consensus 38 ~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~q-l----g~ll~H-----agsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQ-L----GILLSH-----AGSITALKFYPPLSKSHLL 101 (362)
T ss_pred cccccccceeEEEecc------eeEeccCCCCcEEEEeccchhh-h----cceecc-----ccceEEEEecCCcchhhee
Confidence 4568999999999964 5999999999999999986521 1 111112 34577899988432 3677
Q ss_pred EEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 166 VARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+| +.||.|.+|+.+. .+.+++. |...++++..+| .+..-++++.|+.+++||+-++ +........ ..
T Consensus 102 S~-sdDG~i~iw~~~~W~~~~slK~--H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~G---r~a~v~~L~--~~ 170 (362)
T KOG0294|consen 102 SG-SDDGHIIIWRVGSWELLKSLKA--HKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRG---RVAFVLNLK--NK 170 (362)
T ss_pred ee-cCCCcEEEEEcCCeEEeeeecc--cccccceeEecC---CCceEEEEcCCceeeeehhhcC---ccceeeccC--Cc
Confidence 77 9999999999874 4444433 444588887666 3456778999999999999887 333333322 33
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
...+.|+|.| +++.++.++ |-+|.+.+......+... ..+.++.|- ++..|++|+.|+.|++||.....+...|
T Consensus 171 at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~--~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP--KRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred ceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc--ccceeeeec--CCceEEEecCCceEEEeccCCCccceee
Confidence 4559999999 888887654 889999887776666543 456666664 6789999999999999999999999999
Q ss_pred EcCCC-eeeeeE--cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 323 RGDSN-WLGFSK--CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 323 ~g~~~-~~~~~~--~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+|.+ ...+.. .+++.+|+|+|.||.|+|||+....
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 99983 233332 3478899999999999999998763
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=1.9e-21 Score=183.71 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=178.6
Q ss_pred cccCCccceeeE-EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 86 LNRCPHRSEVQS-IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 86 ~~~~~H~~~V~~-l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
....+|.+-|.. ++|.+- ..-++..+..|.++.+|..... ...+.+.+|.. .+++++... ...+
T Consensus 51 ~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~-----~P~~~LkgH~s-----nVC~ls~~~--~~~~ 115 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQA-----EPLYTLKGHKS-----NVCSLSIGE--DGTL 115 (745)
T ss_pred eecccCcceeeccceeccc---cCcceEeecccceEEEEecCCC-----Cchhhhhcccc-----ceeeeecCC--cCce
Confidence 335678888887 898762 1357888889999999998755 22345555543 355666544 3346
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+++ |+|.++++|-.+.....+.. |+..+-.+...+ .+.+++++.|.+|++|.- + +.+++|.+| .+.|
T Consensus 116 iSg-SWD~TakvW~~~~l~~~l~g--H~asVWAv~~l~----e~~~vTgsaDKtIklWk~--~---~~l~tf~gH-tD~V 182 (745)
T KOG0301|consen 116 ISG-SWDSTAKVWRIGELVYSLQG--HTASVWAVASLP----ENTYVTGSADKTIKLWKG--G---TLLKTFSGH-TDCV 182 (745)
T ss_pred Eec-ccccceEEecchhhhcccCC--cchheeeeeecC----CCcEEeccCcceeeeccC--C---chhhhhccc-hhhe
Confidence 776 99999999988876665433 444443333322 359999999999999965 3 788899988 8999
Q ss_pred EEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
..+++-+++.+++++.||.|++||+ +++++.++.+| +.-|++++..+ +++.++|+|.|+++++|+.. ++.+.+.-
T Consensus 183 RgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~l 257 (745)
T KOG0301|consen 183 RGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH-TNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITL 257 (745)
T ss_pred eeeEEecCCCeEeecCCceEEEEec-cCceeeeeecc-ceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEec
Confidence 9999999989999999999999998 79999999999 99999999777 88999999999999999987 66666643
Q ss_pred C--CCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 325 D--SNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 325 ~--~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. +-| ......+ .-|++|+.||.||||...
T Consensus 258 PttsiW-sa~~L~N-gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 258 PTTSIW-SAKVLLN-GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CccceE-EEEEeeC-CCEEEeccCceEEEEEec
Confidence 3 322 2222224 446788899999999876
No 90
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.3e-23 Score=180.88 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=135.1
Q ss_pred CCCCCCCcEEEEEcCCeEEEEeCCcccCCceee-----eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee
Q 017601 202 SPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH-----RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 202 ~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~-----~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~ 275 (369)
.|+||+++|++++-||.|.+||..+++-.+-++ .+... ..+|.|++||.|. .+|+|+.||.|++|-+++|.++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMm-d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMM-DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeec-ccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 356789999999999999999998873222111 11111 4789999999999 9999999999999999999999
Q ss_pred eecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee-EcCCCCEEEEEeCCCcEEEEE
Q 017601 276 SRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS-KCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 276 ~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~-~~~d~~~l~sgs~dg~I~iWd 353 (369)
+.|. .| ...|+++.||. |+..++|+|.|.++|+--++.++++..|+||+.+.+-. ..+||..++++|.||+|++|+
T Consensus 299 RrFdrAH-tkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 299 RRFDRAH-TKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred HHhhhhh-ccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence 9998 77 99999999999 99999999999999999999999999999999554322 256999999999999999999
Q ss_pred CCCCcchhhhc
Q 017601 354 VVAKENEISAL 364 (369)
Q Consensus 354 ~~~~~~~~~~l 364 (369)
.++.++ +.++
T Consensus 377 ~KtteC-~~Tf 386 (508)
T KOG0275|consen 377 GKTTEC-LSTF 386 (508)
T ss_pred Ccchhh-hhhc
Confidence 999874 3444
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=9.3e-22 Score=169.00 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=161.3
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcce------------EEE---EeeeCCcceeeeccCCCCCCCCcEEEE
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL------------RTL---RTLWYPSSLNFVQNLSPVNGGPNMLAV 213 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~~~~~lla~ 213 (369)
+++..+.+.+....+++++ +.|+.|.+||+.... ..+ +...|...+....|.|++ .+.|.++
T Consensus 44 GsvNsL~id~tegrymlSG-gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D--tGmFtss 120 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSG-GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID--TGMFTSS 120 (397)
T ss_pred CccceeeeccccceEEeec-CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec--Cceeecc
Confidence 4466788888777777777 899999999974211 101 111244567777777754 4788889
Q ss_pred EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEE
Q 017601 214 TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGL 289 (369)
Q Consensus 214 s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l 289 (369)
+-|.++++||..+. +....|+-+ +.||+-++||-. ++|+|..|-.|++-|+.+|...+++.|| .+.|.+|
T Consensus 121 SFDhtlKVWDtnTl---Q~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV 194 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTL---QEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAV 194 (397)
T ss_pred cccceEEEeecccc---eeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEE
Confidence 99999999999988 777778877 899999999975 7888999999999999999999999999 9999999
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCC---------------CeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDS---------------NWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~---------------~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.|||...-.|++||.|+.||+||++.. .|...+..|. ...+.....|+.++++.+.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 999966666899999999999999874 5555554443 011222234899999999999999999
Q ss_pred CCCCcchh
Q 017601 354 VVAKENEI 361 (369)
Q Consensus 354 ~~~~~~~~ 361 (369)
...|++.+
T Consensus 275 ~~~G~ntl 282 (397)
T KOG4283|consen 275 MESGRNTL 282 (397)
T ss_pred cccCcccc
Confidence 99998644
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=5.3e-21 Score=171.93 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=181.7
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
-.|.++...|. ...+.++..+.++.++|..... ....+.+|.. -++.+.|+|. ...++++ +.|.
T Consensus 220 pgi~ald~~~s----~~~ilTGG~d~~av~~d~~s~q-----~l~~~~Gh~k-----ki~~v~~~~~-~~~v~~a-Sad~ 283 (506)
T KOG0289|consen 220 PGITALDIIPS----SSKILTGGEDKTAVLFDKPSNQ-----ILATLKGHTK-----KITSVKFHKD-LDTVITA-SADE 283 (506)
T ss_pred CCeeEEeecCC----CCcceecCCCCceEEEecchhh-----hhhhccCcce-----EEEEEEeccc-hhheeec-CCcc
Confidence 45677777664 2577888888889998877441 1112233322 2557999994 4456666 8999
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-CCCcEEEEEECC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-VGDILYAVCSSS 251 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 251 (369)
.|++|..+..........|...+.++..++ .+.+|++++.|++..+.|++++ .++...... ..-.+++.+|+|
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g---~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSG---SQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred eEEeeccccccCccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCC---cEEEEEeeccccceeEEeeEcC
Confidence 999998764332222333556677777554 4679999999999999999998 666555442 135689999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC--e
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN--W 328 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~--~ 328 (369)
|| .|++|..|+.|++||+.++..+..|.+| .++|..++|+. +|.+|++++.|+.|++||++..+...+|.-... .
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-TGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEV 435 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCCC-CCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccc
Confidence 99 9999999999999999999999999999 99999999999 999999999999999999999887777755442 1
Q ss_pred eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 329 LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 329 ~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..+..-..|.+|+.++.|=.|++++-.++
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICKKKTK 464 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEecccc
Confidence 22333347899999988888877774443
No 93
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-22 Score=201.17 Aligned_cols=258 Identities=17% Similarity=0.190 Sum_probs=195.5
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.-...-+.|+|.+-+....-+||.+-.+|+|.+|+...-.. .....+-.+ ...+++.+.+|.|++..++++|+| +
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~---~~~~~~la~-~~~h~G~V~gLDfN~~q~nlLASG-a 136 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA---NASEEVLAT-KSKHTGPVLGLDFNPFQGNLLASG-A 136 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhcc---CcchHHHhh-hcccCCceeeeeccccCCceeecc-C
Confidence 33466789999987543345899999999999999875311 111111111 122345678999999888899998 8
Q ss_pred ccceEEEEeCCcceEEEEee--eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILYA 246 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~ 246 (369)
.|+.|.|||+.+....+... ..+..|.++.|.. .....|++++.+|++.|||+|.. +++-.+..+. ...+..
T Consensus 137 ~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCCCCCCcccceEeccch--hhhHHhhccCCCCCceeccccCC---CcccccccCCCccceee
Confidence 99999999998755554431 2345566666532 11234556778899999999987 6666665441 245889
Q ss_pred EEECCCC--cEEEEeCCC---cEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE
Q 017601 247 VCSSSTG--NIAVAGADR---TVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~---~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~ 320 (369)
++|+|++ .|++++.|. .|.+||+|. ..+++++.+| +..|.++.|++.|..+|+|++.|++|.+|+.++++.+.
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 9999999 788877765 689999998 6788899999 99999999999888999999999999999999999999
Q ss_pred EEEcCCCee-eeeEcC-CCCEEEEEeCCCcEEEEECCCCc
Q 017601 321 AFRGDSNWL-GFSKCS-NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 321 ~~~g~~~~~-~~~~~~-d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+....+|. .+..|+ +..+++..+-||.|.|+.+....
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 997766665 344477 77799999999999999987764
No 94
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=176.91 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=184.7
Q ss_pred EEEEEeCCeEE-EEEEeCCchhh-hcCCCccccccCcccccccccc---cCC-ccceeeEEEEeecCCCCceEEEEEecC
Q 017601 44 FVYIASGCHLY-KLQVMMDDWFV-SEGKDSLLIPEQTPVMDSSMLN---RCP-HRSEVQSIALAETDSSGYMVLGSVDSY 117 (369)
Q Consensus 44 ~~~~as~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~-H~~~V~~l~~s~~~~~~~~~las~d~~ 117 (369)
.+.+-.|.++. ++++.+++.-+ ..+.+....-++.+-++.+.-. +.+ -...|++++|++.+ +..++++ ..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg--~~iLvvs--g~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG--DQILVVS--GS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC--CeEEEEe--cC
Confidence 34555555543 46666655443 5455655555555444322111 222 34679999999974 2333344 34
Q ss_pred CcEEEEEecCCC--CCCccccccc-----cCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEE
Q 017601 118 GHLIVSKLDTSG--KDVDRLTYSV-----LPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLR 187 (369)
Q Consensus 118 g~v~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~ 187 (369)
....++|.+... +-+.+..|.. .+|. ..+++.+|+|.....+++| ++|++++|||+..... .+.
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi-----a~lt~g~whP~~k~~FlT~-s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI-----AELTCGCWHPDNKEEFLTC-SYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCce-----eeeeccccccCcccceEEe-cCCCcEEEEecCCchhheeEEe
Confidence 456666655321 0011112221 1221 1345789999999999999 9999999999874433 333
Q ss_pred eee-CC--cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee--ccCCCcEEEEEECCCC-cEEEEeCC
Q 017601 188 TLW-YP--SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC--GSVGDILYAVCSSSTG-NIAVAGAD 261 (369)
Q Consensus 188 ~~~-~~--~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~--~~~~~~v~~v~~sp~g-~lasgs~D 261 (369)
+.. .. ..+..+. +++|+..++++..||.|++||.+... ..+...+. |..+..|+||+||++| +|++-+.|
T Consensus 310 ~k~~~g~Rv~~tsC~---~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCA---WNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred eccCCCcccCceeee---cCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 221 11 2223333 34677788888899999999986431 12222222 2214589999999999 99999999
Q ss_pred CcEEEEeCCC-ceeeeeccccc-cCceEEEEEcCCCCCEEEEEE------CCCeEEEEECcCCceeEEEEcCCCeeeeeE
Q 017601 262 RTVTIYDPRR-WSALSRWVHCS-KYEITGLSFSSIDSNYIYVQG------VDYEVFCGQWRESSKVFAFRGDSNWLGFSK 333 (369)
Q Consensus 262 ~~v~vwD~~~-~~~~~~~~~h~-~~~v~~l~~sp~d~~~l~s~s------~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~ 333 (369)
++++|||+|+ .+++..+.+-. ..+-+.++||| +.++|++|. .-+++.++|..+-+.++.+.-.. ..+..
T Consensus 386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~--aSvv~ 462 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST--ASVVR 462 (641)
T ss_pred CceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCC--ceEEE
Confidence 9999999998 56777666531 35678999999 999999875 34679999998877776664333 33333
Q ss_pred cC---CCCEEEEEeCCCcEEEE
Q 017601 334 CS---NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 334 ~~---d~~~l~sgs~dg~I~iW 352 (369)
|. -=+.|+.|+.||+++++
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EeecchhhheeeecCCCceEEE
Confidence 32 33458888899999987
No 95
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=5.1e-21 Score=169.35 Aligned_cols=210 Identities=18% Similarity=0.140 Sum_probs=158.9
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
..++..+|+++=+.|+|||-. .-+|+++|+...|++|...++.-..+... +..|.. .+-+|+|||...++
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~---~g~LlsGDc~~~I~lw~~~~g~W~vd~~P--f~gH~~-----SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIK---TGRLLSGDCVKGIHLWEPSTGSWKVDQRP--FTGHTK-----SVEDLQWSPTEDGV 272 (440)
T ss_pred ceEEecccCccceeeeccccc---ccccccCccccceEeeeeccCceeecCcc--cccccc-----chhhhccCCccCce
Confidence 445567999999999999953 56899999999999999987532222211 122332 34479999999999
Q ss_pred EEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC
Q 017601 164 AAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
||+| |.|++|+|||+.. ....+....|...++.+.|.. .-..|+++++||+++|||+|+-+.++++..|+.| .
T Consensus 273 faSc-S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr---~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H-k 347 (440)
T KOG0302|consen 273 FASC-SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR---REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH-K 347 (440)
T ss_pred EEee-ecCceEEEEEecCCCccceeEeeccCCceeeEEccC---CcceeeecCCCceEEEEEhhhccCCCcceeEEec-c
Confidence 9999 9999999999852 233344455777888888643 2346777889999999999987666889999977 7
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce--------eee--------ecccc-ccCceEEEEEcCCCCCEEEEE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS--------ALS--------RWVHC-SKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~--------~~~--------~~~~h-~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+|++|.|+|.. .|++++.|..|.+||+.... ... -+.-| -+..+-.|.|+++.+.+|+|.
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsT 427 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVST 427 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEe
Confidence 999999999987 89999999999999985311 111 11223 024688899999889999999
Q ss_pred ECCCeE
Q 017601 303 GVDYEV 308 (369)
Q Consensus 303 s~D~~i 308 (369)
+.||.-
T Consensus 428 a~dGfn 433 (440)
T KOG0302|consen 428 AIDGFN 433 (440)
T ss_pred ccccee
Confidence 999843
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.9e-21 Score=173.49 Aligned_cols=278 Identities=14% Similarity=0.156 Sum_probs=192.5
Q ss_pred ccceeeeecCCccccCCCCCcc-----ccceeEEEecCCCceEEEEEEeCCe-----------EEEEEEeCCchhhhcCC
Q 017601 6 AKSLRKAEVPLSLIENPSPGNI-----QCTRLALHVNEDGCSCFVYIASGCH-----------LYKLQVMMDDWFVSEGK 69 (369)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~as~~~-----------~~~~~~~~~~~~~~~~~ 69 (369)
-|..|.-+.||.+.+.-+...+ +.+.+|+ +.+.++-+|.+.+.. ||.+.+.-++.++.+|.
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aV---t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAV---TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEE---ecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 3555666666666443211111 1223333 233444455554433 35566666788887766
Q ss_pred -CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCC
Q 017601 70 -DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGE 148 (369)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (369)
+|....++ ...+.....+..|+..|..+.|+|+. ...++++|+++.+.+||+.+.. . .+.+..|..-
T Consensus 88 ~sG~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d---~t~l~s~sDd~v~k~~d~s~a~----v-~~~l~~htDY--- 155 (487)
T KOG0310|consen 88 ESGHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQD---NTMLVSGSDDKVVKYWDLSTAY----V-QAELSGHTDY--- 155 (487)
T ss_pred CcCcEEEec-cccHHHHHHHhhccCceeEEEecccC---CeEEEecCCCceEEEEEcCCcE----E-EEEecCCcce---
Confidence 45555555 22222333467999999999999984 6899999999999999998663 1 2334444433
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
+.+.+|+|.++.++++| |+|+.|++||..........+.|...+..+-..| ++.+++.+..+.|++||+-++.
T Consensus 156 --VR~g~~~~~~~hivvtG-sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp----sgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 156 --VRCGDISPANDHIVVTG-SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP----SGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred --eEeeccccCCCeEEEec-CCCceEEEEEeccCCceeEEecCCCceeeEEEcC----CCCEEEEcCCCeEEEEEecCCc
Confidence 45899999888888887 9999999999865433333444444343333222 3455555566789999998762
Q ss_pred CCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 229 NGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 229 ~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+.+..+. |+ ..|+|+++..++ .|++||-|+.|++||+.+.+.++.|.- .++|.+++.+| +++.++.|..+|
T Consensus 229 --qll~~~~~H~--KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~-dd~t~viGmsnG 301 (487)
T KOG0310|consen 229 --QLLTSMFNHN--KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSP-DDQTVVIGMSNG 301 (487)
T ss_pred --eehhhhhccc--ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecC-CCceEEEecccc
Confidence 3444433 55 999999999999 999999999999999999999999885 48899999999 999999999999
Q ss_pred eEEEEE
Q 017601 307 EVFCGQ 312 (369)
Q Consensus 307 ~i~vwd 312 (369)
.+.+=+
T Consensus 302 lv~~rr 307 (487)
T KOG0310|consen 302 LVSIRR 307 (487)
T ss_pred eeeeeh
Confidence 887653
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=9.6e-22 Score=187.62 Aligned_cols=203 Identities=15% Similarity=0.087 Sum_probs=155.0
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEE--EEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRT--LRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
.|.|+....++||++ +..|.|.+||+.+..+. +..+ .|...++.+.++++.| ..|+++|.||+|++||+|..
T Consensus 92 DVkW~~~~~NlIAT~-s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep--~iliSGSQDg~vK~~DlR~~-- 166 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATC-STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP--NILISGSQDGTVKCWDLRSK-- 166 (839)
T ss_pred hcccccchhhhheee-cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc--cEEEecCCCceEEEEeeecc--
Confidence 588887788899999 99999999999864332 2122 2555666666665544 68999999999999999988
Q ss_pred CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 230 GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 230 ~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
+...++... ...|..|.|+|.- .++++.+.|.+++||+|. .++...+..| .++|.++.|+| ++.+|||||.|+
T Consensus 167 -~S~~t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhP-nr~~lATGGRDK 242 (839)
T KOG0269|consen 167 -KSKSTFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHP-NREWLATGGRDK 242 (839)
T ss_pred -ccccccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc-cCceEEEeecC-CCceeeecCCCc
Confidence 566666654 5889999999976 999999999999999998 4667889999 99999999999 999999999999
Q ss_pred eEEEEECcCCceeEEEEcCC--CeeeeeEcC-CCCEEEEEeC--CCcEEEEECCCCcchhhhc
Q 017601 307 EVFCGQWRESSKVFAFRGDS--NWLGFSKCS-NRDVLGGWSD--SGSIFVADVVAKENEISAL 364 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~--~~~~~~~~~-d~~~l~sgs~--dg~I~iWd~~~~~~~~~~l 364 (369)
.|+|||+..++....+.-++ ....+..-| ....||+++. |-.|+|||++..--+...+
T Consensus 243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 99999998755433333222 111122233 3466887775 7899999998764433333
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=8.2e-21 Score=164.70 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=185.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|++.|+.++-... ..++++++.+-+..+|.+..+. +.....+|. +.+.+++|++ ...+++++
T Consensus 144 ~~GHkDGiW~Vaa~~t----qpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~-----GSVNsikfh~-s~~L~lTa 208 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADST----QPICGTASADHTARIWSLESGA-----CLATYTGHT-----GSVNSIKFHN-SGLLLLTA 208 (481)
T ss_pred hcccccceeeehhhcC----CcceeecccccceeEEeecccc-----ceeeecccc-----cceeeEEecc-ccceEEEc
Confidence 5799999999987553 4589999999999999998762 222233443 3466899999 44566776
Q ss_pred ecccceEEEEe------CCcce-----------------------------EEE-----EeeeCCcceeeeccCCCCCCC
Q 017601 168 RSFSKSIDVYD------QDIHL-----------------------------RTL-----RTLWYPSSLNFVQNLSPVNGG 207 (369)
Q Consensus 168 ~s~d~~i~lwd------~~~~~-----------------------------~~~-----~~~~~~~~v~~~~~~~~~~~~ 207 (369)
|.|++-.||. +.+.. .++ +...|...+....|.. .+
T Consensus 209 -SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg 284 (481)
T KOG0300|consen 209 -SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GG 284 (481)
T ss_pred -cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Cc
Confidence 8999999995 11100 001 1111223333334433 36
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYE 285 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~ 285 (369)
..+++++.|.+..+||+.++ ..++.+.+| ....+-++-+|.. ++++.+.|.+.++||.|. -..+..|+|| .+.
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGH-d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH-tdt 359 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETG---EVVNILTGH-DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH-TDT 359 (481)
T ss_pred ceeeeeeccccceeeeeccC---ceeccccCc-chhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc-ccc
Confidence 78999999999999999999 788888887 6788889999999 999999999999999985 3456789999 999
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|+++.|.- + ..++|+|.|.+|++||+++ ...+.+++-.+....+..+..+.+|+.--+++.|++||+...+
T Consensus 360 VTS~vF~~-d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 360 VTSVVFNT-D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eeEEEEec-C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 99999987 4 5688999999999999987 4577888776644444445567788888888999999996543
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.4e-19 Score=150.40 Aligned_cols=254 Identities=15% Similarity=0.122 Sum_probs=180.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccC-----CCCCCCCCCeeEEEECCCCce
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLP-----QDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.......|.+++|.|.+ .+-|.++...++++-.+..-......+....+| ....+..+.+.+.+|+| .+.
T Consensus 28 ~l~dsqairav~fhp~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~ge 102 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGE 102 (350)
T ss_pred EecchhheeeEEecCCC----ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccC
Confidence 34456789999999974 577777777788876553221111111111122 12345567788999999 556
Q ss_pred eEEEEecccceEEEEeCCc--ceE---EEEeeeC---CcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCce
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLR---TLRTLWY---PSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~---~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~ 232 (369)
++|++ |.|++|++.-.+. ... .+...-| ...+.|+... ..++.+++.+ .|..|.+=|-.++ +.
T Consensus 103 liatg-sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~---~s~~~il~s~gagdc~iy~tdc~~g---~~ 175 (350)
T KOG0641|consen 103 LIATG-SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP---ESGGAILASAGAGDCKIYITDCGRG---QG 175 (350)
T ss_pred eEEec-CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC---CcCceEEEecCCCcceEEEeecCCC---Cc
Confidence 88888 9999999984421 111 1111112 2345565532 2344555543 4667777777777 88
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEECC
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+.+.+| .+.|.++ ++-+| .+++|+.|++|++||+|-..++.++... ....|.+++..| .|++|++|-.|
T Consensus 176 ~~a~sgh-tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d 252 (350)
T KOG0641|consen 176 FHALSGH-TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD 252 (350)
T ss_pred ceeecCC-cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC
Confidence 8889888 7888887 55578 9999999999999999998888876521 125799999999 99999999999
Q ss_pred CeEEEEECcCCceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 306 YEVFCGQWRESSKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....++|++.++.++.|..|+. ...+..+|...++.++|.|..|++=|+..
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 9999999999999999988872 12334477888999999999999999853
No 100
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.5e-20 Score=156.72 Aligned_cols=246 Identities=15% Similarity=0.108 Sum_probs=176.1
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+-+.+|+..++-|.|..++ .+|-++.++-..-+|-...+.. .-...+|.. .+-+++.+. +...++
T Consensus 4 i~l~GHERplTqiKyN~eG----DLlFscaKD~~~~vw~s~nGer-----lGty~GHtG-----avW~~Did~-~s~~li 68 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREG----DLLFSCAKDSTPTVWYSLNGER-----LGTYDGHTG-----AVWCCDIDW-DSKHLI 68 (327)
T ss_pred cccccCccccceEEecCCC----cEEEEecCCCCceEEEecCCce-----eeeecCCCc-----eEEEEEecC-Ccceee
Confidence 4578999999999999874 6888887777777776643310 111223322 233577777 445677
Q ss_pred EEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-----CCeEEEEeCCccc----CCceee
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-----GCQLTIWDLRMKE----NGGCLH 234 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-----d~~v~iwD~~~~~----~~~~~~ 234 (369)
++ +.|.+++|||+. +.+..+........+.|. .+++.++++.+ .+.|.++|++..+ ...+..
T Consensus 69 TG-SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~------~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 69 TG-SADQTAKLWDVETGKQLATWKTNSPVKRVDFS------FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred ec-cccceeEEEEcCCCcEEEEeecCCeeEEEeec------cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 77 999999999985 455444433222333333 35666666664 3689999999432 235566
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
.+..+ ...++.+-|+|-+ .|++|.+||.|..||+++++ .+..-..| ...|+.+.|+| |..+++++|.|.+-++||
T Consensus 142 kI~t~-~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h-~~~Ind~q~s~-d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 142 KIPTP-DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH-SSKINDLQFSR-DRTYFITGSKDTTAKLVD 218 (327)
T ss_pred EecCC-ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh-ccccccccccC-CcceEEecccCccceeee
Confidence 66555 5889999999999 99999999999999999974 45566788 88999999999 999999999999999999
Q ss_pred CcCCce-------------------------------------------------------eEEEEcCC-CeeeeeEcCC
Q 017601 313 WRESSK-------------------------------------------------------VFAFRGDS-NWLGFSKCSN 336 (369)
Q Consensus 313 ~~~~~~-------------------------------------------------------~~~~~g~~-~~~~~~~~~d 336 (369)
..+-++ +...+||- ....+...|+
T Consensus 219 ~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 219 VRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 876322 22233332 1123344569
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 017601 337 RDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 337 ~~~l~sgs~dg~I~iWd~~~ 356 (369)
|...+||++||.|++.-+..
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 99999999999999986643
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.8e-21 Score=161.31 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=174.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~ 167 (369)
..|++-|.++...-- +++||++++|+.|+||.+..... ......+.+|..+ +.-++| +|.-+.+||+|
T Consensus 8 t~H~D~IHda~lDyy----gkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GP-----Vwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYY----GKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGP-----VWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhHhhhhhh----cceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCC-----eeEEeecccccCcEeeEe
Confidence 468888887776443 47999999999999999986632 0111234444433 335666 67677889998
Q ss_pred ecccceEEEEeCCcce--EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHL--RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v 244 (369)
++|+.|-||.-.... +......|..+++.+.+.|..- +-.|+.++.||.|.|.+.+.. .+-....+ ..| .-.|
T Consensus 77 -sYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH-~~Gv 152 (299)
T KOG1332|consen 77 -SYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAH-EIGV 152 (299)
T ss_pred -ecCceEEEEecCCCchhhhhhhhhhcccceeeccccccc-ceEEEEeeCCCcEEEEEEcCC-CCccchhhhhcc-cccc
Confidence 999999999764321 1111122556677777665433 334555778999999998865 11222222 223 4789
Q ss_pred EEEEECCCC---------------cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCC---CCEEEEEEC
Q 017601 245 YAVCSSSTG---------------NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSID---SNYIYVQGV 304 (369)
Q Consensus 245 ~~v~~sp~g---------------~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d---~~~l~s~s~ 304 (369)
++++|.|-. +|++|+.|+.|+||+..+ +....+|.+| .+-|+.++|.|.. ..+|||+|.
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecC
Confidence 999998862 499999999999999877 4556679999 9999999999943 257999999
Q ss_pred CCeEEEEECcC------CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 305 DYEVFCGQWRE------SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 305 D~~i~vwd~~~------~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|+++.||-.+. ..++..|.... -.+..+..|.+|+.++.|+.|.+|.-..
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~f~~~~--w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEEFPDVV--WRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcEEEEEecCccCcccccccccCCcce--EEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999998764 23344442222 3344466899999999999999996543
No 102
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=169.39 Aligned_cols=247 Identities=13% Similarity=0.020 Sum_probs=175.7
Q ss_pred CceEEEEEecCCcEEEEEecCCCCCCccc-------cccccCCCCCCCCCCee----EEEECCCCceeEEEEecccceEE
Q 017601 107 GYMVLGSVDSYGHLIVSKLDTSGKDVDRL-------TYSVLPQDCGVGEGSWS----GLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 107 ~~~~las~d~~g~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
.+.++|-+..+-.|.|||++-...-.+.. ++............+++ .++|+..-.++||++ |.|++|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg-saD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG-SADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec-CCCceEE
Confidence 45677777777799999987542211110 00000000111112233 677887777788888 9999999
Q ss_pred EEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 176 VYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 176 lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
+||+. ++.+++. .+...+..+.++++.| ..||+++.|++|.|.|.|... ..-..++-. +.|-.++|.|..
T Consensus 270 lWD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~--~s~~~wk~~--g~VEkv~w~~~s 341 (463)
T KOG0270|consen 270 LWDVDTGKPKSSIT--HHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPS--NSGKEWKFD--GEVEKVAWDPHS 341 (463)
T ss_pred EEEcCCCCcceehh--hcCCceeEEEecCCCc--eEEEeccccceEEeeeccCcc--ccCceEEec--cceEEEEecCCC
Confidence 99986 4444443 3456677777777655 689999999999999999642 222334444 779999999998
Q ss_pred --cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC----
Q 017601 254 --NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS---- 326 (369)
Q Consensus 254 --~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~---- 326 (369)
.++++..||+|+-+|+|+ ++++.+++.| .++|.+|+++++.+.+++++|.|+.|++|++......... .|.
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~ 419 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLG 419 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-ccccccc
Confidence 888899999999999999 5999999999 9999999999988999999999999999999753321111 121
Q ss_pred CeeeeeEcC-CCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 327 NWLGFSKCS-NRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 327 ~~~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
+..++..++ ..-+++.|+..+.++|||+.+....+.++
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 112333344 45578888888899999999887766554
No 103
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=1.1e-19 Score=155.94 Aligned_cols=255 Identities=15% Similarity=0.120 Sum_probs=171.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEec----CC---cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDS----YG---HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~----~g---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
+..|.+||+.|+-+|-. ..+++++-. .| ..-+|.+..............-.+.....-+.+.++-|.|++
T Consensus 59 f~h~agEvw~las~P~d---~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFD---QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhcCCcceehhhcCCCC---CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 45788999999999963 567777532 11 346788765432211111111111111112246789999955
Q ss_pred ceeEEEEecccceEEEEeCCcceE---EEEeee---CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLR---TLRTLW---YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~---~~~~~~---~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~ 234 (369)
. .+|+- .|..|.+|+...... .+.... +...+..-.|.|. .++..+++..|++++.||+|+. ++..
T Consensus 136 ~-klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH--Hdgnqv~tt~d~tl~~~D~RT~---~~~~ 207 (370)
T KOG1007|consen 136 D-KLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH--HDGNQVATTSDSTLQFWDLRTM---KKNN 207 (370)
T ss_pred C-eeEEe--ccCceEEEEcccCcchheeecccccccccceecccccCCC--CccceEEEeCCCcEEEEEccch---hhhc
Confidence 5 44544 489999998763222 221110 1111111222221 3456667778899999999988 5555
Q ss_pred eeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.+...++..|..+.|+|+- .|++|+.|+.|++||.|+ ..++.++.+| ...|.+|.|+|...++++|+|.|..|.+|
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLS 286 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEE
Confidence 5543226889999999998 999999999999999997 6789999999 99999999999878899999999999999
Q ss_pred ECcCC-----------------------------ceeEEEEcCCCeeeeeE----cCCCCEEEEEeCCCcEEEEECCC
Q 017601 312 QWRES-----------------------------SKVFAFRGDSNWLGFSK----CSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 312 d~~~~-----------------------------~~~~~~~g~~~~~~~~~----~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....- ..+.+|..|. .++-. +.|..++||-|.||.+.|=.+..
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE--DSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE--DSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccc--cceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 76430 2334555565 33333 23899999999999999876643
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=1.8e-19 Score=155.54 Aligned_cols=245 Identities=14% Similarity=0.165 Sum_probs=177.2
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
+-.+.|.+|+|||.. ..++++++-+|+|++|+++..+..... ....+ ++.+.+++|+.++ ..++++ +
T Consensus 25 pP~DsIS~l~FSP~~---~~~~~A~SWD~tVR~wevq~~g~~~~k---a~~~~-----~~PvL~v~Wsddg-skVf~g-~ 91 (347)
T KOG0647|consen 25 PPEDSISALAFSPQA---DNLLAAGSWDGTVRIWEVQNSGQLVPK---AQQSH-----DGPVLDVCWSDDG-SKVFSG-G 91 (347)
T ss_pred CcccchheeEecccc---CceEEecccCCceEEEEEecCCcccch---hhhcc-----CCCeEEEEEccCC-ceEEee-c
Confidence 445889999999952 468888999999999999865322221 11112 2346689999855 667777 8
Q ss_pred ccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|+++++||+. .++..+.. |...+..+.+++..+ -..|+++|.|.+|+.||+|.. .++.++..+ +.+|++.
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~--Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~---~pv~t~~LP--eRvYa~D 163 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAA--HDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSS---NPVATLQLP--ERVYAAD 163 (347)
T ss_pred cCCceEEEEccCCCeeeeee--cccceeEEEEecCCC-cceeEecccccceeecccCCC---Ceeeeeecc--ceeeehh
Confidence 99999999986 34444433 333344444433222 347788999999999999988 899999888 8899885
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceee-eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC--ceeEEEEcC
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSAL-SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES--SKVFAFRGD 325 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~-~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~--~~~~~~~g~ 325 (369)
.-. ..++++..++.|.+|+++++... ......++..+.+|+..+ |....+-||..|++-+-.+..+ +.-++|+.|
T Consensus 164 v~~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 164 VLY-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred ccC-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 421 17788888999999999885433 333444467899999998 8888899999999999988775 666778877
Q ss_pred CC-------e---eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 326 SN-------W---LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 326 ~~-------~---~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+ . ..+...|.-..|++++.||++.+||-...
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 62 1 11222446678999999999999996543
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=2.3e-20 Score=170.51 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=182.5
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.++....|..-|..+.+|.. ...+.++.+ |.|.|||+.......+.....+. ..+.-+.++.+.|++ ..
T Consensus 411 rq~~tL~HGEvVcAvtIS~~----trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl-----~rdnyiRSckL~pdg-rt 479 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNP----TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCL-----NRDNYIRSCKLLPDG-RT 479 (705)
T ss_pred HhhhhhccCcEEEEEEecCC----cceeEecCC-CeEEEeeccCCCCCCcccccccc-----CcccceeeeEecCCC-ce
Confidence 34445678888888999876 356676654 78999999865332222111111 112225578999955 45
Q ss_pred EEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
++++ ++-.++.|||+......++........ .+.....++|....+++..||.|.|||++.. ..++.|++| .+.
T Consensus 480 LivG-GeastlsiWDLAapTprikaeltssap-aCyALa~spDakvcFsccsdGnI~vwDLhnq---~~VrqfqGh-tDG 553 (705)
T KOG0639|consen 480 LIVG-GEASTLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGH-TDG 553 (705)
T ss_pred EEec-cccceeeeeeccCCCcchhhhcCCcch-hhhhhhcCCccceeeeeccCCcEEEEEcccc---eeeecccCC-CCC
Confidence 6666 788999999986544333322111111 1122334577778888999999999999987 788999988 899
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceee----------------------------------------eeccccc
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL----------------------------------------SRWVHCS 282 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~----------------------------------------~~~~~h~ 282 (369)
+.||..++|| .|-+|+-|++|+.||+|.+..+ ..+.-|
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh- 632 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH- 632 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc-
Confidence 9999999999 9999999999999999853321 112335
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
...|.++.|.+ -|+.++|.+.|+.+..|-..-+..++..+..+...+...+.|.++|++||.|..-.||.+
T Consensus 633 eScVLSlKFa~-cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 633 ESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccEEEEEEecc-cCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 67899999999 999999999999999999888888777765553333333459999999999998888865
No 106
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=161.45 Aligned_cols=258 Identities=12% Similarity=0.098 Sum_probs=171.0
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEec------CCC--------CCCcccccc---------cc
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLD------TSG--------KDVDRLTYS---------VL 140 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~------~~~--------~~~~~~~~~---------~~ 140 (369)
..+++.+|.|.|++|.|++.+ .++++++.+++..||... ... ++.+..... ..
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~----~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD 257 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSG----LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSD 257 (481)
T ss_pred ceeeecccccceeeEEecccc----ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccC
Confidence 456688999999999999974 677777777777777632 100 000000000 00
Q ss_pred CCC--CCC-----CCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEE
Q 017601 141 PQD--CGV-----GEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNML 211 (369)
Q Consensus 141 ~~~--~~~-----~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll 211 (369)
+|. .+. ..+-+.++.|-. +...++++ |+|.+-.+||+.. .+..+ ..|...++.+..+| .-..++
T Consensus 258 ~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTa-SWDRTAnlwDVEtge~v~~L--tGHd~ELtHcstHp---tQrLVv 330 (481)
T KOG0300|consen 258 GHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTA-SWDRTANLWDVETGEVVNIL--TGHDSELTHCSTHP---TQRLVV 330 (481)
T ss_pred CceeeeeeeeeeccccceEehhhhc-Ccceeeee-eccccceeeeeccCceeccc--cCcchhccccccCC---cceEEE
Confidence 000 000 001133444554 44566777 9999999999864 33333 22444455444433 123455
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEE
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~ 290 (369)
+.+.|.++++||+|.. ...+..|++| ...|+++.|+-+..+++|+.|++|+|||+++ ..++.++.. ..+++.++
T Consensus 331 TsSrDtTFRLWDFRea--I~sV~VFQGH-tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~NRva 405 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREA--IQSVAVFQGH-TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPANRVA 405 (481)
T ss_pred EeccCceeEeccchhh--cceeeeeccc-ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec--CCccceeE
Confidence 6778999999999943 4778889988 8999999999888999999999999999999 456777774 47899999
Q ss_pred EcCCCCCEEEEEECCCeEEEEECcCCceeEE----EEcCCCeeeeeE-cCC--CCEEEEEeCCCcEEEEECCCCc
Q 017601 291 FSSIDSNYIYVQGVDYEVFCGQWRESSKVFA----FRGDSNWLGFSK-CSN--RDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 291 ~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~----~~g~~~~~~~~~-~~d--~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+. .+..++---....|++||++..++.+. -+||.+...... +-+ -.-|++++.|+.+.-|++.+..
T Consensus 406 vs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 406 VSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 998 666666666666899999987654333 257774322221 111 1348899999999999987653
No 107
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7.1e-20 Score=176.85 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 206 GGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
..+.||+++.|.|||||++... .|+..|.|. ..|+||+|+|-. ++++|+-|+.|+||++...+.+.... . .
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~---~CL~~F~Hn--dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l-~ 451 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRK---ECLKVFSHN--DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-L-R 451 (712)
T ss_pred cCCeeEeccccccEEeecCCCc---ceeeEEecC--CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-h-h
Confidence 4679999999999999999987 899999998 999999999988 99999999999999998766655444 3 5
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc---------CCCeeeeeEcC-CCCEEEEEeCCCcEEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG---------DSNWLGFSKCS-NRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g---------~~~~~~~~~~~-d~~~l~sgs~dg~I~iWd 353 (369)
+-|++++|+| ||++.+.|+.+|.+++++....++...+.- |.+..++..++ +.+.|+..|.|..|+|+|
T Consensus 452 ~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 452 DLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred hhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEe
Confidence 8899999999 999999999999999999988665544421 22456777666 556777888999999999
Q ss_pred CCCCcchhhhcccCCC
Q 017601 354 VVAKENEISALKGLVN 369 (369)
Q Consensus 354 ~~~~~~~~~~l~g~~~ 369 (369)
.++.+ .+..++|.-|
T Consensus 531 ~~~~~-lv~KfKG~~n 545 (712)
T KOG0283|consen 531 GRDKD-LVHKFKGFRN 545 (712)
T ss_pred ccchh-hhhhhccccc
Confidence 97654 4666777543
No 108
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=4.2e-19 Score=150.38 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=172.9
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+...+|.+.|--++|+|.. ..++++++.+.++++||...... ...+.. ..+.+ -+.|+|.+ ..++
T Consensus 58 ~~~~gh~~svdql~w~~~~---~d~~atas~dk~ir~wd~r~~k~-----~~~i~~-----~~eni-~i~wsp~g-~~~~ 122 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKH---PDLFATASGDKTIRIWDIRSGKC-----TARIET-----KGENI-NITWSPDG-EYIA 122 (313)
T ss_pred hcccCCCcchhhheeCCCC---CcceEEecCCceEEEEEeccCcE-----EEEeec-----cCcce-EEEEcCCC-CEEE
Confidence 4467899999999999874 56888888888999999975521 111110 11223 48999955 5667
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|..|...|..+... +...+....++-+.+. .++..++.....|+|.|-....- ++++.++.| ...-.
T Consensus 123 ~~-~kdD~it~id~r~~~~-~~~~~~~~e~ne~~w~---~~nd~Fflt~GlG~v~ILsypsL---kpv~si~AH-~snCi 193 (313)
T KOG1407|consen 123 VG-NKDDRITFIDARTYKI-VNEEQFKFEVNEISWN---NSNDLFFLTNGLGCVEILSYPSL---KPVQSIKAH-PSNCI 193 (313)
T ss_pred Ee-cCcccEEEEEecccce-eehhcccceeeeeeec---CCCCEEEEecCCceEEEEecccc---ccccccccC-CcceE
Confidence 76 7888899998753221 1122222222222221 23457777777899999988766 888888866 57788
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
||.|+|+| +||+|+.|-.+.+||+...-+++.+.-+ ..+|..|+||- ||++|||+|.|..|-|=++++|..+..+..
T Consensus 194 cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-dwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 194 CIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-DWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred EEEECCCCceEeeccccceeeccChhHhhhheeeccc-cCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEeec
Confidence 89999999 9999999999999999998899999999 99999999999 999999999999999999999988777754
Q ss_pred CCCeeeeeEcCCCCEEEEEeCC
Q 017601 325 DSNWLGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 325 ~~~~~~~~~~~d~~~l~sgs~d 346 (369)
...-..+..-|...+||=+..|
T Consensus 272 ~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 272 EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCCceeEEecCCCceeeEEecC
Confidence 3322455556666777755554
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.1e-20 Score=174.38 Aligned_cols=268 Identities=15% Similarity=0.156 Sum_probs=187.0
Q ss_pred hcCCCccccccCc-cccc----ccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccccc
Q 017601 66 SEGKDSLLIPEQT-PVMD----SSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVL 140 (369)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~----~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~ 140 (369)
..|.++.++-+.. +... .-......|.+.|++|++..++ ..+.|++.+-+|.+|+..... ......+.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~----~tlIS~SsDtTVK~W~~~~~~---~~c~stir 114 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG----KTLISASSDTTVKVWNAHKDN---TFCMSTIR 114 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC----CceEEecCCceEEEeecccCc---chhHhhhh
Confidence 4566666544433 2111 1133456899999999998763 688888899999999998653 12223344
Q ss_pred CCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc----eEEEEee-------eCCcceeeeccCCCCCCCCc
Q 017601 141 PQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH----LRTLRTL-------WYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 141 ~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~~~~ 209 (369)
.|+.- +.++++-..+..++|++ +.|+.|.|||+... +.++... .+...+-.++ .++.+..
T Consensus 115 ~H~DY-----Vkcla~~ak~~~lvaSg-GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA---~N~t~t~ 185 (735)
T KOG0308|consen 115 THKDY-----VKCLAYIAKNNELVASG-GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA---MNQTGTI 185 (735)
T ss_pred cccch-----heeeeecccCceeEEec-CCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee---cCCcceE
Confidence 44432 34788833355677777 99999999998632 2111111 0111221222 2233445
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITG 288 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~ 288 (369)
+++++..+-+++||.|++ +.+..+.+| +..|.++-.++|| ++++||.||+|++||+...+++.++..| +..|++
T Consensus 186 ivsGgtek~lr~wDprt~---~kimkLrGH-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH-~e~VWa 260 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTC---KKIMKLRGH-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH-KEGVWA 260 (735)
T ss_pred EEecCcccceEEeccccc---cceeeeecc-ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec-cCceEE
Confidence 666778899999999999 777788888 8999999999999 9999999999999999999999999999 889999
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+..+| +=.++++|+.|+.|..=|+++ .++...++.......+...-..+-+-.++.|+.|+-|..+
T Consensus 261 L~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 261 LQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EeeCC-CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999 999999999999999999998 4555555432210111111112223667788999999764
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=3e-19 Score=161.79 Aligned_cols=251 Identities=16% Similarity=0.206 Sum_probs=182.1
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC---Ccc---c--cc-cccCCCCCCCCCCeeEEEECC
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD---VDR---L--TY-SVLPQDCGVGEGSWSGLCFSP 158 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~---~~~---~--~~-~~~~~~~~~~~~~~~~l~~~p 158 (369)
.-.|+-.|.+++++|+. .++.+++++|+|.-|++.++... ++. . .+ ...++...+. .-+.+++.++
T Consensus 138 ~~~H~~s~~~vals~d~----~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~-keil~~avS~ 212 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDD----KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV-KEILTLAVSS 212 (479)
T ss_pred eccccCcceEEEeeccc----cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc-ceeEEEEEcC
Confidence 45899999999999984 78889999999999999877432 111 0 01 0111111111 2245799999
Q ss_pred CCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
++.++|++ +.|..|.|||... +++.+.. |...|..+.+- .....+.+++.|.+|++|++... ..+.++
T Consensus 213 -Dgkylatg-g~d~~v~Iw~~~t~ehv~~~~g--hr~~V~~L~fr---~gt~~lys~s~Drsvkvw~~~~~---s~vetl 282 (479)
T KOG0299|consen 213 -DGKYLATG-GRDRHVQIWDCDTLEHVKVFKG--HRGAVSSLAFR---KGTSELYSASADRSVKVWSIDQL---SYVETL 282 (479)
T ss_pred -CCcEEEec-CCCceEEEecCcccchhhcccc--cccceeeeeee---cCccceeeeecCCceEEEehhHh---HHHHHH
Confidence 56688888 8999999999763 4444322 33333222211 12358999999999999999877 667777
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
-+| ++.|.+|.-..-+ .+-+|+.|+++++|++. .+....+.+| .+.+-+++|- +..+++|||.||.|.+|++.+
T Consensus 283 yGH-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~-~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGH-QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGG-EGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCC-ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCC-CCCeeeEEEe--cccceeeccCCceEEEeeecc
Confidence 666 6889998776666 55556699999999993 3444567788 8899999996 457899999999999999999
Q ss_pred CceeEEEEc-CC-----------Cee-eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 316 SSKVFAFRG-DS-----------NWL-GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 316 ~~~~~~~~g-~~-----------~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+++++.+- |. .|. ++..++..+++|+||.+|.|++|.+..+-
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 888888752 32 143 33346688999999999999999998883
No 111
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=2.7e-18 Score=156.91 Aligned_cols=240 Identities=12% Similarity=0.064 Sum_probs=158.5
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..+.+++|+|++ ..++++...++.+++||..++.. ...+..+. ....++|+|++..+++++ +.++
T Consensus 31 ~~~~~l~~~~dg---~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~~~------~~~~~~~~~~g~~l~~~~-~~~~ 95 (300)
T TIGR03866 31 QRPRGITLSKDG---KLLYVCASDSDTIQVIDLATGEV-----IGTLPSGP------DPELFALHPNGKILYIAN-EDDN 95 (300)
T ss_pred CCCCceEECCCC---CEEEEEECCCCeEEEEECCCCcE-----EEeccCCC------CccEEEECCCCCEEEEEc-CCCC
Confidence 446789999984 34446667788999999875411 11111111 123589999665444554 6789
Q ss_pred eEEEEeCCcc--eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-eEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 173 SIDVYDQDIH--LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-QLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
.|++||.... +..+.....+..+.+ +|++..+++++.++ .+.+||.+++ ..+..+... ..+.+++|
T Consensus 96 ~l~~~d~~~~~~~~~~~~~~~~~~~~~------~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~~~~--~~~~~~~~ 164 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPVGVEPEGMAV------SPDGKIVVNTSETTNMAHFIDTKTY---EIVDNVLVD--QRPRFAEF 164 (300)
T ss_pred eEEEEECCCCeEEeEeeCCCCcceEEE------CCCCCEEEEEecCCCeEEEEeCCCC---eEEEEEEcC--CCccEEEE
Confidence 9999998642 222221112233333 35566777666654 5778899876 555444433 45678999
Q ss_pred CCCC-cEE-EEeCCCcEEEEeCCCceeeeeccccc----cC--ceEEEEEcCCCCCEEEE-EECCCeEEEEECcCCceeE
Q 017601 250 SSTG-NIA-VAGADRTVTIYDPRRWSALSRWVHCS----KY--EITGLSFSSIDSNYIYV-QGVDYEVFCGQWRESSKVF 320 (369)
Q Consensus 250 sp~g-~la-sgs~D~~v~vwD~~~~~~~~~~~~h~----~~--~v~~l~~sp~d~~~l~s-~s~D~~i~vwd~~~~~~~~ 320 (369)
+|+| +|+ ++..++.|++||+++++.+..+..+. .. ....++|+| ++++++. .+.++++.+||.++++...
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9999 664 55569999999999988776654220 11 235789999 9988554 4567789999999888776
Q ss_pred EEEcCCCeeeeeEcCCCCEEEEE-eCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNWLGFSKCSNRDVLGGW-SDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~~~~~~~~d~~~l~sg-s~dg~I~iWd~~~~~~ 359 (369)
.+..+.....+...+++.+|+++ ..+|.|++||+++++.
T Consensus 244 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 244 YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 55322223455667899998876 4689999999998763
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.8e-19 Score=153.86 Aligned_cols=253 Identities=16% Similarity=0.171 Sum_probs=169.4
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~ 167 (369)
.+|++-|.++.|.+- +.++|+++.++++.|||.+.... ++.+..+=. .+++.+-.+.| +|.-++.+|+|
T Consensus 10 s~h~DlihdVs~D~~----GRRmAtCSsDq~vkI~d~~~~s~-----~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~c 79 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY----GRRMATCSSDQTVKIWDSTSDSG-----TWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATC 79 (361)
T ss_pred cCCcceeeeeeeccc----CceeeeccCCCcEEEEeccCCCC-----ceEEeeeEE-ecCCcEEEEEecCccccceEEEE
Confidence 578999999999886 47999999999999999754422 233222111 11233445777 56666788888
Q ss_pred ecccceEEEEeCC-----cc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC---ceeee
Q 017601 168 RSFSKSIDVYDQD-----IH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG---GCLHR 235 (369)
Q Consensus 168 ~s~d~~i~lwd~~-----~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~---~~~~~ 235 (369)
|+|+++.||+-. .+ ++.-........+..+.+.|.- -|-.|++++.||++|||+.-...+. ...+.
T Consensus 80 -S~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 80 -SYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH-LGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred -ecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh-cceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 999999999642 11 1111112233444444443332 2567888999999999987643211 11222
Q ss_pred ee------ccCCCcEEEEEECCCC----cEEEEeCC-----CcEEEEeC----CCceeeeeccccccCceEEEEEcCCCC
Q 017601 236 IC------GSVGDILYAVCSSSTG----NIAVAGAD-----RTVTIYDP----RRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 236 ~~------~~~~~~v~~v~~sp~g----~lasgs~D-----~~v~vwD~----~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++ +....+-.|+.|+|.- +||.|+.+ +.++||.. |++..+.++.+| +++|+.++|.|.-|
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~-~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH-TDPIRDISWAPNIG 236 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC-CCcceeeeeccccC
Confidence 32 0113678899999865 78888876 47889864 345677889999 99999999999544
Q ss_pred ---CEEEEEECCCeEEEEECcCC--------------------ceeEEEEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 297 ---NYIYVQGVDYEVFCGQWRES--------------------SKVFAFRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 297 ---~~l~s~s~D~~i~vwd~~~~--------------------~~~~~~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
.+||+++.|| |+||.++.. +.+..|.+|.. ...+...-.|..|+|.+.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 3689999999 999999741 33444556651 1122223379999999999999999
Q ss_pred ECC
Q 017601 353 DVV 355 (369)
Q Consensus 353 d~~ 355 (369)
...
T Consensus 316 kan 318 (361)
T KOG2445|consen 316 KAN 318 (361)
T ss_pred hhh
Confidence 754
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=4.4e-19 Score=175.49 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=185.8
Q ss_pred ccceeeEEEEeecCCCCceEEEEEe--cCCcEEEEEecCCCCCCccccccccCCCC--CCCCCCeeEEEECCCCceeEEE
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVD--SYGHLIVSKLDTSGKDVDRLTYSVLPQDC--GVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d--~~g~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
+...|.+|+.+|| +..+|+++ .+|.+.+|+.+.-..+.......++.+.. ..+.+.+.++.|+| ++.++|+
T Consensus 12 ~~~~IfSIdv~pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEee
Confidence 3466899999998 48999998 78888899987543211111111111111 11234567899999 5668999
Q ss_pred EecccceEEEEeCCc--------------ce---EE-EEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 167 ARSFSKSIDVYDQDI--------------HL---RT-LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~--------------~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
| |.|+.|.||+... .+ +. .....|...+..+.|. |++..|++++-|++|.|||.++.
T Consensus 87 G-SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws---p~~~~lvS~s~DnsViiwn~~tF- 161 (942)
T KOG0973|consen 87 G-SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS---PDDSLLVSVSLDNSVIIWNAKTF- 161 (942)
T ss_pred c-cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC---CCccEEEEecccceEEEEccccc-
Confidence 8 9999999997541 00 11 1122366666666654 46778999999999999999998
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccc-----cCceEEEEEcCCCCCEEEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCS-----KYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~-----~~~v~~l~~sp~d~~~l~s~ 302 (369)
..+.++.+| ...|-.+.|.|-| +||+-+.|++|+||++.++...+.+.++- ..-.+.+.||| ||.+|++.
T Consensus 162 --~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~ 237 (942)
T KOG0973|consen 162 --ELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASP 237 (942)
T ss_pred --eeeeeeecc-cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecch
Confidence 788888887 7899999999999 99999999999999988888877766551 12478999999 99999985
Q ss_pred E----CCCeEEEEECcCCceeEEEEcCCCeeeeeE---cC-------------CCC----EEEEEeCCCcEEEEECCCCc
Q 017601 303 G----VDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CS-------------NRD----VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s----~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~-------------d~~----~l~sgs~dg~I~iWd~~~~~ 358 (369)
- .-.++.|.+-.+-+.-..|-||. .+++. .| .++ .+|+||.|++|.||.....+
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecCC--CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 3 23478888877777778888998 34333 22 122 78999999999999987665
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 316 P 316 (942)
T KOG0973|consen 316 P 316 (942)
T ss_pred c
Confidence 4
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.1e-18 Score=151.02 Aligned_cols=241 Identities=15% Similarity=0.187 Sum_probs=169.8
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
++-++.|.++.|+|.+ ..|...+-+|.+++++..... + ..++.. +..+..++|.+ ...++++
T Consensus 10 npP~d~IS~v~f~~~~----~~LLvssWDgslrlYdv~~~~--l-~~~~~~--------~~plL~c~F~d--~~~~~~G- 71 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSS----SDLLVSSWDGSLRLYDVPANS--L-KLKFKH--------GAPLLDCAFAD--ESTIVTG- 71 (323)
T ss_pred CCChhceeeEEEcCcC----CcEEEEeccCcEEEEeccchh--h-hhheec--------CCceeeeeccC--CceEEEe-
Confidence 4456889999999763 344444588999999988551 1 111211 22355789987 4567777
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.|+.|+++|+...... ....|...+..+... +..+.++++|.|++|++||.|.. ..+..+... ..|+|+.
T Consensus 72 ~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~---~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d~~--kkVy~~~ 142 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYS---YEVGCVISGSWDKTIKFWDPRNK---VVVGTFDQG--KKVYCMD 142 (323)
T ss_pred ccCceEEEEEecCCcce-eeccCCCceEEEEee---ccCCeEEEcccCccEEEEecccc---ccccccccC--ceEEEEe
Confidence 89999999998632221 122233344444432 23569999999999999999975 566666554 7899987
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC----ceeEEE
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----SKVFAF 322 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----~~~~~~ 322 (369)
.+ | .|++|..|..|.+||+|+..... .-...++..+.+|++-| ++.-.+.+|.||+|.+=.++.. +..+.|
T Consensus 143 v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 143 VS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred cc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 64 5 89999999999999999954433 22333478899999999 8888899999999988777765 566777
Q ss_pred EcCCCe----------eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 323 RGDSNW----------LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 323 ~g~~~~----------~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|... ..+...|--..||||+.||.|.+||..+++.
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 777511 1222233456799999999999999988764
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.6e-19 Score=170.86 Aligned_cols=242 Identities=15% Similarity=0.134 Sum_probs=181.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+..|++.-+.|+|.|++ ..|.+++.+|.|++|+......+.+. +. .....+.+++.. .+.|+++
T Consensus 9 Ryaht~G~t~i~~d~~g----efi~tcgsdg~ir~~~~~sd~e~P~t----i~-----~~g~~v~~ia~~---s~~f~~~ 72 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDG----EFICTCGSDGDIRKWKTNSDEEEPET----ID-----ISGELVSSIACY---SNHFLTG 72 (933)
T ss_pred hhhccCceEEEEEcCCC----CEEEEecCCCceEEeecCCcccCCch----hh-----ccCceeEEEeec---ccceEEe
Confidence 45799999999999984 69999999999999987643111111 10 001113344443 3478888
Q ss_pred ecccceEEEEeCCcceE--EEEeeeCC-cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHLR--TLRTLWYP-SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~--~~~~~~~~-~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
+.+++|.+|..+.... .+.-+.-| ..+.+.. +|..++++|+|-.|++-++... .....+.++ ..+|
T Consensus 73 -s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g------~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh-~apV 141 (933)
T KOG1274|consen 73 -SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG------SGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGH-DAPV 141 (933)
T ss_pred -eccceEEEeeCCCCCccceeeeeeccceEEEEec------CCcEEEeecCceeEEEEecccc---chheeeccc-CCce
Confidence 9999999997653211 11111122 2333332 4678888999999999999887 666777776 7999
Q ss_pred EEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.++.|+|++ +||+.+.||.|++||+.++.+..++.+- ....+..++|+| ++..++..+.|++|++++....
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCc
Confidence 999999999 9999999999999999998888777642 124578899999 9888999999999999999999
Q ss_pred ceeEEEEcCC---CeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 317 SKVFAFRGDS---NWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 317 ~~~~~~~g~~---~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+..+.++... .+..+..+|+|.+||+++.||.|.|||+++.
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 9999997633 2233344779999999999999999999863
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.6e-19 Score=152.66 Aligned_cols=250 Identities=12% Similarity=0.114 Sum_probs=169.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.++|.+++|+.|+ +.+|++..++.|++|++..-.. ..+ ..+.. +... .--+.++|.|+-..+++.+
T Consensus 82 LKgH~~~vt~~~FsSdG----K~lat~~~Dr~Ir~w~~~DF~~--~eH-r~~R~-nve~--dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDG----KKLATISGDRSIRLWDVRDFEN--KEH-RCIRQ-NVEY--DHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred hhccCCceeeeEEcCCC----ceeEEEeCCceEEEEecchhhh--hhh-hHhhc-cccC--CCceEEEECCCcceEEEEE
Confidence 56999999999999984 8999999999999999974311 000 11110 0000 0124699999877777766
Q ss_pred ecccceEEEEeCCcce-----EE-EEe----eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 168 RSFSKSIDVYDQDIHL-----RT-LRT----LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~-----~~-~~~----~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
-...++++|...+.. .. .+. +.....+..+.... ...+..+.+++.|.+|.|||++ + +.+..+.
T Consensus 152 -~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-G---q~L~~id 225 (420)
T KOG2096|consen 152 -KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-G---QLLQSID 225 (420)
T ss_pred -ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-C---ceeeeec
Confidence 566789999653211 00 000 00011111222111 1224467778999999999998 6 6777776
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC---Cc-----eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR---RW-----SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~---~~-----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
.. ...-+..+.||+| .+|+++-.--|+||.+- .| ..+..++|| +..|+.++||+ +.+.+++.|.||++
T Consensus 226 tn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn-~S~r~vtvSkDG~w 302 (420)
T KOG2096|consen 226 TN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSN-SSTRAVTVSKDGKW 302 (420)
T ss_pred cc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCC-CcceeEEEecCCcE
Confidence 54 4666778999999 89999988899999852 22 235678999 99999999999 99999999999999
Q ss_pred EEEECcC-------CceeEEE-------EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRE-------SSKVFAF-------RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~-------~~~~~~~-------~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|+||.+- .+.++.+ .+.. ..+.-||+|+.||.. ....++++..++++.
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVS-FGSDLKVFASEDGKD 364 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEee-cCCceEEEEcccCcc
Confidence 9999853 2223322 1112 344457788877654 456799999988764
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.1e-18 Score=158.16 Aligned_cols=238 Identities=12% Similarity=0.064 Sum_probs=169.7
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|..+|-+++.|+|+ ..+|+++.+-++.||+.++. .+.+.+..|.. .+.+++|-. +...+.++ +
T Consensus 200 ~h~keil~~avS~Dg----kylatgg~d~~v~Iw~~~t~-----ehv~~~~ghr~-----~V~~L~fr~-gt~~lys~-s 263 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG----KYLATGGRDRHVQIWDCDTL-----EHVKVFKGHRG-----AVSSLAFRK-GTSELYSA-S 263 (479)
T ss_pred cccceeEEEEEcCCC----cEEEecCCCceEEEecCccc-----chhhccccccc-----ceeeeeeec-Cccceeee-e
Confidence 899999999999984 89999999999999999865 22222333433 356899987 55667777 8
Q ss_pred ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 170 FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|++|++|+++.....-..+.|+..+.-+.... -.+.++++ -|+++++|++... .. ..+.++ .+.+-|++
T Consensus 264 ~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~----reR~vtVGgrDrT~rlwKi~ee---sq-lifrg~-~~sidcv~ 334 (479)
T KOG0299|consen 264 ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS----RERCVTVGGRDRTVRLWKIPEE---SQ-LIFRGG-EGSIDCVA 334 (479)
T ss_pred cCCceEEEehhHhHHHHHHhCCccceeeechhc----ccceEEeccccceeEEEecccc---ce-eeeeCC-CCCeeeEE
Confidence 999999999874332222344666555554322 35788876 7999999999533 22 234444 57999999
Q ss_pred ECCCCcEEEEeCCCcEEEEeCCCceeeeecc-ccc----------cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-
Q 017601 249 SSSTGNIAVAGADRTVTIYDPRRWSALSRWV-HCS----------KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES- 316 (369)
Q Consensus 249 ~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~-~h~----------~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~- 316 (369)
|-.+..+++||.||+|.+|++.+.+++.+.. .|. ...|++|+..| ...+++|||.+|.||+|-+..+
T Consensus 335 ~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 335 FINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred EecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCc
Confidence 9877799999999999999999988887654 220 22789999999 9999999999999999999876
Q ss_pred ---ceeEEEEcCCCeeeeeEcCCCC-EEEEEeCCCcEEEEE
Q 017601 317 ---SKVFAFRGDSNWLGFSKCSNRD-VLGGWSDSGSIFVAD 353 (369)
Q Consensus 317 ---~~~~~~~g~~~~~~~~~~~d~~-~l~sgs~dg~I~iWd 353 (369)
.++..+.-..-...+...++|. ++++.+....+=-|-
T Consensus 414 r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 414 RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred cccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 2333332111112333355777 555666666665553
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.8e-18 Score=149.78 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=166.0
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+..|...+.+.+|.++ ..+.+++-+|.|+.+|+.++.. ..+..| ++++.++.+++. .+.+++
T Consensus 49 ~~~~~~~plL~c~F~d~-----~~~~~G~~dg~vr~~Dln~~~~------~~igth-----~~~i~ci~~~~~-~~~vIs 111 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFADE-----STIVTGGLDGQVRRYDLNTGNE------DQIGTH-----DEGIRCIEYSYE-VGCVIS 111 (323)
T ss_pred hheecCCceeeeeccCC-----ceEEEeccCceEEEEEecCCcc------eeeccC-----CCceEEEEeecc-CCeEEE
Confidence 35689999999999885 5888999999999999987632 223333 345678999984 456666
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ |+|++|++||........ ....+..+-.+.. .++.|+.++.|..+.+||+|..+ ...+.....-...+.|
T Consensus 112 g-sWD~~ik~wD~R~~~~~~-~~d~~kkVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~--~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 112 G-SWDKTIKFWDPRNKVVVG-TFDQGKKVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLD--EPFQRRESSLKYQTRC 182 (323)
T ss_pred c-ccCccEEEEecccccccc-ccccCceEEEEec-----cCCEEEEeecCceEEEEEccccc--chhhhccccceeEEEE
Confidence 6 999999999986422221 2222334444432 35688888999999999999763 2222211111378999
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeecccccc---------CceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSK---------YEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~---------~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
|++-|++ -++++|-||.|.+=.+... +....|+.| . .+|++++|+| --+.|+||+.||.|.+||
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH-r~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH-RLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-ecccCCceEEEEeceeEecc-ccceEEecCCCceEEEcc
Confidence 9999988 8899999999987555543 333455555 3 4799999999 677899999999999999
Q ss_pred CcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeC
Q 017601 313 WRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 313 ~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~ 345 (369)
+.+.+.+..|..-. ....+..+.||..||.++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99988877775543 2233444559999998874
No 119
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.5e-19 Score=166.38 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=157.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|-+++|.. .++.+++.+|.|..+|+....... . .++.|. ..+++++|++ +..++|++ +.
T Consensus 259 h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~-~---~~~~H~-----qeVCgLkws~-d~~~lASG-gn 321 (484)
T KOG0305|consen 259 HASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVV-S---TLQGHR-----QEVCGLKWSP-DGNQLASG-GN 321 (484)
T ss_pred cCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhh-h---hhhccc-----ceeeeeEECC-CCCeeccC-CC
Confidence 999999999974 589999999999999997552111 1 122232 2378999999 56688998 99
Q ss_pred cceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
|+.+.|||.......++...|..++..+.+.|..+ +.|++++ .|++|++||..++ ..+..+... ..|.+|.
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--~lLAsGGGs~D~~i~fwn~~~g---~~i~~vdtg--sQVcsL~ 394 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--GLLATGGGSADRCIKFWNTNTG---ARIDSVDTG--SQVCSLI 394 (484)
T ss_pred ccceEeccCCCccccEEEeccceeeeEeeeCCCcc--CceEEcCCCcccEEEEEEcCCC---cEecccccC--CceeeEE
Confidence 99999999854333344444555665666555433 4666644 5999999999988 788777665 8999999
Q ss_pred ECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 249 SSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 249 ~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
|++.. .|++ |-.++.|.||+..+.+.+..+.+| ...|..+++|| ||..+++++.|.++++|++-..
T Consensus 395 Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH-~~RVl~la~SP-dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH-TSRVLYLALSP-DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-cceeEEEEECC-CCCEEEEecccCcEEeccccCC
Confidence 99998 5544 456789999999999999999999 99999999999 9999999999999999998663
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.3e-19 Score=160.50 Aligned_cols=211 Identities=15% Similarity=0.077 Sum_probs=161.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
++--.+.|.+|+-+|.+ ..|+.+...|++++|.+.++.- ...+..|-.. ++++.|+- ++.+|.++
T Consensus 77 ~~v~Pg~v~al~s~n~G----~~l~ag~i~g~lYlWelssG~L-----L~v~~aHYQ~-----ITcL~fs~-dgs~iiTg 141 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLG----YFLLAGTISGNLYLWELSSGIL-----LNVLSAHYQS-----ITCLKFSD-DGSHIITG 141 (476)
T ss_pred hcccccceeeeecCCCc----eEEEeecccCcEEEEEeccccH-----HHHHHhhccc-----eeEEEEeC-CCcEEEec
Confidence 55567899999999874 6777777889999999997721 1112223222 56899998 56688888
Q ss_pred ecccceEEEEeCCc--------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 168 RSFSKSIDVYDQDI--------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 168 ~s~d~~i~lwd~~~--------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
|.|+.|.+|++.. ....++.+. |.-.+..+.....+ -..+++++|.|.++++||+..+ ..+.++.-
T Consensus 142 -skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg-~~~rl~TaS~D~t~k~wdlS~g---~LLlti~f 216 (476)
T KOG0646|consen 142 -SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG-TNARLYTASEDRTIKLWDLSLG---VLLLTITF 216 (476)
T ss_pred -CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC-ccceEEEecCCceEEEEEeccc---eeeEEEec
Confidence 9999999997532 222333332 33455555543322 3569999999999999999998 78888887
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----------------eeeeeccccccC--ceEEEEEcCCCCCEE
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----------------SALSRWVHCSKY--EITGLSFSSIDSNYI 299 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----------------~~~~~~~~h~~~--~v~~l~~sp~d~~~l 299 (369)
+ ..+.+++.+|-+ .+..|+.+|.|.+.++.+. ..+..+.|| .+ .|++++.|- ||.+|
T Consensus 217 p--~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~-DgtlL 292 (476)
T KOG0646|consen 217 P--SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAIST-DGTLL 292 (476)
T ss_pred C--CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEec-CccEE
Confidence 7 899999999999 9999999999988886542 234567789 77 999999999 99999
Q ss_pred EEEECCCeEEEEECcCCceeEEE
Q 017601 300 YVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+||+.||.|+|||+...++++++
T Consensus 293 lSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred EeeCCCCCEEEEecchHHHHHHH
Confidence 99999999999999886666555
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.3e-20 Score=178.66 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=151.3
Q ss_pred eEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCC
Q 017601 163 MAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGD 242 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~ 242 (369)
.++.| ++|..+.||...+....+....|...+..+. ++.+...+++++.+|+|++||+... +.++++.++ ..
T Consensus 42 ~~~~G-g~~~k~~L~~i~kp~~i~S~~~hespIeSl~---f~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh-~~ 113 (825)
T KOG0267|consen 42 SLVTG-GEDEKVNLWAIGKPNAITSLTGHESPIESLT---FDTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGH-LL 113 (825)
T ss_pred eeccC-CCceeeccccccCCchhheeeccCCcceeee---cCcchhhhcccccCCceeeeehhhh---hhhhhhhcc-cc
Confidence 44444 8999999998876554443333444444444 2334456667788999999999988 888898887 78
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.+.++.|+|-+ ++|+|+.|.-+++||+|...+.+.+.+| ...|..++|+| +|+++++++.|.++++||...++.+..
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecC-CCceeeccCCcceeeeecccccccccc
Confidence 99999999999 9999999999999999999999999999 99999999999 999999999999999999999999999
Q ss_pred EEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 322 FRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 322 ~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.+|..- ..+..-+..-++++||.|++|++||+++-+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeE
Confidence 9988711 122223345679999999999999998654
No 122
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.5e-17 Score=143.33 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=161.8
Q ss_pred ccceeeEEEEeecCCCCceEEEE-EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 91 HRSEVQSIALAETDSSGYMVLGS-VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las-~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
++-.|..++|.... ..++.+ .-.+-.|+..++.+. ....-..+|... +.+|+.+|-+ ..++++ |
T Consensus 55 kkyG~~~~~Fth~~---~~~i~sStk~d~tIryLsl~dN-----kylRYF~GH~~~-----V~sL~~sP~~-d~FlS~-S 119 (311)
T KOG1446|consen 55 KKYGVDLACFTHHS---NTVIHSSTKEDDTIRYLSLHDN-----KYLRYFPGHKKR-----VNSLSVSPKD-DTFLSS-S 119 (311)
T ss_pred ccccccEEEEecCC---ceEEEccCCCCCceEEEEeecC-----ceEEEcCCCCce-----EEEEEecCCC-CeEEec-c
Confidence 44567888887642 234433 323457877777644 111223444432 5589999955 677887 9
Q ss_pred ccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEE
Q 017601 170 FSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILY 245 (369)
Q Consensus 170 ~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~ 245 (369)
.|++|++||+. ++.-.+.. ..+..++ ++|+|-.++++.....|+|||+|.-++ .+..++... .....+
T Consensus 120 ~D~tvrLWDlR~~~cqg~l~~-~~~pi~A------fDp~GLifA~~~~~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~ 191 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQGLLNL-SGRPIAA------FDPEGLIFALANGSELIKLYDLRSFDK-GPFTTFSITDNDEAEWT 191 (311)
T ss_pred cCCeEEeeEecCCCCceEEec-CCCccee------ECCCCcEEEEecCCCeEEEEEecccCC-CCceeEccCCCCcccee
Confidence 99999999986 23322222 2222222 335444444444555999999997532 444444321 146789
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce---EEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI---TGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v---~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
.+.||||| .++.+...+.+.+.|.-+|....++.++ ...- .+..|+| |++++++|+.||+|.+|+++++..+..
T Consensus 192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~-~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGY-PNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeec-cCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 99999999 8888888999999999999999998877 4432 5789999 999999999999999999999999999
Q ss_pred EEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 322 FRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 322 ~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
++|.. .+-..|. +..+..-.+.+..+.+|=...
T Consensus 270 ~~~~~--~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 270 LRGPN--GGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred ecCCC--CCCccccccCCceeeeeecCceEEEEeccc
Confidence 98842 1222222 455555556677888886543
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.3e-20 Score=177.06 Aligned_cols=233 Identities=17% Similarity=0.178 Sum_probs=171.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
...|...|.++.+-.. ...++.+..+-.+-+|...+... + ..+..|. .++-+|.|++ .+.+++.+
T Consensus 24 ~~~hsaav~~lk~~~s----~r~~~~Gg~~~k~~L~~i~kp~~-i----~S~~~he-----spIeSl~f~~-~E~Llaag 88 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKS----SRSLVTGGEDEKVNLWAIGKPNA-I----TSLTGHE-----SPIESLTFDT-SERLLAAG 88 (825)
T ss_pred hhhhhhhhceeeeecc----ceeeccCCCceeeccccccCCch-h----heeeccC-----CcceeeecCc-chhhhccc
Confidence 4467888888887222 35777777777787888775422 1 1233343 3455899999 55667776
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
+.+++|++||+. +.++++.. +...+..++++|+ +.+++.++.|.-+++||.|.. .|.+.+.++ ...+.
T Consensus 89 -sasgtiK~wDleeAk~vrtLtg--h~~~~~sv~f~P~---~~~~a~gStdtd~~iwD~Rk~---Gc~~~~~s~-~~vv~ 158 (825)
T KOG0267|consen 89 -SASGTIKVWDLEEAKIVRTLTG--HLLNITSVDFHPY---GEFFASGSTDTDLKIWDIRKK---GCSHTYKSH-TRVVD 158 (825)
T ss_pred -ccCCceeeeehhhhhhhhhhhc--cccCcceeeeccc---eEEeccccccccceehhhhcc---CceeeecCC-cceeE
Confidence 999999999986 44454432 2222333334443 446667888999999999977 799998876 68899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
++.|+|+| ++++|++|.+++|||.+.|+.+.+|..| ...+.++.|+| ..-++++||.|+++++||+++-+.+-....
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99999999 9999999999999999999999999999 99999999999 888999999999999999997555544433
Q ss_pred CC-CeeeeeEcCCCCEEEEEeCCC
Q 017601 325 DS-NWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 325 ~~-~~~~~~~~~d~~~l~sgs~dg 347 (369)
.. ...+....+++..+++|.++.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 22 001222244777777776554
No 124
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-18 Score=158.12 Aligned_cols=253 Identities=12% Similarity=0.122 Sum_probs=182.6
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
|.++.|+... ..++|+...+..+.+|.-.....+++.. ...... .+ .||+.... ..+++++ +..++|
T Consensus 37 ~~s~~w~~~n---~lvvas~~gdk~~~~~~K~g~~~~Vp~~-~k~~gd----~~---~Cv~~~s~-S~y~~sg-G~~~~V 103 (673)
T KOG4378|consen 37 DFSFNWQRRN---FLVVASMAGDKVMRIKEKDGKTPEVPRV-RKLTGD----NA---FCVACASQ-SLYEISG-GQSGCV 103 (673)
T ss_pred ceeeeccccc---eEEEeecCCceeEEEecccCCCCcccee-eccccc----hH---HHHhhhhc-ceeeecc-CcCcee
Confidence 8999998763 4677777777788888765332222210 001110 01 12333331 2345555 889999
Q ss_pred EEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 175 DVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 175 ~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
+|||+.. .+... ...|...+.++.+ +..+.+|++++..|.|.|..+.++ ....+|.+..+..|.-+.|+|..
T Consensus 104 kiwdl~~kl~hr~-lkdh~stvt~v~Y---N~~DeyiAsvs~gGdiiih~~~t~---~~tt~f~~~sgqsvRll~ys~sk 176 (673)
T KOG4378|consen 104 KIWDLRAKLIHRF-LKDHQSTVTYVDY---NNTDEYIASVSDGGDIIIHGTKTK---QKTTTFTIDSGQSVRLLRYSPSK 176 (673)
T ss_pred eehhhHHHHHhhh-ccCCcceeEEEEe---cCCcceeEEeccCCcEEEEecccC---ccccceecCCCCeEEEeeccccc
Confidence 9999862 22211 2234566666663 334678999999999999999988 55556665546778889999998
Q ss_pred --cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee
Q 017601 254 --NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG 330 (369)
Q Consensus 254 --~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~ 330 (369)
+|.+++.+|.|.+||+....+.+.+. .| ..+...|+|+|.+..+|++.|+|..|.+||.+..+....+.-......
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~~~~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plst 255 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFHASEAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLST 255 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccchhhhc-cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcce
Confidence 88999999999999999888877654 67 999999999998889999999999999999998766666654443345
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
+...++|.+|+.|+..|.|+.||++..+.++..+..|.
T Consensus 256 vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 256 VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred eeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 55566999999999999999999999887776665543
No 125
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=165.06 Aligned_cols=250 Identities=18% Similarity=0.163 Sum_probs=184.5
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--CceeE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QWSMA 164 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~~~~ 164 (369)
..+.-+-.|.+|+.||+ ++.||++|.-|+++++++..... ...+..|+. .+.++.|+-. ...++
T Consensus 454 s~~d~r~G~R~~~vSp~----gqhLAsGDr~GnlrVy~Lq~l~~-----~~~~eAHes-----EilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPD----GQHLASGDRGGNLRVYDLQELEY-----TCFMEAHES-----EILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhcCcccceEEEEECCC----cceecccCccCceEEEEehhhhh-----hhheecccc-----eeEEEeecCchhhhHhh
Confidence 34667788999999998 48999999999999999985411 112333433 3557777642 23567
Q ss_pred EEEecccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--- 240 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--- 240 (369)
|++ +.|.-|.+||.......++++. |...++.+.+...+- .-.+++++.|..+.+--.+....+... ..++.
T Consensus 520 ASa-srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gl-n~~MiscGADksimFr~~qk~~~g~~f--~r~t~t~~ 595 (1080)
T KOG1408|consen 520 ASA-SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGL-NRKMISCGADKSIMFRVNQKASSGRLF--PRHTQTLS 595 (1080)
T ss_pred hhc-cCCceEEEEecccccchhhhhcccccceeEEEEeecCC-ceEEEeccCchhhheehhccccCceec--cccccccc
Confidence 887 9999999999976544444433 344444433322111 247999999987654433322111111 11111
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc---cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH---CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~---h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
...+|.++..|.. ++++++.|+.|+|||+.+++....|++ | .+...-+...| .|.|+++...|+++.++|.-++
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECC-CccEEEEeecCCceEEEEeccc
Confidence 3679999999999 999999999999999999999999985 4 56788899999 9999999999999999999999
Q ss_pred ceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 317 SKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 317 ~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+|+....||+.. .++...+|-+.|++.+.||.|+||.+..
T Consensus 674 EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999843 3455577889999999999999999853
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2.6e-18 Score=148.36 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=162.3
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~ 166 (369)
...|.+.|-+++|+.|+ ..+++++.++.+.+||+..+ + ...+..|+.++ ..+.|-+... ..|++
T Consensus 68 ~~~~~~PvL~v~Wsddg----skVf~g~~Dk~~k~wDL~S~-Q-----~~~v~~Hd~pv-----kt~~wv~~~~~~cl~T 132 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDG----SKVFSGGCDKQAKLWDLASG-Q-----VSQVAAHDAPV-----KTCHWVPGMNYQCLVT 132 (347)
T ss_pred hhccCCCeEEEEEccCC----ceEEeeccCCceEEEEccCC-C-----eeeeeecccce-----eEEEEecCCCcceeEe
Confidence 56799999999999884 68888999999999999865 1 23344455443 3566655222 36677
Q ss_pred EecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 167 ARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+ |+|++|+.||...... +....-|..+-.... ....++.+..+..|.+|+++.+. ...++...+..-.+.|
T Consensus 133 G-SWDKTlKfWD~R~~~p-v~t~~LPeRvYa~Dv-----~~pm~vVata~r~i~vynL~n~~--te~k~~~SpLk~Q~R~ 203 (347)
T KOG0647|consen 133 G-SWDKTLKFWDTRSSNP-VATLQLPERVYAADV-----LYPMAVVATAERHIAVYNLENPP--TEFKRIESPLKWQTRC 203 (347)
T ss_pred c-ccccceeecccCCCCe-eeeeeccceeeehhc-----cCceeEEEecCCcEEEEEcCCCc--chhhhhcCcccceeeE
Confidence 7 9999999999863322 222233333322221 12356667788999999998763 2333333222467899
Q ss_pred EEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeecccccc---------CceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 247 VCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSK---------YEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 247 v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~---------~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
|+..++. ..|.|+-.|.+.+..+..+ +.-.+|+-| + +.|++|+|+| .-..|+++|.||++.+||-.
T Consensus 204 va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH-R~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH-RSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe-ccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecch
Confidence 9988888 8899999999999887765 444566666 4 3588999999 77789999999999999988
Q ss_pred CCceeEEEEcCCCeeeeeEcC---CCCEEE-EEeCC
Q 017601 315 ESSKVFAFRGDSNWLGFSKCS---NRDVLG-GWSDS 346 (369)
Q Consensus 315 ~~~~~~~~~g~~~~~~~~~~~---d~~~l~-sgs~d 346 (369)
....++....|. ..+..|. +|.++| ..+.|
T Consensus 282 ar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 282 ARTKLKTSETHP--QPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred hhhhhhccCcCC--CccceeEecCCCCEEEEEeecc
Confidence 777777777777 6666654 777655 44444
No 127
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=150.87 Aligned_cols=254 Identities=18% Similarity=0.172 Sum_probs=170.4
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCC--ccccccccCCCC-CCCCCC-eeEEEEC-------CCCcee
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDV--DRLTYSVLPQDC-GVGEGS-WSGLCFS-------PSQWSM 163 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~-~~~l~~~-------p~~~~~ 163 (369)
.....||||+ ..+.+-+.+-.+.+|++-...-.- +...+ +.-+.. ..-+++ +...+|- | ...+
T Consensus 52 ~kgckWSPDG----SciL~~sedn~l~~~nlP~dlys~~~~~~~~-~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDG----SCILSLSEDNCLNCWNLPFDLYSKKADGPLN-FSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNL 125 (406)
T ss_pred hccceeCCCC----ceEEeecccCeeeEEecChhhcccCCCCccc-cccceeEEeccCCEEEEEEeeeccccCCC-ccce
Confidence 3577899995 455555666678899876431100 00000 000000 000111 2344443 3 3457
Q ss_pred EEEEecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-CcccCCceee-eeec-
Q 017601 164 AAVARSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMKENGGCLH-RICG- 238 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~~~~~~~~-~~~~- 238 (369)
+|++ +.+.-|++||. ++...+++...+...+....+..|+|||.+|++ +....|++||+ |.+. ...+. ++..
T Consensus 126 ~a~s-sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr-~c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVS-SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGR-DCPVYTTVTKG 202 (406)
T ss_pred eeec-cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCC-CCcchhhhhcc
Confidence 7777 89999999996 344445555555554444445556777766555 67789999999 5442 22222 2222
Q ss_pred c--CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEEC
Q 017601 239 S--VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQW 313 (369)
Q Consensus 239 ~--~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~ 313 (369)
. ..+.|.+++|+|.. .+|.|+.-.++-||.-....++..+-+| ++.|+.+.|.+ +|+.|.+|+. |-.|.+||+
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCE-DGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEecc-CcCeecccccCCCeEEEEee
Confidence 1 03678999999988 8999999999999988889999999999 99999999999 9999999987 779999999
Q ss_pred cCC-ceeEEEEcCC---Ce-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 314 RES-SKVFAFRGDS---NW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 314 ~~~-~~~~~~~g~~---~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.. ..+..+..|. +- .-+.--+++++|++|+.||.|++||++.-.+
T Consensus 281 R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 973 4455555443 10 1122245899999999999999999998444
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.1e-17 Score=157.10 Aligned_cols=254 Identities=14% Similarity=0.112 Sum_probs=166.9
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.....|.+.|..+.|.|. ...|.+.+.+-+++.||+.+.. +.+.. ...+|. +.+-++||.|.++..|+
T Consensus 94 k~~~aH~nAifDl~wapg----e~~lVsasGDsT~r~Wdvk~s~--l~G~~-~~~GH~-----~SvkS~cf~~~n~~vF~ 161 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPG----ESLLVSASGDSTIRPWDVKTSR--LVGGR-LNLGHT-----GSVKSECFMPTNPAVFC 161 (720)
T ss_pred cccccccceeEeeccCCC----ceeEEEccCCceeeeeeeccce--eecce-eecccc-----cccchhhhccCCCccee
Confidence 345689999999999994 3677777777799999998652 22211 112222 23457999999999999
Q ss_pred EEecccceEEEEeCCcce----------------------EEE----Eeee-CCc---c---eeeeccCCCCCCCCcEEE
Q 017601 166 VARSFSKSIDVYDQDIHL----------------------RTL----RTLW-YPS---S---LNFVQNLSPVNGGPNMLA 212 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~----------------------~~~----~~~~-~~~---~---v~~~~~~~~~~~~~~lla 212 (369)
+| +.|+.|.|||..... +.+ +... +.. . +.++ .|+..|++
T Consensus 162 tG-gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaS 234 (720)
T KOG0321|consen 162 TG-GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLAS 234 (720)
T ss_pred ec-cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeee
Confidence 98 999999999963100 000 0000 000 0 2222 25678888
Q ss_pred EEc-CCeEEEEeCCcccCC---ceeeeeeccC----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeecccc
Q 017601 213 VTE-GCQLTIWDLRMKENG---GCLHRICGSV----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWVHC 281 (369)
Q Consensus 213 ~s~-d~~v~iwD~~~~~~~---~~~~~~~~~~----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~~h 281 (369)
++. |+.|++||+|..... ++......++ ...+.++.....| +|.+...|++|.+||+++ -.++..+.++
T Consensus 235 aga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~ 314 (720)
T KOG0321|consen 235 AGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK 314 (720)
T ss_pred ccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc
Confidence 876 999999999976221 1111111110 2346777777888 555555599999999987 4556677777
Q ss_pred ccCceE-EEEEcCCCCCEEEEEECCCeEEEEECcCC-ceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECC
Q 017601 282 SKYEIT-GLSFSSIDSNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 282 ~~~~v~-~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~ 355 (369)
....++ .-..+| |+.+|+||+.|...++|.+... .....+.||. ..+.. ++ .-.-++++++|-+++||++.
T Consensus 315 ~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 315 LNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 333322 224688 9999999999999999999874 3455667887 33332 33 33345666999999999997
Q ss_pred CCcchh
Q 017601 356 AKENEI 361 (369)
Q Consensus 356 ~~~~~~ 361 (369)
.+-+++
T Consensus 392 ~~l~e~ 397 (720)
T KOG0321|consen 392 NGLEEI 397 (720)
T ss_pred Cchhhc
Confidence 765443
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=157.06 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=141.8
Q ss_pred ceeEEEEecccceEEEEeCCcc--e---EEEE----------------eeeCCcceeeeccCCCCCCCCcEEEEEcCCeE
Q 017601 161 WSMAAVARSFSKSIDVYDQDIH--L---RTLR----------------TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQL 219 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~--~---~~~~----------------~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v 219 (369)
++++|+| ..|..|.|||++.. + ..+. ...|...+-++.+.. .-.+.|+++|.|.+|
T Consensus 192 gNyvAiG-tmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 192 GNYVAIG-TMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTV 268 (463)
T ss_pred cceEEEe-ccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceE
Confidence 4688998 89999999997521 1 1110 001222222333211 113467778999999
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee-eeeccccccCceEEEEEcCCCC
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA-LSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~-~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++||+.++ ++...+.++ ++.|.++.|+|.. .|++|+.|++|+|.|.|.... -..|+- .+.|-.++|.|+..
T Consensus 269 ~lWD~~~g---~p~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se 342 (463)
T KOG0270|consen 269 KLWDVDTG---KPKSSITHH-GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSE 342 (463)
T ss_pred EEEEcCCC---Ccceehhhc-CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCc
Confidence 99999999 899999877 8999999999998 999999999999999996332 233442 47799999999888
Q ss_pred CEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 297 NYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
..++++..||+++-+|+|. ++++.++..|. ..+.. .. ...+++++|.|+.|++|++...
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 8889999999999999998 58999999997 44444 22 6778999999999999998654
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.9e-18 Score=145.23 Aligned_cols=217 Identities=17% Similarity=0.136 Sum_probs=153.1
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM 163 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 163 (369)
.+.++.+|.+.|+.++|.... -+.+|||++-+|+|.+|+.+.+.- ...+.... .+..+.+++|.|.+-++
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk--~G~iLAScsYDgkVIiWke~~g~w---~k~~e~~~-----h~~SVNsV~wapheygl 117 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPK--FGTILASCSYDGKVIIWKEENGRW---TKAYEHAA-----HSASVNSVAWAPHEYGL 117 (299)
T ss_pred eeeEecCCCCCeeEEeecccc--cCcEeeEeecCceEEEEecCCCch---hhhhhhhh-----hcccceeecccccccce
Confidence 455688999999999997643 357999999999999999886521 11122222 23456789999987666
Q ss_pred EEEEecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCC-----------CcEEEEEcCCeEEEEeCCccc
Q 017601 164 AAVARSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGG-----------PNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~-----------~~lla~s~d~~v~iwD~~~~~ 228 (369)
++.|++.||.|.|++.+.. ...+ ...|+..++.+.+.|....| .+|++++-|+.|+||+...+
T Consensus 118 ~LacasSDG~vsvl~~~~~g~w~t~ki-~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~- 195 (299)
T KOG1332|consen 118 LLACASSDGKVSVLTYDSSGGWTTSKI-VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD- 195 (299)
T ss_pred EEEEeeCCCcEEEEEEcCCCCccchhh-hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-
Confidence 6555599999999976422 1111 11233334444443332211 46999999999999999875
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCCc--eeeee-ccccccCceEEEEEcCCCCCEEE
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRRW--SALSR-WVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~~--~~~~~-~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+-..-.++..| .+.|..++|.|.- .||++|.||+|.||-.+.. +-..+ ++.- ...+..+.||+ .|+.|+
T Consensus 196 ~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~-sGn~La 272 (299)
T KOG1332|consen 196 SWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSL-SGNILA 272 (299)
T ss_pred chhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEEEEec-cccEEE
Confidence 22333457766 7999999999974 8999999999999986631 11112 2223 56799999999 999999
Q ss_pred EEECCCeEEEEECcC
Q 017601 301 VQGVDYEVFCGQWRE 315 (369)
Q Consensus 301 s~s~D~~i~vwd~~~ 315 (369)
.++.|+.|.+|--..
T Consensus 273 Vs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 273 VSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCcEEEEEEeCC
Confidence 999999999997543
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=5.5e-18 Score=159.08 Aligned_cols=259 Identities=18% Similarity=0.176 Sum_probs=166.4
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
..|++-. ....+||.++.+|.|.++|.....-..+.. -+....|.. .+-.++|-| ++..|+++ +.|.++++
T Consensus 55 ~sFs~~~-n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-----AifDl~wap-ge~~lVsa-sGDsT~r~ 126 (720)
T KOG0321|consen 55 DSFSAAP-NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-----AIFDLKWAP-GESLLVSA-SGDSTIRP 126 (720)
T ss_pred ccccCCC-CccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-----eeEeeccCC-CceeEEEc-cCCceeee
Confidence 4555431 234799999999999999987542221111 122233433 244789999 78888888 89999999
Q ss_pred EeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc---------------CC--ceee---
Q 017601 177 YDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE---------------NG--GCLH--- 234 (369)
Q Consensus 177 wd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~---------------~~--~~~~--- 234 (369)
||+.. ++..--...|...+....+.+.++ ..|++++.||.|.|||+|... +. .+.+
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~--~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNP--AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCC--cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 99863 222211223444444444334433 477788999999999998431 00 0110
Q ss_pred ----eeeccCCCcEEE---EEECCCC-cEEEEeC-CCcEEEEeCCCceeeee--------ccccc--cCceEEEEEcCCC
Q 017601 235 ----RICGSVGDILYA---VCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSR--------WVHCS--KYEITGLSFSSID 295 (369)
Q Consensus 235 ----~~~~~~~~~v~~---v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~--------~~~h~--~~~v~~l~~sp~d 295 (369)
....+ ...|.+ +-+..|. .||+++. |+.|+|||+|+...... +.-|. ...++++.... .
T Consensus 205 kr~~k~kA~-s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-s 282 (720)
T KOG0321|consen 205 KRIRKWKAA-SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-S 282 (720)
T ss_pred ccccccccc-cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-C
Confidence 00001 123433 3445566 9999887 99999999998543322 11221 12466777766 7
Q ss_pred CCEEEEEECCCeEEEEECcC--CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCC
Q 017601 296 SNYIYVQGVDYEVFCGQWRE--SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKENEISALKGLV 368 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~--~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~ 368 (369)
|.+|.+.+.|+.|++||+.. -...+.|.|+.+-.-..+ ++|+.+|++|+.|...++|.+.+.+.....+.||.
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 78888888899999999987 346667777653211111 55999999999999999999999887777777763
No 132
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=5.1e-19 Score=156.04 Aligned_cols=195 Identities=14% Similarity=0.167 Sum_probs=145.2
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEE-----
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW----- 222 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw----- 222 (369)
|+.+++=+|.....+|++ +.||.|+|||+.. +.+++....+ -+.-+.. +...++++++|.+|+.|
T Consensus 68 GV~~lakhp~~ls~~aSG-s~DG~VkiWnlsqR~~~~~f~AH~G--~V~Gi~v-----~~~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASG-SCDGEVKIWNLSQRECIRTFKAHEG--LVRGICV-----TQTSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred ccchhhcCcchhhhhhcc-ccCceEEEEehhhhhhhheeecccC--ceeeEEe-----cccceEEecCCcceeeeeccCC
Confidence 355788899666778888 9999999999864 3344332221 1111110 01355566666555555
Q ss_pred ---------------------------------eCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEE
Q 017601 223 ---------------------------------DLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIY 267 (369)
Q Consensus 223 ---------------------------------D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vw 267 (369)
|.+.. .++..+.-. ...|.++.|+|.. .|++++.|++|.||
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~---~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRD---NPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccC---CccceeecC-CCceeEEecCCCcchheeeeccCCceEEE
Confidence 44333 455555533 4779999999998 89999999999999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCe-eeeeEcCCCCEEEEEeC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~ 345 (369)
|+|..++++.+.- +-.-+.++|+| .+-.+++++.|..++.+|++. .+.+..+.+|.+. +.+..+|.|+-++|||.
T Consensus 216 D~R~~~Pl~KVi~--~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 216 DLRQASPLKKVIL--TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ecccCCccceeee--eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 9999999987763 35678999999 999999999999999999987 6788889999832 34444789999999999
Q ss_pred CCcEEEEECCCCcc
Q 017601 346 SGSIFVADVVAKEN 359 (369)
Q Consensus 346 dg~I~iWd~~~~~~ 359 (369)
|.+|+||.+..+..
T Consensus 293 DksIRIf~~~~~~S 306 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHS 306 (433)
T ss_pred cceEEEeecCCCcc
Confidence 99999999987653
No 133
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=1.3e-18 Score=159.18 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=145.5
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEE--EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL--RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
++.+.++.. ...+.+| .-+.|+|||+....... ..+..-..=+|+......+|+..|+.+++-.++.|||+....
T Consensus 422 VcAvtIS~~-trhVyTg--GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 422 VCAVTISNP-TRHVYTG--GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEEEEecCC-cceeEec--CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC
Confidence 556677652 3345554 46899999986432111 111111122343333344688999999999999999998762
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
......+... .-.-++++.|||. ..+++..||.|.|||+++...++.|+|| .+.+.+|.+++ ||..|-+|+.|++
T Consensus 499 -prikaeltss-apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGh-tDGascIdis~-dGtklWTGGlDnt 574 (705)
T KOG0639|consen 499 -PRIKAELTSS-APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGH-TDGASCIDISK-DGTKLWTGGLDNT 574 (705)
T ss_pred -cchhhhcCCc-chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCC-CCCceeEEecC-CCceeecCCCccc
Confidence 1111222222 3456889999999 7788888999999999999999999999 99999999999 9999999999999
Q ss_pred EEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 308 VFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
||.||+++++.+..+.=.+.+.++..||++++|+.|-+++.+.|-....
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999987665543233225556689999999999999998876543
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.78 E-value=4.2e-16 Score=142.38 Aligned_cols=225 Identities=14% Similarity=0.062 Sum_probs=150.1
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTL 186 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~ 186 (369)
.++++...++.+++||+.+... ...+..+. ...+++|+|++..+++++ +.++.|.+||... ....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~-----~~~~~~~~------~~~~l~~~~dg~~l~~~~-~~~~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEV-----TRTFPVGQ------RPRGITLSKDGKLLYVCA-SDSDTIQVIDLATGEVIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCce-----EEEEECCC------CCCceEECCCCCEEEEEE-CCCCeEEEEECCCCcEEEec
Confidence 3677778889999999875421 11111111 123699999665445555 7889999999763 22222
Q ss_pred EeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-c
Q 017601 187 RTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-T 263 (369)
Q Consensus 187 ~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-~ 263 (369)
.....+. .+. +++++..++++ +.|+.+++||+++. +.+..+... ..+.+++|+|+| .+++++.++ .
T Consensus 70 ~~~~~~~---~~~---~~~~g~~l~~~~~~~~~l~~~d~~~~---~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 70 PSGPDPE---LFA---LHPNGKILYIANEDDNLVTVIDIETR---KVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred cCCCCcc---EEE---ECCCCCEEEEEcCCCCeEEEEECCCC---eEEeEeeCC--CCcceEEECCCCCEEEEEecCCCe
Confidence 2211222 222 23456556554 46899999999987 667666644 557889999999 888877765 5
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE-EECCCeEEEEECcCCceeEEEEcCC--------CeeeeeEc
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV-QGVDYEVFCGQWRESSKVFAFRGDS--------NWLGFSKC 334 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s-~s~D~~i~vwd~~~~~~~~~~~g~~--------~~~~~~~~ 334 (369)
+.+||.++++....+... .....++|+| ++++|+. +..|+.|++||+++++.+..+..+. ...++..+
T Consensus 139 ~~~~d~~~~~~~~~~~~~--~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s 215 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVD--QRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT 215 (300)
T ss_pred EEEEeCCCCeEEEEEEcC--CCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC
Confidence 678899888776654422 3457899999 9998754 4569999999999987766654221 01234446
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCcc
Q 017601 335 SNRDVLG-GWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 335 ~d~~~l~-sgs~dg~I~iWd~~~~~~ 359 (369)
+++++++ +.+.++.|.+||+++++.
T Consensus 216 ~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 216 KDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 7888754 445677899999987754
No 135
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.5e-18 Score=170.95 Aligned_cols=212 Identities=12% Similarity=0.133 Sum_probs=166.3
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++..|+|.|..|.|++.. ..+|||++++|.|+|||+.+-.. .+..... .....+.+|+|+.....+||
T Consensus 110 a~~~~h~G~V~gLDfN~~q---~nlLASGa~~geI~iWDlnn~~t-----P~~~~~~---~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQ---GNLLASGADDGEILIWDLNKPET-----PFTPGSQ---APPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred hhhcccCCceeeeeccccC---CceeeccCCCCcEEEeccCCcCC-----CCCCCCC---CCcccceEeccchhhhHHhh
Confidence 3466899999999999973 57999999999999999986421 1111100 01123568999997777888
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCC--cceeeeccCCCCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccC
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYP--SSLNFVQNLSPVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
++ +.++.+-|||+.+....+....++ ..+..+.|+|.. ..+++++++| -.|.+||+|... .+++.+.+|
T Consensus 179 S~-s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR~as--sP~k~~~~H- 252 (1049)
T KOG0307|consen 179 SG-SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLRFAS--SPLKILEGH- 252 (1049)
T ss_pred cc-CCCCCceeccccCCCcccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeecccccC--Cchhhhccc-
Confidence 88 899999999997653333332222 345666776633 3567776654 379999999764 677888777
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|.++.|.+.+ +|++++.|+.|.+|+..+++.+.++... .+.+..+.|+|.++..++.++.||.|-|+.+..
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 7889999999988 8999999999999999999999999987 889999999998899999999999999999876
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=149.55 Aligned_cols=220 Identities=17% Similarity=0.227 Sum_probs=161.2
Q ss_pred CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEE-eeeCCcc
Q 017601 118 GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLR-TLWYPSS 194 (369)
Q Consensus 118 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~-~~~~~~~ 194 (369)
-.+.+|.+.+... ...+.+-| +.+.+++-+|. +.+++.+ ...+.+.+|.+. ..+..+. .++..++
T Consensus 61 p~l~vw~i~k~~~---~~q~~v~P-------g~v~al~s~n~-G~~l~ag-~i~g~lYlWelssG~LL~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 61 PLLHVWEILKKDQ---VVQYIVLP-------GPVHALASSNL-GYFLLAG-TISGNLYLWELSSGILLNVLSAHYQSITC 128 (476)
T ss_pred ccccccccCchhh---hhhhcccc-------cceeeeecCCC-ceEEEee-cccCcEEEEEeccccHHHHHHhhccceeE
Confidence 3778888875422 11233322 23557888884 4444433 588999999874 3332221 1223344
Q ss_pred eeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc------cCCceeeeeeccCCCcEEEEEECCCC---cEEEEeCCCcEE
Q 017601 195 LNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK------ENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGADRTVT 265 (369)
Q Consensus 195 v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~------~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~D~~v~ 265 (369)
+.|. .|+..|+++|.||.|.+|++..- ...++++.+.+| +-+|+.+...+.| +|+++|.|++++
T Consensus 129 L~fs------~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 129 LKFS------DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred EEEe------CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCCccceEEEecCCceEE
Confidence 4444 36889999999999999987421 123677778877 7899999887765 999999999999
Q ss_pred EEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----------------CceeEEEEcCCCee
Q 017601 266 IYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----------------SSKVFAFRGDSNWL 329 (369)
Q Consensus 266 vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----------------~~~~~~~~g~~~~~ 329 (369)
+||+..+..+.++.- ...+.+++..| .++.++.|+.||.|.+.++.. +..+..+.||.+-.
T Consensus 202 ~wdlS~g~LLlti~f--p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITF--PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEeccceeeEEEec--CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 999999999888774 47899999999 899999999999999988754 23566677888422
Q ss_pred eeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 330 GFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 330 ~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++. +.||.+|++|++||.|.|||+.+.+.
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 4444 55999999999999999999988764
No 137
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=1.5e-16 Score=135.38 Aligned_cols=192 Identities=13% Similarity=0.024 Sum_probs=148.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeC--CcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQ--DIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
++-+.++.+++ +|.+| +.|.+..+|-. +..+-++. .|...+-.+. .+.+...+++++.|.+++|||+.++
T Consensus 13 lTqiKyN~eGD-LlFsc-aKD~~~~vw~s~nGerlGty~--GHtGavW~~D---id~~s~~liTGSAD~t~kLWDv~tG- 84 (327)
T KOG0643|consen 13 LTQIKYNREGD-LLFSC-AKDSTPTVWYSLNGERLGTYD--GHTGAVWCCD---IDWDSKHLITGSADQTAKLWDVETG- 84 (327)
T ss_pred cceEEecCCCc-EEEEe-cCCCCceEEEecCCceeeeec--CCCceEEEEE---ecCCcceeeeccccceeEEEEcCCC-
Confidence 34689998554 66777 89999999943 34443332 2444444443 2234578999999999999999999
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEe-----CCCcEEEEeCC-------CceeeeeccccccCceEEEEEcCCC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-----ADRTVTIYDPR-------RWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-----~D~~v~vwD~~-------~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
+++..+... .+|..+.|+++| +++... ..+.|.++|++ ..++...+..+ .+.++.+-|+| -
T Consensus 85 --k~la~~k~~--~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~-l 158 (327)
T KOG0643|consen 85 --KQLATWKTN--SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP-L 158 (327)
T ss_pred --cEEEEeecC--CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc-c
Confidence 899998876 999999999999 433332 24579999999 45678888888 89999999999 9
Q ss_pred CCEEEEEECCCeEEEEECcCC-ceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 296 SNYIYVQGVDYEVFCGQWRES-SKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+|++|..||.|..||++++ +.+..-+-|+ ..+.. ++|..+++++|.|.+-++||+.+-+
T Consensus 159 ~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 159 GETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE 223 (327)
T ss_pred CCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceEEecccCccceeeecccee
Confidence 999999999999999999997 4455556666 33433 5699999999999999999998754
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.6e-16 Score=138.20 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=150.0
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
.+.+++||.+. -++|++ |.|-+|+|||..+..+.-....|...++.+.+.+... .+.|+++++||.|.+||...-
T Consensus 43 ~~sitavAVs~---~~~aSG-ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 43 AGSITALAVSG---PYVASG-SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccceeEEEecc---eeEecc-CCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcCCe
Confidence 45577899865 467777 9999999999986655444455555565555432111 248999999999999999888
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..++.| .+.|+.++.+|.| +-++-+.|+++++||+-+|+....+.- +..-+.|.|+| .|.+++.++.+
T Consensus 118 ---~~~~slK~H-~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~-~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 118 ---ELLKSLKAH-KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNKATLVSWSP-QGDHFVVSGRN- 189 (362)
T ss_pred ---EEeeeeccc-ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc--CCcceeeEEcC-CCCEEEEEecc-
Confidence 788899877 6779999999999 667778899999999998877665542 23345599999 99988777654
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcccCCC
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALKGLVN 369 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~g~~~ 369 (369)
.|-+|.+.+......+.-..+..+ ..+-++..|++|.+|+.|.+||.... .....+.+|.|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~-~~~l~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~ 250 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILC-ATFLDGSELLVGGDNEWISLKDTDSD-TPLTEFLAHEN 250 (362)
T ss_pred EEEEEecccHhHhhhhhcccccee-eeecCCceEEEecCCceEEEeccCCC-ccceeeecchh
Confidence 688999887554444322221111 11338899999999999999998764 34555666654
No 139
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=1.3e-16 Score=142.47 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=146.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcc--eE----EE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEe
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LR----TL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD 223 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~----~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD 223 (369)
+..++|+|.++..||+| |.|.+|.||++... .+ .. ....|...+..++|+|..+ +.|++++.|.+|.|||
T Consensus 84 vLDi~w~PfnD~vIASg-SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASG-SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--NVLLSAGSDNTVSIWN 160 (472)
T ss_pred ccccccCccCCceeecC-CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--hhHhhccCCceEEEEe
Confidence 45799999999999998 99999999987521 11 11 2334667788888888654 6889999999999999
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+.++ ..+.++.|. +.|++++|+.|| +|++.+.|+.|+|||.|+++.+..-.+|....-..+-|-. ++. +++.
T Consensus 161 v~tg---eali~l~hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~-i~tT 233 (472)
T KOG0303|consen 161 VGTG---EALITLDHP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGK-IFTT 233 (472)
T ss_pred ccCC---ceeeecCCC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCc-eeee
Confidence 9999 677778766 999999999999 9999999999999999999999988888344556667777 787 4454
Q ss_pred E----CCCeEEEEECcCC-ce--eEEEEcCCCeeeeeE---cCCCCEEE-EEeCCCcEEEEECCCCc
Q 017601 303 G----VDYEVFCGQWRES-SK--VFAFRGDSNWLGFSK---CSNRDVLG-GWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s----~D~~i~vwd~~~~-~~--~~~~~g~~~~~~~~~---~~d~~~l~-sgs~dg~I~iWd~~~~~ 358 (369)
+ .++.+-+||..+- +. ...+..-+ ++.. -+|..+|+ +|-.|+.|+.|.+.+..
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 4778999998762 22 22232222 2222 23555544 67779999999986554
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.1e-17 Score=145.88 Aligned_cols=199 Identities=21% Similarity=0.263 Sum_probs=153.2
Q ss_pred CCCCeeEEEECCCCceeEEEEecccceEEEEeCC----cceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEE
Q 017601 147 GEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD----IHLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTI 221 (369)
Q Consensus 147 ~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~i 221 (369)
..++++++.|+|..+ ++.++ +.|++++||.++ ..++.++....|-....+. |+|. .+++++.-..+..
T Consensus 212 s~~~I~sv~FHp~~p-lllva-G~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~-----p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVA-GLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFA-----PNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CcCCceEEEecCCCc-eEEEe-cCCCcEEEEEecCccChhheeeeeccCccceeeec-----CCCceEEEecccceEEEE
Confidence 456788999999554 66777 899999999764 4556666555553322222 4565 6777777889999
Q ss_pred EeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 222 WDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
||+.+.+- ..+....+.....+..+..||++ +||..+..|.|.|.-..+++.+.+++- .+.|..+.|+. |++.|+
T Consensus 285 yDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~~~fsS-dsk~l~ 360 (514)
T KOG2055|consen 285 YDLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSDFTFSS-DSKELL 360 (514)
T ss_pred eecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--ccEEeeEEEec-CCcEEE
Confidence 99988721 22333333213467778889999 999999999999999999999999884 47899999998 999999
Q ss_pred EEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc--CCCCEEEEEeCCCcEEEEECCC
Q 017601 301 VQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC--SNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~--~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+++.+|.|.+||++...+++.|.......+...| .++.+||+||..|.|.|||..+
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 9999999999999999999999654433343444 5999999999999999999653
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.75 E-value=7.4e-16 Score=141.38 Aligned_cols=212 Identities=21% Similarity=0.210 Sum_probs=146.1
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-C--CCccc---ccc----------------
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-K--DVDRL---TYS---------------- 138 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~--~~~~~---~~~---------------- 138 (369)
..+.+... .|.+.|.++....++ .|.|+.+|..|..||-.-.. . +++.. ...
T Consensus 277 ~~~~k~~~-aH~ggv~~L~~lr~G-----tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 277 NRISKQVH-AHDGGVFSLCMLRDG-----TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred ceEEeEee-ecCCceEEEEEecCc-----cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 33334334 899999999998874 45559999999999832110 0 11100 000
Q ss_pred -ccC--------CCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCc
Q 017601 139 -VLP--------QDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 139 -~~~--------~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 209 (369)
+++ ...+++++-| +++.+|.+ .+++++ +-|+.++||+-.+...+........++.|. |.+ .
T Consensus 351 iL~Gt~~~~f~~~v~gh~delw-gla~hps~-~q~~T~-gqdk~v~lW~~~k~~wt~~~~d~~~~~~fh------psg-~ 420 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELW-GLATHPSK-NQLLTC-GQDKHVRLWNDHKLEWTKIIEDPAECADFH------PSG-V 420 (626)
T ss_pred EEEeeecCCceEEEEeccccee-eEEcCCCh-hheeec-cCcceEEEccCCceeEEEEecCceeEeecc------Ccc-e
Confidence 000 0112333345 79999954 567787 899999999955555554333222233332 334 7
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEIT 287 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~ 287 (369)
++.++..|...+.|..+. ..+. +... +.++++++|+|+| .||.|+.|+.|.||-+.. +........|+..+|+
T Consensus 421 va~Gt~~G~w~V~d~e~~---~lv~-~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQ---DLVT-IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred EEEeeccceEEEEecccc---eeEE-EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 777888999999999875 4443 3322 5899999999999 999999999999998765 5555555545468999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
.+.||+ |+++|.+.|.|..|.+|...
T Consensus 496 hLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 496 HLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EeeecC-CCceEEeccCceEEEEEccc
Confidence 999999 99999999999999999543
No 142
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-16 Score=153.46 Aligned_cols=230 Identities=12% Similarity=0.110 Sum_probs=170.8
Q ss_pred EEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcce--EEEE
Q 017601 110 VLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL--RTLR 187 (369)
Q Consensus 110 ~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~--~~~~ 187 (369)
+++.--.+-.++.|+...... + .+.+.+..-..-.....+++.++ -++....| +..|+|.+|+....+ .++.
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~---G-~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG-~S~G~Id~fNmQSGi~r~sf~ 487 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTS---G-RHVLDPKRFKKDDINATAVCVSF-CGNFVFIG-YSKGTIDRFNMQSGIHRKSFG 487 (910)
T ss_pred eeEEecCcceEEEEeccCccc---c-cEEecCccccccCcceEEEEEec-cCceEEEe-ccCCeEEEEEcccCeeecccc
Confidence 444444455677888875421 1 22222221111123356788887 44455555 788999999975332 2221
Q ss_pred -eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEE
Q 017601 188 -TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVT 265 (369)
Q Consensus 188 -~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~ 265 (369)
...|...+.-+.. +.-+..+++++.+|-+++||.... ..+..+... ..+.++..+-.. .+|.+..|-.|.
T Consensus 488 ~~~ah~~~V~gla~---D~~n~~~vsa~~~Gilkfw~f~~k---~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAV---DGTNRLLVSAGADGILKFWDFKKK---VLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred cCccccCceeEEEe---cCCCceEEEccCcceEEEEecCCc---ceeeeeccC--CCcceeeeeehhhhhhhhcCceeEE
Confidence 1224445554442 112356889999999999999987 566666655 788888888888 999999999999
Q ss_pred EEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 266 IYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 266 vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
++|+.+.+.++.|.|| .+.|++++||| ||+.|+++++|++||+||+.++.++-.+.-......+..+|+|++||+...
T Consensus 560 vvD~~t~kvvR~f~gh-~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGH-GNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEchhhhhhHHhhcc-ccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEe
Confidence 9999999999999999 99999999999 999999999999999999999999998877665567777899999999999
Q ss_pred C-CcEEEEECC
Q 017601 346 S-GSIFVADVV 355 (369)
Q Consensus 346 d-g~I~iWd~~ 355 (369)
| .-|++|--+
T Consensus 638 d~~gIylWsNk 648 (910)
T KOG1539|consen 638 DQNGIYLWSNK 648 (910)
T ss_pred cCceEEEEEch
Confidence 9 789999643
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=2.3e-16 Score=143.21 Aligned_cols=252 Identities=15% Similarity=0.128 Sum_probs=170.0
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
+-..+|.+.|.+|.|+|.+ ...+.+.+.+|.++.-|+...-. ..-+... ..+.+++++.|+..+...++
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n---~s~i~ssSyDGtiR~~D~~~~i~---e~v~s~~-----~d~~~fs~~d~~~e~~~vl~ 296 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPAN---TSQIYSSSYDGTIRLQDFEGNIS---EEVLSLD-----TDNIWFSSLDFSAESRSVLF 296 (498)
T ss_pred EEeccCCccccceEecCCC---hhheeeeccCceeeeeeecchhh---HHHhhcC-----ccceeeeeccccCCCccEEE
Confidence 3357899999999999975 56788889999999999875421 1011111 11234667889886665555
Q ss_pred EEecccceEEEEeCCcceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc--eeeeeeccCCC
Q 017601 166 VARSFSKSIDVYDQDIHLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG--CLHRICGSVGD 242 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~--~~~~~~~~~~~ 242 (369)
.. -++ ...+||.......+. ..-|...+..++..|..| ..|+++|-|++++|||+|.-.... .+..+.|. .
T Consensus 297 ~~-~~G-~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr--r 370 (498)
T KOG4328|consen 297 GD-NVG-NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR--R 370 (498)
T ss_pred ee-ccc-ceEEEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceeccccc--c
Confidence 44 444 888999753222111 111334566666555544 578889999999999999642222 25556555 8
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCC----Cceeeeecccccc----CceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPR----RWSALSRWVHCSK----YEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~----~~~~~~~~~~h~~----~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
.|++..|||.+ .|++-+.|..|+|||.. .-.+..++..... -......|.| +..++++|-.-..|-|+|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCC-CccEEEEeccCcceeEEcC
Confidence 99999999999 99999999999999984 3344444432101 1245678999 9999999999999999999
Q ss_pred cCCceeEEEEcCC--CeeeeeE-cCCCC-EEEEEeCCCcEEEEECC
Q 017601 314 RESSKVFAFRGDS--NWLGFSK-CSNRD-VLGGWSDSGSIFVADVV 355 (369)
Q Consensus 314 ~~~~~~~~~~g~~--~~~~~~~-~~d~~-~l~sgs~dg~I~iWd~~ 355 (369)
..++.+..+.+.. ..-++.. -|-+. +++.++..|.|+||--+
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 8888777764432 0011222 23344 67777788999999654
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=9.6e-16 Score=145.10 Aligned_cols=244 Identities=13% Similarity=0.041 Sum_probs=167.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
.+|.++||+.++ ..||.+-.+|.|.+|++...- -....+.. .....+.+++|++ + ..+.+. +.++
T Consensus 26 s~I~slA~s~kS----~~lAvsRt~g~IEiwN~~~~w----~~~~vi~g----~~drsIE~L~W~e-~-~RLFS~-g~sg 90 (691)
T KOG2048|consen 26 SEIVSLAYSHKS----NQLAVSRTDGNIEIWNLSNNW----FLEPVIHG----PEDRSIESLAWAE-G-GRLFSS-GLSG 90 (691)
T ss_pred cceEEEEEeccC----CceeeeccCCcEEEEccCCCc----eeeEEEec----CCCCceeeEEEcc-C-CeEEee-cCCc
Confidence 789999999874 568988999999999997541 11111111 1122355899996 3 456666 7899
Q ss_pred eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-eccCCCcEEEEEECC
Q 017601 173 SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGSVGDILYAVCSSS 251 (369)
Q Consensus 173 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~~~~~v~~v~~sp 251 (369)
+|.-||+....+..........+-.+. ..|.+..++.+++||.+.+++...+ ...... -....+.|.+++|+|
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsia---i~p~~~~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIA---INPENTILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEE---eCCccceEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecC
Confidence 999999875544443322222232222 1233344555669997777776654 333221 122148999999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeecc----cc---ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWV----HC---SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~----~h---~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
++ .|+.|+.||.|++||..++..++... +- ..--|++|.|=. + ..|++|-.-|+|.+||...+.++..+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEEEcccCcchhhhhh
Confidence 99 89999999999999999987766211 11 023477887764 4 578999999999999999999988887
Q ss_pred cCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 324 GDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 324 g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|. ....+...++++.+++++.|+.|.-+...+++.
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 765 113333345789999999999999998887754
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.4e-16 Score=141.50 Aligned_cols=239 Identities=18% Similarity=0.226 Sum_probs=174.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
+-.|++.+|.|++ ..++++.+..--++.||+.+....--...+ +..+.++.....+|.+ .+||.. +..
T Consensus 257 ~fPi~~a~f~p~G---~~~i~~s~rrky~ysyDle~ak~~k~~~~~-------g~e~~~~e~FeVShd~-~fia~~-G~~ 324 (514)
T KOG2055|consen 257 KFPIQKAEFAPNG---HSVIFTSGRRKYLYSYDLETAKVTKLKPPY-------GVEEKSMERFEVSHDS-NFIAIA-GNN 324 (514)
T ss_pred cCccceeeecCCC---ceEEEecccceEEEEeeccccccccccCCC-------CcccchhheeEecCCC-CeEEEc-ccC
Confidence 4678999999985 458888888888999999765211101111 1112334457788854 577877 789
Q ss_pred ceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
|.|.|.-.. ..+.+++.......+.|. .|+..|++++.+|.|.+||+++. .+++++.....-.=+++|.
T Consensus 325 G~I~lLhakT~eli~s~KieG~v~~~~fs------Sdsk~l~~~~~~GeV~v~nl~~~---~~~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFKIEGVVSDFTFS------SDSKELLASGGTGEVYVWNLRQN---SCLHRFVDDGSVHGTSLCI 395 (514)
T ss_pred ceEEeehhhhhhhhheeeeccEEeeEEEe------cCCcEEEEEcCCceEEEEecCCc---ceEEEEeecCccceeeeee
Confidence 999998643 444555444334445554 35788999999999999999998 8999988661233466788
Q ss_pred CCCC-cEEEEeCCCcEEEEeCCC------ceeeeeccccccCceEEEEEcCCCCCEEEEEEC--CCeEEEEECcCCceeE
Q 017601 250 SSTG-NIAVAGADRTVTIYDPRR------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV--DYEVFCGQWRESSKVF 320 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~~------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~--D~~i~vwd~~~~~~~~ 320 (369)
|++| +||+||..|.|.|||..+ .+++.++..- ...|+++.|+| |.++||-+|. +..+|+--+.......
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeec
Confidence 9999 999999999999999654 5667777766 78899999999 9999887764 6789988776533322
Q ss_pred EE------EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 321 AF------RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 321 ~~------~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.| -||. .++..+|.+.++|-|.++|.+.+|.+.
T Consensus 474 NfP~~n~~vg~v--tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHV--TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccce--EEEEecCCCceEEeecCCCceeeEeec
Confidence 22 2344 556668899999999999999999874
No 146
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-15 Score=146.77 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=142.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
|...|.+++-.. ..+++++.++.|.++....+..+--...+.++ ...++|+. ++.++|.+ |.
T Consensus 55 ~g~~v~~ia~~s------~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp----------~r~~~v~g-~g~~iaag-sd 116 (933)
T KOG1274|consen 55 SGELVSSIACYS------NHFLTGSEQNTVLRYKFPSGEEDTILARFTLP----------IRDLAVSG-SGKMIAAG-SD 116 (933)
T ss_pred cCceeEEEeecc------cceEEeeccceEEEeeCCCCCccceeeeeecc----------ceEEEEec-CCcEEEee-cC
Confidence 778888888643 36777788889999888755321101112221 34689988 45677777 99
Q ss_pred cceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-------C
Q 017601 171 SKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-------G 241 (369)
Q Consensus 171 d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-------~ 241 (369)
|-.|++-+... ..+.++. +...+..+.+ +|.+..|++.+-||+|+|||+.++ .+.+++.+-. .
T Consensus 117 D~~vK~~~~~D~s~~~~lrg--h~apVl~l~~---~p~~~fLAvss~dG~v~iw~~~~~---~~~~tl~~v~k~n~~~~s 188 (933)
T KOG1274|consen 117 DTAVKLLNLDDSSQEKVLRG--HDAPVLQLSY---DPKGNFLAVSSCDGKVQIWDLQDG---ILSKTLTGVDKDNEFILS 188 (933)
T ss_pred ceeEEEEeccccchheeecc--cCCceeeeeE---cCCCCEEEEEecCceEEEEEcccc---hhhhhcccCCcccccccc
Confidence 99999998753 3444443 3333444442 345656666778999999999987 5555443210 2
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccc-cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVH-CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~-h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
..+.-++|+|+| .++..+.|+.|++|+...|+....+.. ++...+..+.|+| +|.|||+++.||.|.|||+++
T Consensus 189 ~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 189 RICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEeccc
Confidence 345667999998 999999999999999999999888774 2144599999999 999999999999999999986
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.1e-16 Score=135.79 Aligned_cols=193 Identities=18% Similarity=0.169 Sum_probs=142.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCc-------ceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEE
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-------HLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTI 221 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~i 221 (369)
.+++++|+. ++..+|++ +.|++|+|||+.. .++.--...||+.+.|.+ |.. .++++-...++++
T Consensus 88 ~vt~~~FsS-dGK~lat~-~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap------Dc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 88 EVTDVAFSS-DGKKLATI-SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP------DCKSVVVSVKRGNKLCV 159 (420)
T ss_pred ceeeeEEcC-CCceeEEE-eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC------CcceEEEEEccCCEEEE
Confidence 467999999 55678988 8999999999752 222222344777777765 344 4455667789999
Q ss_pred EeCCcccCCceeeeeec--------cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEc
Q 017601 222 WDLRMKENGGCLHRICG--------SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 222 wD~~~~~~~~~~~~~~~--------~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~s 292 (369)
|-+...+.++--..+.+ .+...+-.+-..-++ +|++++.|.+|.+||++ |+.+..+... +..-+..+.|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aavS 237 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAVS 237 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceeeC
Confidence 98765443332222111 102445556555666 99999999999999998 9999888877 6777889999
Q ss_pred CCCCCEEEEEECCCeEEEEECcC--------CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 293 SIDSNYIYVQGVDYEVFCGQWRE--------SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd~~~--------~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
| +|+++++++.--.|++|.+-- -...+.++||. ..+.. +++...+++.|.||+++|||..
T Consensus 238 P-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 238 P-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred C-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9 999999999999999998732 24567788998 44433 5588999999999999999964
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=144.26 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=146.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcce---EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHL---RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+.++||+. +.+.+|++ -.++.|.||++...- ..++. .....+.-+.|. ++++|.+.+-+|.|.-||+.+.
T Consensus 28 I~slA~s~-kS~~lAvs-Rt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 28 IVSLAYSH-KSNQLAVS-RTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eEEEEEec-cCCceeee-ccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEc----cCCeEEeecCCceEEEEecccC
Confidence 56899998 45678888 689999999986322 22222 122344444442 3789999999999999999998
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--eccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS--RWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~--~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
++...+... ++.|+++|.+|.+ .++.|++||.+..++...++... .|.-. ++.|.+++|+| ++..+++|+.
T Consensus 101 ---k~~~~~d~~-gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq-~sRvLslsw~~-~~~~i~~Gs~ 174 (691)
T KOG2048|consen 101 ---KQKYNIDSN-GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ-KSRVLSLSWNP-TGTKIAGGSI 174 (691)
T ss_pred ---ceeEEecCC-CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-cceEEEEEecC-CccEEEeccc
Confidence 777777655 7999999999999 99999999988888887776654 33344 68999999999 9999999999
Q ss_pred CCeEEEEECcCCceeEEEEcC----CC-----eeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 305 DYEVFCGQWRESSKVFAFRGD----SN-----WLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~----~~-----~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
||.|++||...+..+...... .. ..++..+ ....|++|..-|+|++||...+.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcc
Confidence 999999999987666633211 10 0111112 45689999999999999998875
No 149
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=8.2e-16 Score=132.40 Aligned_cols=218 Identities=12% Similarity=0.129 Sum_probs=152.1
Q ss_pred CCccceeeEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 89 CPHRSEVQSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..|.-.++.+-|.|+.. --..+||+.+. .+++|.+......... .-.+..+.....-...++..|+..++.++.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~-~~~L~~~kns~~~aPlTSFDWne~dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVEL-QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceeh-hhhhccCcccccCCcccccccccCCcceeEee
Confidence 57889999999999852 12367777665 6889988754221111 01111111111112356788998889998888
Q ss_pred ecccceEEEEeCCcc----eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQDIH----LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
|-|.+..|||+... +++ +...|...+-.+.+... .-+.|+++|.||.||+||+|..+-...+..-... ..+
T Consensus 170 -SiDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~--s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~-~~p 244 (364)
T KOG0290|consen 170 -SIDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKG--SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP-STP 244 (364)
T ss_pred -cccCeEEEEEEeeccccceee-EEEecCcceeEEEeccC--ccceEEEecCCCcEEEEEecccccceEEecCCCC-CCc
Confidence 99999999998653 222 23334444333333221 1257888999999999999987432333222111 367
Q ss_pred EEEEEECCCC--cEEEEe-CCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 244 LYAVCSSSTG--NIAVAG-ADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~sp~g--~lasgs-~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
..-++|+++. ++|+-. ....|.|.|+|. ..++.++.+| +..|++++|.|+...+|+|+|.|..+.+||+..
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 8889999988 777744 445789999998 6788999999 999999999999999999999999999999976
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6e-16 Score=134.17 Aligned_cols=228 Identities=12% Similarity=0.050 Sum_probs=151.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCcee-EEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSM-AAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-~a~ 166 (369)
...|.+.|..|.|.+.+ -+.++|+++-|+++.||.-.....+..+..+... ....-....++.+.|.|..-++ +|+
T Consensus 55 Wrah~~Si~rV~WAhPE--fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPE--FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred EEecCCcEEEEEecCcc--ccceEEEEecCCceeeeeecccccccccceeEEE-EEeecCCcceeEEEecchhcceEEEE
Confidence 45799999999998876 4689999999999999987533222222222110 0111123457799999965554 566
Q ss_pred EecccceEEEEeCCcc--eEE------EE-----eeeCCcceeeeccCCCCCCCCcEEEEEcCC------eEEEEeCCcc
Q 017601 167 ARSFSKSIDVYDQDIH--LRT------LR-----TLWYPSSLNFVQNLSPVNGGPNMLAVTEGC------QLTIWDLRMK 227 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~~--~~~------~~-----~~~~~~~v~~~~~~~~~~~~~~lla~s~d~------~v~iwD~~~~ 227 (369)
+ +.||.+|||+.... .+. ++ ...+.....++.+.+- --...+++++.|. .++||.....
T Consensus 132 ~-~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s-r~~~p~iAvgs~e~a~~~~~~~Iye~~e~ 209 (361)
T KOG2445|consen 132 A-SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPS-RMHEPLIAVGSDEDAPHLNKVKIYEYNEN 209 (361)
T ss_pred e-ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccc-cccCceEEEEcccCCccccceEEEEecCC
Confidence 6 99999999986321 111 11 0011122222222211 1123456655554 8999987654
Q ss_pred c-CCceeeeeeccCCCcEEEEEECCCC-----cEEEEeCCCcEEEEeCCC--------------------ceeeeecccc
Q 017601 228 E-NGGCLHRICGSVGDILYAVCSSSTG-----NIAVAGADRTVTIYDPRR--------------------WSALSRWVHC 281 (369)
Q Consensus 228 ~-~~~~~~~~~~~~~~~v~~v~~sp~g-----~lasgs~D~~v~vwD~~~--------------------~~~~~~~~~h 281 (369)
. +...+..+.++ +.+|+.++|.|+- .||+|+.|| |+||.++. -+.+..+.+|
T Consensus 210 ~rKw~kva~L~d~-~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 210 GRKWLKVAELPDH-TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred cceeeeehhcCCC-CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 2 22344556665 7999999999985 789999999 99999872 1234557789
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC---CceeEEEEc
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE---SSKVFAFRG 324 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~---~~~~~~~~g 324 (369)
+.+|..+.|+= .|..|+|.|.||.||+|...- -+|...+..
T Consensus 288 -~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 288 -NGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred -CCceEEEEEee-eeeEEeecCCCceeeehhhhhhhhheeeeEEec
Confidence 99999999998 999999999999999997653 345555543
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.1e-16 Score=136.34 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=132.7
Q ss_pred eeEEEEecccceEEEEeCCc--ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee--
Q 017601 162 SMAAVARSFSKSIDVYDQDI--HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-- 236 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-- 236 (369)
..+|++ -..++|++||... .++.+.... ....+.|+... ....+++++.||+|++||+|+. ....++
T Consensus 41 ~~vav~-lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d----s~h~v~s~ssDG~Vr~wD~Rs~---~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVS-LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD----SPHGVISCSSDGTVRLWDIRSQ---AESARISW 112 (376)
T ss_pred eeEEEE-ecCCeEEEEeccchhhhheecCCCCcccceEEecCC----CCCeeEEeccCCeEEEEEeecc---hhhhheec
Confidence 467777 7789999999764 444443322 22455666531 2357888999999999999987 333333
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeC----CCcEEEEeCCCcee-eeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGA----DRTVTIYDPRRWSA-LSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~----D~~v~vwD~~~~~~-~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
..+.+.+..|++.+-.+ .+++|.. |-.|.+||+|..+. +..+. .| .+.|++|.|+|.++++|+|||.||-|.
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEE
Confidence 23313577788877666 7777753 67899999999765 66655 67 999999999999999999999999999
Q ss_pred EEECcCC----ceeEEEEcCCCeeeeeEcCCC-CEEEEEeCCCcEEEEECCCCcc
Q 017601 310 CGQWRES----SKVFAFRGDSNWLGFSKCSNR-DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 310 vwd~~~~----~~~~~~~g~~~~~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++|++.. .++.++.--+....+....++ +.|.+-+..++..+|+++.+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9999763 233444222211122222233 4699999999999999998864
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1e-15 Score=131.65 Aligned_cols=208 Identities=15% Similarity=0.160 Sum_probs=145.8
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECC-CCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSP-SQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-~~~~~~a~~~ 168 (369)
.|-+.|+|+.|.|++ ..+++.+ +-+|-+|+++.+.. + ...+.......++-.+++-+|+| .+...+++.
T Consensus 121 eavg~i~cvew~Pns----~klasm~-dn~i~l~~l~ess~-~---vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS----DKLASMD-DNNIVLWSLDESSK-I---VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred HHhCceeeEEEcCCC----CeeEEec-cCceEEEEcccCcc-h---heeecccccccccceecccccCCCCccceEEEe-
Confidence 355799999999973 6777777 56899999987632 1 11111111111222356788999 455666765
Q ss_pred cccceEEEEeCCcceEEEEeee-CCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
.|+++..||.....+...... |...+..+. |+|+.+ .|+++++||.|+|||.|..+ .+++.+.+| ...|++
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD---fNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H-sHWvW~ 263 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD---FNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH-SHWVWA 263 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhhcceeeecc---CCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC-ceEEEE
Confidence 689999999863322222111 222333333 344444 45668899999999999764 678888877 789999
Q ss_pred EEECCCC--cEEEEeCCCcEEEEeCCC-----------------------------ceeeeeccccccCceEEEEEcCCC
Q 017601 247 VCSSSTG--NIAVAGADRTVTIYDPRR-----------------------------WSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 247 v~~sp~g--~lasgs~D~~v~vwD~~~-----------------------------~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
+.|+|.- +|.+|+.|..|.+|-... ...+.++..| .+.|++++||..|
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCC
Confidence 9999987 889999999999996532 0123456778 9999999999989
Q ss_pred CCEEEEEECCCeEEEEECcC
Q 017601 296 SNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~ 315 (369)
+=.+||-|.||++.|=.+..
T Consensus 343 PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred CeeEEEeccCceEEeecCCh
Confidence 99999999999998866543
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.70 E-value=6.8e-16 Score=146.78 Aligned_cols=242 Identities=16% Similarity=0.099 Sum_probs=170.5
Q ss_pred EEEEEEeCCchhhhcCC-CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCC
Q 017601 53 LYKLQVMMDDWFVSEGK-DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKD 131 (369)
Q Consensus 53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~ 131 (369)
+..++|++.+..++.|. .+.++.-+.+..+ .....-.|..||.|+.||... -..++||+++.+.-|+++|+.....-
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCch-hhhHhhhhccCCceEEEEecccccch
Confidence 34566666666666665 3455554444443 223345899999999998542 23589999999999999999754321
Q ss_pred CccccccccCCCCCCCCCCeeEEEECCCCc-eeEEEEecccceEEEEeCCcc---eEEE-Eeee--CCcceeeeccCCCC
Q 017601 132 VDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAVARSFSKSIDVYDQDIH---LRTL-RTLW--YPSSLNFVQNLSPV 204 (369)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~~~s~d~~i~lwd~~~~---~~~~-~~~~--~~~~v~~~~~~~~~ 204 (369)
+ ..+..|. ..++++.|--.+. ...++| +.|+.|.. +..+. .+.+ +..+ ..+.+-.+. ..
T Consensus 540 ~----qtld~HS-----ssITsvKFa~~gln~~Misc-GADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~---Vd 605 (1080)
T KOG1408|consen 540 V----QTLDGHS-----SSITSVKFACNGLNRKMISC-GADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMA---VD 605 (1080)
T ss_pred h----hhhcccc-----cceeEEEEeecCCceEEEec-cCchhhhe-ehhccccCceeccccccccccceEEEee---eC
Confidence 1 1122222 3466888877553 345666 88998743 33211 1111 1111 112222222 23
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
|....+++++.|..|+|||+..+ +.++.|++.. .+..--+...|.| +||+...|+++.++|.-+++++.+..||
T Consensus 606 p~~k~v~t~cQDrnirif~i~sg---Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 606 PTSKLVVTVCQDRNIRIFDIESG---KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCcceEEEEecccceEEEecccc---ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 44568889999999999999998 7888887532 3556678899999 9999999999999999999999999999
Q ss_pred ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 282 SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 282 ~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...|+.+.|.+ |-++|+|.+.|+.|.||.+..
T Consensus 683 -sE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 -SEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -chheeeeeecc-cchhheeecCCceEEEEECch
Confidence 99999999999 999999999999999999754
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.8e-15 Score=139.33 Aligned_cols=319 Identities=15% Similarity=0.115 Sum_probs=196.9
Q ss_pred ceeeeecCCccccC-CCCCccc--cceeEEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcC-CCccccccCcccccc
Q 017601 8 SLRKAEVPLSLIEN-PSPGNIQ--CTRLALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEG-KDSLLIPEQTPVMDS 83 (369)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~--~~r~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (369)
..|.-.=|.+|++. |+|.++. .++.++ +|..--+.|..|.+.+.+.++..| +++.++.+.+.++..
T Consensus 365 K~rlniDpe~LiPkLPsp~dLrPFPt~~~l----------vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc 434 (733)
T KOG0650|consen 365 KMRLNIDPESLIPKLPSPKDLRPFPTRCAL----------VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC 434 (733)
T ss_pred cceecCCHHHhcccCCChhhcCCCcceeee----------eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE
Confidence 33444446666644 6776652 344333 444555566677888888888555 477776666655542
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc---ccccC-----------CCCC---C
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT---YSVLP-----------QDCG---V 146 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~---~~~~~-----------~~~~---~ 146 (369)
+..+...++|.||+|+|... ..+||.+-. .++.+.+..-+........ +.-.+ .... .
T Consensus 435 --vr~~~~d~~I~~vaw~P~~~--~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 435 --VRTVQFDSEIRSVAWNPLSD--LCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred --EEEEeecceeEEEEecCCCC--ceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhh
Confidence 22445568999999999742 234433322 2355544332210000000 00000 0000 0
Q ss_pred CCC----------CeeEEEECCCCceeEEEEe--cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE
Q 017601 147 GEG----------SWSGLCFSPSQWSMAAVAR--SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT 214 (369)
Q Consensus 147 ~~~----------~~~~l~~~p~~~~~~a~~~--s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s 214 (369)
.+. .+..+.|+..++ +||+.. +..+.|-|.++.+.............+.++.++|..+ +|+. +
T Consensus 510 ~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p---~lfV-a 584 (733)
T KOG0650|consen 510 LEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP---YLFV-A 584 (733)
T ss_pred hccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCc---eEEE-E
Confidence 111 245688888555 444431 3456788888765433221111222333333333322 4444 4
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEc
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~s 292 (369)
....|+|||+..+ ..++.+... ...|.+++.+|.| .|+.|+.|+.+..||+.- .++.+++..| ...+++|+|+
T Consensus 585 Tq~~vRiYdL~kq---elvKkL~tg-~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H 659 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQ---ELVKKLLTG-SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFH 659 (733)
T ss_pred eccceEEEehhHH---HHHHHHhcC-CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhc
Confidence 4578999999876 555554432 3789999999999 999999999999999976 5678889999 9999999999
Q ss_pred CCCCCEEEEEECCCeEEEEE------CcCC---ceeEEEEcCCCe--eeeeE---cCCCCEEEEEeCCCcEEEE
Q 017601 293 SIDSNYIYVQGVDYEVFCGQ------WRES---SKVFAFRGDSNW--LGFSK---CSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 293 p~d~~~l~s~s~D~~i~vwd------~~~~---~~~~~~~g~~~~--~~~~~---~~d~~~l~sgs~dg~I~iW 352 (369)
+ .-.+++||+.|+++.|+- +-.+ -.+..++||..- .++.. -|...+|++++.||+|++|
T Consensus 660 ~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 660 K-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred c-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9 778899999999999984 3222 345667888732 22332 3477899999999999998
No 155
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-14 Score=138.33 Aligned_cols=264 Identities=16% Similarity=0.145 Sum_probs=185.2
Q ss_pred EEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEE
Q 017601 44 FVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS 123 (369)
Q Consensus 44 ~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~ 123 (369)
++|.|+|..||..+ .|+. ......+|.+.|.-+..-. .-+.++|.++.+++|
T Consensus 88 ~vy~A~g~~i~~~~---------rgk~-------------i~~~~~~~~a~v~~l~~fG------e~lia~d~~~~l~vw 139 (910)
T KOG1539|consen 88 YVYVASGNKIYAYA---------RGKH-------------IRHTTLLHGAKVHLLLPFG------EHLIAVDISNILFVW 139 (910)
T ss_pred eEEEecCcEEEEEE---------ccce-------------EEEEeccccceEEEEeeec------ceEEEEEccCcEEEE
Confidence 57888888887776 1211 1122446777777665432 367778889999999
Q ss_pred EecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeecc
Q 017601 124 KLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQN 200 (369)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~ 200 (369)
+......+... ...+. ......+++ -+||. -=+.++++ +.+|.++||++. +.+.+++. ....++.+..
T Consensus 140 ~~s~~~~e~~l-~~~~~----~~~~~~Ita-l~HP~TYLNKIvvG-s~~G~lql~Nvrt~K~v~~f~~--~~s~IT~ieq 210 (910)
T KOG1539|consen 140 KTSSIQEELYL-QSTFL----KVEGDFITA-LLHPSTYLNKIVVG-SSQGRLQLWNVRTGKVVYTFQE--FFSRITAIEQ 210 (910)
T ss_pred Eeccccccccc-cceee----eccCCceee-EecchhheeeEEEe-ecCCcEEEEEeccCcEEEEecc--cccceeEecc
Confidence 98763111100 00010 011112443 35663 22457777 899999999986 44444432 3466666664
Q ss_pred CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec
Q 017601 201 LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 201 ~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
.|. =..++.+..+|+|.|++++.+ +.+..|++. .++|++++|..|| .+|+|+..|.+.+||+...+.+..+
T Consensus 211 sPa---LDVVaiG~~~G~ViifNlK~d---kil~sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 211 SPA---LDVVAIGLENGTVIIFNLKFD---KILMSFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred CCc---ceEEEEeccCceEEEEEcccC---cEEEEEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 331 124445668999999999998 889999875 6999999999999 9999999999999999998888776
Q ss_pred c-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----CceeEEEEcCCCeeeee---E-cCCCCEEEEEeCCCcE
Q 017601 279 V-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SSKVFAFRGDSNWLGFS---K-CSNRDVLGGWSDSGSI 349 (369)
Q Consensus 279 ~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~~~~~~~g~~~~~~~~---~-~~d~~~l~sgs~dg~I 349 (369)
. .| .+.|+...|-| ....+++++.|+.+++|=.++ .+.++.-.||+ .+-. . -.+|.++.+++.|++.
T Consensus 284 ~nah-~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs--~Pp~~irfy~~~g~~ilsa~~Drt~ 359 (910)
T KOG1539|consen 284 RNAH-YGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS--APPSCIRFYGSQGHFILSAKQDRTL 359 (910)
T ss_pred eccc-cCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCC--CCchheeeeccCcEEEEecccCcch
Confidence 6 67 89999999999 888999999999988886654 25666667887 3222 2 2378999999999999
Q ss_pred EEEECC
Q 017601 350 FVADVV 355 (369)
Q Consensus 350 ~iWd~~ 355 (369)
+.+++.
T Consensus 360 r~fs~~ 365 (910)
T KOG1539|consen 360 RSFSVI 365 (910)
T ss_pred hhhhhh
Confidence 888764
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=2.3e-15 Score=131.61 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=117.8
Q ss_pred eeEEEECC----CCceeEEEEecccceEEEEeCC--cceEEEEeeeCC---cceeeeccCCCCCC-CCcEEEEEcCCeEE
Q 017601 151 WSGLCFSP----SQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYP---SSLNFVQNLSPVNG-GPNMLAVTEGCQLT 220 (369)
Q Consensus 151 ~~~l~~~p----~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~---~~v~~~~~~~~~~~-~~~lla~s~d~~v~ 220 (369)
+.+++|++ +.++.+|+.+ ...+.+|+.. ..++.++....+ ...-.+.+.--..+ +..+++++.-|.|+
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr 118 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVG--GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR 118 (385)
T ss_pred cceeeeehhcCCCCCceEEEeC--CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence 44788874 2445677663 3567888643 333555443322 22212222211222 34566677889999
Q ss_pred EEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeec---cccccCceEEEEEcCCC
Q 017601 221 IWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRW---VHCSKYEITGLSFSSID 295 (369)
Q Consensus 221 iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~---~~h~~~~v~~l~~sp~d 295 (369)
|.|+.++ ++...+.+| +..|+.+.|.|+. +++++|.|.+|++||+++..++..+ .+| .++|.++.|++ +
T Consensus 119 Vid~~~~---~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~-~ 192 (385)
T KOG1034|consen 119 VIDVVSG---QCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSL-D 192 (385)
T ss_pred EEecchh---hhccceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc-cCcEEEEEEcC-C
Confidence 9999988 888888888 8999999999999 8999999999999999999887765 579 99999999999 9
Q ss_pred CCEEEEEECCCeEEEEECc
Q 017601 296 SNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~ 314 (369)
+.+++|+|+|..+++|++.
T Consensus 193 gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred CCeeeccCCcceEEEEecC
Confidence 9999999999999999987
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.9e-14 Score=125.32 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=189.2
Q ss_pred EEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEE
Q 017601 33 ALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLG 112 (369)
Q Consensus 33 ~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~la 112 (369)
.++|++-| -|+|.|+.-+++- |++ ..+-.+.++ +.+|...|++++||+|+ ..|.
T Consensus 28 ~~~Fs~~G----~~lAvGc~nG~vv----------------I~D-~~T~~iar~-lsaH~~pi~sl~WS~dg----r~Ll 81 (405)
T KOG1273|consen 28 CCQFSRWG----DYLAVGCANGRVV----------------IYD-FDTFRIARM-LSAHVRPITSLCWSRDG----RKLL 81 (405)
T ss_pred eEEeccCc----ceeeeeccCCcEE----------------EEE-ccccchhhh-hhccccceeEEEecCCC----CEee
Confidence 46677766 5889887544433 322 111111121 56899999999999984 6777
Q ss_pred EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCC
Q 017601 113 SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYP 192 (369)
Q Consensus 113 s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~ 192 (369)
+.+.+-.+.+||+..+.. .....+. ..+.++.|+|.+.+.++++ -.+..-.+-+....+..+-.....
T Consensus 82 tsS~D~si~lwDl~~gs~---l~rirf~--------spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSP---LKRIRFD--------SPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred eecCCceeEEEeccCCCc---eeEEEcc--------CccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCc
Confidence 888888999999986631 1111111 1244799999877776666 566655555555444444333333
Q ss_pred cceeeecc-CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC
Q 017601 193 SSLNFVQN-LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR 270 (369)
Q Consensus 193 ~~v~~~~~-~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~ 270 (369)
...+..+. ..|.+.|.+++++..-|.+.++|..+- +++..+.-.....|..+-|+..| .|+.-..|+.|+.|+++
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 33333332 234466789999999999999999988 78877765423788899999999 99999999999999987
Q ss_pred C-------cee--eeecccc-ccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcCCceeEEEEcCCC--eeeeeEcCCC
Q 017601 271 R-------WSA--LSRWVHC-SKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRESSKVFAFRGDSN--WLGFSKCSNR 337 (369)
Q Consensus 271 ~-------~~~--~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~~~~~~~~~g~~~--~~~~~~~~d~ 337 (369)
. +++ .++++.- .+-.-.++.||. +|.++..++. -..++||.-..|.+++.+.|... ...+..-+-.
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 3 111 2222211 023456789999 9999887764 45899999999999999977541 0111112233
Q ss_pred CEEEEEeCCCcEEEEECCCCcc
Q 017601 338 DVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..|++- ..|.|+||.....++
T Consensus 306 p~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 306 PIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeec-cCCceEEEEeecccc
Confidence 456666 789999998876554
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=126.65 Aligned_cols=236 Identities=16% Similarity=0.192 Sum_probs=163.8
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
+.-|.|++|.+++ -+.++|++|+|.+|+.... ...+.+..| ++|+.+++.-. ++.++++ +.|
T Consensus 246 kk~Vl~v~F~eng-----dviTgDS~G~i~Iw~~~~~-----~~~k~~~aH-----~ggv~~L~~lr--~GtllSG-gKD 307 (626)
T KOG2106|consen 246 KKFVLCVTFLENG-----DVITGDSGGNILIWSKGTN-----RISKQVHAH-----DGGVFSLCMLR--DGTLLSG-GKD 307 (626)
T ss_pred ceEEEEEEEcCCC-----CEEeecCCceEEEEeCCCc-----eEEeEeeec-----CCceEEEEEec--CccEeec-Ccc
Confidence 3789999999974 5778999999999998543 112223233 45666788876 3456676 999
Q ss_pred ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 172 KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
+.|.+||.. .++++...-|...-++.... +..+-|+.+...+.|--=.+..+ -.+. ..+| +.....++.+|
T Consensus 308 Rki~~Wd~~--y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~---f~~~-v~gh-~delwgla~hp 378 (626)
T KOG2106|consen 308 RKIILWDDN--YRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENG---FTLT-VQGH-GDELWGLATHP 378 (626)
T ss_pred ceEEecccc--ccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCC---ceEE-EEec-ccceeeEEcCC
Confidence 999999943 22222222222211221111 11233666666666655555544 3333 3444 57899999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee
Q 017601 252 TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG 330 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~ 330 (369)
+. ++++++.|+.+++|+ ..+++-+.. ..+++.++.|+| .| .+|.|...|.-.+.|.++...+...........
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSV 452 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEE
Confidence 99 999999999999999 333333322 257899999999 88 999999999999999999777766655443334
Q ss_pred eeEcCCCCEEEEEeCCCcEEEEECCCCcch
Q 017601 331 FSKCSNRDVLGGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 331 ~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~ 360 (369)
+..+++|.+||.||.|+.|+||.+...+..
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 455889999999999999999998776543
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.2e-14 Score=125.34 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=140.2
Q ss_pred eeEEEECCCC----ceeEEEEecccceEEEEeCCcceEE------EE---eeeCCcceeeeccCCCCCCCCcEEEEEcCC
Q 017601 151 WSGLCFSPSQ----WSMAAVARSFSKSIDVYDQDIHLRT------LR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGC 217 (369)
Q Consensus 151 ~~~l~~~p~~----~~~~a~~~s~d~~i~lwd~~~~~~~------~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~ 217 (369)
.+.+-|.|+. +.++|++ +..+|||.++..... +. ...+...++.+.|....| ..+.+.|-|-
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs---~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp--~~igtSSiDT 173 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATS---SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP--NLIGTSSIDT 173 (364)
T ss_pred ccceEecCCccccCcchhhcc---cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc--ceeEeecccC
Confidence 3468888854 2466765 357999977521111 11 111233444455543333 5777788899
Q ss_pred eEEEEeCCcccCCceeee-eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee---eeccccccCceEEEEE
Q 017601 218 QLTIWDLRMKENGGCLHR-ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL---SRWVHCSKYEITGLSF 291 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~---~~~~~h~~~~v~~l~~ 291 (369)
++.|||+.++..+..... +.|. ..|+.++|...+ .+|+.|.||+|++||+|..+-. .+-... ..+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~-~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP-STPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecC--cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC-CCcceeecc
Confidence 999999998622112222 4454 999999999977 9999999999999999985432 222232 467899999
Q ss_pred cCCCCCEEEEEECCC-eEEEEECcC-CceeEEEEcCCCe-eeeeEcC-CCCEEEEEeCCCcEEEEECCCC
Q 017601 292 SSIDSNYIYVQGVDY-EVFCGQWRE-SSKVFAFRGDSNW-LGFSKCS-NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 292 sp~d~~~l~s~s~D~-~i~vwd~~~-~~~~~~~~g~~~~-~~~~~~~-d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+++|.+++|+-.+|. .|.+.|++. ...+..+++|..- .++...| ....|+++++|..+.|||+.+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 999999999988876 799999987 4567788888721 3444455 6789999999999999999763
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=9.2e-15 Score=141.55 Aligned_cols=252 Identities=14% Similarity=0.049 Sum_probs=166.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCc-eeEEEEec
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQW-SMAAVARS 169 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~a~~~s 169 (369)
-..+|.++.|+|.. ..+++++..+|.|.+||+..+..... ..+..+...+.+. +..+.|-.... ..++++ |
T Consensus 241 ~~s~v~~~~f~p~~---p~ll~gG~y~GqV~lWD~~~~~~~~~---s~ls~~~~sh~~~-v~~vvW~~~~~~~~f~s~-s 312 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFD---PNLLAGGCYNGQVVLWDLRKGSDTPP---SGLSALEVSHSEP-VTAVVWLQNEHNTEFFSL-S 312 (555)
T ss_pred cCCceeEEEeccCC---cceEEeeccCceEEEEEccCCCCCCC---cccccccccCCcC-eEEEEEeccCCCCceEEE-e
Confidence 35889999999974 68999999999999999987643211 1111122222222 33566644221 347777 6
Q ss_pred ccceEEEEeCCcceEEEE-----ee-------eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE---EeCCcccC--Cce
Q 017601 170 FSKSIDVYDQDIHLRTLR-----TL-------WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI---WDLRMKEN--GGC 232 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~~~~-----~~-------~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i---wD~~~~~~--~~~ 232 (369)
.||.|+.|+++....... .. .....+..+.+.+..| ..|+.++++|.|.- ++.+.... -+.
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 799999998753222111 00 1112233344333333 58999999998876 33333210 011
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCC-CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPR-RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~-~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+..+..+ .++|+++.++|-+ .+.+++ |-+|+||... ...++..+.-+ ...|++++|||..+..++++..||.+.
T Consensus 391 ~~~~~~h-~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 391 HSTFITH-IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccc-CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceEEEEEcCCCcee
Confidence 2222222 4899999999999 445555 9999999988 77888888888 888999999998888999999999999
Q ss_pred EEECcCC--ceeEEEEcCCCeeeeeE-cCCCCEEEEEeCCCcEEEEECC
Q 017601 310 CGQWRES--SKVFAFRGDSNWLGFSK-CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 310 vwd~~~~--~~~~~~~g~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+||+... +.+.+..-+........ ..+|.+|+.|...|++.+|++.
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 9999763 33333322221122222 3469999999999999999985
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=2.2e-13 Score=128.32 Aligned_cols=250 Identities=20% Similarity=0.193 Sum_probs=175.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~ 166 (369)
...|...|..+.|.+.+ ..+...+.++.+.+|+....... ...+..... ..+..+.+ +++....++.
T Consensus 61 ~~~~~~~i~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 61 LRGHEDSITSIAFSPDG----ELLLSGSSDGTIKLWDLDNGEKL----IKSLEGLHD----SSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeccceEEEEEECCCC----cEEEEecCCCcEEEEEcCCCcee----EEEEeccCC----CceeeEEEECCCcceEEec
Confidence 56899999999998873 56777778899999998865200 111111000 11334555 6755545555
Q ss_pred EecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 167 ARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
....|+.+.+||... .........+...+..+.. .+++..+++++. |+.+++|++..+ ..+..+..+ ...|
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF---SPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGH-TDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE---CCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccC-CCce
Confidence 535599999999875 2222223334444443432 244556666765 999999999986 677777765 6899
Q ss_pred EEEEECCCC-cEEE-EeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce-eE
Q 017601 245 YAVCSSSTG-NIAV-AGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK-VF 320 (369)
Q Consensus 245 ~~v~~sp~g-~las-gs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~-~~ 320 (369)
.+++|+|++ .++. ++.|++|++||.+.+..+. .+.+| ...+ -..|+| ++..+++++.|+.+++||.+.... ..
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH-SDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC-Ccce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 999999999 3544 4999999999999888888 68888 6664 338999 888999999999999999987554 44
Q ss_pred EEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 321 AFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 321 ~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+.+|... ..+...+++..+++++.|+.+.+|+..+...
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 44566422 2333355778888899999999998877653
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.66 E-value=4e-15 Score=136.40 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=159.9
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcc---eEE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIH---LRT 185 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~---~~~ 185 (369)
...|+.++ ++.+||...... .-.+.++.. +.|+..++|+..+.-.+|.. +.|+.|++|.-... +..
T Consensus 5 l~~aS~gd--~~kl~D~s~~~~-----~~~~~~~t~---~pg~~s~~w~~~n~lvvas~-~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGD--KTKLSDFSDLET-----KSEYVHQTA---EPGDFSFNWQRRNFLVVASM-AGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred eeeeccCC--ceEEeecccccC-----ccccccCCC---CCcceeeeccccceEEEeec-CCceeEEEecccCCCCccce
Confidence 34455444 577888764311 112222322 23466788888544334444 78999999975433 322
Q ss_pred EEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC
Q 017601 186 LRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR 262 (369)
Q Consensus 186 ~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~ 262 (369)
+.... ...+++... + .-++++++..+.|+|||++.. -+.+.++.| ...|+++.++-.. +||+++..|
T Consensus 74 ~~k~~gd~~~Cv~~~s---~---S~y~~sgG~~~~Vkiwdl~~k---l~hr~lkdh-~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACAS---Q---SLYEISGGQSGCVKIWDLRAK---LIHRFLKDH-QSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred eeccccchHHHHhhhh---c---ceeeeccCcCceeeehhhHHH---HHhhhccCC-cceeEEEEecCCcceeEEeccCC
Confidence 32222 222333332 2 347888999999999999965 555667777 7999999999888 999999999
Q ss_pred cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCC-CeeeeeEcC-CCCE
Q 017601 263 TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDS-NWLGFSKCS-NRDV 339 (369)
Q Consensus 263 ~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~-~~~~~~~~~-d~~~ 339 (369)
-|.|..+.++....+|.......|.-+.|||....+|.++|.+|.|.+||+.....++.+ ..|+ ...++..+| +..+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 999999999888888875524557799999944445677899999999999987776666 3455 113556666 7788
Q ss_pred EEEEeCCCcEEEEECCCCc
Q 017601 340 LGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 340 l~sgs~dg~I~iWd~~~~~ 358 (369)
|++.+.|..|++||....+
T Consensus 224 ~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred EEEecccceEEEeeccccc
Confidence 9999999999999998654
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=1.1e-14 Score=138.33 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=181.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|+++.|+|+. ..|.|.+.|..+.+|.-++.. .+-.....+. ..+...+|+.+.-|+|+. ..+++-
T Consensus 263 l~GHeDWV~sv~W~p~~----~~LLSASaDksmiiW~pd~~t-GiWv~~vRlG--e~gg~a~GF~g~lw~~n~-~~ii~~ 334 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG----LDLLSASADKSMIIWKPDENT-GIWVDVVRLG--EVGGSAGGFWGGLWSPNS-NVIIAH 334 (764)
T ss_pred hcCcccceEEEEEccch----hhheecccCcceEEEecCCcc-ceEEEEEEee--cccccccceeeEEEcCCC-CEEEEe
Confidence 45999999999999973 577777788899999876441 1110011111 011123567789999954 455555
Q ss_pred ecccceEEEEeC-CcceEEEE--eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc-CCceeeeeeccCCCc
Q 017601 168 RSFSKSIDVYDQ-DIHLRTLR--TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE-NGGCLHRICGSVGDI 243 (369)
Q Consensus 168 ~s~d~~i~lwd~-~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~-~~~~~~~~~~~~~~~ 243 (369)
++-|..++|.. ++...... ...|...+..+.+. |.|..|+++|.|.|-|||---..+ .-..+.+-+-| +..
T Consensus 335 -g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH-GyD 409 (764)
T KOG1063|consen 335 -GRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH-GYD 409 (764)
T ss_pred -cccCcEEEEeccCccceeeccccccccccceeeeec---CCCCEEEEeccccceeeecccccccceeeecccccc-ccc
Confidence 78999999973 22222221 22355666666654 357799999999999998644111 11233344444 688
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCC----------------------------------------------------
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPR---------------------------------------------------- 270 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~---------------------------------------------------- 270 (369)
++|++|-+.. .+++|.+.+.+|+|+..
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 9999998856 99999999999999865
Q ss_pred ------------------------CceeeeeccccccCceEEEEEcCCCCCEEEEEECCC-----eEEEEECcCCceeEE
Q 017601 271 ------------------------RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY-----EVFCGQWRESSKVFA 321 (369)
Q Consensus 271 ------------------------~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~~~~~~ 321 (369)
.+..++++.|| ..+|++++.+| +++++||++... .|++|+..+-.....
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 01123445688 99999999999 999999987543 689999988777778
Q ss_pred EEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 322 FRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 322 ~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+.+|+ ..++. ++|+++|++.|.|+++.+|......
T Consensus 568 L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 568 LEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred ecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeeccc
Confidence 89999 77766 6799999999999999999885543
No 164
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.6e-15 Score=131.03 Aligned_cols=188 Identities=13% Similarity=0.124 Sum_probs=124.6
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEEEecccceEEEEeCCcce--EE
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAVARSFSKSIDVYDQDIHL--RT 185 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~~~--~~ 185 (369)
.++|..=++|.|+++|..++. .+. .+...+. . ..++.|... .+..+.+| +.||+|++||+.... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~--~fk~~~~--~-----~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLE--EFKGPPA--T-----TNGVRFISCDSPHGVISC-SSDGTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhh--eecCCCC--c-----ccceEEecCCCCCeeEEe-ccCCeEEEEEeecchhhhh
Confidence 467777788999999988742 111 1111111 1 225666553 44556777 899999999985322 22
Q ss_pred EEeeeCC-cceeeeccCCCCCCCCcEEEEE-----cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEE
Q 017601 186 LRTLWYP-SSLNFVQNLSPVNGGPNMLAVT-----EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAV 257 (369)
Q Consensus 186 ~~~~~~~-~~v~~~~~~~~~~~~~~lla~s-----~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~las 257 (369)
+...+++ .....+.. +- ...+++++ .+-.|.+||+|..+ +.+..+...+.+.|++++|+|.. +|++
T Consensus 110 ~~~~~~~~~~f~~ld~---nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 110 ISWTQQSGTPFICLDL---NC-KKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred eeccCCCCCcceEeec---cC-cCCeEEeccccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 2222333 33333331 11 23455543 36789999999873 33555442225999999999998 9999
Q ss_pred EeCCCcEEEEeCCCc---eeeeeccccccCceEEEEEcCCCC-CEEEEEECCCeEEEEECcC
Q 017601 258 AGADRTVTIYDPRRW---SALSRWVHCSKYEITGLSFSSIDS-NYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 258 gs~D~~v~vwD~~~~---~~~~~~~~h~~~~v~~l~~sp~d~-~~l~s~s~D~~i~vwd~~~ 315 (369)
||.||-|.|||+... ..+.....| ...|..+.|.. ++ +.+.+-+.+.+..+|+++.
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~-~sSI~~igw~~-~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINH-GSSIHLIGWLS-KKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcc-cceeeeeeeec-CCcceEEEEEccCceeEEEccC
Confidence 999999999998763 234455567 78899999987 55 3577888999999999876
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.66 E-value=7.3e-14 Score=122.36 Aligned_cols=252 Identities=13% Similarity=0.119 Sum_probs=157.5
Q ss_pred CCccceeeEEEEeecC-CCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC---CceeE
Q 017601 89 CPHRSEVQSIALAETD-SSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS---QWSMA 164 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~-~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~---~~~~~ 164 (369)
-.|...|..++|.+=. .+...+.|++..+ ++.++....... ...++.-.....++...-++|+-+ ++-++
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~-----ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l 108 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG-----IRLLQSYADEDHDESFYTCSWSYDSNTGNPFL 108 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc-----eeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence 4677888888887411 1124555655443 555665543210 111111111112222334666432 23466
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee---ccCC
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC---GSVG 241 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~---~~~~ 241 (369)
|++ +.-|.|+|.|..+....-....|...++-+...|..| +.++++|.|..|+||++++. .|+..+- +| .
T Consensus 109 a~~-G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~---~Cv~VfGG~egH-r 181 (385)
T KOG1034|consen 109 AAG-GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTD---VCVAVFGGVEGH-R 181 (385)
T ss_pred Eee-cceeEEEEEecchhhhccceeccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCC---eEEEEecccccc-c
Confidence 776 7999999999864433333334556666666655444 68999999999999999998 8887765 34 6
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce------ee-------------------eec---ccccc---------
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS------AL-------------------SRW---VHCSK--------- 283 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~------~~-------------------~~~---~~h~~--------- 283 (369)
+.|.++.|+++| +|++++.|.++++|++...+ .. ..+ ..| .
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH-rnyVDCvrw~ 260 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH-RNYVDCVRWF 260 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc-cchHHHHHHH
Confidence 899999999999 99999999999999987210 00 000 011 1
Q ss_pred ---------------------------------------------CceEEE--EEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 284 ---------------------------------------------YEITGL--SFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 284 ---------------------------------------------~~v~~l--~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
..|.-+ +|.| -++.||.|...|.|.+||++..
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCC
Confidence 112223 3445 5678999999999999999885
Q ss_pred ce--eEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECC
Q 017601 317 SK--VFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 317 ~~--~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+. ..++..+..-..+.. +.|+.+|+...+|++|.-||..
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 44 222221111011222 3499999999999999999864
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.1e-15 Score=143.63 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=143.7
Q ss_pred eeEEEE-ecccceEEEEeCCcce----EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC----Cce
Q 017601 162 SMAAVA-RSFSKSIDVYDQDIHL----RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN----GGC 232 (369)
Q Consensus 162 ~~~a~~-~s~d~~i~lwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~----~~~ 232 (369)
..+|+- .+.-|.|.||++.+.- ..+..+.+...+..++|-||++ .+|+.+++||.|+||-+..+.. ..+
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~--~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDD--ERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCCh--HHeeecccCceEEEEEeccCCCCcccCCc
Confidence 344441 1557899999986432 2234445667778888888855 6899999999999999875421 123
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
...+..| +..|+++.|+|-. .|++++.|-+|++||+++++....+.+| ++.|.+++||| ||+.+++.+.|++|++
T Consensus 670 e~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-tdqIf~~AWSp-dGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 670 EKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH-TDQIFGIAWSP-DGRRIATVCKDGTLRV 746 (1012)
T ss_pred ceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC-cCceeEEEECC-CCcceeeeecCceEEE
Confidence 3445656 7899999999987 9999999999999999999999999999 99999999999 9999999999999999
Q ss_pred EECcCCc-eeEEEEcC--CCeeeeeEcCCCCEEEEEeCC----CcEEEEECCCC
Q 017601 311 GQWRESS-KVFAFRGD--SNWLGFSKCSNRDVLGGWSDS----GSIFVADVVAK 357 (369)
Q Consensus 311 wd~~~~~-~~~~~~g~--~~~~~~~~~~d~~~l~sgs~d----g~I~iWd~~~~ 357 (369)
++.+.++ .++.-.|. .+-..+....||++++..+.| +.|.+||..+-
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 9988743 22222221 121334445588888777766 57788887653
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.65 E-value=8.4e-15 Score=130.92 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=149.4
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc--cccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL--TYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
.++|++.|-.++|+|-+ ..+|||++.|.+|.+|++-......+.. ...+.+|...+ --++|+|...+.++
T Consensus 77 v~GHt~~vLDi~w~Pfn---D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV-----g~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFN---DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV-----GLVQWHPTAPNVLL 148 (472)
T ss_pred ccCccccccccccCccC---CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE-----EEEeecccchhhHh
Confidence 58999999999999964 4799999999999999997653322211 11223332222 24899999999999
Q ss_pred EEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 166 VARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
++ +.|.+|.||+.+.....+. +.|+..+..+. |+-||+.|++++.|..|+|||.|++ ..+..-..|.+..-.
T Consensus 149 sa-g~Dn~v~iWnv~tgeali~-l~hpd~i~S~s---fn~dGs~l~TtckDKkvRv~dpr~~---~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 149 SA-GSDNTVSIWNVGTGEALIT-LDHPDMVYSMS---FNRDGSLLCTTCKDKKVRVIDPRRG---TVVSEGVAHEGAKPA 220 (472)
T ss_pred hc-cCCceEEEEeccCCceeee-cCCCCeEEEEE---eccCCceeeeecccceeEEEcCCCC---cEeeecccccCCCcc
Confidence 98 8999999999986555444 33776655554 3346889999999999999999998 677665433244444
Q ss_pred EEEECCCC-cEEEE---eCCCcEEEEeCCCc-ee--eeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCc
Q 017601 246 AVCSSSTG-NIAVA---GADRTVTIYDPRRW-SA--LSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESS 317 (369)
Q Consensus 246 ~v~~sp~g-~lasg---s~D~~v~vwD~~~~-~~--~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~ 317 (369)
-+-|-.+| .+-+| ..++.+.|||..+. ++ +.++... ..|.-==|.| |.++++.+| .|+.||.|.+....
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~-dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDP-DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecC-CCCEEEEEecCCcceEEEEecCCC
Confidence 45577778 44444 35889999998773 23 3344433 4555556678 878877666 59999999998754
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=6.6e-15 Score=138.51 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=157.7
Q ss_pred EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc---------ceE
Q 017601 114 VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI---------HLR 184 (369)
Q Consensus 114 ~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~---------~~~ 184 (369)
.+..|.|-|+++...+.-.++..-. -.....+..+.|.|-++..+|++ ..|+.|+||.+.. ...
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~------l~Ngt~vtDl~WdPFD~~rLAVa-~ddg~i~lWr~~a~gl~e~~~tPe~ 671 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPG------LFNGTLVTDLHWDPFDDERLAVA-TDDGQINLWRLTANGLPENEMTPEK 671 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccc------cccCceeeecccCCCChHHeeec-ccCceEEEEEeccCCCCcccCCcce
Confidence 3567899999998653322211001 11122367899999999999999 8999999997531 111
Q ss_pred EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCc
Q 017601 185 TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRT 263 (369)
Q Consensus 185 ~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~ 263 (369)
.+ ..|...+.++.++|... ..|++++.|.+|+|||+++. +...++.+| ++.|..++|||+| ++|+-+.||+
T Consensus 672 ~l--t~h~eKI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~---~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 672 IL--TIHGEKITSLRFHPLAA--DVLAVASYDSTIELWDLANA---KLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred ee--ecccceEEEEEecchhh--hHhhhhhccceeeeeehhhh---hhhheeccC-cCceeEEEECCCCcceeeeecCce
Confidence 11 22556788888877654 47888899999999999988 666678877 8999999999999 9999999999
Q ss_pred EEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCC----eEEEEECcC--CceeEEEEcCCCeeeeeEcC-
Q 017601 264 VTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----EVFCGQWRE--SSKVFAFRGDSNWLGFSKCS- 335 (369)
Q Consensus 264 v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----~i~vwd~~~--~~~~~~~~g~~~~~~~~~~~- 335 (369)
|+||..|++ +++.+-.+.....--.+.|-- ||++++..+.|. .|.+||.++ ...+.+..-+. ....-.+
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~LvP~ 820 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLVPH 820 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccccc
Confidence 999999984 455554444223344566776 999999988875 578888776 23333332121 0000111
Q ss_pred ----CCCEEEEEeCCCcEEEEECCCC
Q 017601 336 ----NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 336 ----d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+-++++|-.|..|++|.+--.
T Consensus 821 YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 821 YDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ccCCCceEEEecCCCceEEEEEecCC
Confidence 3557889999999999987543
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=3.9e-13 Score=125.36 Aligned_cols=246 Identities=10% Similarity=0.035 Sum_probs=145.1
Q ss_pred CccceeeEEEEeecCCCCceEE-EEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVL-GSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~l-as~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+.+....++++|++ ..| ++....+.|.+|+++.. ..+.. ..... . .+....++|+|++..++++.
T Consensus 32 ~~~~~~~~l~~spd~----~~lyv~~~~~~~i~~~~~~~~-g~l~~-~~~~~-~-----~~~p~~i~~~~~g~~l~v~~- 98 (330)
T PRK11028 32 DVPGQVQPMVISPDK----RHLYVGVRPEFRVLSYRIADD-GALTF-AAESP-L-----PGSPTHISTDHQGRFLFSAS- 98 (330)
T ss_pred ecCCCCccEEECCCC----CEEEEEECCCCcEEEEEECCC-CceEE-eeeec-C-----CCCceEEEECCCCCEEEEEE-
Confidence 344567789999984 344 34445788999998732 11110 00000 0 01234799999665544444
Q ss_pred cccceEEEEeCCcc---eEEEEee---eCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCce--eeeeecc
Q 017601 169 SFSKSIDVYDQDIH---LRTLRTL---WYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGC--LHRICGS 239 (369)
Q Consensus 169 s~d~~i~lwd~~~~---~~~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~--~~~~~~~ 239 (369)
..++.|.+||.+.. ....... .++..+. ++|++..++++. .++.|.+||+.+...... .......
T Consensus 99 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~------~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~ 172 (330)
T PRK11028 99 YNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSAN------IDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV 172 (330)
T ss_pred cCCCeEEEEEECCCCCCCCceeeccCCCcccEeE------eCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence 56899999987521 1111111 1222222 335666765554 579999999976311110 0111111
Q ss_pred CCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCC--c--eeeeecccc---c--cCceEEEEEcCCCCCEEEEEEC-CCe
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRR--W--SALSRWVHC---S--KYEITGLSFSSIDSNYIYVQGV-DYE 307 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~--~--~~~~~~~~h---~--~~~v~~l~~sp~d~~~l~s~s~-D~~ 307 (369)
.+.....++|+|+| +++++.. +++|.+||+.. + +.+.++..+ . ......+.|+| ++++++++.. ++.
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~ 251 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASL 251 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCe
Confidence 13456789999999 7767665 99999999973 2 333333221 0 11234689999 9999888754 789
Q ss_pred EEEEECcCCceeEEEEcCC----CeeeeeEcCCCCEEEEEeC-CCcEEEEECC
Q 017601 308 VFCGQWRESSKVFAFRGDS----NWLGFSKCSNRDVLGGWSD-SGSIFVADVV 355 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~----~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~ 355 (369)
|.+|++........+.++. .-..+...+||++|+++.. +++|.+|++.
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999996543222222221 0124455679999887776 8999999874
No 170
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.64 E-value=1.1e-13 Score=131.71 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=185.8
Q ss_pred EEEEeCCeEEEEEEeCCc-hhhhcCCCcc-ccccCccc---c-cccccc-cCCccceeeEEEEeecCCCCceEEEEEecC
Q 017601 45 VYIASGCHLYKLQVMMDD-WFVSEGKDSL-LIPEQTPV---M-DSSMLN-RCPHRSEVQSIALAETDSSGYMVLGSVDSY 117 (369)
Q Consensus 45 ~~~as~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~---~-~~~~~~-~~~H~~~V~~l~~s~~~~~~~~~las~d~~ 117 (369)
+++.-.+=||.+.-.++. .+++..-+.. .+|.+.+. . ..-++. .-+..+.-+..-|+|++ ..+.+-+..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~ 337 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRT 337 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEeccc
Confidence 344555556666766665 3333333322 22222111 1 111221 12445678889999974 677778889
Q ss_pred CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee----CCc
Q 017601 118 GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW----YPS 193 (369)
Q Consensus 118 g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----~~~ 193 (369)
|-.++|..... ..-.....+.+|. .++.+++|+|.++ ++.+. |-|.+-|||-.....+..+... |..
T Consensus 338 Gg~hlWkt~d~--~~w~~~~~iSGH~-----~~V~dv~W~psGe-flLsv-s~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 338 GGFHLWKTKDK--TFWTQEPVISGHV-----DGVKDVDWDPSGE-FLLSV-SLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CcEEEEeccCc--cceeecccccccc-----ccceeeeecCCCC-EEEEe-ccccceeeecccccccceeeecccccccc
Confidence 99999982211 1001111122222 2466899999766 55555 7999999996542222233322 223
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc----------c----------------------------c--CC---
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM----------K----------------------------E--NG--- 230 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~----------~----------------------------~--~~--- 230 (369)
.+..+...+ .+..|+++++...+|+|+... + + .+
T Consensus 409 Dl~c~~~vn---~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 409 DLTCLSFVN---EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred cceeeehcc---CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 333333221 245788888888888887521 0 0 00
Q ss_pred ------------------------------ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCCcee
Q 017601 231 ------------------------------GCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRRWSA 274 (369)
Q Consensus 231 ------------------------------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~~~~ 274 (369)
..++.+-+| +..|++++.+|+| ++|++.... .|++|+..++..
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 001112223 5679999999999 899886543 589999999999
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc----eeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcE
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS----KVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSI 349 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~----~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I 349 (369)
.+.+.+| .-.|+.++||| |+++|++.|.|+++.+|...... .....+.|++.. .....|++.+++++|.|.+|
T Consensus 565 ~~~L~~H-sLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V 642 (764)
T KOG1063|consen 565 VQELEGH-SLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKV 642 (764)
T ss_pred hheeccc-ceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceE
Confidence 9999999 99999999999 99999999999999999986521 122246787432 11225588899999999999
Q ss_pred EEEECCCC
Q 017601 350 FVADVVAK 357 (369)
Q Consensus 350 ~iWd~~~~ 357 (369)
++|.....
T Consensus 643 kVW~~~~~ 650 (764)
T KOG1063|consen 643 KVWEEPDL 650 (764)
T ss_pred EEEeccCc
Confidence 99988766
No 171
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=6.1e-14 Score=131.36 Aligned_cols=237 Identities=16% Similarity=0.139 Sum_probs=165.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCce-eEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS-MAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~a~ 166 (369)
+.+|++.|.+|...|. +..||+++.+|+|++|.+.++. +.+.++- .+-+.+|+|+|.... ++|+
T Consensus 396 yrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgR-----cvr~~~~------d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGR-----CVRTVQF------DSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred EeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecce-----EEEEEee------cceeEEEEecCCCCceeEEE
Confidence 6799999999999986 4899999999999999998772 2222221 113568999996553 3444
Q ss_pred EecccceEEEEeC--Cc----------------------------------ceEEE-EeeeCCcceeeeccCCCCCCCCc
Q 017601 167 ARSFSKSIDVYDQ--DI----------------------------------HLRTL-RTLWYPSSLNFVQNLSPVNGGPN 209 (369)
Q Consensus 167 ~~s~d~~i~lwd~--~~----------------------------------~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 209 (369)
+ ....+-|-+. +. ....+ ....++..+..+.|+. .|.+
T Consensus 461 A--~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDY 535 (733)
T KOG0650|consen 461 A--VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDY 535 (733)
T ss_pred E--ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCce
Confidence 4 3333444332 00 00000 1122444455555543 4667
Q ss_pred EEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc
Q 017601 210 MLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE 285 (369)
Q Consensus 210 lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~ 285 (369)
|+++.. ...|.|+++... .....|.-. .+.|.++.|+|.. +|++++ -+.|+|||+.+.+.+.++..- ...
T Consensus 536 latV~~~~~~~~VliHQLSK~---~sQ~PF~ks-kG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg-~kw 609 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKR---KSQSPFRKS-KGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG-SKW 609 (733)
T ss_pred EEEeccCCCcceEEEEecccc---cccCchhhc-CCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC-Cee
Confidence 777653 357999999866 333334332 4789999999999 777766 468999999998888887766 678
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd 353 (369)
|.+++.+| .|..|+.++.|+.+..+|+.- .+..++++-|. ..+.. -..-.++++|+.||++.|+.
T Consensus 610 iS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 610 ISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--hhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999 999999999999999999976 45666677676 33333 22456899999999999985
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=7.7e-14 Score=121.57 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=164.6
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
-.++.|++-+ ..||.+-.+|+|.+||+.+..- ...+.+|-.+ +++++||++ +..++++ |.|..|
T Consensus 26 a~~~~Fs~~G----~~lAvGc~nG~vvI~D~~T~~i-----ar~lsaH~~p-----i~sl~WS~d-gr~Llts-S~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWG----DYLAVGCANGRVVIYDFDTFRI-----ARMLSAHVRP-----ITSLCWSRD-GRKLLTS-SRDWSI 89 (405)
T ss_pred cceEEeccCc----ceeeeeccCCcEEEEEccccch-----hhhhhccccc-----eeEEEecCC-CCEeeee-cCCcee
Confidence 6799999974 7999999999999999987631 1222333332 568999995 4566777 899999
Q ss_pred EEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEEC
Q 017601 175 DVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSS 250 (369)
Q Consensus 175 ~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~s 250 (369)
.+||+- ...+.++ .+..+.+.+++|. +.+..+++--+..-.+-++..+. ..++. ..... .....+..|.
T Consensus 90 ~lwDl~~gs~l~rir---f~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~-h~~Lp-~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR---FDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPK-HSVLP-KDDDGDLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEEE---ccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCc-eeecc-CCCcccccccccccccc
Confidence 999974 3444443 3344555665553 23455554444434444444321 01111 11110 1122233588
Q ss_pred CCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-------Cc--eeE
Q 017601 251 STG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-------SS--KVF 320 (369)
Q Consensus 251 p~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-------~~--~~~ 320 (369)
+.| ++++|...|.+.++|..+.+++..++-.....|.++.|+- .|+.|+..+.|+.||.++++. ++ +.+
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 999 9999999999999999999999988866237899999998 999999999999999999873 11 112
Q ss_pred EEE---cCCCeeeeeEcCCCCEEEEEeC-CCcEEEEECCCCcchhhhccc
Q 017601 321 AFR---GDSNWLGFSKCSNRDVLGGWSD-SGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 321 ~~~---g~~~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~~~~~~~~~l~g 366 (369)
.+. ....|..+..+.||.+++.|+. -..++||.-..|. .+..|.|
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs-LVKILhG 290 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS-LVKILHG 290 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc-eeeeecC
Confidence 221 1224555555559999887775 4789999987774 3444443
No 173
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1.4e-13 Score=123.20 Aligned_cols=206 Identities=11% Similarity=0.102 Sum_probs=152.8
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
-++.|..++.... .|.++..+|++.+|....+...... ...+.. ..+...+.-++..+.++|+| +.
T Consensus 104 ~~~~I~gl~~~dg------~Litc~~sG~l~~~~~k~~d~hss~-l~~la~------g~g~~~~r~~~~~p~Iva~G-Gk 169 (412)
T KOG3881|consen 104 GTKSIKGLKLADG------TLITCVSSGNLQVRHDKSGDLHSSK-LIKLAT------GPGLYDVRQTDTDPYIVATG-GK 169 (412)
T ss_pred ccccccchhhcCC------EEEEEecCCcEEEEeccCCcccccc-ceeeec------CCceeeeccCCCCCceEecC-ch
Confidence 4566777776542 5566688899999988744210000 000100 12344566778788888887 77
Q ss_pred c--ceEEEEeCCcceEEEEeee------------CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee
Q 017601 171 S--KSIDVYDQDIHLRTLRTLW------------YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 171 d--~~i~lwd~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
. ..++|||.....+.+.... -.+.+.|+... + ...|++++.-++|++||.+.+. .++..+
T Consensus 170 e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~---~-~~~fat~T~~hqvR~YDt~~qR--RPV~~f 243 (412)
T KOG3881|consen 170 ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGS---P-NYKFATITRYHQVRLYDTRHQR--RPVAQF 243 (412)
T ss_pred hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCC---C-CceEEEEecceeEEEecCcccC--cceeEe
Confidence 7 8899999876654443221 12344455421 1 5689999999999999999764 678777
Q ss_pred eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeee-ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 237 CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
... ..+++++...|.| .+++|..-+.+..||+|+++.+.. +.+. .+.|+++..+| ...+++++|.|+.+||+|++
T Consensus 244 d~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp-~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 244 DFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHP-THPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred ccc-cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcC-CCceEEeeccceeEEEeecc
Confidence 755 6899999999999 999999999999999999998876 8888 99999999999 88999999999999999999
Q ss_pred CCcee
Q 017601 315 ESSKV 319 (369)
Q Consensus 315 ~~~~~ 319 (369)
+.+++
T Consensus 321 trkll 325 (412)
T KOG3881|consen 321 TRKLL 325 (412)
T ss_pred cchhh
Confidence 85443
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.5e-13 Score=134.49 Aligned_cols=240 Identities=15% Similarity=0.127 Sum_probs=152.7
Q ss_pred EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEE-CCCCceeEEEEecccceEE
Q 017601 97 SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCF-SPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~~~~a~~~s~d~~i~ 175 (369)
.+.|+|=+ ..+++.|..-.+.+||...+.. +. .|.- .......++.+.+ +.++..++.++ +.||.|+
T Consensus 1069 ~~~~hpf~----p~i~~ad~r~~i~vwd~e~~~~-l~--~F~n----~~~~~t~Vs~l~liNe~D~aLlLta-s~dGvIR 1136 (1387)
T KOG1517|consen 1069 TLKFHPFE----PQIAAADDRERIRVWDWEKGRL-LN--GFDN----GAFPDTRVSDLELINEQDDALLLTA-SSDGVIR 1136 (1387)
T ss_pred eeeecCCC----ceeEEcCCcceEEEEecccCce-ec--cccC----CCCCCCccceeeeecccchhheeee-ccCceEE
Confidence 45555532 4677778777899999986521 11 1111 1111223555665 55566778887 9999999
Q ss_pred EEeCC-------cceEEEEeeeC----Ccce-eeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 176 VYDQD-------IHLRTLRTLWY----PSSL-NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 176 lwd~~-------~~~~~~~~~~~----~~~v-~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
||+-- +.+.....+.. .... ..+.|- ...+.|+++|+-..|+|||.... ..++.+.......
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq---Q~~G~Ll~tGd~r~IRIWDa~~E---~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ---QQSGHLLVTGDVRSIRIWDAHKE---QVVADIPYGSSTL 1210 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehh---hhCCeEEecCCeeEEEEEecccc---eeEeecccCCCcc
Confidence 99642 12222222211 0000 111221 13568888888889999999876 5666554332466
Q ss_pred EEEEEEC-CCC-cEEEEeCCCcEEEEeCCCc---eeeeeccccccCc--eEEEEEcCCCCCE-EEEEECCCeEEEEECcC
Q 017601 244 LYAVCSS-STG-NIAVAGADRTVTIYDPRRW---SALSRWVHCSKYE--ITGLSFSSIDSNY-IYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 244 v~~v~~s-p~g-~lasgs~D~~v~vwD~~~~---~~~~~~~~h~~~~--v~~l~~sp~d~~~-l~s~s~D~~i~vwd~~~ 315 (369)
|+++.-+ +.| .+++|-.||+|++||.|.. ..+..++.| .+. |..+.+.+ .|-. |+|||.||.|++||++.
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h-~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH-NDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeeccc-CCcccceeEEeec-CCCcceeeeccCCeEEEEeccc
Confidence 7777443 335 9999999999999999873 346778888 777 99999998 5544 99999999999999998
Q ss_pred CceeEEE--EcCCCe----eeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 316 SSKVFAF--RGDSNW----LGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 316 ~~~~~~~--~g~~~~----~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
......+ ..|..+ ..+..-.....||+|+. +.|+||++...
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 4222111 111100 12222337789999999 99999998644
No 175
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=3.7e-13 Score=135.14 Aligned_cols=261 Identities=15% Similarity=0.123 Sum_probs=174.6
Q ss_pred ccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc----ccccccCCCCCCCCCCeeEEEECCCC
Q 017601 85 MLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR----LTYSVLPQDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 85 ~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~p~~ 160 (369)
..++..|...|..++.++++ ..+.++++.+|+|++|+..+-..+... ..|.. .+.-+..+.+.+ .
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-------~~sr~~~vt~~~-~ 1109 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEH---TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-------EGSRVEKVTMCG-N 1109 (1431)
T ss_pred eehhhhccccccceeecCCC---CceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-------cCCceEEEEecc-C
Confidence 33466899999999998874 479999999999999999754322111 11211 011244677777 4
Q ss_pred ceeEEEEecccceEEEEeCCcc-eEEE-----Ee--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 161 WSMAAVARSFSKSIDVYDQDIH-LRTL-----RT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~-~~~~-----~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
...+|++ +.||.|++.+++.. ...+ +. ......+.......+......++.+..-+.+..||+++..+...
T Consensus 1110 ~~~~Av~-t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1110 GDQFAVS-TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCeEEEE-cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 4578888 89999999988641 1111 11 11122222222111111112566778889999999998743222
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC--CEEEEEEC--CCe
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS--NYIYVQGV--DYE 307 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~--~~l~s~s~--D~~ 307 (369)
++.-..| +.|++++.+|.+ ++++|...|.+-+||+|=+.++..|......+|+.+..+|.-+ ...++++. -+.
T Consensus 1189 lk~~~~h--G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1189 LKNQLRH--GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhcCccc--cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 3222234 889999999999 9999999999999999999999888743268899998888544 56666554 679
Q ss_pred EEEEECcCCceeEEEEcC-C----------C-------eeeeeEc-C-CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 308 VFCGQWRESSKVFAFRGD-S----------N-------WLGFSKC-S-NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~-~----------~-------~~~~~~~-~-d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|-+|++.++.+.+.+..- . + ..++..+ + -+.++.+|+.|..|+.||....+.
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 999999998777777432 1 0 0011111 1 456889999999999999887653
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2e-13 Score=122.07 Aligned_cols=254 Identities=12% Similarity=0.026 Sum_probs=167.2
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+-|+.|.|+.+ ...|+++..+.++.+|+++...-.-......+..+ +....+.+++|.. +...+.++
T Consensus 52 ~~~H~GCiNAlqFS~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~---~H~SNIF~L~F~~-~N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH---PHRSNIFSLEFDL-ENRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccC---ccccceEEEEEcc-CCeeEecC
Confidence 4689999999999987 48999999999999999874310000000111111 1123466899988 55566666
Q ss_pred ecccceEEEEeCCcceEEEEeeeCC---cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 168 RSFSKSIDVYDQDIHLRTLRTLWYP---SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 168 ~s~d~~i~lwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
..+++|.+-|+..... +....+. ..+--+..+ |-++.|++++.++.|.+||.|...+.....-... ++...
T Consensus 124 -~~~~~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~---P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~~~~F 197 (609)
T KOG4227|consen 124 -ERWGTVIKHDIETKQS-IYVANENNNRGDVYHMDQH---PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-SGKNF 197 (609)
T ss_pred -CCcceeEeeeccccee-eeeecccCcccceeecccC---CCCceEEEEecCceEEEEeccCCCCCCceeeecC-CCccc
Confidence 8999999999864322 2222222 233333333 4467899999999999999997642222222222 25789
Q ss_pred EEEEECCCC--cEEEEeCCCcEEEEeCCCce-eeeecccc--c---cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 245 YAVCSSSTG--NIAVAGADRTVTIYDPRRWS-ALSRWVHC--S---KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 245 ~~v~~sp~g--~lasgs~D~~v~vwD~~~~~-~~~~~~~h--~---~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
+++.|+|.. +|++++..+-+.|||.|... ++....+. + ..+-.++.|+| +|+.|++--.-..-.+||+-..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecc
Confidence 999999998 89999999999999998732 23222211 0 22347899999 9999988776667778898775
Q ss_pred ce-eEEEEcCC----CeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 317 SK-VFAFRGDS----NWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 317 ~~-~~~~~g~~----~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
+| ++.+.... +...+..|. +...+++||.+-.|++|.+..
T Consensus 277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 44 23332111 112222232 556699999999999999764
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=2.2e-13 Score=119.22 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=145.0
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc--------------eEEEEeeeCCc---ceeeeccCCCCCCCCcEEEEEc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH--------------LRTLRTLWYPS---SLNFVQNLSPVNGGPNMLAVTE 215 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--------------~~~~~~~~~~~---~v~~~~~~~~~~~~~~lla~s~ 215 (369)
++.|+|++. .|++- +.|..+++|++... ...++.....+ .+.+.......|+...+++.+.
T Consensus 54 gckWSPDGS-ciL~~-sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGS-CILSL-SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred cceeCCCCc-eEEee-cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 689999655 55555 79999999986311 11111111111 1112111222355556666778
Q ss_pred CCeEEEEeCCcccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEeCCCcEEEEeC-CCceee--e-ecc----ccccCc
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAGADRTVTIYDP-RRWSAL--S-RWV----HCSKYE 285 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs~D~~v~vwD~-~~~~~~--~-~~~----~h~~~~ 285 (369)
+.-|+|||.-+++.....+.+.+.. -....+++|+||| +|.+ +..+.|++||+ |.|.-. . ++. +. .+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq-~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ-KGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccc-cce
Confidence 9999999999984322222233220 1245689999999 6655 56789999999 554322 1 221 33 567
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeC-CCcEEEEECCCCcchh
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSD-SGSIFVADVVAKENEI 361 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~-dg~I~iWd~~~~~~~~ 361 (369)
|.+++|||.+...++.++.-.++-|+.....++++.+.||. .+++. +.+|+.|++|+. |-.|-.||++.-+..+
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 89999999888899999999999999998999999999998 66766 669999999997 7799999999887777
Q ss_pred hhcccC
Q 017601 362 SALKGL 367 (369)
Q Consensus 362 ~~l~g~ 367 (369)
-+|.+|
T Consensus 288 ~~L~rh 293 (406)
T KOG2919|consen 288 YALERH 293 (406)
T ss_pred hhhhhh
Confidence 777665
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=6.8e-14 Score=119.20 Aligned_cols=243 Identities=17% Similarity=0.137 Sum_probs=155.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|.+.|+++.|..++ +|.+++..|-|++|.+++..... .+. .++..-++++.--|+ + .+.+-
T Consensus 10 LRp~~~~v~s~~fqa~~-----rL~sg~~~G~V~~w~lqt~r~~~---~~r------~~g~~~it~lq~~p~-d-~l~tq 73 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANE-----RLMSGLSVGIVKMWVLQTERDLP---LIR------LFGRLFITNLQSIPN-D-SLDTQ 73 (323)
T ss_pred eccccchheehhhccch-----hhhcccccceEEEEEeecCccch---hhh------hhccceeeceeecCC-c-chhhc
Confidence 45999999999998763 69999999999999999763211 111 011111334444452 2 22332
Q ss_pred ecccceEEEEeCCc----ceEE------------EE--------eee---------------CC--------------cc
Q 017601 168 RSFSKSIDVYDQDI----HLRT------------LR--------TLW---------------YP--------------SS 194 (369)
Q Consensus 168 ~s~d~~i~lwd~~~----~~~~------------~~--------~~~---------------~~--------------~~ 194 (369)
+.|..+.+|+++. .++. +. ... .+ ..
T Consensus 74 -gRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 74 -GRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred -CCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence 5566666666531 0000 00 000 00 00
Q ss_pred eeeeccCCCCCCCC-c-EEEEEcCCeEEEEeCCcccCC-------ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcE
Q 017601 195 LNFVQNLSPVNGGP-N-MLAVTEGCQLTIWDLRMKENG-------GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTV 264 (369)
Q Consensus 195 v~~~~~~~~~~~~~-~-lla~s~d~~v~iwD~~~~~~~-------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v 264 (369)
+.... .++. ++. . ++++-++|.|.+||+.++... +.......+ ..+|.++.|.+.- .=++|+.+..+
T Consensus 153 vmc~~-~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 153 VMCQD-KDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred eeeee-cccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeechhhcCCcCCCccccc
Confidence 00111 0111 122 2 334557999999999886210 111122222 5899999998766 77889999999
Q ss_pred EEEeCCCc--eee--eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeee---EcCCC
Q 017601 265 TIYDPRRW--SAL--SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFS---KCSNR 337 (369)
Q Consensus 265 ~vwD~~~~--~~~--~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~---~~~d~ 337 (369)
.+|.+... .+. .+.+-. ...|..+.+-| |++.+|++|.|++||||.+++...+..+.-|+ .++. ..++.
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lk-npGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~ 305 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLK-NPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDC 305 (323)
T ss_pred eeeeeccccCcccccceEEec-CCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCC
Confidence 99988652 221 122222 35689999999 99999999999999999999999999888887 4443 46688
Q ss_pred CEEEEEeCCCcEEEEEC
Q 017601 338 DVLGGWSDSGSIFVADV 354 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~ 354 (369)
.++|++|.|++|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 179
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=6.7e-14 Score=128.27 Aligned_cols=254 Identities=18% Similarity=0.148 Sum_probs=173.5
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-ceeEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-WSMAAV 166 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~a~ 166 (369)
+.+|.|-|+.|.|... +.+|+|++.+-.+.+||.......+. +. .+|...+. -..|-|.. ...+++
T Consensus 138 L~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~---f~-SGH~~Nvf-----QaKFiP~s~d~ti~~ 204 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLS---FE-SGHCNNVF-----QAKFIPFSGDRTIVT 204 (559)
T ss_pred ccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccc---cc-cccccchh-----hhhccCCCCCcCcee
Confidence 4689999999999886 37999999999999999886532211 11 11211111 13355543 345677
Q ss_pred EecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC--
Q 017601 167 ARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG-- 241 (369)
Q Consensus 167 ~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~-- 241 (369)
+ +.||+|++=.+. ....+.+...|...+..++..|++| ..|+++++|+.++-.|+++......+..-..+..
T Consensus 205 ~-s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 205 S-SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred c-cccCceeeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 6 899999987653 2222334445556666666666666 5899999999999999998722111222222201
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEeCCCce------eeeeccccc-----cCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYDPRRWS------ALSRWVHCS-----KYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~------~~~~~~~h~-----~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
-..++++.+|-. .+++|+.|-.+++||.|+-. ++.++..|+ .-.|++++|+. ++.-|+++-.|-.|
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDI 360 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-Cccceeeeecccce
Confidence 257899999988 99999999999999988622 234444331 13599999998 77777777789899
Q ss_pred EEEECcC--C----------ceeE-EEEcCCCeeeeeE----cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 309 FCGQWRE--S----------SKVF-AFRGDSNWLGFSK----CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 309 ~vwd~~~--~----------~~~~-~~~g~~~~~~~~~----~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+++.-.. + .... .|+||.+-..+.- -|...+++|||.-|.|+||+-++++
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 9995432 2 2333 3889985433322 2367899999999999999988876
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6.4e-14 Score=130.47 Aligned_cols=226 Identities=17% Similarity=0.111 Sum_probs=155.0
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc-ccccCCCCCCCCCCeeEEEECCCCce
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT-YSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
.++++.+|.++|-|+++++. ...+.+++-||+|+.|++.....+-+... ..+..+-.++.+.-| ++++|+. ..
T Consensus 336 pi~tfraH~gPVl~v~v~~n----~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw-~l~~s~~-~~ 409 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSN----GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW-LLALSST-KD 409 (577)
T ss_pred eeEEEecccCceEEEEecCC----ceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccccee-eeeeccc-cc
Confidence 55667899999999999886 47999999999999998873322222110 012222334444445 7999995 45
Q ss_pred eEEEEecccceEEEEeCCcc-eEEEE---eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 163 MAAVARSFSKSIDVYDQDIH-LRTLR---TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~-~~~~~---~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
.+++| +.|+++++|+.... ..++. ....|..+.+..+-+ ...++...-+.-.++|+... ..+..+..
T Consensus 410 ~Llsc-s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~-----a~~~~s~~~~~~~~~~~ev~---s~~~~~~s 480 (577)
T KOG0642|consen 410 RLLSC-SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP-----AHSLASFRFGYTSIDDMEVV---SDLLIFES 480 (577)
T ss_pred ceeee-cCCceEEeeccCCcCccccCCccccCCcceEeeccchh-----Hhhhhhcccccccchhhhhh---hheeeccc
Confidence 68888 99999999986422 22221 122345555554311 12222222233344444444 33333321
Q ss_pred cC------CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 239 SV------GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 239 ~~------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.. ...++-+.++|++ +.+++..|+.|+++|..++.+++....| ...++++++-| +|-+|++++.|+.+++|
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai~~-ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAIDP-NGPYLMSGSHDGSVRLW 558 (577)
T ss_pred cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cceecceeecC-CCceEEeecCCceeehh
Confidence 10 1457788899999 9999999999999999999999999999 99999999999 99999999999999999
Q ss_pred ECcCCceeEEEEcCC
Q 017601 312 QWRESSKVFAFRGDS 326 (369)
Q Consensus 312 d~~~~~~~~~~~g~~ 326 (369)
.+....+......|.
T Consensus 559 kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 559 KLDVKTCVLESTAHR 573 (577)
T ss_pred hccchheeecccccc
Confidence 997766665555443
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.7e-12 Score=109.65 Aligned_cols=233 Identities=14% Similarity=0.070 Sum_probs=154.9
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC---CCccccccc--cCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK---DVDRLTYSV--LPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.|.+-+++|. ..+++++..+|.|.++.+..-.. ..++...-+ +.| ++.+..++|+. ..+.++
T Consensus 12 tvf~qa~sp~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah-----dgpiy~~~f~d---~~Lls~- 78 (325)
T KOG0649|consen 12 TVFAQAISPS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH-----DGPIYYLAFHD---DFLLSG- 78 (325)
T ss_pred HHHHHhhCCc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecccc-----CCCeeeeeeeh---hheeec-
Confidence 3555678886 47899999999999998864321 111111111 223 34456799973 355655
Q ss_pred cccceEEEEeCCcceE-----EEEeeeCC--------cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 169 SFSKSIDVYDQDIHLR-----TLRTLWYP--------SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~-----~~~~~~~~--------~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
.||.|+=|.-..... .+-....| -.++..- ..|..+.++.++.|+.+.-||+.++ +...+
T Consensus 79 -gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~---ldP~enSi~~AgGD~~~y~~dlE~G---~i~r~ 151 (325)
T KOG0649|consen 79 -GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMW---LDPSENSILFAGGDGVIYQVDLEDG---RIQRE 151 (325)
T ss_pred -cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeE---eccCCCcEEEecCCeEEEEEEecCC---EEEEE
Confidence 469999886432111 11001111 1122222 2345678888889999999999998 78888
Q ss_pred eeccCCCcEEEEEE-CCCCcEEEEeCCCcEEEEeCCCceeeeeccc---------cccCceEEEEEcCCCCCEEEEEECC
Q 017601 236 ICGSVGDILYAVCS-SSTGNIAVAGADRTVTIYDPRRWSALSRWVH---------CSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 236 ~~~~~~~~v~~v~~-sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~---------h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
+.+| .+.|.++.- +.++.+.+|++||+++|||.++++.+..+.. |....|-+++-+. ..|+.| ..
T Consensus 152 ~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gG 226 (325)
T KOG0649|consen 152 YRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GG 226 (325)
T ss_pred EcCC-cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CC
Confidence 9988 899999987 5555999999999999999999988776542 2123466676554 666655 45
Q ss_pred CeEEEEECcCCceeEEE--EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 306 YEVFCGQWRESSKVFAF--RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~--~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
..+.+|.++..++..+| ++|. ..+.. +.+.++++++.+.|+-|.+.
T Consensus 227 p~lslwhLrsse~t~vfpipa~v--~~v~F--~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFPIPARV--HLVDF--VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceeEEeccCCCceEEEecccce--eEeee--ecceEEEeccccceeeeeec
Confidence 67899999987766665 4554 32222 56778888888889888763
No 182
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=2.1e-14 Score=130.86 Aligned_cols=225 Identities=16% Similarity=0.143 Sum_probs=163.9
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
+.+.|+.++ ..+.-+...|++-.+|..+..- .+.+.- . +-+..+.|-. +++++|++ -.+-+.
T Consensus 133 Y~~~ytrnG----rhlllgGrKGHlAa~Dw~t~~L-----~~Ei~v-----~-Etv~Dv~~LH-neq~~AVA--QK~y~y 194 (545)
T KOG1272|consen 133 YHLDYTRNG----RHLLLGGRKGHLAAFDWVTKKL-----HFEINV-----M-ETVRDVTFLH-NEQFFAVA--QKKYVY 194 (545)
T ss_pred eeeeecCCc----cEEEecCCccceeeeeccccee-----eeeeeh-----h-hhhhhhhhhc-chHHHHhh--hhceEE
Confidence 567777663 5666677889998888765421 111110 0 1133577766 66788987 457799
Q ss_pred EEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 176 VYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 176 lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
|||.. ..+..++.......+.|++++ -.|+++++.|.++--|+.+| +.+..+... .+.+..++-+|-+
T Consensus 195 vYD~~GtElHClk~~~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~G---klVa~~~t~-~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 195 VYDNNGTELHCLKRHIRVARLEFLPYH------FLLVAASEAGFLKYQDVSTG---KLVASIRTG-AGRTDVMKQNPYNA 264 (545)
T ss_pred EecCCCcEEeehhhcCchhhhcccchh------heeeecccCCceEEEeechh---hhhHHHHcc-CCccchhhcCCccc
Confidence 99864 555555555455666777642 24556778899999999999 777776644 4788889999999
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CCCeeeee
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DSNWLGFS 332 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~~~~~~~ 332 (369)
.+-+|...|+|.+|.....+++..+..| .++|.+|++.+ +|+++++.|.|+.++|||++.-..+.++.. |. .+-.
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH-~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~--a~~l 340 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCH-RGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP--ASNL 340 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhc-CCCcceEEECC-CCcEEeecccccceeEeeeccccccceeecCCC--cccc
Confidence 9999999999999999999999999999 99999999999 999999999999999999998766666544 22 1111
Q ss_pred EcCCCCEEEEEeCCCcEEEEE
Q 017601 333 KCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 333 ~~~d~~~l~sgs~dg~I~iWd 353 (369)
.. ..+-++..|....|.||.
T Consensus 341 s~-SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 341 SL-SQKGLLALSYGDHVQIWK 360 (545)
T ss_pred cc-ccccceeeecCCeeeeeh
Confidence 12 234455566677899994
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=9.3e-13 Score=130.56 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=160.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCC-C--CCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSG-K--DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
..|..+.+-.+ .+..++.+++.+|.|++|+-.... + ++...-..+..+..+..+.| .-++|.... +.+.++ +
T Consensus 1110 t~Vs~l~liNe--~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~-G~Ll~t-G 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINE--QDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQS-GHLLVT-G 1184 (1387)
T ss_pred Cccceeeeecc--cchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhC-CeEEec-C
Confidence 55667776443 235678888999999999865332 1 11111111222222222333 235676644 455555 5
Q ss_pred ccceEEEEeCCcceE--EEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc--EE
Q 017601 170 FSKSIDVYDQDIHLR--TLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI--LY 245 (369)
Q Consensus 170 ~d~~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~--v~ 245 (369)
.-+.|+|||..+... .+... ....++.+.. .-..++.++++-.||.|++||.|.......+.....| ... |.
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~--~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h-~~~~~Iv 1260 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYG-SSTLVTALSA--DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREH-NDVEPIV 1260 (1387)
T ss_pred CeeEEEEEecccceeEeecccC-CCccceeecc--cccCCceEEEeecCCceEEeecccCCccccceeeccc-CCcccce
Confidence 689999999875432 22211 2222333221 1123567888889999999999987654555555544 333 99
Q ss_pred EEEECCCC--cEEEEeCCCcEEEEeCCCceeee--ecccccc-C-ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 246 AVCSSSTG--NIAVAGADRTVTIYDPRRWSALS--RWVHCSK-Y-EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~--~~~~h~~-~-~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
-+.+.+.| .|++|+.||.|++||+|...... +...|-. + ..+++..++ +...+|+|+. +.|+||++.. +.+
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G-~~l 1337 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSG-EQL 1337 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecCh-hhh
Confidence 99999999 79999999999999999843222 3334411 2 489999999 8899999998 9999999865 233
Q ss_pred EEEEcCCCe--------eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 320 FAFRGDSNW--------LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~--------~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..++-+..+ .++..-|-.-++|.|+.|.+|.||....++
T Consensus 1338 ~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1338 NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333222211 112222345578999999999999876543
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.53 E-value=3.8e-12 Score=119.89 Aligned_cols=198 Identities=20% Similarity=0.269 Sum_probs=145.9
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeC-C-cceeeeccCCCCCCCC-cEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWY-P-SSLNFVQNLSPVNGGP-NMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~-~lla~s~-d~~v~iwD~~~ 226 (369)
+.++.|.+.+ ..++.+ +.|+.+.+|+.......+..... . ..+...... .+++. .++..+. |+.+.+||...
T Consensus 68 i~~~~~~~~~-~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 68 ITSIAFSPDG-ELLLSG-SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEEECCCC-cEEEEe-cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCccEEEEEecC
Confidence 5578888854 455555 68999999997644322222211 1 122222211 13344 3444455 89999999987
Q ss_pred -ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEE
Q 017601 227 -KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQ 302 (369)
Q Consensus 227 -~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~ 302 (369)
. .....+..+ ...|++++|+|++ .+++++. |+.+++|+++.+..+..+.+| ...|.+++|+| ++. .++++
T Consensus 144 ~~---~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 144 PG---KLIRTLEGH-SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred CC---eEEEEEecC-cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcC-CcceEEEEe
Confidence 4 455556655 5889999999999 8888885 999999999998899999999 99999999999 887 66666
Q ss_pred ECCCeEEEEECcCCceeE-EEEcCCCeeee-eEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 303 GVDYEVFCGQWRESSKVF-AFRGDSNWLGF-SKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~-~~~g~~~~~~~-~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|+.|++||...+.... .+.+|.... + ...+++.++++++.|+.+++|+......
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999999999999877777 688887432 3 3455778899999999999999986653
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=1.6e-11 Score=109.45 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=124.4
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC--cceEE
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRT 185 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~ 185 (369)
...+++.+.-..+.+.+...+ ..+-. +... ..+.+|.++. ++++++ -...|.|||+. +.+.+
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~-~~ICe--~~fp--------t~IL~VrmNr---~RLvV~--Lee~IyIydI~~MklLhT 121 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKK-TTICE--IFFP--------TSILAVRMNR---KRLVVC--LEESIYIYDIKDMKLLHT 121 (391)
T ss_pred eeEEEecCCCceEEEEEcccC-ceEEE--EecC--------CceEEEEEcc---ceEEEE--EcccEEEEecccceeehh
Confidence 344555544445777766643 11211 1111 1244677765 456666 34459999986 33344
Q ss_pred EEee-eCCcceeeeccCCCCCCCCcEEE-EE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC
Q 017601 186 LRTL-WYPSSLNFVQNLSPVNGGPNMLA-VT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD 261 (369)
Q Consensus 186 ~~~~-~~~~~v~~~~~~~~~~~~~~lla-~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D 261 (369)
+.+. .++..+..+. .++++.+++. ++ ..|.|.|||+-+- +++..+..| .+++-|++|+++| +||++|+.
T Consensus 122 I~t~~~n~~gl~AlS---~n~~n~ylAyp~s~t~GdV~l~d~~nl---~~v~~I~aH-~~~lAalafs~~G~llATASeK 194 (391)
T KOG2110|consen 122 IETTPPNPKGLCALS---PNNANCYLAYPGSTTSGDVVLFDTINL---QPVNTINAH-KGPLAALAFSPDGTLLATASEK 194 (391)
T ss_pred hhccCCCccceEeec---cCCCCceEEecCCCCCceEEEEEcccc---eeeeEEEec-CCceeEEEECCCCCEEEEeccC
Confidence 4332 2333332222 1122334443 22 4689999999877 788888766 7999999999999 99999999
Q ss_pred CcE-EEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 262 RTV-TIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 262 ~~v-~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|+| ||+.+.+|+.+.+|. |-..-.|.+++|+| ++++|++.|.-++|.+|.+..
T Consensus 195 GTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 195 GTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEecc
Confidence 986 899999999999987 33234689999999 999999999999999998864
No 186
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=6.2e-13 Score=123.33 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=128.8
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-Ccc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMK 227 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~ 227 (369)
..++++.|-|.++..++++ -.++.+.+||..... ...++ .+... +++..+. |..|-- ++.
T Consensus 220 tsvT~ikWvpg~~~~Fl~a-~~sGnlyly~~~~~~----~~t~p---~~~~~----k~~~~f~-------i~t~ksk~~r 280 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVA-HASGNLYLYDKEIVC----GATAP---SYQAL----KDGDQFA-------ILTSKSKKTR 280 (636)
T ss_pred cceEEEEEEeCCCceEEEE-EecCceEEeeccccc----cCCCC---ccccc----CCCCeeE-------EeeeeccccC
Confidence 3466788888777777776 777888887752110 00011 11110 1122221 111111 111
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..+.-. .+.|+.++|+||| +||+-|.||.+||||..+.+++..++.- -+...+|+||| ||+++++|+.|.
T Consensus 281 ---NPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGLLCvcWSP-DGKyIvtGGEDD 354 (636)
T KOG2394|consen 281 ---NPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGLLCVCWSP-DGKYIVTGGEDD 354 (636)
T ss_pred ---CccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccceEEEEEcC-CccEEEecCCcc
Confidence 345554432 4789999999999 9999999999999999998887777765 67789999999 999999999999
Q ss_pred eEEEEECcCCceeEEEEcCCCeeeeeE-c-----------------------------------CCC-------------
Q 017601 307 EVFCGQWRESSKVFAFRGDSNWLGFSK-C-----------------------------------SNR------------- 337 (369)
Q Consensus 307 ~i~vwd~~~~~~~~~~~g~~~~~~~~~-~-----------------------------------~d~------------- 337 (369)
-|.||.+...+.+..-.||..|..... - .++
T Consensus 355 LVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~ 434 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT 434 (636)
T ss_pred eEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence 999999999988888888988865433 1 011
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 017601 338 DVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 338 ~~l~sgs~dg~I~iWd~~~~ 357 (369)
-.|.|.+.|-.+.+||+...
T Consensus 435 YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 435 YRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred EEeecccccceEEEEecchh
Confidence 25889999999999999654
No 187
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=6.6e-13 Score=123.39 Aligned_cols=219 Identities=17% Similarity=0.118 Sum_probs=141.7
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
++.+|+|-|++++|+.+ +.+|+|++++-++.|||.-.. +.+. ... .+|. ..+.++.|-|.....+++
T Consensus 45 eL~GH~GCVN~LeWn~d----G~lL~SGSDD~r~ivWd~~~~-Kllh--sI~-TgHt-----aNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNAD----GELLASGSDDTRLIVWDPFEY-KLLH--SIS-TGHT-----ANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hhccccceecceeecCC----CCEEeecCCcceEEeecchhc-ceee--eee-cccc-----cceeEEeeeccCCCeEEE
Confidence 47899999999999988 479999999999999998733 1110 010 1121 235579999976555555
Q ss_pred EecccceEEEEeCCc---------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCc----e
Q 017601 167 ARSFSKSIDVYDQDI---------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGG----C 232 (369)
Q Consensus 167 ~~s~d~~i~lwd~~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~----~ 232 (369)
+++.|+.|+|||++. ...+.+... |...+.-+...+.+| ..+.++++||+++-||+|....-. +
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--htfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--HTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC--ceEEEecCCcceeeecccCCccCCccccc
Confidence 559999999999863 111222211 223333444334333 589999999999999999642111 1
Q ss_pred eee---eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--------ce----------eeeec-ccccc-----
Q 017601 233 LHR---ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--------WS----------ALSRW-VHCSK----- 283 (369)
Q Consensus 233 ~~~---~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--------~~----------~~~~~-~~h~~----- 283 (369)
... +... --...|+..+|.. +||+|+.|-.+++||.|. +. ++..+ .+|++
T Consensus 190 ~~~l~ny~~~-lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 190 PSILVNYNPQ-LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred cHHHHHhchh-hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccc
Confidence 111 1111 2357889999998 999999999999999553 11 12222 23421
Q ss_pred -----CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 284 -----YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 284 -----~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
-.++-+.|+| +|.-|+..-..-.|+++|+..++....+
T Consensus 269 ~~~~~~~~t~vtfnp-NGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 269 LDRYITCCTYVTFNP-NGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccceeeeEEEEECC-CCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 1267789999 8776665444457999999876544333
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.49 E-value=2.2e-13 Score=122.40 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=117.9
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCc---e---eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC--------C-
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGG---C---LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR--------R- 271 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~---~---~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~--------~- 271 (369)
+.+++++.|..|+||-+..++..+ . +..+..| ...|+++.|+|+| +||+|+++|.|.+|-.. +
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H-~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRH-TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCceeEEEeecccCC-cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 488889999999999987665433 2 2334555 6899999999999 99999999999999654 2
Q ss_pred -------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEE
Q 017601 272 -------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGW 343 (369)
Q Consensus 272 -------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sg 343 (369)
+.....+.+| ...|..++|+| ++.++++++.|+.+++||+..+.....+.+|..+. ++..-|-+.++++-
T Consensus 106 ~~~~ke~w~v~k~lr~h-~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGH-RDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred hhhCccceEEEEEeccc-ccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhh
Confidence 4455677889 99999999999 99999999999999999999999999998887442 33334567788888
Q ss_pred eCCCcEEEEECCC
Q 017601 344 SDSGSIFVADVVA 356 (369)
Q Consensus 344 s~dg~I~iWd~~~ 356 (369)
|.|...++..+..
T Consensus 184 s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 184 SSDRHPEGFSAKL 196 (434)
T ss_pred ccCcccceeeeee
Confidence 8888776666544
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.49 E-value=4.2e-11 Score=111.66 Aligned_cols=230 Identities=11% Similarity=0.057 Sum_probs=135.6
Q ss_pred EEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCc--ceEEEEeee
Q 017601 113 SVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDI--HLRTLRTLW 190 (369)
Q Consensus 113 s~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~ 190 (369)
+...++.|.+|++... ..+.. ...+. .. ++...++++|++..+++++ ..++.|.+|+.+. .+.......
T Consensus 7 ~~~~~~~I~~~~~~~~-g~l~~-~~~~~-~~-----~~~~~l~~spd~~~lyv~~-~~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 7 ASPESQQIHVWNLNHE-GALTL-LQVVD-VP-----GQVQPMVISPDKRHLYVGV-RPEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EcCCCCCEEEEEECCC-Cceee-eeEEe-cC-----CCCccEEECCCCCEEEEEE-CCCCcEEEEEECCCCceEEeeeec
Confidence 3355688999999632 11111 01111 00 1223689999655444444 6688999998752 122222111
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCccc-CCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEE
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKE-NGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTI 266 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~v 266 (369)
.......+. +++++..+++++. ++.|.+||+.+.. ....+..+.+. ....+++|+|+| ++ ++...++.|.+
T Consensus 78 ~~~~p~~i~---~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 78 LPGSPTHIS---TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCCCceEEE---ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 111122222 3355666776654 8899999997431 11223333333 456788999999 55 55667799999
Q ss_pred EeCCCceeeee-----ccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcC--C--ceeEEEEcC------CCe-e
Q 017601 267 YDPRRWSALSR-----WVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRE--S--SKVFAFRGD------SNW-L 329 (369)
Q Consensus 267 wD~~~~~~~~~-----~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~--~--~~~~~~~g~------~~~-~ 329 (369)
||+.+...+.. ...........+.|+| ++++++++.. +++|.+||++. + +.+..+... .+| .
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 99987332211 1111023467899999 9999988776 89999999974 2 223333221 111 1
Q ss_pred eeeEcCCCCEEEEEeC-CCcEEEEECCCC
Q 017601 330 GFSKCSNRDVLGGWSD-SGSIFVADVVAK 357 (369)
Q Consensus 330 ~~~~~~d~~~l~sgs~-dg~I~iWd~~~~ 357 (369)
.+...+++++|+++.. ++.|.+|++.+.
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 2445679999888864 789999998653
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=133.57 Aligned_cols=245 Identities=14% Similarity=0.102 Sum_probs=165.7
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
+.+|...|+|+.|... +..+.+++++..+.||...+.. ....+.+|.. .++.++.+. +..++|++
T Consensus 186 LlgH~naVyca~fDrt----g~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~-----ditdlavs~-~n~~iaaa 250 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRT----GRYIITGSDDRLVKIWSMETAR-----CLASCRGHSG-----DITDLAVSS-NNTMIAAA 250 (1113)
T ss_pred HHhhhhheeeeeeccc----cceEeecCccceeeeeeccchh-----hhccCCCCcc-----ccchhccch-hhhhhhhc
Confidence 5699999999999876 4788889999999999966541 1223344432 345677776 55677777
Q ss_pred ecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce-----------ee
Q 017601 168 RSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC-----------LH 234 (369)
Q Consensus 168 ~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~-----------~~ 234 (369)
|+|+.|++|-.. ..+..+ ..|...++.+++.|+ .+.++||++++||.+-...... +-
T Consensus 251 -S~D~vIrvWrl~~~~pvsvL--rghtgavtaiafsP~-------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 251 -SNDKVIRVWRLPDGAPVSVL--RGHTGAVTAIAFSPR-------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred -ccCceEEEEecCCCchHHHH--hccccceeeeccCcc-------ccCCCCCceEeccccccccccCCCCCCccccccee
Confidence 999999999864 233333 235556666664332 2668899999999981100000 00
Q ss_pred eee----------ccC-----CCcEEEEEECCCC-cEEEEe-----------CCCcEEEEeCCCceeeeeccccccCceE
Q 017601 235 RIC----------GSV-----GDILYAVCSSSTG-NIAVAG-----------ADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 235 ~~~----------~~~-----~~~v~~v~~sp~g-~lasgs-----------~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.+. +.. ...+-+++|.... .+++.+ .+-.+++|++-++..++.+.+| .+++.
T Consensus 321 s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~gh-sd~~y 399 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGH-SDEVY 399 (1113)
T ss_pred eeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccc-cccee
Confidence 000 000 0122233444444 344443 4555788999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
-+.++|.+.....+++.||...|||+-.+-.++.+ .||.....-..+.||..++....-|.++|.....++
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999999999999999999999988777666 466522222225588888888788999998765554
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.9e-11 Score=108.97 Aligned_cols=235 Identities=16% Similarity=0.219 Sum_probs=155.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc-
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS- 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d- 171 (369)
..|+.+.|..+ ...|..++.+| ..++......+ .+ +... ....+.-.-|+. .++|.. +.+
T Consensus 6 ~ti~~~~~Nqd----~~~lsvGs~~G-yk~~~~~~~~k-----~~----~~~~-~~~~IvEmLFSS---SLvaiV-~~~q 66 (391)
T KOG2110|consen 6 PTINFIGFNQD----STLLSVGSKDG-YKIFSCSPFEK-----CF----SKDT-EGVSIVEMLFSS---SLVAIV-SIKQ 66 (391)
T ss_pred cceeeeeeccc----eeEEEccCCCc-eeEEecCchHH-----hh----cccC-CCeEEEEeeccc---ceeEEE-ecCC
Confidence 44566667665 35666677766 34454442210 01 1000 001122233544 345544 233
Q ss_pred -ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEEEEE
Q 017601 172 -KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILYAVC 248 (369)
Q Consensus 172 -~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~~v~ 248 (369)
+.+++++..+..... ....+..+-.+.. .-++|+.+-++. |.|||+++. +.++++..- +...+.+++
T Consensus 67 pr~Lkv~~~Kk~~~IC-e~~fpt~IL~Vrm-----Nr~RLvV~Lee~-IyIydI~~M---klLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTIC-EIFFPTSILAVRM-----NRKRLVVCLEES-IYIYDIKDM---KLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred CceEEEEEcccCceEE-EEecCCceEEEEE-----ccceEEEEEccc-EEEEecccc---eeehhhhccCCCccceEeec
Confidence 347777765433222 2223444333332 135787777665 999999988 788776532 134566677
Q ss_pred ECCCC-cEEEEe--CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe-EEEEECcCCceeEEEEc
Q 017601 249 SSSTG-NIAVAG--ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE-VFCGQWRESSKVFAFRG 324 (369)
Q Consensus 249 ~sp~g-~lasgs--~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~-i~vwd~~~~~~~~~~~g 324 (369)
+++.+ ++|--+ ..|.|.|||+.+-+++.++..| ++++-+++|+| +|.+||++|..|+ |||+.+.++..++.|+-
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 77777 777643 3688999999999999999999 99999999999 9999999999996 79999999999999964
Q ss_pred CCCee---eeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 325 DSNWL---GFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 325 ~~~~~---~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
-.... .+...+|+.+|++.|..++|.|+.++...
T Consensus 215 G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 215 GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 43222 33346699999999999999999987643
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=8.1e-13 Score=123.20 Aligned_cols=253 Identities=12% Similarity=0.075 Sum_probs=164.0
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCC---CCccccccccCCCCCCCCCCeeEEEECCCCce
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGK---DVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWS 162 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 162 (369)
+++..|.+.|+.++|.+-+ -.+++++.+|.+.+|++++... ..-...+.+..| ++.+.++++.+ +..
T Consensus 288 ~tl~s~~d~ir~l~~~~se----p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-----~gPVl~v~v~~-n~~ 357 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSE----PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-----EGPVLCVVVPS-NGE 357 (577)
T ss_pred eeeecchhhhhhhhcCCCC----CeEEEeccccchhhhhhcccCCccccceeeeEEEecc-----cCceEEEEecC-Cce
Confidence 3567899999999998864 5888999999999999954211 111122444444 34566899988 455
Q ss_pred eEEEEecccceEEEEeCCcce--------EEE--EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 163 MAAVARSFSKSIDVYDQDIHL--------RTL--RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~~~--------~~~--~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.+.++ +.|++|+.|++.... ..+ ....|..++.-+.++. ...+|++++.||++++|+..... .+
T Consensus 358 ~~ysg-g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~~~~--~~ 431 (577)
T KOG0642|consen 358 HCYSG-GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPTEES--PC 431 (577)
T ss_pred EEEee-ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc---cccceeeecCCceEEeeccCCcC--cc
Confidence 67777 899999999653111 111 1122334443333322 24589999999999999987652 12
Q ss_pred eee-eeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHR-ICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~-~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s 303 (369)
... ...+ +.-.+++|-... ..++...-+.-.++|+...+.+..+..- ....+.-+.++| ...+.+++.
T Consensus 432 ~f~~~~e~--g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~h 508 (577)
T KOG0642|consen 432 TFGEPKEH--GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAH 508 (577)
T ss_pred ccCCcccc--CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecc
Confidence 211 1222 444566664333 2222222222334444444444333311 024577888999 889999999
Q ss_pred CCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|+.|+++|..+++.++....|. ..+.. .++|-+|++|+.||.+++|.+..+..
T Consensus 509 ed~~Ir~~dn~~~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred cCCceecccccccccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999998887 44444 45899999999999999999866543
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.45 E-value=1.1e-12 Score=117.97 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=123.2
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC-----c---ceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEcCCeEEE
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD-----I---HLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTI 221 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-----~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~i 221 (369)
|..+.|.+...+.+|++ +.|..|+||-+. . .+.-+..+ .|...++.+. |++++..|++++++|.+.|
T Consensus 16 v~s~dfq~n~~~~laT~-G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR---f~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATA-GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR---FSPDGELLASGGDGGEVFL 91 (434)
T ss_pred eEEEEeccCcccceecc-cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE---EcCCcCeeeecCCCceEEE
Confidence 66799998766689998 899999999642 1 22222222 3556666666 4566778888999999999
Q ss_pred EeCC--------c-----ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 222 WDLR--------M-----KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 222 wD~~--------~-----~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
|-.. + .+.....+.+.+| ...|+.++|+|++ .+++|+.|.++++||++.|+.+..+..| ...|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h-~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGH-RDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccc-ccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccccc
Confidence 9765 2 1111223344455 6899999999999 9999999999999999999999999999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.++|.| -.+++++-|.|...+.+.+..
T Consensus 170 gvawDp-l~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 170 GVAWDP-LNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeecch-hhhhhhhhccCcccceeeeee
Confidence 999999 889999999999777776654
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.44 E-value=3.4e-12 Score=121.10 Aligned_cols=268 Identities=16% Similarity=0.238 Sum_probs=177.8
Q ss_pred EecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEE
Q 017601 35 HVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV 114 (369)
Q Consensus 35 ~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~ 114 (369)
.+-++|.+ +++|.|++++..++. + + ...-.+.+|++.|++++|+.|+ .+.||+
T Consensus 19 afkPDGsq--L~lAAg~rlliyD~n----------d----------G-~llqtLKgHKDtVycVAys~dG----krFASG 71 (1081)
T KOG1538|consen 19 AFKPDGTQ--LILAAGSRLLVYDTS----------D----------G-TLLQPLKGHKDTVYCVAYAKDG----KRFASG 71 (1081)
T ss_pred EECCCCce--EEEecCCEEEEEeCC----------C----------c-ccccccccccceEEEEEEccCC----ceeccC
Confidence 34566644 578888888766621 1 1 0122367999999999999984 899999
Q ss_pred ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCc
Q 017601 115 DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPS 193 (369)
Q Consensus 115 d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~ 193 (369)
+.+..|.+|+-.-.+ ..+|. |... +-+..|+|-. ..+++| +. ...-+|..+ +.+...+ ...
T Consensus 72 ~aDK~VI~W~~klEG----~LkYS---H~D~-----IQCMsFNP~~-h~LasC-sL-sdFglWS~~qK~V~K~k---ss~ 133 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEG----ILKYS---HNDA-----IQCMSFNPIT-HQLASC-SL-SDFGLWSPEQKSVSKHK---SSS 133 (1081)
T ss_pred CCceeEEEecccccc----eeeec---cCCe-----eeEeecCchH-HHhhhc-ch-hhccccChhhhhHHhhh---hhe
Confidence 999999999865331 12333 2222 4489999954 467777 32 346678654 2222211 122
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC------cEEEEeCCCcEEEE
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG------NIAVAGADRTVTIY 267 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g------~lasgs~D~~v~vw 267 (369)
.+..+.| .+||+.++-+-.+|+|.|-+-. ++....+.+.-+. ..+|++++|+|.. .+++..+..|+..|
T Consensus 134 R~~~CsW---tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 134 RIICCSW---TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAVADWGQTLSFY 208 (1081)
T ss_pred eEEEeee---cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCC-CCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence 2333333 2466666667789999998643 3211223332233 6899999999974 78889999999988
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~d 346 (369)
.+. |+.+..-..- ...-.++.+.| +|.+++.||.|+.+.++. +.|-.+-+......|. .+..-|++..++.|+.|
T Consensus 209 ~Ls-G~~Igk~r~L-~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 209 QLS-GKQIGKDRAL-NFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred Eec-ceeecccccC-CCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 864 5555433333 45567889999 999999999999999985 4455555553333343 44556799999999999
Q ss_pred CcEEEEECCC
Q 017601 347 GSIFVADVVA 356 (369)
Q Consensus 347 g~I~iWd~~~ 356 (369)
|+|--|++..
T Consensus 285 GTiACyNl~f 294 (1081)
T KOG1538|consen 285 GTIACYNLIF 294 (1081)
T ss_pred CeeehhhhHH
Confidence 9999888653
No 195
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.1e-11 Score=115.94 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=157.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc------cccc----------cCCCC---
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL------TYSV----------LPQDC--- 144 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~------~~~~----------~~~~~--- 144 (369)
..++-..|...-+.|..+||+ ..++|++--.-.|.+||+..-.-....+ .+.+ ...+.
T Consensus 43 eLiQdfe~p~ast~ik~s~DG---qY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDG---QYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred HHHHhcCCccccceeEecCCC---cEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence 344456888999999999995 5788999888899999986532111000 0000 00000
Q ss_pred CCCCCC-e---------eEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEE
Q 017601 145 GVGEGS-W---------SGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA 212 (369)
Q Consensus 145 ~~~~~~-~---------~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla 212 (369)
-+...| + ..++++.-.-.++.++ + ...|.-+++. ..+.++.+.. ..++.+. .++..+.|++
T Consensus 120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-s-g~evYRlNLEqGrfL~P~~~~~--~~lN~v~---in~~hgLla~ 192 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-S-GSEVYRLNLEQGRFLNPFETDS--GELNVVS---INEEHGLLAC 192 (703)
T ss_pred ehhhcCeeeeeecCcCCccccccCCCccEEEee-c-CcceEEEEcccccccccccccc--ccceeee---ecCccceEEe
Confidence 000011 0 1244443333344444 2 2234444443 3444443322 2333333 2233445555
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccC----------CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-c
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSV----------GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-H 280 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~----------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~ 280 (369)
++.+|.|..||.|+.. .+.++.... ...|+++.|+.+| .+++|..+|.|.|||+|+.+++..-. +
T Consensus 193 Gt~~g~VEfwDpR~ks---rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKS---RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred cccCceEEEecchhhh---hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 6679999999999883 343333210 1349999999999 99999999999999999988876533 2
Q ss_pred cccCceEEEEEcCCCCC-EEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 281 CSKYEITGLSFSSIDSN-YIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~-~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. .-+|..+.|.+.+++ .++| .....++|||-.+++....+........+...+++.+++++-++..+..|=+.
T Consensus 270 ~-e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 270 Y-ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred C-ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 3 567999999884333 3333 23457899999999988887655433444445688899999998877665443
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.9e-12 Score=113.86 Aligned_cols=196 Identities=21% Similarity=0.217 Sum_probs=132.5
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
..++|+.++ ..++++..+|.+++|+...... + .+. ..| +..+..+.|+|+ ...+++- +.| ..+
T Consensus 148 k~vaf~~~g----s~latgg~dg~lRv~~~Ps~~t-~---l~e-~~~-----~~eV~DL~FS~d-gk~lasi-g~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG----SKLATGGTDGTLRVWEWPSMLT-I---LEE-IAH-----HAEVKDLDFSPD-GKFLASI-GAD-SAR 210 (398)
T ss_pred eEEEEcCCC----CEeeeccccceEEEEecCcchh-h---hhh-Hhh-----cCccccceeCCC-CcEEEEe-cCC-ceE
Confidence 678998874 6999999999999999653211 0 111 111 123558999994 5566766 667 899
Q ss_pred EEeCCcc--eEEEEeeeCC---cceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCcee---eeeeccCCCcEE
Q 017601 176 VYDQDIH--LRTLRTLWYP---SSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCL---HRICGSVGDILY 245 (369)
Q Consensus 176 lwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~---~~~~~~~~~~v~ 245 (369)
||+.... +......... ..+.|..... ....++++. ..+.|+.||+........+ +.+... ..|+
T Consensus 211 VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~---~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~--~siS 285 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPFSKDEMFSSCRFSVDNA---QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF--KSIS 285 (398)
T ss_pred EEEeccCchhhhcCCcccchhhhhceecccCC---CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc--Ccce
Confidence 9997532 2222111111 2344443211 113444433 3467888877654321111 122233 6899
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+++.+++| ++|.|+.||.|.|++..+.+.++-.+ .| ..-|+.|.|+| |.+++++.|.|.++.+.-+.-
T Consensus 286 sl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH-~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 286 SLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAH-LGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhh-eeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 99999999 99999999999999999988877555 67 88999999999 999999999999999987754
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.6e-11 Score=116.07 Aligned_cols=209 Identities=13% Similarity=0.001 Sum_probs=127.9
Q ss_pred CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc--cceEEEEeCCcc-eEEEEeeeC-C
Q 017601 117 YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH-LRTLRTLWY-P 192 (369)
Q Consensus 117 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~-~~~~~~~~~-~ 192 (369)
+.+|++||.+.... ..+..+. ..+...+|+|++. .++.++.. +.+|.+||.... .+.+..... .
T Consensus 183 ~~~i~i~d~dg~~~------~~lt~~~-----~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~ 250 (429)
T PRK01742 183 PYEVRVADYDGFNQ------FIVNRSS-----QPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN 250 (429)
T ss_pred eEEEEEECCCCCCc------eEeccCC-----CccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc
Confidence 36899999874421 1111111 1244799999654 55555222 247999997532 222322211 1
Q ss_pred cceeeeccCCCCCCCCcEEEEE-cCCeEEEE--eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCCcEEEE
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIW--DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADRTVTIY 267 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s-~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vw 267 (369)
..+ .++||+..|+.++ .++.+.|| |+.++ . +..+..+ ...+.+.+|+||| .|+..+ .++...||
T Consensus 251 ~~~------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~-~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 251 GAP------AFSPDGSRLAFASSKDGVLNIYVMGANGG---T-PSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred Cce------eECCCCCEEEEEEecCCcEEEEEEECCCC---C-eEeeccC-CCCcCCEEECCCCCEEEEEECCCCCceEE
Confidence 122 2446777777765 57766665 65554 3 3444443 3567889999999 665544 67888999
Q ss_pred eCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC
Q 017601 268 DPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS 346 (369)
Q Consensus 268 D~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d 346 (369)
++... .....+ ++ .. ....|+| ||+.|+..+.++ +.+||+.+++.......... .....++||++|+.++.+
T Consensus 320 ~~~~~~~~~~~l-~~-~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 320 RMSASGGGASLV-GG-RG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-ESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred EEECCCCCeEEe-cC-CC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-CCceECCCCCEEEEEEcC
Confidence 87542 222222 44 33 4678999 999998888765 55599988765433322221 233457799999999999
Q ss_pred CcEEEEECC
Q 017601 347 GSIFVADVV 355 (369)
Q Consensus 347 g~I~iWd~~ 355 (369)
+.+.+|++.
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 999888763
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=4.7e-11 Score=116.01 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=153.0
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCC--CCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQD--CGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~~a 165 (369)
...|...|..+.|-.+.. ..-+.|++.||.|..|+++.-....+........+. ......+.++++|.+.++..++
T Consensus 287 ~~sh~~~v~~vvW~~~~~--~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQNEH--NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccCCcCeEEEEEeccCC--CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 357999999999987642 256778888999999987754322222111111111 1122345678999999999999
Q ss_pred EEecccceEEE-EeCC--cce----EEE-EeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC-cccCCceeeee
Q 017601 166 VARSFSKSIDV-YDQD--IHL----RTL-RTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR-MKENGGCLHRI 236 (369)
Q Consensus 166 ~~~s~d~~i~l-wd~~--~~~----~~~-~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~-~~~~~~~~~~~ 236 (369)
+| .++|.|.- -..+ ... ... ....|...+..+...||.+ ..+++++ |-+++||... .. .++..+
T Consensus 365 VG-Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~---~Pl~~~ 437 (555)
T KOG1587|consen 365 VG-TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA---SPLLSL 437 (555)
T ss_pred EE-cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC---Ccchhh
Confidence 98 88998766 2222 111 111 1222556777777777766 3566665 8999999877 33 566655
Q ss_pred eccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 237 CGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
..+ ...|++++|||.- .|+++..||.|.+||+.. ..++.+..-+ ....+.+.|++ .|+.|+.|..-|++.+|+
T Consensus 438 ~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 438 DSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred hhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 544 4669999999998 899999999999999976 4566666666 56677888888 999999999999999999
Q ss_pred CcC
Q 017601 313 WRE 315 (369)
Q Consensus 313 ~~~ 315 (369)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 964
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=3.5e-11 Score=103.12 Aligned_cols=153 Identities=14% Similarity=0.238 Sum_probs=103.6
Q ss_pred EEEECCCCceeEEEEe-ccc-------ceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeE
Q 017601 153 GLCFSPSQWSMAAVAR-SFS-------KSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQL 219 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~-s~d-------~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v 219 (369)
.+.|+|.+..+++... ..| +...||.++ .....+.... ...+..+.+. |++..|+.+. .+.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~Ws---P~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWS---PNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEEC---cCCCEEEEEEccCCccc
Confidence 5788887776655552 112 234555432 2233332221 1235555554 4566776653 46799
Q ss_pred EEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCCceeeeeccccccCceEEEEEcCCC
Q 017601 220 TIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID 295 (369)
Q Consensus 220 ~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d 295 (369)
.|||++ . +.+..+. . ..++.+.|||+| +|++|+. .|.|.+||+++.+.+.+... ..++.++||| |
T Consensus 86 ~lyd~~-~---~~i~~~~-~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsP-d 154 (194)
T PF08662_consen 86 TLYDVK-G---KKIFSFG-T--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSP-D 154 (194)
T ss_pred EEEcCc-c---cEeEeec-C--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcC-C
Confidence 999997 3 5666664 3 678999999999 8888764 46799999999888887653 3579999999 9
Q ss_pred CCEEEEEEC------CCeEEEEECcCCceeEE
Q 017601 296 SNYIYVQGV------DYEVFCGQWRESSKVFA 321 (369)
Q Consensus 296 ~~~l~s~s~------D~~i~vwd~~~~~~~~~ 321 (369)
|++|+++.. |+.++||+.. |+++..
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 999999864 8899999985 444444
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.3e-11 Score=104.26 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=97.3
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
+...||-++..+ ..+..+.....++|.+++|+|+| .||+ |..++.|.+||++ ++.+.++. ...+..+.|||
T Consensus 37 ~~~~l~~~~~~~--~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP 110 (194)
T PF08662_consen 37 GEFELFYLNEKN--IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSP 110 (194)
T ss_pred eeEEEEEEecCC--CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECC
Confidence 356666665432 34444443213679999999999 6543 5567899999997 66676665 45678999999
Q ss_pred CCCCEEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC------CCcEEEEECC
Q 017601 294 IDSNYIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD------SGSIFVADVV 355 (369)
Q Consensus 294 ~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~------dg~I~iWd~~ 355 (369)
+|++|+.++.+ |.+.+||.++.+.+..+.... ...+..+|||++|++++. |+.++||+..
T Consensus 111 -~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 111 -DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99999998865 569999999888887775332 345556889999998874 7899999985
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=4.7e-10 Score=94.98 Aligned_cols=242 Identities=13% Similarity=0.140 Sum_probs=145.8
Q ss_pred cccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc-ccccccc-C-CCCCCCCCCeeEEEECCCC
Q 017601 84 SMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD-RLTYSVL-P-QDCGVGEGSWSGLCFSPSQ 160 (369)
Q Consensus 84 ~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~~~l~~~p~~ 160 (369)
.++...+|.+.|+.++|..+ .+|..+| |.|+-|......+... ...+.+. | +.....-..+.++...|..
T Consensus 54 ~iv~eqahdgpiy~~~f~d~-----~Lls~gd--G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFHDD-----FLLSGGD--GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred ceeeccccCCCeeeeeeehh-----heeeccC--ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence 44445899999999999864 3444444 8887777654321110 1111111 1 1212222346678888866
Q ss_pred ceeEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 161 WSMAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
+.++.. +.|+.+.-||++. ..+.++. |..-+..+. .-+..+.++++++||++||||.+++ ++++.+..
T Consensus 127 nSi~~A--gGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv---~R~~~~qilsG~EDGtvRvWd~kt~---k~v~~ie~ 196 (325)
T KOG0649|consen 127 NSILFA--GGDGVIYQVDLEDGRIQREYRG--HTDYVHSVV---GRNANGQILSGAEDGTVRVWDTKTQ---KHVSMIEP 196 (325)
T ss_pred CcEEEe--cCCeEEEEEEecCCEEEEEEcC--Ccceeeeee---ecccCcceeecCCCccEEEEecccc---ceeEEecc
Confidence 655544 3689999999863 3333332 332222222 2123569999999999999999999 77766542
Q ss_pred c---------CCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 239 S---------VGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 239 ~---------~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
. .+..|.+++-+.+ ++++|+ ...+.+|.+|..++...+.- ...|..+.|-. ..+++++.-+.|.
T Consensus 197 yk~~~~lRp~~g~wigala~~ed-WlvCGg-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~---d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNED-WLVCGG-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVD---DCVLIGGEGNHVQ 269 (325)
T ss_pred ccChhhcCcccCceeEEEeccCc-eEEecC-CCceeEEeccCCCceEEEec--ccceeEeeeec---ceEEEecccccee
Confidence 1 1345666664322 777765 45689999999888776653 24578888855 6788899889999
Q ss_pred EEECcCCceeEEEE-cCCCeeeeeE-cC--CCCEEEEEeCCCcEEEE
Q 017601 310 CGQWRESSKVFAFR-GDSNWLGFSK-CS--NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 310 vwd~~~~~~~~~~~-g~~~~~~~~~-~~--d~~~l~sgs~dg~I~iW 352 (369)
-|.+.. .+..... ++. ..... .. --++|-.++..+.+.|.
T Consensus 270 ~~~l~G-vl~a~ip~~s~--~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 270 SYTLNG-VLQANIPVEST--ACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eeeecc-EEEEeccCCcc--ceeeecccCCceEEEEecccceeeeee
Confidence 998754 2222222 222 11111 11 12455566666666665
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=116.80 Aligned_cols=225 Identities=10% Similarity=0.098 Sum_probs=143.4
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
.|+.++|.||+ ..++.++++ ++.++|...+.. -..+.+|... +.+++|+. ++..+|++ +.|+.
T Consensus 14 ci~d~afkPDG---sqL~lAAg~--rlliyD~ndG~l-----lqtLKgHKDt-----VycVAys~-dGkrFASG-~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDG---TQLILAAGS--RLLVYDTSDGTL-----LQPLKGHKDT-----VYCVAYAK-DGKRFASG-SADKS 76 (1081)
T ss_pred chheeEECCCC---ceEEEecCC--EEEEEeCCCccc-----ccccccccce-----EEEEEEcc-CCceeccC-CCcee
Confidence 89999999996 344444333 699999886621 1223344332 45899999 56689998 99999
Q ss_pred EEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC
Q 017601 174 IDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG 253 (369)
Q Consensus 174 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g 253 (369)
|.+|.... .-.+ ...|...+.+.. |+|-...|++++- ...-+|..... .+...... ..+.+++|..||
T Consensus 77 VI~W~~kl-EG~L-kYSH~D~IQCMs---FNP~~h~LasCsL-sdFglWS~~qK----~V~K~kss--~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 77 VIIWTSKL-EGIL-KYSHNDAIQCMS---FNPITHQLASCSL-SDFGLWSPEQK----SVSKHKSS--SRIICCSWTNDG 144 (1081)
T ss_pred EEEecccc-ccee-eeccCCeeeEee---cCchHHHhhhcch-hhccccChhhh----hHHhhhhh--eeEEEeeecCCC
Confidence 99997531 1112 233445555554 4454556777664 34668977653 34333333 789999999999
Q ss_pred -cEEEEeCCCcEEEEeCCCceeeeec---cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcC----
Q 017601 254 -NIAVAGADRTVTIYDPRRWSALSRW---VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGD---- 325 (369)
Q Consensus 254 -~lasgs~D~~v~vwD~~~~~~~~~~---~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~---- 325 (369)
+++.|-.||||.+-+. ++++...+ -|. ..+|.+++|+|..+ -|.+..+-+-||...-..+.+.|.
T Consensus 145 qylalG~~nGTIsiRNk-~gEek~~I~Rpgg~-Nspiwsi~~~p~sg-----~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 145 QYLALGMFNGTISIRNK-NGEEKVKIERPGGS-NSPIWSICWNPSSG-----EGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred cEEEEeccCceEEeecC-CCCcceEEeCCCCC-CCCceEEEecCCCC-----CCccceEEEEeccceeEEEEecceeecc
Confidence 9999999999998753 34443333 355 78999999999433 233344444454432222222221
Q ss_pred CCe-----eeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 326 SNW-----LGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 326 ~~~-----~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.+- ..+..+++|+++..|+.|+.+.++--
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 100 23444669999999999999988853
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=113.94 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 203 PVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
|++|+..|++++.||.+||||..+. ..+..++ .+-+...|++||||| +|++|++|--|.||.+...+.+..-.+|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH 373 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH 373 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHH---HHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc
Confidence 4468889999999999999999886 3333332 235779999999999 9999999999999999999999999999
Q ss_pred ccCceEEEEEcCC----------------------------------CC-------------CEEEEEECCCeEEEEECc
Q 017601 282 SKYEITGLSFSSI----------------------------------DS-------------NYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 282 ~~~~v~~l~~sp~----------------------------------d~-------------~~l~s~s~D~~i~vwd~~ 314 (369)
+..|..|+|.|. ++ -.+.|.+.|..+++||+.
T Consensus 374 -kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 374 -KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred -ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 999999999831 01 247889999999999997
Q ss_pred CC
Q 017601 315 ES 316 (369)
Q Consensus 315 ~~ 316 (369)
..
T Consensus 453 eD 454 (636)
T KOG2394|consen 453 ED 454 (636)
T ss_pred hh
Confidence 64
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.5e-11 Score=117.21 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=126.9
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEec---CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDS---YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
+..|...|.+.+|+||+ ..|+..+. ...|++||+.++.. ..+.... + ....++|+|++. .+
T Consensus 199 lt~~~~~v~~p~wSPDG----~~la~~s~~~~~~~i~i~dl~tg~~------~~l~~~~-g----~~~~~~wSPDG~-~L 262 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDG----SKLAYVSFENKKSQLVVHDLRSGAR------KVVASFR-G----HNGAPAFSPDGS-RL 262 (429)
T ss_pred eccCCCccccceEcCCC----CEEEEEEecCCCcEEEEEeCCCCce------EEEecCC-C----ccCceeECCCCC-EE
Confidence 34677789999999985 44554432 34699999875421 0111100 0 112589999654 45
Q ss_pred EEEecccceEEEE--eCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccC
Q 017601 165 AVARSFSKSIDVY--DQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 165 a~~~s~d~~i~lw--d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
+.+.+.++.+.|| |.. ...+.+.. +........ ++||+..++.++ .++..+||++.... .....+.+.
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~~---wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l~~~- 334 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQLTS--GAGNNTEPS---WSPDGQSILFTSDRSGSPQVYRMSASG--GGASLVGGR- 334 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEeecc--CCCCcCCEE---ECCCCCEEEEEECCCCCceEEEEECCC--CCeEEecCC-
Confidence 5543667877776 543 23333321 221111122 346777777666 46888999876431 223333222
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc--CCc
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR--ESS 317 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~--~~~ 317 (369)
. ++.+|+|+| .|+..+.++ +.+||+.+++.......+ ...++.|+| |+++|+.++.++.+.+|++. .++
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCC
Confidence 2 567899999 887777766 455999887654322222 235678999 99999999999999988863 467
Q ss_pred eeEEEEcCC
Q 017601 318 KVFAFRGDS 326 (369)
Q Consensus 318 ~~~~~~g~~ 326 (369)
..+.+.+|.
T Consensus 407 ~~~~l~~~~ 415 (429)
T PRK01742 407 FKARLPGSD 415 (429)
T ss_pred ceEEccCCC
Confidence 777776665
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.8e-11 Score=110.80 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=137.9
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
.++|++ ++..++++ +.|+++|+|+.+.....+....+...+..+. |++|+..|++.+.| ..+|||.+++ .+
T Consensus 149 ~vaf~~-~gs~latg-g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~---FS~dgk~lasig~d-~~~VW~~~~g---~~ 219 (398)
T KOG0771|consen 149 VVAFNG-DGSKLATG-GTDGTLRVWEWPSMLTILEEIAHHAEVKDLD---FSPDGKFLASIGAD-SARVWSVNTG---AA 219 (398)
T ss_pred EEEEcC-CCCEeeec-cccceEEEEecCcchhhhhhHhhcCccccce---eCCCCcEEEEecCC-ceEEEEeccC---ch
Confidence 589999 45678888 8999999999665444443444555555555 56677788889988 9999999998 66
Q ss_pred eeeeeccC-CCcEEEEEECCCC-----cEEE-EeCCCcEEEEeCCCcee-----eeeccccccCceEEEEEcCCCCCEEE
Q 017601 233 LHRICGSV-GDILYAVCSSSTG-----NIAV-AGADRTVTIYDPRRWSA-----LSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 233 ~~~~~~~~-~~~v~~v~~sp~g-----~las-gs~D~~v~vwD~~~~~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
+++..... ...+..+.|+.++ ++|+ ...-+.|+.||+..+.- ..+...- ...|++++.|+ +|++++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~-dGkf~A 297 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSD-DGKFLA 297 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcC-CCcEEE
Confidence 66544211 2456667887765 3333 34556788888765332 1111122 25799999999 999999
Q ss_pred EEECCCeEEEEECcCCceeEEE-EcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 301 VQGVDYEVFCGQWRESSKVFAF-RGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~~~~~-~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.|+.||.|-|++..+-++++.. +.|... .+++.+||.+.+++.|.|..+.+-.+.-
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999886666555 457622 2455588999999999999998887654
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.35 E-value=2e-10 Score=100.63 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=113.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEE--EcCCeEEEEeCC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV--TEGCQLTIWDLR 225 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~--s~d~~v~iwD~~ 225 (369)
+.++.+.++ .+++. ....|.+|... +..+.+.+...|..+..+... .+..+++. -.-|+|+|-|+.
T Consensus 97 I~~V~l~r~---riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~----~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 97 IKAVKLRRD---RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT----SNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred eeeEEEcCC---eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCC----CCceEEEcCCCccceEEEEEhh
Confidence 557888772 34443 46789999765 455555555566665444321 13456663 346899999998
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcE-EEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTV-TIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v-~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
..+.+ .-..+..| ...|.|++.+-+| ++||+|..||+ +|||.++++.+.++. |-....|.+++||| +..+|+.+
T Consensus 168 ~~~~~-~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~Lavs 244 (346)
T KOG2111|consen 168 STKPN-APSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVS 244 (346)
T ss_pred hcCcC-CceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEE
Confidence 66322 12334444 5999999999999 99999999985 999999999999887 32246799999999 99999999
Q ss_pred ECCCeEEEEECcC
Q 017601 303 GVDYEVFCGQWRE 315 (369)
Q Consensus 303 s~D~~i~vwd~~~ 315 (369)
|.-|++.||.++.
T Consensus 245 SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCeEEEEEeec
Confidence 9999999999876
No 207
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.33 E-value=6.3e-11 Score=101.31 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=101.9
Q ss_pred ceeEEEEecccceEEEEeCCcceEEEEeee----------CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLRTLRTLW----------YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
...++.++.+++.+-+||.......+...+ +...+..+.+ .+....=++++.+..+..|.+.... +
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy---as~~~rGisgga~dkl~~~Sl~~s~-g 239 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY---ASSCDRGISGGADDKLVMYSLNHST-G 239 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee---chhhcCCcCCCccccceeeeecccc-C
Confidence 345566658899999999865433322211 1111212221 1111233445556678888876431 1
Q ss_pred ce-e-eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 231 GC-L-HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 231 ~~-~-~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
.+ + ..+... .-.|..+..-||+ .+|++++|+.|+||..++..++..++-| ...|++++|+| +...+|++|.|.+
T Consensus 240 slq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfsp-d~~lmAaaskD~r 316 (323)
T KOG0322|consen 240 SLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSP-DCELMAAASKDAR 316 (323)
T ss_pred cccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCC-CCchhhhccCCce
Confidence 11 1 112222 2567888999999 9999999999999999999999999999 89999999999 9999999999999
Q ss_pred EEEEEC
Q 017601 308 VFCGQW 313 (369)
Q Consensus 308 i~vwd~ 313 (369)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=5.2e-11 Score=105.26 Aligned_cols=253 Identities=13% Similarity=0.133 Sum_probs=157.4
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc----ccCCCCCC-------CCCCeeEEEECCCCc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS----VLPQDCGV-------GEGSWSGLCFSPSQW 161 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~l~~~p~~~ 161 (369)
+-|.+|.|... +.+||++|..|+|-++.-+...+. .|. .+.|.... -++-+..+.|.++++
T Consensus 26 diis~vef~~~----Ge~LatGdkgGRVv~f~r~~~~~~----ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHY----GERLATGDKGGRVVLFEREKLYKG----EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecc----cceEeecCCCCeEEEeeccccccc----ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 55778999887 479999999999999877654321 111 12222111 122345677776544
Q ss_pred -eeEEEEecccceEEEEeCCcc-----------------eEEEEe-------------------eeCCcceeeeccCCCC
Q 017601 162 -SMAAVARSFSKSIDVYDQDIH-----------------LRTLRT-------------------LWYPSSLNFVQNLSPV 204 (369)
Q Consensus 162 -~~~a~~~s~d~~i~lwd~~~~-----------------~~~~~~-------------------~~~~~~v~~~~~~~~~ 204 (369)
..+... ..|++|++|.+... +..++. ..|+..++.+. ++
T Consensus 98 ~a~FLls-tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS---~N 173 (433)
T KOG1354|consen 98 LAEFLLS-TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS---VN 173 (433)
T ss_pred ccEEEEe-cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee---ec
Confidence 345555 68999999965210 011110 01222333332 34
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeee--eeccC----CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee--
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHR--ICGSV----GDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA-- 274 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~--~~~~~----~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~-- 274 (369)
.|...+++ ++|=.|-||.+.... ++... ++.++ ..-|++..|+|.. .++-.+..|+|++-|+|...+
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred CccceEee-ccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 45555554 677889999987543 33222 22221 3568999999998 778888899999999995221
Q ss_pred ----eee----------ccccccCceEEEEEcCCCCCEEEEEECC-CeEEEEECcC-CceeEEEEcCCC-----------
Q 017601 275 ----LSR----------WVHCSKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQWRE-SSKVFAFRGDSN----------- 327 (369)
Q Consensus 275 ----~~~----------~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~~~-~~~~~~~~g~~~----------- 327 (369)
+.. +.+- -..|..+.|++ +|+++++ .| -+|++||++. .+.+.++.-|..
T Consensus 251 ~hsKlfEepedp~~rsffsei-IsSISDvKFs~-sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEI-ISSISDVKFSH-SGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred chhhhhccccCCcchhhHHHH-hhhhhceEEcc-CCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 111 1111 24588999999 9999987 55 4899999954 566666665531
Q ss_pred ---eeeeeEcC--CCCEEEEEeCCCcEEEEECCCCcchhhhc
Q 017601 328 ---WLGFSKCS--NRDVLGGWSDSGSIFVADVVAKENEISAL 364 (369)
Q Consensus 328 ---~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~~~~~l 364 (369)
+..+..+- ++..+++||..+..+++++..|..+-.++
T Consensus 327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl 368 (433)
T KOG1354|consen 327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTL 368 (433)
T ss_pred cchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecc
Confidence 11122222 56699999999999999987775544444
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=1.1e-10 Score=108.52 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=143.6
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEE-EecCCCCCCcccccc-ccC--CCCCCCCCCeeEEEECCCCceeE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVS-KLDTSGKDVDRLTYS-VLP--QDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
..|..-|+++.|+..+ ..+.+.|+. .+++| ++.....++-..... +.+ |-.+.+.++ ..+...+
T Consensus 11 ~r~~e~vc~v~w~~~e----ei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~-------g~~~d~~ 78 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNE----EIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGG-------GKGSDTL 78 (737)
T ss_pred cccceeEEeecccccc----eEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCC-------CCCcceE
Confidence 4677888899998764 455555554 44444 444332111110000 011 000111100 0133467
Q ss_pred EEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee-eeeccCCCc
Q 017601 165 AVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH-RICGSVGDI 243 (369)
Q Consensus 165 a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~-~~~~~~~~~ 243 (369)
+.+ +.||.+.|..-...+...- ..|... +.+...++||.-|+++++||.|+||.- ++ .++ ++... ..+
T Consensus 79 ~i~-s~DGkf~il~k~~rVE~sv-~AH~~A---~~~gRW~~dGtgLlt~GEDG~iKiWSr-sG----MLRStl~Q~-~~~ 147 (737)
T KOG1524|consen 79 LIC-SNDGRFVILNKSARVERSI-SAHAAA---ISSGRWSPDGAGLLTAGEDGVIKIWSR-SG----MLRSTVVQN-EES 147 (737)
T ss_pred EEE-cCCceEEEecccchhhhhh-hhhhhh---hhhcccCCCCceeeeecCCceEEEEec-cc----hHHHHHhhc-Cce
Confidence 777 8899998886543222211 112222 222345678999999999999999974 33 222 12212 488
Q ss_pred EEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC-----
Q 017601 244 LYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES----- 316 (369)
Q Consensus 244 v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~----- 316 (369)
|+|++|.|+. .+.+.+. .+.|=-+.-...+-.|+.| .+-|.++.|+| ..++++|||.|-..++||-...
T Consensus 148 v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAH-DGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S 223 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAH-DGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTS 223 (737)
T ss_pred eEEEEECCCCCceEEecCC--eEEEeecccccceeEEecc-CcEEEEeecCc-cccceeecCCceeEEeecccCcccccC
Confidence 9999999999 5555543 4555455556667789999 99999999999 8899999999999999996531
Q ss_pred --------------ceeEEEEcC----------CCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 317 --------------SKVFAFRGD----------SNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 317 --------------~~~~~~~g~----------~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+..+.+-.| ....++..++||..+++|...|.+.+-.+
T Consensus 224 ~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 111111111 01123333568999999998888876544
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=6.9e-11 Score=117.57 Aligned_cols=187 Identities=10% Similarity=0.070 Sum_probs=130.9
Q ss_pred ceeEEEEecccceEEEEeCCcceEEEEeeeCCcceee--eccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 161 WSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNF--VQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 161 ~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
...++.. ..+..+-+||.....-.. ...+...... ..-..++++.-++.+++.-+.|.+|+... +.+++ .+.+
T Consensus 99 ~k~i~l~-~~~ns~~i~d~~~~~~~~-~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--dn~p~-~l~G 173 (967)
T KOG0974|consen 99 NKKIALV-TSRNSLLIRDSKNSSVLS-KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--DNKPI-RLKG 173 (967)
T ss_pred cceEEEE-EcCceEEEEecccCceeh-hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc--cCCcc-eecc
Confidence 3455555 456778888864221111 1111111111 11111223344666777789999999982 22444 5666
Q ss_pred cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
| .+.|.++.|+-|| ++++.|+|+++++|++.+.+... +.-+| ...|..+.|.| + .++|++.|.+.++|+.+..
T Consensus 174 H-eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~-n--~i~t~gedctcrvW~~~~~ 248 (967)
T KOG0974|consen 174 H-EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLP-N--RIITVGEDCTCRVWGVNGT 248 (967)
T ss_pred c-CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-cceeEEEEecc-c--eeEEeccceEEEEEecccc
Confidence 6 6999999999999 99999999999999999987776 77799 99999999999 4 9999999999999977653
Q ss_pred ceeEEEEcCCCe--eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 317 SKVFAFRGDSNW--LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 317 ~~~~~~~g~~~~--~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+..+.+|..- ..+....+...+++++.|+.+++||+....
T Consensus 249 -~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 249 -QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 33477776521 122223366788999999999999987654
No 211
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.29 E-value=4.1e-10 Score=98.80 Aligned_cols=206 Identities=11% Similarity=0.049 Sum_probs=143.6
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..|++-+|++| ...+|..-.+-.|.|+...... .-.....+..|+ ..+++++|+| ..+.|++| +.|.
T Consensus 11 ~pitchAwn~d----rt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd-----~~vtgvdWap-~snrIvtc-s~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSD----RTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHD-----KIVTGVDWAP-KSNRIVTC-SHDR 77 (361)
T ss_pred CceeeeeecCC----CceEEeccCCceEEEEEecCCC--CceeceehhhhC-----cceeEEeecC-CCCceeEc-cCCC
Confidence 67999999998 3677777777788888776431 011111222233 3466899999 45578888 8999
Q ss_pred eEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 173 SIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 173 ~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
.-.+|... +-..++-.+.......++.+.| .++.|+.+|....|.||=+...++--.-+.+.-+....|++++|
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 99999762 2223333444455666777655 35688888888999999887543221111222111478999999
Q ss_pred CCCC-cEEEEeCCCcEEEEeCC-----C-------------ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 250 SSTG-NIAVAGADRTVTIYDPR-----R-------------WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 250 sp~g-~lasgs~D~~v~vwD~~-----~-------------~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
+|++ +|++|+.|+..+||..- . |+.+.++... .+.|..+.|+| +|..|+=.+.|.++.+
T Consensus 155 hpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~-sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 155 HPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSP-SGNRLAWVGHDSTVSF 232 (361)
T ss_pred cCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCC-CCCEeeEecCCCceEE
Confidence 9999 99999999999998631 1 2233444334 57899999999 9999999999999999
Q ss_pred EECcCC
Q 017601 311 GQWRES 316 (369)
Q Consensus 311 wd~~~~ 316 (369)
-|....
T Consensus 233 ~da~~p 238 (361)
T KOG1523|consen 233 VDAAGP 238 (361)
T ss_pred eecCCC
Confidence 998764
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=2.1e-10 Score=100.63 Aligned_cols=200 Identities=10% Similarity=0.044 Sum_probs=144.0
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+++-||++ +...+|++ -..+.|.||... .+-...+++. |...++.+.+.+ ..++|++++.|..-.+|....+
T Consensus 13 itchAwn~-drt~iAv~-~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap---~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 13 ITCHAWNS-DRTQIAVS-PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP---KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eeeeeecC-CCceEEec-cCCceEEEEEecCCCCceeceehhhhCcceeEEeecC---CCCceeEccCCCCccccccCCC
Confidence 56889999 45678887 677899999753 2234444443 445566666644 4569999999999999998544
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
..-++...+... ....++|.|+|.+ .||+||.-+.|.||-.+.. ...+.-+.+ ++.|++++|+| ++-+|+.|
T Consensus 88 ~~WkptlvLlRi-NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-rStv~sldWhp-nnVLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRI-NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-RSTVTSLDWHP-NNVLLAAG 164 (361)
T ss_pred CeeccceeEEEe-ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc-ccceeeeeccC-Ccceeccc
Confidence 333333333322 4789999999999 9999999999999876642 122223345 78899999999 99999999
Q ss_pred ECCCeEEEEEC-----cC-------------CceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 303 GVDYEVFCGQW-----RE-------------SSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 303 s~D~~i~vwd~-----~~-------------~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|.|+..|++.. ++ ++++..+.....| .++..+++|..|+=.+.|.++.+=|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999853 11 3455555322223 345557799999999999999999887654
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=4e-09 Score=92.63 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=120.0
Q ss_pred ceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEEEEE
Q 017601 172 KSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILYAVC 248 (369)
Q Consensus 172 ~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~ 248 (369)
..|-|||-- ..+..+........+... ..+++.+ -.+.|.+|...+.. +.++.+.... ...+.+++
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--------r~riVvv-l~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--------RDRIVVV-LENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--------CCeEEEE-ecCeEEEEEcCCCh--hheeeeecccCCCceEeec
Confidence 579999843 333333222222333222 2355554 45789999988442 4555544321 13343333
Q ss_pred ECCCC-cEEE-EeCCCcEEEEeCCCcee--eeeccccccCceEEEEEcCCCCCEEEEEECCCe-EEEEECcCCceeEEEE
Q 017601 249 SSSTG-NIAV-AGADRTVTIYDPRRWSA--LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE-VFCGQWRESSKVFAFR 323 (369)
Q Consensus 249 ~sp~g-~las-gs~D~~v~vwD~~~~~~--~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~-i~vwd~~~~~~~~~~~ 323 (369)
-+.+. .||. |-.-|.|+|-|+...+. -..+.+| ...|.+++.+- +|..+||+|..|+ |||||..+++.+..++
T Consensus 144 ~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 144 PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 33333 5655 45678999999987555 4677899 99999999999 9999999999996 8999999999999995
Q ss_pred -c--CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 324 -G--DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 -g--~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
| +.....+..+++..+||..|+.|+|.|+.++...
T Consensus 222 RG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 222 RGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 3 2233456667899999999999999999987644
No 214
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=104.14 Aligned_cols=166 Identities=9% Similarity=-0.016 Sum_probs=122.9
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc---cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEE
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK---ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTI 266 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~v 266 (369)
|..+++.++ |+..+..|+++++|..+++|.+... ...+++....+++...|.|++|+..+ .+.+|+.+++|.+
T Consensus 55 H~GCiNAlq---FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQ---FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hccccceee---eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 445555555 3344678888999999999998521 11156666555546899999999988 9999999999999
Q ss_pred EeCCCceeeeecccc-ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc-ee--EEE-EcCCCeeeeeEcC-CCCEE
Q 017601 267 YDPRRWSALSRWVHC-SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-KV--FAF-RGDSNWLGFSKCS-NRDVL 340 (369)
Q Consensus 267 wD~~~~~~~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-~~--~~~-~g~~~~~~~~~~~-d~~~l 340 (369)
-|+.+.+.+..+... ..+.|+.+..+| ..+.|++.+.|+.|.+||.+... .+ +.. .-..++......| ...+|
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999998887765522 145899999999 68899999999999999998633 11 111 1122233444444 77899
Q ss_pred EEEeCCCcEEEEECCCCcch
Q 017601 341 GGWSDSGSIFVADVVAKENE 360 (369)
Q Consensus 341 ~sgs~dg~I~iWd~~~~~~~ 360 (369)
++.++.+-+.+||.+.....
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred EeccccCCCCceeeccccch
Confidence 99999999999999876543
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.26 E-value=2.7e-12 Score=124.54 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK 283 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~ 283 (369)
-.+.+++++++|..++||.+.+. .++....+| .+.|+.++.+.++ .+|++|.|..|++|-++.+.++..+.+| +
T Consensus 200 rtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGh-s~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh-t 274 (1113)
T KOG0644|consen 200 RTGRYIITGSDDRLVKIWSMETA---RCLASCRGH-SGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH-T 274 (1113)
T ss_pred cccceEeecCccceeeeeeccch---hhhccCCCC-ccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc-c
Confidence 34778999999999999999888 888888887 7899999999999 9999999999999999999999999999 9
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+.|++++|+| .++.+.||++++||++
T Consensus 275 gavtaiafsP-----~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 275 GAVTAIAFSP-----RASSSDDGTCRIWDAR 300 (1113)
T ss_pred cceeeeccCc-----cccCCCCCceEecccc
Confidence 9999999999 3388999999999998
No 216
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.25 E-value=3.5e-10 Score=105.30 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=117.8
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEe
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRT 188 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~ 188 (369)
..++-.+++|++.+.+-.... ...+..|... +.+-.|+|++-. ++++ ++||.|++|.-....++. .
T Consensus 76 d~~~i~s~DGkf~il~k~~rV------E~sv~AH~~A-----~~~gRW~~dGtg-Llt~-GEDG~iKiWSrsGMLRSt-l 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARV------ERSISAHAAA-----ISSGRWSPDGAG-LLTA-GEDGVIKIWSRSGMLRST-V 141 (737)
T ss_pred ceEEEEcCCceEEEecccchh------hhhhhhhhhh-----hhhcccCCCCce-eeee-cCCceEEEEeccchHHHH-H
Confidence 456666778888775433211 1223333332 235678996655 4555 799999999865443332 1
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEE
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIY 267 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vw 267 (369)
.+....+.++.|.| +.+.++.+.. +.+.|=-+... ..+-+...| .+-|.++.|+|.+ .+++|++|-..+||
T Consensus 142 ~Q~~~~v~c~~W~p---~S~~vl~c~g-~h~~IKpL~~n---~k~i~WkAH-DGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 142 VQNEESIRCARWAP---NSNSIVFCQG-GHISIKPLAAN---SKIIRWRAH-DGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred hhcCceeEEEEECC---CCCceEEecC-CeEEEeecccc---cceeEEecc-CcEEEEeecCccccceeecCCceeEEee
Confidence 23344555555544 3446666543 45666666655 333344444 4899999999999 99999999999999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|.. |..+.+-..| ..+|++++|+| + ..++.+| -++.|+=..+.
T Consensus 214 D~~-G~~Lf~S~~~-ey~ITSva~np-d-~~~~v~S-~nt~R~~~p~~ 256 (737)
T KOG1524|consen 214 DAQ-GANLFTSAAE-EYAITSVAFNP-E-KDYLLWS-YNTARFSSPRV 256 (737)
T ss_pred ccc-CcccccCChh-ccceeeeeecc-c-cceeeee-eeeeeecCCCc
Confidence 954 7788888889 99999999999 7 5566655 34666443333
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1e-09 Score=97.76 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=123.9
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
..+++|++ .-..+|++ ..|-.|++||-.. ....++. .....+..+.+-|.+ ..-++++--+-|.||......+
T Consensus 101 lr~~aWhq-H~~~fava-~nddvVriy~ksst~pt~Lks-~sQrnvtclawRPls---aselavgCr~gIciW~~s~tln 174 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVA-TNDDVVRIYDKSSTCPTKLKS-VSQRNVTCLAWRPLS---ASELAVGCRAGICIWSDSRTLN 174 (445)
T ss_pred eeeEeech-hhhhhhhh-ccCcEEEEeccCCCCCceecc-hhhcceeEEEeccCC---cceeeeeecceeEEEEcCcccc
Confidence 45799999 44567777 7899999998643 2222221 122445555555543 3566666666799997653211
Q ss_pred C---------ceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE
Q 017601 230 G---------GCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 230 ~---------~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
. .+.+.+++....+|+++.|++|| .+++++- |..|.|||+.++..+.-..-- .+.++-+.||| |+.+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~slLkwSP-dgd~ 252 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSLLKWSP-DGDV 252 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceeeEEEcC-CCCE
Confidence 1 12233343323789999999999 8888874 778999999997665543222 46789999999 9999
Q ss_pred EEEEECCCeEEEEECcC-CceeEEEEcCCCeeeeeEcCCCCE-EEEEeCCCcEEEEE
Q 017601 299 IYVQGVDYEVFCGQWRE-SSKVFAFRGDSNWLGFSKCSNRDV-LGGWSDSGSIFVAD 353 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~-~~~~~~~~g~~~~~~~~~~~d~~~-l~sgs~dg~I~iWd 353 (369)
|..+.-|+..++|+... -...+-.-+..+..+-...++|++ |++.+.+-.++--.
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 99999999999996543 112222222222233333566665 45555555554433
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=8.6e-09 Score=101.27 Aligned_cols=247 Identities=15% Similarity=0.060 Sum_probs=147.9
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
=|.++|++++|++++ ..|.|+...|-+-+|.+.++. ..+.|.-. ..+..+.++|++... ++. .
T Consensus 249 WH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~-------kqfLPRLg----s~I~~i~vS~ds~~~-sl~-~ 311 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGK-------KQFLPRLG----SPILHIVVSPDSDLY-SLV-L 311 (792)
T ss_pred ecccccceeEEecCC----ceEeecccceEEEEEeecCCC-------cccccccC----CeeEEEEEcCCCCeE-EEE-e
Confidence 377899999999984 689999999999999998763 22333221 236689999966544 444 4
Q ss_pred ccceEEEEeCCc--ceEEEEeeeCC--c----ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-
Q 017601 170 FSKSIDVYDQDI--HLRTLRTLWYP--S----SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV- 240 (369)
Q Consensus 170 ~d~~i~lwd~~~--~~~~~~~~~~~--~----~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~- 240 (369)
.|.+|.+-.... ...++.....+ . .-.+......+|..+.++-.+..+.|++||+-+......++....++
T Consensus 312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~ 391 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYS 391 (792)
T ss_pred cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeeccc
Confidence 799999886521 11111111111 0 00111111123434567778889999999998773322222222111
Q ss_pred ------CCcEEEEEECCCC-cEEEEeC--------CC--cEEEEeCCC----ceeeeec-cccccCceEEEEEcCCCCC-
Q 017601 241 ------GDILYAVCSSSTG-NIAVAGA--------DR--TVTIYDPRR----WSALSRW-VHCSKYEITGLSFSSIDSN- 297 (369)
Q Consensus 241 ------~~~v~~v~~sp~g-~lasgs~--------D~--~v~vwD~~~----~~~~~~~-~~h~~~~v~~l~~sp~d~~- 297 (369)
...+.+++++-.| +++|.-. || .+|+|-... +.+...+ ..| ...+....|.+....
T Consensus 392 ~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH-~~~~vat~~~~~~rs~ 470 (792)
T KOG1963|consen 392 DGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPH-GNAFVATIFLNPTRSV 470 (792)
T ss_pred CCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCC-CceeEEEEEecCcccc
Confidence 1357788888889 8888632 33 467885432 3333333 356 665555555442444
Q ss_pred EEEEEECCCeEEEEECcCCc----------eeEEEEcCCCeeeeeEc---CCCCEEEEEeCCCcEEEEECCCC
Q 017601 298 YIYVQGVDYEVFCGQWRESS----------KVFAFRGDSNWLGFSKC---SNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~~~~----------~~~~~~g~~~~~~~~~~---~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.++++|.|+.+++|-+...+ |...-.=|. ..+..+ .||. +++.+.|++|.+||..+.
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k--~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK--TPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc--CcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 89999999999999884321 111111122 222222 2774 556678899999999874
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.1e-08 Score=98.64 Aligned_cols=211 Identities=12% Similarity=0.031 Sum_probs=125.0
Q ss_pred cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe--cccceEEEEeCCcc-eEEEEeee-CCcc
Q 017601 119 HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR--SFSKSIDVYDQDIH-LRTLRTLW-YPSS 194 (369)
Q Consensus 119 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~--s~d~~i~lwd~~~~-~~~~~~~~-~~~~ 194 (369)
+||++|.+.... ..+... ...+...+|+|++.. ++..+ ..+..|.+||.... .+.+.... +...
T Consensus 180 ~l~~~d~dg~~~------~~lt~~-----~~~~~~p~wSPDG~~-la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYNQ------FVVHRS-----PQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVRQVASFPRHNGA 247 (429)
T ss_pred eEEEEcCCCCCC------EEeecC-----CCceeeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCC
Confidence 788888874421 111111 112447999996654 44431 22457888887532 22222221 1122
Q ss_pred eeeeccCCCCCCCCcEEEEE-cCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-CcEEEE--
Q 017601 195 LNFVQNLSPVNGGPNMLAVT-EGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD-RTVTIY-- 267 (369)
Q Consensus 195 v~~~~~~~~~~~~~~lla~s-~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D-~~v~vw-- 267 (369)
. .++||+..|+.+. .++ .|.+||+.++ ... .+... ...+...+|+||| .|+..+.+ +...||
T Consensus 248 ~------~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~-~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 248 P------AFSPDGSKLAFALSKTGSLNLYVMDLASG---QIR-QVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred e------EECCCCCEEEEEEcCCCCcEEEEEECCCC---CEE-EccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 2 2346777777653 344 5889999876 433 33322 2567789999999 77666653 444555
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
|+.+++. ..+..+ ........|+| ||++|+..+.+ ..|.+||+.+++.......... .....++||.+|+..+
T Consensus 317 d~~~g~~-~~lt~~-~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~-~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 317 NINGGAP-QRITWE-GSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLD-ETPSIAPNGTMVIYSS 392 (429)
T ss_pred ECCCCCe-EEeecC-CCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCC-CCceECCCCCEEEEEE
Confidence 6665543 333333 34566789999 99998876654 3688999988764332222210 2334567999999988
Q ss_pred CCCc---EEEEECCC
Q 017601 345 DSGS---IFVADVVA 356 (369)
Q Consensus 345 ~dg~---I~iWd~~~ 356 (369)
.++. +++|++..
T Consensus 393 ~~~~~~~l~~~~~~G 407 (429)
T PRK03629 393 SQGMGSVLNLVSTDG 407 (429)
T ss_pred cCCCceEEEEEECCC
Confidence 8865 67777743
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=6.6e-11 Score=110.32 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=99.0
Q ss_pred eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCC-CCCEEEEEECCCeEEE
Q 017601 234 HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSI-DSNYIYVQGVDYEVFC 310 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~-d~~~l~s~s~D~~i~v 310 (369)
+.+.+| .+-|+|++|+.+| +|++||.|-.+.|||.-..++++.+. || ...|.++.|-|. +.++++||+.|..|++
T Consensus 44 ~eL~GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccc-cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 456777 7999999999999 99999999999999998888887664 88 999999999985 3457889999999999
Q ss_pred EECcC----------CceeEEEEcCCC-eeeeeEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 017601 311 GQWRE----------SSKVFAFRGDSN-WLGFSKCSNR-DVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 311 wd~~~----------~~~~~~~~g~~~-~~~~~~~~d~-~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|+.. .+..+.+..|.+ ...+..++++ ..+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 99985 234455555551 1233335555 789999999999999998754
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2e-09 Score=101.14 Aligned_cols=199 Identities=17% Similarity=0.166 Sum_probs=134.0
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEE-----------Ee----------eeCCcceeeecc----------
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTL-----------RT----------LWYPSSLNFVQN---------- 200 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~-----------~~----------~~~~~~v~~~~~---------- 200 (369)
+.+..+|++..++|+| -+--.|++||+....-.+ .. ++....|.|.+-
T Consensus 55 t~ik~s~DGqY~lAtG-~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP 133 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATG-TYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP 133 (703)
T ss_pred ceeEecCCCcEEEEec-ccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC
Confidence 3688999888888887 888999999974321111 00 001111111110
Q ss_pred -----CCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee
Q 017601 201 -----LSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA 274 (369)
Q Consensus 201 -----~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~ 274 (369)
..+..-..-|+.++....|.=+++..| .-+..+... .+.+++|..++.. +|++|+.||.|..||.|..+.
T Consensus 134 ~~GRDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~P~~~~-~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 134 KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLNPFETD-SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred cCCccccccCCCccEEEeecCcceEEEEcccc---ccccccccc-cccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 001111224555555567777888887 777777655 5889999999988 999999999999999998766
Q ss_pred eeecc------ccccC-----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEc---C--CCC
Q 017601 275 LSRWV------HCSKY-----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKC---S--NRD 338 (369)
Q Consensus 275 ~~~~~------~h~~~-----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~---~--d~~ 338 (369)
+.++. .| .+ .|+++.|+. +|-.++.|..+|.|.|+|++..+++..- .|..-..+... . ++.
T Consensus 210 v~~l~~~~~v~s~-pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 210 VGTLDAASSVNSH-PGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred heeeecccccCCC-ccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCc
Confidence 65544 22 23 499999998 8999999999999999999997765543 23311333332 1 345
Q ss_pred EEEEEeCCCcEEEEECCCCcc
Q 017601 339 VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 339 ~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.|+|. ....++|||-.+|+.
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred eEEec-chHHhhhcccccCCc
Confidence 55544 567899999988873
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2e-09 Score=96.83 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=131.0
Q ss_pred eeEEEEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcC--CeEEEEeCCcccCCceeee
Q 017601 162 SMAAVARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEG--CQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d--~~v~iwD~~~~~~~~~~~~ 235 (369)
..+.+| -.+|.+.+|... .+...+........+..+.-.+. ...+++ ++.. ..++|||+.+. +.+..
T Consensus 116 g~Litc-~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~---~qiw~ 188 (412)
T KOG3881|consen 116 GTLITC-VSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQS---KQIWS 188 (412)
T ss_pred CEEEEE-ecCCcEEEEeccCCccccccceeeecCCceeeeccCCC---CCceEecCchhcccceeeeecccc---eeeee
Confidence 355666 578999999653 11122222222222333332222 234554 7777 78999999865 33322
Q ss_pred eec-cC-------CCcEEEEEECCC--C-cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 236 ICG-SV-------GDILYAVCSSST--G-NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 236 ~~~-~~-------~~~v~~v~~sp~--g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
-+. .+ .-.++++.|-+. . .||++..-+.|++||++. .+++.++.-- +.+++++..-| +++.++++-
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p-~gn~Iy~gn 266 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTP-SGNFIYTGN 266 (412)
T ss_pred ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecC-CCcEEEEec
Confidence 111 00 135677889877 5 999999999999999998 4667777766 78999999999 999999999
Q ss_pred CCCeEEEEECcCCceeEE-EEcCCC-eeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESSKVFA-FRGDSN-WLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~-~~g~~~-~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.-+.+..||++.++.+.. |.|-.. ..++...+...+|++++-|+.|+|+|+++.+.
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999999999999887766 554331 12333345778999999999999999999653
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=6.7e-10 Score=102.38 Aligned_cols=271 Identities=12% Similarity=0.102 Sum_probs=174.1
Q ss_pred ccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCee
Q 017601 73 LIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWS 152 (369)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (369)
.+.+++....+..-...+|...|.-..|.|.. +...+++.+.+|.+++-.+..... ... ...+.+|.. .+.
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--~d~ti~~~s~dgqvr~s~i~~t~~-~e~-t~rl~~h~g-----~vh 236 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--GDRTIVTSSRDGQVRVSEILETGY-VEN-TKRLAPHEG-----PVH 236 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhccCCC--CCcCceeccccCceeeeeeccccc-eec-ceecccccC-----ccc
Confidence 34556655543333346899888888898874 346788888999999876653311 001 122333333 333
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcc--eEEEEeee-CCc---ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIH--LRTLRTLW-YPS---SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~--~~~~~~~~-~~~---~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~ 226 (369)
-++.-|..+..|.++ +.|+.+.-+|+... ...+.... +.. .+..+...|.++ ..+++++.|..+++||.|.
T Consensus 237 klav~p~sp~~f~S~-geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt--~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 237 KLAVEPDSPKPFLSC-GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT--NEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred eeeecCCCCCccccc-ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc--cccccCChhhhhhhhcccc
Confidence 688889888889998 89999998887421 11221211 111 223333333222 4677788899999999985
Q ss_pred ccC---CceeeeeeccC-----CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--c----------eeeee-ccccccC
Q 017601 227 KEN---GGCLHRICGSV-----GDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--W----------SALSR-WVHCSKY 284 (369)
Q Consensus 227 ~~~---~~~~~~~~~~~-----~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~----------~~~~~-~~~h~~~ 284 (369)
-.. ...+..+..++ ...|++++|+.++ -|.+.-.|--|+++...- + ..+.. ++|| ..
T Consensus 314 ~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGH-rN 392 (559)
T KOG1334|consen 314 IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGH-RN 392 (559)
T ss_pred hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccc-cc
Confidence 321 12233332211 3579999999888 555556677899995322 3 22333 7888 53
Q ss_pred --ceEEEEE-cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee-eeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 285 --EITGLSF-SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL-GFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 285 --~v~~l~~-sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.|-.+.| -| ...+++|||.=|.|.||+-.+++.++.+.|..... ++..-|--.+|||.+-|..|+||-..+.
T Consensus 393 ~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 393 SRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 4777776 56 78999999999999999999999999888876211 1111234568999999999999976443
No 224
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=8e-09 Score=89.87 Aligned_cols=250 Identities=12% Similarity=0.039 Sum_probs=151.6
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCC-CCCCCCeeEEEECCCCceeEEEEecc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDC-GVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
+..+..+.|...+.++...++-++..|+|.++..+.... +..+.+-+. .....--.++.|++.+. .++++ -.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s-----s~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs-~s 141 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES-----SVHLRGLSSKKISVVEALSLDISTSGT-KIFVS-DS 141 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeecccee-----eeeecccchhhhhheeeeEEEeeccCc-eEEEE-cC
Confidence 456677777765444456888899999999988764311 111222111 00001123688888554 45665 56
Q ss_pred cceEE-EEeCCcceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccCCCcEEEE
Q 017601 171 SKSID-VYDQDIHLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSVGDILYAV 247 (369)
Q Consensus 171 d~~i~-lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~~~~v~~v 247 (369)
++.+. ++.....+.+.+..+ |...+-...+... +.+.+.++++|+.+..||+|.+. +.+.+ .+-| ...|.++
T Consensus 142 ~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--~pnlvytGgDD~~l~~~D~R~p~--~~i~~n~kvH-~~GV~SI 216 (339)
T KOG0280|consen 142 RGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--EPNLVYTGGDDGSLSCWDIRIPK--TFIWHNSKVH-TSGVVSI 216 (339)
T ss_pred CCcEEEEecceeeeeecccccccceeeeeeecccC--CCceEEecCCCceEEEEEecCCc--ceeeecceee-ecceEEE
Confidence 77777 443334444333222 1111111111111 22577789999999999999552 34433 2222 4778888
Q ss_pred EECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC--c---ee
Q 017601 248 CSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES--S---KV 319 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~--~---~~ 319 (369)
.-+|.- .|++|+.|-.|++||.|+ ++++..-. ..+.|..+..+|.....|+.+.+-+-.+|-+...+ + ..
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVL 294 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheee
Confidence 777654 999999999999999997 77776544 25789999999965556666777777888888763 3 33
Q ss_pred EEEEcCCCeeeeeEcC----CCCEEEEEe-CCCcEE-EEECCCCc
Q 017601 320 FAFRGDSNWLGFSKCS----NRDVLGGWS-DSGSIF-VADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~~~~~~~~----d~~~l~sgs-~dg~I~-iWd~~~~~ 358 (369)
..++.|. ++..-. ...+||++| .|+.++ +|-..+++
T Consensus 295 ~s~~~hd---Sl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 295 PSDKIHD---SLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred ecccccc---ceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 4445554 222211 124578765 577755 88666654
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.6e-08 Score=99.42 Aligned_cols=249 Identities=15% Similarity=0.087 Sum_probs=153.3
Q ss_pred ccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC---Ccee
Q 017601 87 NRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS---QWSM 163 (369)
Q Consensus 87 ~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~---~~~~ 163 (369)
.+.+|...+.++.+.|.. .....+.+.+.+|.|.+||...+. .+. .+....+ +-.+.+.|. .+..
T Consensus 52 ~l~~~~a~l~s~~~~~~~-~~~~~~~~~sl~G~I~vwd~~~~~-Llk--t~~~~~~--------v~~~~~~~~~a~~s~~ 119 (792)
T KOG1963|consen 52 SLEDHTAPLTSVIVLPSS-ENANYLIVCSLDGTIRVWDWSDGE-LLK--TFDNNLP--------VHALVYKPAQADISAN 119 (792)
T ss_pred hcccccCccceeeecCCC-ccceEEEEEecCccEEEecCCCcE-EEE--EEecCCc--------eeEEEechhHhCccce
Confidence 478999999999998863 222556688899999999987541 110 1111000 001111110 0001
Q ss_pred EEEEecccceEEE---EeCCcceEEEEe-------------eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 164 AAVARSFSKSIDV---YDQDIHLRTLRT-------------LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 164 ~a~~~s~d~~i~l---wd~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
+..+ ..|..+-. .+.....+.+-. ...+..+.+.. ++.+.....+..+.+|+....
T Consensus 120 ~~~s-~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-------~ge~~~i~~~~~~~~~~v~~~ 191 (792)
T KOG1963|consen 120 VYVS-VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-------SGEFKGIVHMCKIHIYFVPKH 191 (792)
T ss_pred eEee-cccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-------CceEEEEEEeeeEEEEEeccc
Confidence 1111 12211111 111111111111 11133343333 456777777888999998875
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe-CC-C--ceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD-PR-R--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD-~~-~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+....+....++...+++.++||++ ++|+|..||.|.+|. .. . ....+.+.-| ..+|++++|++ +|.+|+||
T Consensus 192 ~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~-~G~~LlSG 269 (792)
T KOG1963|consen 192 TKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSS-DGAYLLSG 269 (792)
T ss_pred ceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEec-CCceEeec
Confidence 21111122221114568999999999 999999999999995 32 1 1223456667 79999999999 99999999
Q ss_pred ECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 303 GVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
|..+.+-+|.+.+++..+.-+-......+..++|+++.+...+|+.|.+-.+.+-
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999999999774443333333356666889999999999999999877554
No 226
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=5.2e-08 Score=94.39 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=115.9
Q ss_pred eeEEEECCCCceeEEEEec--ccceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCC--eEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARS--FSKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGC--QLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s--~d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~--~v~iwD~ 224 (369)
+...+|+|++. .|+..+. .+..|.+||+... .+.+.. .+..+.. ..++||+..|+. .+.++ .|.+||+
T Consensus 204 v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~~--~~g~~~~---~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 204 VLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVGN--FPGMTFA---PRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred eEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEeec--CCCcccC---cEECCCCCEEEEEEecCCCceEEEEEC
Confidence 45799999655 5555422 2468999998532 222221 1211111 223467777764 44455 4777788
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
.++ . +..+..+ .......+|+||| .|+..+. ++ .|.+||+..++. ..+..+ ...+....||| ||+.|+
T Consensus 278 ~~~---~-~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~-~~~~~~~~~Sp-dG~~ia 349 (435)
T PRK05137 278 RSG---T-TTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG-GGRYSTPVWSP-RGDLIA 349 (435)
T ss_pred CCC---c-eEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC-CCcccCeEECC-CCCEEE
Confidence 776 3 3444433 3456778999999 7776653 33 578888766543 334434 45567789999 999998
Q ss_pred EEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC------CcEEEEECCCCcc
Q 017601 301 VQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS------GSIFVADVVAKEN 359 (369)
Q Consensus 301 s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d------g~I~iWd~~~~~~ 359 (369)
..+.+ ..|.+||+..+.. ..+...........++||+.|+..+.+ ..+++.|+..++.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 87654 3688889865443 333211111334457799887655543 2578888866543
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=2e-09 Score=107.44 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=131.1
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEe
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRT 188 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~ 188 (369)
..++.+.++-.+++||...+.. -..++......-- ....+-+++ ++-.++++ +.-+.|-+|+........+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~-----~~~i~~~er~~l~-~~~~~g~s~-~~~~i~~g-sv~~~iivW~~~~dn~p~~l 171 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSV-----LSKIQSDERCTLY-SSLIIGDSA-EELYIASG-SVFGEIIVWKPHEDNKPIRL 171 (967)
T ss_pred ceEEEEEcCceEEEEecccCce-----ehhcCCCceEEEE-eEEEEeccC-cEEEEEec-cccccEEEEeccccCCccee
Confidence 5667677777888888775421 0011110000000 011244555 56677777 78899999986522222233
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEe
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYD 268 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD 268 (369)
..|...+-.+. ++.|+.+++++|+|.++++|++.+.+-.. ..-|.| ...|..++|.|+ .+++++.|-+.++|+
T Consensus 172 ~GHeG~iF~i~---~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgH--saRvw~~~~~~n-~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 172 KGHEGSIFSIV---TSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGH--SARVWACCFLPN-RIITVGEDCTCRVWG 244 (967)
T ss_pred cccCCceEEEE---EccCCcEEEEEecCcceeeeecccccccC-cccccc--cceeEEEEeccc-eeEEeccceEEEEEe
Confidence 44444443333 23468899999999999999999884222 122444 489999999998 999999999999997
Q ss_pred CCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 269 PRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 269 ~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
. ++..+..+.+|....|..++..+ +...+++++.|+.+++||+..
T Consensus 245 ~-~~~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 245 V-NGTQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-ccceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 4 45666689999777899999999 888999999999999999865
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.10 E-value=1.5e-10 Score=106.03 Aligned_cols=189 Identities=7% Similarity=-0.073 Sum_probs=149.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
.+.++.+ +..++.+ +.-|.+..+|.. .....+........+.|++ ...++|++....+.|||-. |
T Consensus 134 ~~~ytrn-Grhlllg-GrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-------neq~~AVAQK~y~yvYD~~-G--- 200 (545)
T KOG1272|consen 134 HLDYTRN-GRHLLLG-GRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-------NEQFFAVAQKKYVYVYDNN-G--- 200 (545)
T ss_pred eeeecCC-ccEEEec-CCccceeeeecccceeeeeeehhhhhhhhhhhc-------chHHHHhhhhceEEEecCC-C---
Confidence 4788774 4556666 678899998863 3333444444556677776 3588888888999999954 4
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
..++.+..+ ..|..+.|-|.- +|++++..|.++--|+.+|+.+..+..- .+.+..+.-+| -...+-.|...|+|.
T Consensus 201 tElHClk~~--~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP-~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 201 TELHCLKRH--IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNP-YNAVIHLGHSNGTVS 276 (545)
T ss_pred cEEeehhhc--CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCC-ccceEEEcCCCceEE
Confidence 677777777 889999999999 9999999999999999999999998877 78899999999 667888899999999
Q ss_pred EEECcCCceeEEEEcCCCe-eeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 310 CGQWRESSKVFAFRGDSNW-LGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~-~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+|.....+.+..+-.|..- .++..-++|.++++.+.|+.|+|||+++-.
T Consensus 277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 9999887776666555511 234445599999999999999999998765
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.8e-08 Score=96.14 Aligned_cols=192 Identities=14% Similarity=-0.001 Sum_probs=114.2
Q ss_pred eeEEEECCCCceeEEEEecc--cceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEE-EEcCC--eEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLA-VTEGC--QLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla-~s~d~--~v~iwD~ 224 (369)
+.+.+|+|++. .++..+.. ...|.+||.... .+.+... +.... ...++||+..++. .+.++ .|.+||+
T Consensus 206 v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~---~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 206 ILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASF--RGING---APSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCcc---CceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 44689999655 55555222 346889997532 2222211 11111 1224467776654 34444 6999999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
.++ .. ..+..+ .......+|+||| .|+..+. ++. |.++|+.+++.. .+..+ .......+||| ||++|+
T Consensus 280 ~~g---~~-~~lt~~-~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~-g~~~~~~~~Sp-DG~~Ia 351 (433)
T PRK04922 280 GSR---QL-TRLTNH-FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ-GNYNARASVSP-DGKKIA 351 (433)
T ss_pred CCC---Ce-EECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECC-CCCEEE
Confidence 876 33 334333 2445678999999 7776653 444 666677665532 22222 33455789999 999988
Q ss_pred EEECCC---eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCC
Q 017601 301 VQGVDY---EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAK 357 (369)
Q Consensus 301 s~s~D~---~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~ 357 (369)
..+.++ .|.+||+.+++......+... .....++||++|+..+.+ +.|+++++..+
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~-~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRTLTPGSLD-ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEECCCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 765443 699999988765433222211 233447799987766653 46888888544
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.5e-09 Score=93.79 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=121.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
-.++-++|++- ...+|.+..+..|++++-... ... .++ ......+++++|.|.....++++ . ..
T Consensus 99 ~dlr~~aWhqH----~~~fava~nddvVriy~ksst---~pt---~Lk----s~sQrnvtclawRPlsaselavg-C-r~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQH----IIAFAVATNDDVVRIYDKSST---CPT---KLK----SVSQRNVTCLAWRPLSASELAVG-C-RA 162 (445)
T ss_pred cceeeEeechh----hhhhhhhccCcEEEEeccCCC---CCc---eec----chhhcceeEEEeccCCcceeeee-e-cc
Confidence 44678888773 456677777778888775421 111 011 11223467999999888888887 3 45
Q ss_pred eEEEEeCCcc---eEE--------EEeeeCC--cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeee-e
Q 017601 173 SIDVYDQDIH---LRT--------LRTLWYP--SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRI-C 237 (369)
Q Consensus 173 ~i~lwd~~~~---~~~--------~~~~~~~--~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~-~ 237 (369)
-|+||..+.. .+. .+.++++ ..+.++++ ++|+..+++++ .|..|+|||..++ ..+.-. .
T Consensus 163 gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg---~~~pL~~~ 236 (445)
T KOG2139|consen 163 GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTG---QKIPLIPK 236 (445)
T ss_pred eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEE---cCCCCEEeecccCcceEEEEcCCCC---Cccccccc
Confidence 6999965421 111 1112222 45566665 35677788777 4789999999988 333222 2
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe-CCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYD-PRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD-~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+. +.+.-+.||||| +|.++.-|+..++|+ -+++.......+. +.|....|+| +|++|+-.
T Consensus 237 gl--gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs--grvqtacWsp-cGsfLLf~ 298 (445)
T KOG2139|consen 237 GL--GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS--GRVQTACWSP-CGSFLLFA 298 (445)
T ss_pred CC--CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC--CceeeeeecC-CCCEEEEE
Confidence 33 778889999999 999999999999995 4446655555554 5899999999 98876544
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.8e-08 Score=94.33 Aligned_cols=206 Identities=12% Similarity=0.033 Sum_probs=118.1
Q ss_pred CccceeeEEEEeecCCCCceEEEEE-e--cCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSV-D--SYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAV 166 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~-d--~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~ 166 (369)
.+...+.+.+||||+ ..++-. . ....+++|++.++.. ..+.... +.....+|+|++..++.+
T Consensus 196 ~~~~~~~~p~wSPDG----~~la~~s~~~g~~~i~i~dl~~G~~------~~l~~~~-----~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 196 RSPQPLMSPAWSPDG----SKLAYVTFESGRSALVIQTLANGAV------RQVASFP-----RHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred cCCCceeeeEEcCCC----CEEEEEEecCCCcEEEEEECCCCCe------EEccCCC-----CCcCCeEECCCCCEEEEE
Confidence 455678899999985 344432 2 234788998865421 1111110 112258999966554444
Q ss_pred Eecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcC-CeEEEE--eCCcccCCceeeeeeccC
Q 017601 167 ARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEG-CQLTIW--DLRMKENGGCLHRICGSV 240 (369)
Q Consensus 167 ~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d-~~v~iw--D~~~~~~~~~~~~~~~~~ 240 (369)
. +.++ .|.+||... ..+.+. ......... .++||+..|+.++++ +...|| |+.++ . ...+...
T Consensus 261 ~-~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~---~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~-~~~lt~~- 329 (429)
T PRK03629 261 L-SKTGSLNLYVMDLASGQIRQVT--DGRSNNTEP---TWFPDSQNLAYTSDQAGRPQVYKVNINGG---A-PQRITWE- 329 (429)
T ss_pred E-cCCCCcEEEEEECCCCCEEEcc--CCCCCcCce---EECCCCCEEEEEeCCCCCceEEEEECCCC---C-eEEeecC-
Confidence 3 4444 588888753 222221 112122222 234677778777764 444555 66554 2 3333332
Q ss_pred CCcEEEEEECCCC-cEEEEeCC---CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe---EEEEEC
Q 017601 241 GDILYAVCSSSTG-NIAVAGAD---RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE---VFCGQW 313 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D---~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~---i~vwd~ 313 (369)
.....+.+|+||| .|+..+.+ ..|.+||+.+++.. .+... .......|+| ||+.|+.++.|+. +.++++
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 2456678999999 77665443 35888999877543 33322 2234678999 9999999998874 667776
Q ss_pred cCCceeEEEEcCC
Q 017601 314 RESSKVFAFRGDS 326 (369)
Q Consensus 314 ~~~~~~~~~~g~~ 326 (369)
. ++....+.+|.
T Consensus 406 ~-G~~~~~l~~~~ 417 (429)
T PRK03629 406 D-GRFKARLPATD 417 (429)
T ss_pred C-CCCeEECccCC
Confidence 4 44445555543
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.08 E-value=7.6e-09 Score=89.99 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=103.5
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccC--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee--eeeccccccCceE
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSV--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA--LSRWVHCSKYEIT 287 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~--~~~~~~h~~~~v~ 287 (369)
+-.+|.|.+|.....+....+..+.... ...-.++.|++.+ .++++-.+|.+.+-+...... +++++.| +.++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~W 169 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAW 169 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeee
Confidence 4457889998765432111122222110 1123567899999 999999999999666555444 4589999 99999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECc-CCceeEE-EEcCCCeeeeeE---cC-CCCEEEEEeCCCcEEEEECCCCcchh
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWR-ESSKVFA-FRGDSNWLGFSK---CS-NRDVLGGWSDSGSIFVADVVAKENEI 361 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~-~~~~~~~-~~g~~~~~~~~~---~~-d~~~l~sgs~dg~I~iWd~~~~~~~~ 361 (369)
...|+..+++++.+||.|+.+..||++ +++.+.. -+-|. .++.. ++ .+.+|++|+.|-.|++||.++-..++
T Consensus 170 ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~--~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 170 TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT--SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee--cceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 999999899999999999999999999 4444443 23454 44443 33 78899999999999999998644333
No 233
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=4.6e-08 Score=92.45 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=131.8
Q ss_pred ceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCC---Cee-EEEECC-------------CCceeEEEEecc
Q 017601 108 YMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEG---SWS-GLCFSP-------------SQWSMAAVARSF 170 (369)
Q Consensus 108 ~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~l~~~p-------------~~~~~~a~~~s~ 170 (369)
...+|..+.+|.+++|+...+.. ...+.|.....+.+ -|. .+..+| .+..+++-+ -.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~-----~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg-t~ 78 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQL-----QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG-TP 78 (541)
T ss_pred hheEeecCCCCeEEEEEccCcee-----eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee-cC
Confidence 46788889999999999876521 11111111100000 010 011122 133456666 78
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|.|.+|+.. .....+.+..|...++.+.+. .+-+.|-+++.|..+-.|+.+.. ..+..+... ...+.+++
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~---~~~~ciyS~~ad~~v~~~~~~~~---~~~~~~~~~-~~~~~sl~ 151 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA---QRLGCIYSVGADLKVVYILEKEK---VIIRIWKEQ-KPLVSSLC 151 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecc---cccCceEecCCceeEEEEecccc---eeeeeeccC-CCccceEE
Confidence 8999999874 334444445566666666532 23457888999999999999987 666666655 57889999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC-----CCEEEE-EECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID-----SNYIYV-QGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d-----~~~l~s-~s~D~~i~vwd~~~ 315 (369)
.+||| .+++|+ +.|++||+.+++.+.+|.|| .++|.++.|-- + |.++++ ...+..+.+|-+..
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GSPVRTLSFTT-LIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCceEEEEecCC-CcceEEEEEEE-eccccccceeeeccccccceeEEEEEc
Confidence 99999 888886 68999999999999999999 99999999987 5 566655 45567788887654
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.8e-08 Score=97.32 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEE-ec--CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSV-DS--YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~-d~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+...+.+.+|+||+ ..++.. +. ...|++||+.++.. ..+... .+.....+|+|++..++.
T Consensus 192 ~~~~~~v~~p~wSPDG----~~la~~s~~~~~~~I~~~dl~~g~~------~~l~~~-----~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 192 LSSPEPIISPAWSPDG----TKLAYVSFESKKPVVYVHDLATGRR------RVVANF-----KGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred ccCCCCcccceEcCCC----CEEEEEEccCCCcEEEEEECCCCCE------EEeecC-----CCCccceEECCCCCEEEE
Confidence 4567788999999985 344433 22 24699999875521 111111 111236899996655444
Q ss_pred EEecccceEEEEeCC---cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCC
Q 017601 166 VARSFSKSIDVYDQD---IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVG 241 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~ 241 (369)
+. +.++..+||..+ ...+.+.. +....... .++||+..++.+++ ++...||.+.... .....+... +
T Consensus 257 ~~-~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~---~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~-g 327 (427)
T PRK02889 257 AL-SRDGNSQIYTVNADGSGLRRLTQ--SSGIDTEP---FFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFT-G 327 (427)
T ss_pred EE-ccCCCceEEEEECCCCCcEECCC--CCCCCcCe---EEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecC-C
Confidence 44 778887777542 22222211 11111111 23467777877765 4666777654221 122233222 2
Q ss_pred CcEEEEEECCCC-cEEEEeCCC---cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC---eEEEEEC
Q 017601 242 DILYAVCSSSTG-NIAVAGADR---TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY---EVFCGQW 313 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~---~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~---~i~vwd~ 313 (369)
......+|||+| +|+..+.++ .|.+||+.+++.. .+... .......|+| |++.|+..+.++ .+.+-++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAP-NGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC--CCccCceECC-CCCEEEEEEecCCCEEEEEEEC
Confidence 334467899999 777666544 6999999887644 33322 2346789999 999988877654 2444455
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=4.1e-07 Score=96.52 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=124.2
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEe------------------eeCCcceeeeccCCCCC-CCCcEE
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRT------------------LWYPSSLNFVQNLSPVN-GGPNML 211 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~------------------~~~~~~v~~~~~~~~~~-~~~~ll 211 (369)
.++++++++. .+.++-.....|+.+|.. ..+.++.. ...|..+.+. + ++..++
T Consensus 627 ~GIavd~~gn-~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d------p~~g~LyV 699 (1057)
T PLN02919 627 QGLAYNAKKN-LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE------PVNEKVYI 699 (1057)
T ss_pred cEEEEeCCCC-EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe------cCCCeEEE
Confidence 3799998544 444443667889999864 33433321 1123333332 3 234556
Q ss_pred EEEcCCeEEEEeCCcccCCceeeeeecc--------------CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee
Q 017601 212 AVTEGCQLTIWDLRMKENGGCLHRICGS--------------VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 212 a~s~d~~v~iwD~~~~~~~~~~~~~~~~--------------~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~ 275 (369)
+.+.+++|++||..++ . +..+.+. .....+.++|+|++ ++++-+.++.|++||+.++...
T Consensus 700 ad~~~~~I~v~d~~~g---~-v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 700 AMAGQHQIWEYNISDG---V-TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred EECCCCeEEEEECCCC---e-EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 6677899999998765 2 2222211 01235679999998 4556667899999999875432
Q ss_pred ee-------------cccc-------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-cCC--------
Q 017601 276 SR-------------WVHC-------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-GDS-------- 326 (369)
Q Consensus 276 ~~-------------~~~h-------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-g~~-------- 326 (369)
.. +-.+ .-..-.+++|++ +|.++++-+.+++|++||..++....... |..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 10 0000 011246899999 99999998999999999998765543321 100
Q ss_pred -----CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 327 -----NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 327 -----~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.-.++...++|+++++-+.++.|++||+.+++.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 013444456899999999999999999988764
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=9.6e-08 Score=92.55 Aligned_cols=175 Identities=15% Similarity=0.036 Sum_probs=112.1
Q ss_pred cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 171 SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 171 d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
...|.++|.+. ..+.+. .+...+.... ++||+..|+.++. +..|.+||+.++ ... .+... .+.+.+
T Consensus 181 ~~~l~~~d~dg~~~~~lt--~~~~~v~~p~---wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~-~l~~~-~g~~~~ 250 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLT--DGSSLVLTPR---FSPNRQEITYMSYANGRPRVYLLDLETG---QRE-LVGNF-PGMTFA 250 (435)
T ss_pred ceEEEEECCCCCCcEEEe--cCCCCeEeeE---ECCCCCEEEEEEecCCCCEEEEEECCCC---cEE-EeecC-CCcccC
Confidence 34788888653 223332 1222333333 3467778887764 468999999877 332 33322 356778
Q ss_pred EEECCCC-cE-EEEeCCCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-C--CeEEEEECcCCcee
Q 017601 247 VCSSSTG-NI-AVAGADRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-D--YEVFCGQWRESSKV 319 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D--~~i~vwd~~~~~~~ 319 (369)
.+|+||| .| ++.+.++. |.+||+.+++. ..+..+ ........|+| ||+.|+..+. + ..|++||+..++..
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~ 327 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPR 327 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCC-CCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence 8999999 55 45666665 67779887654 456656 66677899999 9999887764 3 36888898776554
Q ss_pred EEEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCc
Q 017601 320 FAFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 320 ~~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~ 358 (369)
....+.........++||+.|+..+.+ ..|.+||+.++.
T Consensus 328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 443322212334457899998876654 368888986553
No 237
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.02 E-value=1.3e-09 Score=93.21 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=116.3
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEeee----CCcceeeeccCCCCCCCCcEEE-----EEcCCeEEEEeCCcccCCce
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTLW----YPSSLNFVQNLSPVNGGPNMLA-----VTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~lla-----~s~d~~v~iwD~~~~~~~~~ 232 (369)
..++++ ..|+.+.+++.++..+..+... ......++. .++.+.+ .-.-+..++|+++.. +.
T Consensus 102 t~V~~~-~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~------~~~~i~s~~~g~~n~~d~~~a~~~~p~---~t 171 (319)
T KOG4714|consen 102 NRVCIG-YADGSLAVFSTDKDLALMSRIPSIHSGSASRKICR------HGNSILSGGCGNWNAQDNFYANTLDPI---KT 171 (319)
T ss_pred CceEec-CCCceEEEEechHHHhhhhhcccccccccccceee------cccEEecCCcceEeeccceeeeccccc---cc
Confidence 456666 8999999998875332222111 011111222 1223333 223456788888754 22
Q ss_pred eeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+..-... ...|.++|-+|.. .+++|+.||.+.+||.|+. .+...++.| +.++..+.|+|.++..|.+++.||.+.
T Consensus 172 ~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 172 LIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEE
Confidence 1111111 2559999999987 8889999999999999995 445678899 999999999999999999999999999
Q ss_pred EEECcCCceeEEE--EcCCCeee--------------------eeEcC-CCCEEEEEeCCCcEEEEE
Q 017601 310 CGQWRESSKVFAF--RGDSNWLG--------------------FSKCS-NRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 310 vwd~~~~~~~~~~--~g~~~~~~--------------------~~~~~-d~~~l~sgs~dg~I~iWd 353 (369)
-||..+.-+.-.. .+++.|.. +.... -|..|++|+.-+.|++.+
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 9998752111000 12222211 11100 578899999999999875
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=5.3e-08 Score=94.27 Aligned_cols=174 Identities=17% Similarity=0.101 Sum_probs=110.1
Q ss_pred ceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 172 KSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 172 ~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.+|.+||.+. ..+.+.. +...+... .++||+..|+.++. +..|.+||+.++ ... .+... .+...+.
T Consensus 184 ~~l~i~D~~g~~~~~lt~--~~~~v~~p---~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~-~l~~~-~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGYNPQTILR--SAEPILSP---AWSPDGKKLAYVSFERGRSAIYVQDLATG---QRE-LVASF-RGINGAP 253 (433)
T ss_pred EEEEEECCCCCCceEeec--CCCccccc---cCCCCCCEEEEEecCCCCcEEEEEECCCC---CEE-EeccC-CCCccCc
Confidence 4688898753 2333322 22222222 24567778887764 347999999876 332 22222 2445578
Q ss_pred EECCCC-cEE-EEeCCC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCe--EEEEECcCCceeE
Q 017601 248 CSSSTG-NIA-VAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYE--VFCGQWRESSKVF 320 (369)
Q Consensus 248 ~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~--i~vwd~~~~~~~~ 320 (369)
+|+||| .|+ +.+.++ .|.+||+.+++. ..+..+ .......+|+| |++.|+..+. ++. |.++|+.+++...
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 999999 554 555555 599999988764 455556 55667899999 9999887764 444 6667776665433
Q ss_pred E-EEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCCCcc
Q 017601 321 A-FRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVAKEN 359 (369)
Q Consensus 321 ~-~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~~~~ 359 (369)
. +.++.. .....++||+.|+..+.++ .|++||+.+++.
T Consensus 331 lt~~g~~~-~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 331 LTFQGNYN-ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred eecCCCCc-cCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2 333221 2345577999988665443 699999987754
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.01 E-value=2.6e-08 Score=94.07 Aligned_cols=140 Identities=14% Similarity=0.085 Sum_probs=111.4
Q ss_pred EEEEEcCCeEEEEeCCcccCCceeeeee-ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 210 MLAVTEGCQLTIWDLRMKENGGCLHRIC-GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 210 lla~s~d~~v~iwD~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
++-+...|.|.+|++..+ +.-.++. +.+-+.|+++.++.+- .|.+++.|..+..|+......+..+... +..+.
T Consensus 73 lvlgt~~g~v~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~ 148 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVS 148 (541)
T ss_pred EEeecCCccEEEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccc
Confidence 333667899999999887 5555555 2225889999988887 9999999999999999999999999988 89999
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee-eeE--cC---CCCE-EEEEeCCCcEEEEECCC
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG-FSK--CS---NRDV-LGGWSDSGSIFVADVVA 356 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~-~~~--~~---d~~~-l~sgs~dg~I~iWd~~~ 356 (369)
++..+| |+..|+++| ++|++||+++.+.+..|.||..... +.. .. .|.+ |.+...+.-|.+|-+..
T Consensus 149 sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 149 SLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999 999999987 8899999999999999999983211 111 11 2444 55666678888997654
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.01 E-value=5.8e-08 Score=85.83 Aligned_cols=238 Identities=16% Similarity=0.148 Sum_probs=143.5
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
-+.|.-|.|+-|+ ..+|.....++.|.+|++... .+...- ..+..|...++|||++..++.++ .++
T Consensus 48 ldki~yieW~ads---~~ilC~~yk~~~vqvwsl~Qp-------ew~ckI---deg~agls~~~WSPdgrhiL~ts-eF~ 113 (447)
T KOG4497|consen 48 LDKIVYIEWKADS---CHILCVAYKDPKVQVWSLVQP-------EWYCKI---DEGQAGLSSISWSPDGRHILLTS-EFD 113 (447)
T ss_pred HHHhhheeeeccc---eeeeeeeeccceEEEEEeecc-------eeEEEe---ccCCCcceeeeECCCcceEeeee-cce
Confidence 3667888898763 678888899999999999854 122211 11223566899999776666666 999
Q ss_pred ceEEEEeCCcceEEE-Eeee-CCcceeeeccCCCCCCCCcEEEE------------------------------------
Q 017601 172 KSIDVYDQDIHLRTL-RTLW-YPSSLNFVQNLSPVNGGPNMLAV------------------------------------ 213 (369)
Q Consensus 172 ~~i~lwd~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~~lla~------------------------------------ 213 (369)
-.|.+|.+....-.+ ...+ +...++|. +|+ ++.+.
T Consensus 114 lriTVWSL~t~~~~~~~~pK~~~kg~~f~------~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 114 LRITVWSLNTQKGYLLPHPKTNVKGYAFH------PDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred eEEEEEEeccceeEEecccccCceeEEEC------CCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 999999874322111 1000 11112221 222 22221
Q ss_pred E-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeee--------------
Q 017601 214 T-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSR-------------- 277 (369)
Q Consensus 214 s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~-------------- 277 (369)
+ +++.+.+||---. ..+..+.- +-.+..++|+|.+ .|+.|+.|+.++|.+--+++++.+
T Consensus 187 sPdg~~laVwd~~Le---ykv~aYe~--~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~ 261 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLE---YKVYAYER--GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL 261 (447)
T ss_pred CCCCcEEEEecchhh---heeeeeee--ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence 1 3445677774322 22222222 3568899999988 999999999999876433222111
Q ss_pred ----------------------------------------------cc------ccccCceEEEEEcCCCCCEEEEEE--
Q 017601 278 ----------------------------------------------WV------HCSKYEITGLSFSSIDSNYIYVQG-- 303 (369)
Q Consensus 278 ----------------------------------------------~~------~h~~~~v~~l~~sp~d~~~l~s~s-- 303 (369)
++ +. +-.+--++||+ |..++++-.
T Consensus 262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g~lafs~-Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP-KCGAGKLAFSC-DSTYAATRNDK 339 (447)
T ss_pred hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc-ccccceeeecC-CceEEeeecCC
Confidence 11 11 12345689999 999988853
Q ss_pred CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 304 VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.-+.+.+||++.-++...+...+....+..-|....|+.+.....+++|...-.
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 346899999998666555532221234444554455555555667999987543
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.00 E-value=3.4e-08 Score=100.27 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=129.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceE---EEE---eee-C---CcceeeeccCCCCCCCCcEEEEEcCCeEE
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLR---TLR---TLW-Y---PSSLNFVQNLSPVNGGPNMLAVTEGCQLT 220 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~---~~~---~~~-~---~~~v~~~~~~~~~~~~~~lla~s~d~~v~ 220 (369)
+..++.++....+++++ |.||+|++||..+... +++ +.. . ...++.+. .+..++.++.||.|+
T Consensus 1051 v~k~a~s~~~~s~Fvsg-S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~------~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSG-SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG------NGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ccceeecCCCCceEEEe-cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc------CCCeEEEEcCCCeEE
Confidence 34678887666789998 9999999999743221 111 111 1 23344443 256888889999999
Q ss_pred EEeCCcc--cCC--ceeeeeeccCCCcE-EEEEECCCC---cEEEEeCCCcEEEEeCCCceeeeeccccc-cCceEEEEE
Q 017601 221 IWDLRMK--ENG--GCLHRICGSVGDIL-YAVCSSSTG---NIAVAGADRTVTIYDPRRWSALSRWVHCS-KYEITGLSF 291 (369)
Q Consensus 221 iwD~~~~--~~~--~~~~~~~~~~~~~v-~~v~~sp~g---~lasgs~D~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~ 291 (369)
+.++... +.. .+......+..+.+ ..-+|.... .|+.+..-+.|..||+|....+.+++... .+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 9998752 111 11111111112333 334554433 67777888899999999866655554211 378999999
Q ss_pred cCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CC-CeeeeeEcC---CCCE-EEEEe-CCCcEEEEECCCCc
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DS-NWLGFSKCS---NRDV-LGGWS-DSGSIFVADVVAKE 358 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~-~~~~~~~~~---d~~~-l~sgs-~dg~I~iWd~~~~~ 358 (369)
+| .++.++.|..-|.+-+||++=+.++..+.- +. ....+..|+ .... +++++ ..+.|.+|++.+|.
T Consensus 1204 dp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1204 DP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred cC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99 999999999999999999998777766632 22 112233344 2244 44444 57899999999884
No 242
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=9.2e-09 Score=93.00 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=103.8
Q ss_pred EEECCCCceeEEEEecccceEEEEeCC--cc-eE---EEEeeeCCcceeeeccCCCCCCCCcEEE--EEcCCeEEEEeCC
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQD--IH-LR---TLRTLWYPSSLNFVQNLSPVNGGPNMLA--VTEGCQLTIWDLR 225 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~~lla--~s~d~~v~iwD~~ 225 (369)
+.++| +..++|++ -.++...+++.. .. .+ .......+..+.++.. +...+++ .++...+.+|...
T Consensus 68 ~~~s~-~~~llAv~-~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-----~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVA-TSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-----DTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccCC-CceEEEEE-eCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-----cceEEEEeecCCceeeeeeccc
Confidence 34445 45567776 455555555432 11 11 1222234556666652 1223333 3455667777665
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc-ccccCceEEEEEcCCCCCEEEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV-HCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.+ .+...+ +| -..++.|+|+||+ +|.++..|..|+|-....--.+..|. || +.-|..++.-+ +..|+|+|
T Consensus 141 ~~---~~~~~l-Gh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~--~~~LlS~s 212 (390)
T KOG3914|consen 141 SG---RCEPIL-GH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTD--NYLLLSGS 212 (390)
T ss_pred cc---Ccchhh-hh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-Hhheeeeeecc--CceeeecC
Confidence 43 444333 44 4889999999999 99999999999997776666666665 79 99999999987 45689999
Q ss_pred CCCeEEEEECcCCceeEEE
Q 017601 304 VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~ 322 (369)
.|+++++||+++++++.++
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999998877666
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.3e-07 Score=91.31 Aligned_cols=176 Identities=18% Similarity=0.116 Sum_probs=107.6
Q ss_pred cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 171 SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 171 d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
...|.++|.+. ..+.+.. +...+.... ++||+..|+.++. ...|.+||+.++ ... .+... .+.+.+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~--~~~~v~~p~---wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~-~l~~~-~g~~~~ 244 (427)
T PRK02889 175 RYQLQISDADGQNAQSALS--SPEPIISPA---WSPDGTKLAYVSFESKKPVVYVHDLATG---RRR-VVANF-KGSNSA 244 (427)
T ss_pred ccEEEEECCCCCCceEecc--CCCCcccce---EcCCCCEEEEEEccCCCcEEEEEECCCC---CEE-EeecC-CCCccc
Confidence 34677777643 2233221 222222222 3467777777664 246999999887 332 23222 245678
Q ss_pred EEECCCC-cEE-EEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEEC--cCCceeE
Q 017601 247 VCSSSTG-NIA-VAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQW--RESSKVF 320 (369)
Q Consensus 247 v~~sp~g-~la-sgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~--~~~~~~~ 320 (369)
.+|+||| .|+ +.+.++...||.+.. +.....+..+ ........|+| ||+.|+..+. ++...+|.+ ..++...
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC-CCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 8999999 665 567788777765432 2335566666 55667889999 9998887664 456666655 4443322
Q ss_pred -EEEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCCCcc
Q 017601 321 -AFRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVAKEN 359 (369)
Q Consensus 321 -~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~~~~ 359 (369)
.+.+... .....++||++|+..+.++ .|++||+.+++.
T Consensus 323 lt~~g~~~-~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 323 VTFTGSYN-TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EecCCCCc-CceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 2333221 2334577999998777654 699999987753
No 244
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=6.2e-09 Score=100.46 Aligned_cols=237 Identities=16% Similarity=0.201 Sum_probs=146.3
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
-.+.|+|... ...-+++.+.. .-++|++...... ...+-+.+|.. +++++.|+|+.+.++|++ +.|..+.
T Consensus 71 ad~qws~h~a-~~~wiVsts~q-kaiiwnlA~ss~~--aIef~lhghsr-----aitd~n~~~q~pdVlatc-svdt~vh 140 (1081)
T KOG0309|consen 71 ADVQWSPHPA-KPYWIVSTSNQ-KAIIWNLAKSSSN--AIEFVLHGHSR-----AITDINFNPQHPDVLATC-SVDTYVH 140 (1081)
T ss_pred cceecccCCC-CceeEEecCcc-hhhhhhhhcCCcc--ceEEEEecCcc-----ceeccccCCCCCcceeec-cccccce
Confidence 3445555421 12333333332 3456777654321 11122333332 355899999999999999 9999999
Q ss_pred EEeCCcceEEEEee--e--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 176 VYDQDIHLRTLRTL--W--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 176 lwd~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
.||....-+.+-.. + ....+.+.. .+..+++.+..+-|++||+|.+. .++..++++ ...|+.++|+.
T Consensus 141 ~wd~rSp~~p~ys~~~w~s~asqVkwny------k~p~vlasshg~~i~vwd~r~gs--~pl~s~K~~-vs~vn~~~fnr 211 (1081)
T KOG0309|consen 141 AWDMRSPHRPFYSTSSWRSAASQVKWNY------KDPNVLASSHGNDIFVWDLRKGS--TPLCSLKGH-VSSVNSIDFNR 211 (1081)
T ss_pred eeeccCCCcceeeeecccccCceeeecc------cCcchhhhccCCceEEEeccCCC--cceEEeccc-ceeeehHHHhh
Confidence 99986444333221 1 123333332 23577888888899999999874 667777776 68899999987
Q ss_pred CC--cEEEEeCCCcEEEEeCCCceee--eeccccccCceEEEEEcCCCCC--EEEEEECCCeEEE---------EECcC-
Q 017601 252 TG--NIAVAGADRTVTIYDPRRWSAL--SRWVHCSKYEITGLSFSSIDSN--YIYVQGVDYEVFC---------GQWRE- 315 (369)
Q Consensus 252 ~g--~lasgs~D~~v~vwD~~~~~~~--~~~~~h~~~~v~~l~~sp~d~~--~l~s~s~D~~i~v---------wd~~~- 315 (369)
.- .+.+.+.|++|+.||..+.... ++.. . ..+|..-.|-| -|. ++.-.-.+..+.+ |+..+
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t-~~piw~~r~~P-fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~ 288 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-T-NFPIWRGRYLP-FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL 288 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceecc-c-cCcceeccccc-cCceeEeccccCCeeeeeccccchhhhhccccC
Confidence 65 8999999999999998764332 2222 2 46676666666 332 2211111223333 33332
Q ss_pred CceeEEEEcCCCeeeeeE--------cC----C-CCEEEEEeCCCcEEEEECCC
Q 017601 316 SSKVFAFRGDSNWLGFSK--------CS----N-RDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~--------~~----d-~~~l~sgs~dg~I~iWd~~~ 356 (369)
...++.|.||. .-+.. |. + .-.|++.|.|.++++|-+..
T Consensus 289 ~~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 289 NTPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 46889999998 22111 11 1 12599999999999998754
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.7e-07 Score=86.93 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=146.7
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC-CceeEEE----Eecc
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS-QWSMAAV----ARSF 170 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~a~----~~s~ 170 (369)
+++.|++|+ .+++-=....+++++.... ..+ .++. +..+++.++++|. .+..+|+ .++.
T Consensus 129 W~~qfs~dE-----sl~arlv~nev~f~~~~~f-~~~-~~kl---------~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 129 WVPQFSIDE-----SLAARLVSNEVQFYDLGSF-KTI-QHKL---------SVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred cccccccch-----hhhhhhhcceEEEEecCCc-cce-eeee---------eccceeeEEecCCCCCceEEEEccCCCCC
Confidence 688898885 4444444567888888753 111 1111 1234667889985 3344554 1245
Q ss_pred cceEEEEeCCc--ceEE--EEeeeCCcceeeeccCCCCCCCCc--EEEEEc-C---------CeEEEEeCCcccCCceee
Q 017601 171 SKSIDVYDQDI--HLRT--LRTLWYPSSLNFVQNLSPVNGGPN--MLAVTE-G---------CQLTIWDLRMKENGGCLH 234 (369)
Q Consensus 171 d~~i~lwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~--lla~s~-d---------~~v~iwD~~~~~~~~~~~ 234 (369)
-..|+||.... .... .+++...+.+.+.- . +-+.. +|+.++ | .++.+.++... .+.-
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~W-N---~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~---s~~V 265 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKW-N---KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE---SVSV 265 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEe-c---cCCceEEEEEEEeecCCCccccccceEEEEEecCc---eEEE
Confidence 56899997651 1111 11111122222221 1 11222 223332 2 37888888733 4554
Q ss_pred eeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEV 308 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i 308 (369)
.+... ++|+++.|+|+| .+++ |=.=-.+.|||++ +.++..+. +++=+.+-|+| .|++++-+|-+ |.+
T Consensus 266 ~L~k~--GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp-~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 266 PLLKE--GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNP-HGNIILLAGFGNLPGDM 338 (566)
T ss_pred ecCCC--CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECC-CCCEEEEeecCCCCCce
Confidence 45544 999999999999 4443 5556689999987 66777665 45668899999 99999998865 689
Q ss_pred EEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC------CCcEEEEECCC
Q 017601 309 FCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD------SGSIFVADVVA 356 (369)
Q Consensus 309 ~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~------dg~I~iWd~~~ 356 (369)
-|||+.+.+++..+..... .-+..+|||++|++++. |+.++||+...
T Consensus 339 EvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999888888865431 33455899999988874 58899999843
No 246
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=1.9e-08 Score=91.07 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=100.6
Q ss_pred CCCcEEEEEc-CCeEEEEeCCcccC-CceeeeeeccCCCcEEEEEECCCC----cEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 206 GGPNMLAVTE-GCQLTIWDLRMKEN-GGCLHRICGSVGDILYAVCSSSTG----NIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 206 ~~~~lla~s~-d~~v~iwD~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
+++.+++++. +....++|.+...+ .+.+...... ..-+++.|-.+. ..-.+++...+.+|.... .+.....
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~~~~~l 148 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GRCEPIL 148 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc-cCcchhh
Confidence 4567777665 45555777765432 2344444433 333444444444 223345566667776665 3444556
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
|| -.-++.|+|+| |+++++++-.|..||+-.....-.+..| -||.-+..-..+-++..|+|||.|++|++||.++|+
T Consensus 149 Gh-vSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 149 GH-VSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hh-hhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 89 89999999999 9999999999999999877654444444 578733333334478889999999999999999998
Q ss_pred c
Q 017601 359 N 359 (369)
Q Consensus 359 ~ 359 (369)
.
T Consensus 227 ~ 227 (390)
T KOG3914|consen 227 L 227 (390)
T ss_pred c
Confidence 5
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.92 E-value=2.8e-07 Score=86.87 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=131.9
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEE
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSID 175 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~ 175 (369)
-.+.|+||+ ..+...+.+|.|.++|+.+.. . ...+.. +. .-.++++++++...++++ ...+++.
T Consensus 40 ~~~~~s~Dg----r~~yv~~rdg~vsviD~~~~~-~----v~~i~~-----G~-~~~~i~~s~DG~~~~v~n-~~~~~v~ 103 (369)
T PF02239_consen 40 AGLKFSPDG----RYLYVANRDGTVSVIDLATGK-V----VATIKV-----GG-NPRGIAVSPDGKYVYVAN-YEPGTVS 103 (369)
T ss_dssp EEEE-TT-S----SEEEEEETTSEEEEEETTSSS-E----EEEEE------SS-EEEEEEE--TTTEEEEEE-EETTEEE
T ss_pred eEEEecCCC----CEEEEEcCCCeEEEEECCccc-E----EEEEec-----CC-CcceEEEcCCCCEEEEEe-cCCCcee
Confidence 346788884 455556788999999998652 1 111111 11 123799999665444444 7899999
Q ss_pred EEeCC--cceEEEEeeeCC-----cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 176 VYDQD--IHLRTLRTLWYP-----SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 176 lwd~~--~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
++|.. +.++.+.....+ ..+.-+-.. +....++..- +-+.|-+-|...... .....+.. +......
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s---~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~--g~~~~D~ 177 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS---PGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKV--GRFPHDG 177 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE----TTEEEE
T ss_pred EeccccccceeecccccccccccCCCceeEEec---CCCCEEEEEEccCCeEEEEEeccccc-cceeeecc--ccccccc
Confidence 99975 345554433211 122222111 2233455444 457888888776521 12233433 3677889
Q ss_pred EECCCC-cE-EEEeCCCcEEEEeCCCceeeeecc------------------------ccc-------------------
Q 017601 248 CSSSTG-NI-AVAGADRTVTIYDPRRWSALSRWV------------------------HCS------------------- 282 (369)
Q Consensus 248 ~~sp~g-~l-asgs~D~~v~vwD~~~~~~~~~~~------------------------~h~------------------- 282 (369)
.|+|++ ++ ++...++.|-++|.++++.+..+. .|.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 999999 54 445667788888887654432210 010
Q ss_pred -----------cCceEEEEEcCCCCCEEEEE----ECCCeEEEEECcCCceeEEEEc--CCCeeeeeEcCCCCEEEEEe-
Q 017601 283 -----------KYEITGLSFSSIDSNYIYVQ----GVDYEVFCGQWRESSKVFAFRG--DSNWLGFSKCSNRDVLGGWS- 344 (369)
Q Consensus 283 -----------~~~v~~l~~sp~d~~~l~s~----s~D~~i~vwd~~~~~~~~~~~g--~~~~~~~~~~~d~~~l~sgs- 344 (369)
... ..+.-+| +++++... ....+|.++|.++.+....+.. ..+...++..+||+.+....
T Consensus 258 ~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 258 AWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred cCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe
Confidence 111 3567789 89998887 3447999999999877777642 21235667778888644333
Q ss_pred -CCCcEEEEECCCCcc
Q 017601 345 -DSGSIFVADVVAKEN 359 (369)
Q Consensus 345 -~dg~I~iWd~~~~~~ 359 (369)
.++.|.|||.+|.+.
T Consensus 336 ~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 336 DGNGAIVVYDAKTLKE 351 (369)
T ss_dssp --TTEEEEEETTTTEE
T ss_pred cCCCEEEEEECCCcEE
Confidence 344799999999864
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=5e-07 Score=87.13 Aligned_cols=198 Identities=9% Similarity=-0.055 Sum_probs=112.0
Q ss_pred EEEECCCCcee-E-EEEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-----CCeEEEE
Q 017601 153 GLCFSPSQWSM-A-AVARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-----GCQLTIW 222 (369)
Q Consensus 153 ~l~~~p~~~~~-~-a~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-----d~~v~iw 222 (369)
.=+|+|++..+ + .++ ..++ .|.+.+... ..+.+...... .+. ..++|||..|+.+++ +-.+.+|
T Consensus 189 sP~wSPDG~~~~~~y~S-~~~g~~~I~~~~l~~g~~~~lt~~~g~---~~~--p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVS-YKLGVPKIFLGSLENPAGKKILALQGN---QLM--PTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred cceEccCCCceEEEEEE-ccCCCceEEEEECCCCCceEeecCCCC---ccc--eEECCCCCEEEEEECCCCCcceeEEEe
Confidence 35899976542 2 233 3444 455556542 22222221111 111 124577878877653 2245557
Q ss_pred eCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe-CCCcEEEEe--CCC-ceeeeeccccccCceEEEEEcCCCCC
Q 017601 223 DLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG-ADRTVTIYD--PRR-WSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 223 D~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs-~D~~v~vwD--~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
|+..+..+...+..... .......+|+||| .|+..+ .++...+|. +.. +.....+..+ ...+....||| ||+
T Consensus 263 ~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSP-DG~ 339 (428)
T PRK01029 263 SLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSP-DGK 339 (428)
T ss_pred ecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECC-CCC
Confidence 77653211222222222 1334678999999 666655 466656664 432 2334445555 55678899999 999
Q ss_pred EEEEEECC---CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEE-EeC--CCcEEEEECCCCcc
Q 017601 298 YIYVQGVD---YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGG-WSD--SGSIFVADVVAKEN 359 (369)
Q Consensus 298 ~l~s~s~D---~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~s-gs~--dg~I~iWd~~~~~~ 359 (369)
.|+..+.+ ..|.+||+.+++......+.........++||+.|+- ... ...|++||+.+++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 98877654 4799999988776544433221123444678887764 333 35788999987653
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=8.8e-07 Score=85.28 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=112.5
Q ss_pred eEEEECCCCceeEEEEeccc--ceEEEEeCCcc-eEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcC--CeEEEEeCC
Q 017601 152 SGLCFSPSQWSMAAVARSFS--KSIDVYDQDIH-LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEG--CQLTIWDLR 225 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d--~~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d--~~v~iwD~~ 225 (369)
...+|+|++. .++.+...+ ..|.+||.... ...+... ....... .++||+..|+.. +.+ ..|.+||+.
T Consensus 193 ~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~--~~~~~~~---~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 193 LSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASF--PGMNGAP---AFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred ecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecC--CCCccce---EECCCCCEEEEEECCCCCccEEEEECC
Confidence 3578999655 455542332 47999997532 2222221 1111111 134567667654 333 368889988
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
++ .. ..+..+ .......+|+|+| +|+..+. ++ .|.++|+.+++. ..+..+ ...+....|+| ++++++.
T Consensus 267 ~~---~~-~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~-~~~~~~~~~sp-dg~~i~~ 338 (417)
T TIGR02800 267 GK---QL-TRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFR-GGYNASPSWSP-DGDLIAF 338 (417)
T ss_pred CC---CE-EECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecC-CCCccCeEECC-CCCEEEE
Confidence 76 32 333332 2344567899999 7766554 33 577788876553 344444 55678889999 9999999
Q ss_pred EECCC---eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC---cEEEEECCC
Q 017601 302 QGVDY---EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG---SIFVADVVA 356 (369)
Q Consensus 302 ~s~D~---~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I~iWd~~~ 356 (369)
++.++ .|.+||+.++.......... ......++|+..|+..+.++ .+++.+...
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGERVLTDTGL-DESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEccCCceEEEEEeCCCCCeEEccCCCC-CCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 88876 89999998754433222111 12223466888887777654 455555443
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.91 E-value=2.3e-08 Score=88.38 Aligned_cols=217 Identities=14% Similarity=0.160 Sum_probs=135.9
Q ss_pred EEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc-cccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 98 IALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL-TYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 98 l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
..|||++ ..+|+.... ++.+-|..+- ..+ .|... + . +.-+-|..+. ..+..+...++.|.+
T Consensus 14 c~fSp~g----~yiAs~~~y-rlviRd~~tl----q~~qlf~cl--d-k-----i~yieW~ads-~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 14 CSFSPCG----NYIASLSRY-RLVIRDSETL----QLHQLFLCL--D-K-----IVYIEWKADS-CHILCVAYKDPKVQV 75 (447)
T ss_pred eeECCCC----Ceeeeeeee-EEEEeccchh----hHHHHHHHH--H-H-----hhheeeeccc-eeeeeeeeccceEEE
Confidence 4688984 789998887 6666554422 111 11110 0 0 1126676644 444444388889999
Q ss_pred EeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-c
Q 017601 177 YDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-N 254 (369)
Q Consensus 177 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~ 254 (369)
|++.++...-+...++..+....++ |||..++..++ |-.|.+|.+.+. +... +.+. ...+..++|+||| +
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WS---PdgrhiL~tseF~lriTVWSL~t~---~~~~-~~~p-K~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWS---PDGRHILLTSEFDLRITVWSLNTQ---KGYL-LPHP-KTNVKGYAFHPDGQF 147 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeEC---CCcceEeeeecceeEEEEEEeccc---eeEE-eccc-ccCceeEEECCCCce
Confidence 9998776666555566667676654 56767776554 889999999886 4433 3443 4567889999999 5
Q ss_pred EEEEeCCC---cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE--CCCeEEEEECcCCceeEEEEcCCCee
Q 017601 255 IAVAGADR---TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--VDYEVFCGQWRESSKVFAFRGDSNWL 329 (369)
Q Consensus 255 lasgs~D~---~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--~D~~i~vwd~~~~~~~~~~~g~~~~~ 329 (369)
.+..+.-. .+.|..-..+..+..+.-. +-..+.+.|+| ||+.|+.-- .+..|..+... ....
T Consensus 148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d-T~DltgieWsP-dg~~laVwd~~Leykv~aYe~~-----------lG~k 214 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISSCKAWILLKEFKLD-TIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYERG-----------LGLK 214 (447)
T ss_pred eeeeecccHHHHHHHHhhHHHHHHHhcCCC-cccccCceECC-CCcEEEEecchhhheeeeeeec-----------ccee
Confidence 55554321 2233333346666677766 67789999999 998876521 22333322221 1113
Q ss_pred eeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 330 GFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 330 ~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.+..+|.+++|+.|+.|+.++|-+
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred EEEeccccceEEeeccchhhhhhc
Confidence 445577889999999999998854
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.88 E-value=1.6e-06 Score=81.82 Aligned_cols=186 Identities=14% Similarity=0.039 Sum_probs=118.1
Q ss_pred eEEEEecccceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 163 MAAVARSFSKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
++++.-..+++|.+.|... .+..+.....+..... +++|+.++..++.|+.|.++|+.+. +.++++...
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~-----~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~~G- 77 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK-----FSPDGRYLYVANRDGTVSVIDLATG---KVVATIKVG- 77 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE------TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE-S-
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE-----ecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEecC-
Confidence 4444437789999999863 4455544322211111 3367777777888999999999998 788888765
Q ss_pred CCcEEEEEECCCC-cEEEE-eCCCcEEEEeCCCceeeeecccc------ccCceEEEEEcCCCCCEEEEEECC-CeEEEE
Q 017601 241 GDILYAVCSSSTG-NIAVA-GADRTVTIYDPRRWSALSRWVHC------SKYEITGLSFSSIDSNYIYVQGVD-YEVFCG 311 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasg-s~D~~v~vwD~~~~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vw 311 (369)
.....+++|+|| +++++ -.++.+.++|.++.+++.++... ....+.++..+| ....++..-.| +.|.+-
T Consensus 78 -~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 78 -GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp -SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEE
T ss_pred -CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEE
Confidence 778899999999 66655 46899999999999998876532 134678898899 66656555555 788888
Q ss_pred ECcCCcee--EEEEcCCCeeeeeEcCCCCEEEE-EeCCCcEEEEECCCCcc
Q 017601 312 QWRESSKV--FAFRGDSNWLGFSKCSNRDVLGG-WSDSGSIFVADVVAKEN 359 (369)
Q Consensus 312 d~~~~~~~--~~~~g~~~~~~~~~~~d~~~l~s-gs~dg~I~iWd~~~~~~ 359 (369)
|......+ ..+............+++++++. ...++.|-++|.++++.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 87664322 33332222233444668887554 56678999999988754
No 252
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.3e-08 Score=95.45 Aligned_cols=244 Identities=13% Similarity=0.132 Sum_probs=150.8
Q ss_pred cCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCc--cccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 88 RCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVD--RLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 88 ~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..+|+..|..|+--.++ .-..+++++.+|.+|.+.....++. ...+..+.|..++. .+-|-. +-..++
T Consensus 731 f~GH~~~iRai~AidNE----NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~-----~igfL~-~lr~i~ 800 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNE----NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH-----DIGFLA-DLRSIA 800 (1034)
T ss_pred ccCcHHHhHHHHhcccc----cceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc-----ceeeee-ccceee
Confidence 45899999988754443 3445566777899999987655443 24566666766655 345544 223445
Q ss_pred EEecccceEEEEeCC--cceEEEEeee---CCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEeCCcccCCceeeeee--
Q 017601 166 VARSFSKSIDVYDQD--IHLRTLRTLW---YPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWDLRMKENGGCLHRIC-- 237 (369)
Q Consensus 166 ~~~s~d~~i~lwd~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD~~~~~~~~~~~~~~-- 237 (369)
+ .|+-|.+||.- .....+.... ....+..+.. -+...++++ +...+|+++|.|..+-....+.-.
T Consensus 801 S---cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n----v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 801 S---CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN----VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred e---ccCcceeecccccchhHhhhcCcccCCCceeEeccc----CcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 4 48999999963 2222221111 1223333331 123455554 678999999999873212222221
Q ss_pred ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE-EECcC
Q 017601 238 GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC-GQWRE 315 (369)
Q Consensus 238 ~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v-wd~~~ 315 (369)
++ ...+.+++..|.| ++|.|-..|.|.+.|.|+|+.+..|..- .-....++ .| ..+.|++...|.++-+ |-.-.
T Consensus 874 ~P-na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm-ecdllqla-ap-sdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 874 GP-NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM-ECDLLQLA-AP-SDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CC-chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc-cchhhhhc-Cc-hhHHHHhhcccceeEeeehhcC
Confidence 22 4668999999999 9999999999999999999999998866 44455554 34 5577888888999988 86555
Q ss_pred CceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 316 SSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 316 ~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
+......+....-..+. -.-|.-|++......+.+|.
T Consensus 950 gimh~q~kpppepahfl-qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 950 GIMHLQDKPPPEPAHFL-QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred CeeeeccCCCCcchhhh-hccCceeEEeccCcEEEEEe
Confidence 44333332211000000 01355667776667777773
No 253
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=5.8e-09 Score=92.59 Aligned_cols=138 Identities=9% Similarity=0.050 Sum_probs=109.0
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc-----eeeeeccccccC
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW-----SALSRWVHCSKY 284 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~-----~~~~~~~~h~~~ 284 (369)
++++.+.+|-|-|+.++ .-+.|... ..|.++.|...+ ++..|...|.|-.+|+|.. .+.+.+. | ..
T Consensus 228 fs~G~sqqv~L~nvetg----~~qsf~sk--sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h-~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG----HQQSFQSK--SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H-DS 299 (425)
T ss_pred ecccccceeEEEEeecc----cccccccc--hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c-Cc
Confidence 66778889999999987 23345444 889999998877 9999999999999999974 3333333 5 78
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce---eEEEEcCCCeeeeeEcC-----CCCEEEEEeCCCcEEEEECCC
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK---VFAFRGDSNWLGFSKCS-----NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~---~~~~~g~~~~~~~~~~~-----d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.|+++..=..++++|++.+++|+|++||.+.-++ +..+.||.+ .....+ ....|+++++|...+||.++.
T Consensus 300 svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred chhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--cccccccccccccceEEEccCeeEEEEEeccc
Confidence 8888876554668999999999999999998666 999999983 333322 566888999999999999987
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
+.
T Consensus 378 gh 379 (425)
T KOG2695|consen 378 GH 379 (425)
T ss_pred Cc
Confidence 75
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=2.3e-07 Score=82.62 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=129.1
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccc---------------ccccCCCCC--------
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLT---------------YSVLPQDCG-------- 145 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~-------- 145 (369)
+.-...|+.|+|-+++... ..|.+ ..+.++.+|.+.......++.. ..+.+++..
T Consensus 81 leieEKinkIrw~~~~n~a-~FLls-tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLA-EFLLS-TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhhceecCCCCcc-EEEEe-cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 4456778999998875433 23333 3456899999875432221100 001111110
Q ss_pred ---CCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee-CCc-------ceeeeccCCCCCCCCcEEEEE
Q 017601 146 ---VGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW-YPS-------SLNFVQNLSPVNGGPNMLAVT 214 (369)
Q Consensus 146 ---~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~-------~v~~~~~~~~~~~~~~lla~s 214 (369)
.+..-+.+++++.+. ..+.++ .|-.|.||.+...-+.+.... .|. -++...++|. ..+.|+..+
T Consensus 159 ~aNaHtyhiNSIS~NsD~-Et~lSA--DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSS 233 (433)
T KOG1354|consen 159 YANAHTYHINSISVNSDK-ETFLSA--DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSS 233 (433)
T ss_pred ccccceeEeeeeeecCcc-ceEeec--cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEec
Confidence 001124578888844 455554 788999998764433332221 111 1111222221 345777788
Q ss_pred cCCeEEEEeCCcccCC-ceeeeeecc----C-------CCcEEEEEECCCC-cEEEEeCCCcEEEEeC-CCceeeeeccc
Q 017601 215 EGCQLTIWDLRMKENG-GCLHRICGS----V-------GDILYAVCSSSTG-NIAVAGADRTVTIYDP-RRWSALSRWVH 280 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~-~~~~~~~~~----~-------~~~v~~v~~sp~g-~lasgs~D~~v~vwD~-~~~~~~~~~~~ 280 (369)
.-|+|+|-|+|....- ..-+.+... . -..|..+.|+++| ++++- .=-+|++||+ ...+++.+++-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCCcceEEee
Confidence 9999999999943100 000111110 0 2468889999999 66553 3479999999 45777777766
Q ss_pred ccc------------Cc---eEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 281 CSK------------YE---ITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 281 h~~------------~~---v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
| . +. -..++||. ++.++++||..+.+++++...+
T Consensus 313 h-~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 313 H-EYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred h-HhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCC
Confidence 5 3 12 34689999 8899999999999999997654
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-07 Score=83.24 Aligned_cols=246 Identities=13% Similarity=0.151 Sum_probs=145.9
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccc----ccCCCCCC-------CCCCeeEEEE-CC
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYS----VLPQDCGV-------GEGSWSGLCF-SP 158 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~l~~-~p 158 (369)
-...|.++.|... +..+|++|+.|+|.++...... ++.|. ++.|.... -++-+..+.| .+
T Consensus 25 ead~ItaVefd~t----g~YlatGDkgGRVvlfer~~s~----~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~ 96 (460)
T COG5170 25 EADKITAVEFDET----GLYLATGDKGGRVVLFEREKSY----GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD 96 (460)
T ss_pred ccceeeEEEeccc----cceEeecCCCceEEEeeccccc----ccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence 3467889999776 4799999999999998766442 11121 22332110 0112334444 44
Q ss_pred CCceeEEEEecccceEEEEeCCcc-e-----------------------EEEE---e----------------eeCCcce
Q 017601 159 SQWSMAAVARSFSKSIDVYDQDIH-L-----------------------RTLR---T----------------LWYPSSL 195 (369)
Q Consensus 159 ~~~~~~a~~~s~d~~i~lwd~~~~-~-----------------------~~~~---~----------------~~~~~~v 195 (369)
.+...+... ..|++|+||.+-.. + +.+. . ..|+..+
T Consensus 97 t~r~hFLls-tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 97 TGRNHFLLS-TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCcceEEEe-cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 455566666 79999999975211 0 0000 0 0122222
Q ss_pred eeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceee--eeeccC----CCcEEEEEECCCC--cEEEEeCCCcEEEE
Q 017601 196 NFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLH--RICGSV----GDILYAVCSSSTG--NIAVAGADRTVTIY 267 (369)
Q Consensus 196 ~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~--~~~~~~----~~~v~~v~~sp~g--~lasgs~D~~v~vw 267 (369)
+.+ .++.|. ..+-.++|=.|.+|++.... ++.. .++.+. ..-|++..|+|.. .+.-.+..|.|++-
T Consensus 176 NSi---S~NsD~-et~lSaDdLrINLWnl~i~D--~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 176 NSI---SFNSDK-ETLLSADDLRINLWNLEIID--GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eee---eecCch-heeeeccceeeeeccccccC--CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 222 233443 44444677889999987653 3322 222221 3468899999998 66677889999999
Q ss_pred eCCCcee------eee----------ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC-CceeEEEEcCC----
Q 017601 268 DPRRWSA------LSR----------WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRGDS---- 326 (369)
Q Consensus 268 D~~~~~~------~~~----------~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g~~---- 326 (369)
|+|.... +.. +.+- ...|..+.|++ +|+++++-. -.+|++||.+. ..++++..-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~ei-vsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEI-VSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHH-hhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHH
Confidence 9994221 111 1122 35688999999 999988643 24899999986 44566654332
Q ss_pred ----------CeeeeeE--cCCCCEEEEEeCCCcEEEEEC
Q 017601 327 ----------NWLGFSK--CSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 327 ----------~~~~~~~--~~d~~~l~sgs~dg~I~iWd~ 354 (369)
-+..+.. +-|...+.+||..+..-|+-.
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 0111111 226777888888887777753
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.84 E-value=3.4e-07 Score=88.16 Aligned_cols=148 Identities=15% Similarity=0.003 Sum_probs=98.2
Q ss_pred CCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCC--cEEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADR--TVTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~ 275 (369)
++||+..++.++.+ ..|.+||+.++ +........ ..+.+++|+||| .|+ +.+.++ .|.+||+.++..
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g---~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~- 270 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATG---QREKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL- 270 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEeecCC--CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-
Confidence 45677777776543 48999999876 333222222 566789999999 554 444444 588899887643
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEECC-C--eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC---cE
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGVD-Y--EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG---SI 349 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~--~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg---~I 349 (369)
..+..+ ........|+| |++.|+..+.. + .|.++|+.+++................++++++|+..+.++ .|
T Consensus 271 ~~l~~~-~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 271 TRLTNG-PGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred EECCCC-CCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEE
Confidence 344445 45556789999 99988876653 3 68888887765433322221112334467899998888776 89
Q ss_pred EEEECCCCc
Q 017601 350 FVADVVAKE 358 (369)
Q Consensus 350 ~iWd~~~~~ 358 (369)
++||+.++.
T Consensus 349 ~~~d~~~~~ 357 (417)
T TIGR02800 349 AVMDLDGGG 357 (417)
T ss_pred EEEeCCCCC
Confidence 999988764
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.83 E-value=1.8e-08 Score=105.55 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=128.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG 230 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~ 230 (369)
...=+|..+. .+++ +.|+.|++|.-+ ..+-..++... ..+..+ .|+.+|+.+..+-.||.+.+|... +
T Consensus 2213 r~~sHp~~~~-Yltg-s~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~---~f~~qGnk~~i~d~dg~l~l~q~~-p--- 2282 (2439)
T KOG1064|consen 2213 RMTSHPSDPY-YLTG-SQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRS---RFNHQGNKFGIVDGDGDLSLWQAS-P--- 2282 (2439)
T ss_pred eecCCCCCce-EEec-CCCceEEEEeccCCCeEEEeeccCc-chhhhh---hhcccCCceeeeccCCceeecccC-C---
Confidence 3444665554 4455 789999999865 34444444432 322222 234468888888899999999886 3
Q ss_pred ceeeeeeccCCCcEEEEEECCCCcEEEE---eCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 231 GCLHRICGSVGDILYAVCSSSTGNIAVA---GADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g~lasg---s~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
++....+.| ......+.|-. ..++++ +.++.+.+||.-. ...++ +.| ...++.+++-| ..+.|+|||.
T Consensus 2283 k~~~s~qch-nk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P-~~qllisggr 2356 (2439)
T KOG1064|consen 2283 KPYTSWQCH-NKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAP-KHQLLISGGR 2356 (2439)
T ss_pred cceeccccC-Cccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcC-cceEEEecCC
Confidence 566555544 45666666654 344554 4588999999654 23344 677 89999999999 8899999999
Q ss_pred CCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|.|++||++..+++++|.. .....++++|+..|.|+||++.+.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcccc
Confidence 99999999998877777743 113578999999999999999765
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=9e-06 Score=86.53 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=101.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc-ceEEEEe----------------eeCCcceeeeccCCCCCCCC-cEEEEE
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI-HLRTLRT----------------LWYPSSLNFVQNLSPVNGGP-NMLAVT 214 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~-~lla~s 214 (369)
+++|+|.+..++++. +.++.|++||... .+..+.. ...|..+.+ +++++ .+++-+
T Consensus 687 gVa~dp~~g~LyVad-~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav------spdG~~LYVADs 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIAM-AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL------SPDLKELYIADS 759 (1057)
T ss_pred EEEEecCCCeEEEEE-CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE------eCCCCEEEEEEC
Confidence 799999666566655 7889999998743 2222210 112222322 34555 444556
Q ss_pred cCCeEEEEeCCcccCCceee-----------eeecc-------CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee
Q 017601 215 EGCQLTIWDLRMKENGGCLH-----------RICGS-------VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~-----------~~~~~-------~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~ 275 (369)
.+++|++||+.++.. ..+. .+-.. .......++|+++| .+++-..++.|++||..++...
T Consensus 760 ~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 760 ESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 689999999987521 0000 00000 00134688999999 7788888999999999876554
Q ss_pred eec-------------cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 276 SRW-------------VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 276 ~~~-------------~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
... .+. -.....+++++ +|+++++-+.+++|++||+++++.
T Consensus 839 tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQ-LSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeccCCcCCCCCcccccc-cCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 221 112 23578899999 999999988999999999988754
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.77 E-value=1.2e-05 Score=75.55 Aligned_cols=250 Identities=16% Similarity=0.125 Sum_probs=137.4
Q ss_pred eEEEEeecCCCCceEEEEEec----CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 96 QSIALAETDSSGYMVLGSVDS----YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.-|+++|++ .+|.+.+. .|.|..|.++.....+..... .. ....+-+.++++|++..++++. ..+
T Consensus 40 s~l~~~~~~----~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~-----~~g~~p~~i~~~~~g~~l~van-y~~ 108 (345)
T PF10282_consen 40 SWLAVSPDG----RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VP-----SGGSSPCHIAVDPDGRFLYVAN-YGG 108 (345)
T ss_dssp CCEEE-TTS----SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EE-----ESSSCEEEEEECTTSSEEEEEE-TTT
T ss_pred ceEEEEeCC----CEEEEEEccccCCCCEEEEEECCCcceeEEeee-ec-----cCCCCcEEEEEecCCCEEEEEE-ccC
Confidence 456777763 45655544 578888888754211111000 00 0011234699999665554444 679
Q ss_pred ceEEEEeCCc--ce-EEEEeeeC----C----cceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccC-Cceeeeeec
Q 017601 172 KSIDVYDQDI--HL-RTLRTLWY----P----SSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKEN-GGCLHRICG 238 (369)
Q Consensus 172 ~~i~lwd~~~--~~-~~~~~~~~----~----~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~-~~~~~~~~~ 238 (369)
++|.++++.. .+ .......+ + ......+...++|++..++++. ....|.+|++..... ......+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999998753 11 11111110 0 0000111112345666665543 245899999976521 112233333
Q ss_pred cCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCC--Cce--eeeecc---c-c-ccCceEEEEEcCCCCCEEEEEE-CCC
Q 017601 239 SVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPR--RWS--ALSRWV---H-C-SKYEITGLSFSSIDSNYIYVQG-VDY 306 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~--~~~--~~~~~~---~-h-~~~~v~~l~~sp~d~~~l~s~s-~D~ 306 (369)
..+....-++|+|++ ++ ++.-.+++|.++++. ++. .+..+. . . .......+.++| |+++|+.+. .++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~ 267 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSN 267 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTT
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCC
Confidence 325678899999999 44 556678899999988 332 222221 1 1 012578999999 999987765 467
Q ss_pred eEEEEECcC--Cce--eEEEE--cCCCeeeeeEcCCCCEEEEEe-CCCcEEEEEC--CCCc
Q 017601 307 EVFCGQWRE--SSK--VFAFR--GDSNWLGFSKCSNRDVLGGWS-DSGSIFVADV--VAKE 358 (369)
Q Consensus 307 ~i~vwd~~~--~~~--~~~~~--g~~~~~~~~~~~d~~~l~sgs-~dg~I~iWd~--~~~~ 358 (369)
+|-+|++.. +++ +..+. |.. -..+...++|++|+.+. .++.|.+|++ ++|.
T Consensus 268 sI~vf~~d~~~g~l~~~~~~~~~G~~-Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 268 SISVFDLDPATGTLTLVQTVPTGGKF-PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEEECTTTTTEEEEEEEEESSSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEEEEecCCCceEEEEEEeCCCCC-ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 999999943 332 22222 221 13555577999888776 5679999976 4554
No 260
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.77 E-value=2.5e-08 Score=61.56 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=37.0
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
|+++.++.+| ...|++++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h-~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGH-SSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESS-SSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCC-CCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4688899999 99999999999 999999999999999998
No 261
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1.5e-06 Score=75.04 Aligned_cols=212 Identities=12% Similarity=-0.018 Sum_probs=124.6
Q ss_pred eEEEEeecCC-CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceE
Q 017601 96 QSIALAETDS-SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSI 174 (369)
Q Consensus 96 ~~l~~s~~~~-~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i 174 (369)
+.+.|.|..- .+...||.+...|...+|...+. +++.+.+..+..++. -+...+- ....+..+ +.|.++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn----~~h~~~cd~snn~v~--~~~r~cd---~~~~~~i~-sndht~ 140 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN----DGHLYQCDVSNNDVT--LVKRYCD---LKFPLNIA-SNDHTG 140 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCc----ccceeeecccccchh--hhhhhcc---cccceeec-cCCcce
Confidence 3455555310 23468888889999999988754 233344333222111 0001111 12234555 789999
Q ss_pred EEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-
Q 017601 175 DVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG- 253 (369)
Q Consensus 175 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g- 253 (369)
+++++.........+...-.++.. .+++|+..++++++...|..|.+.... ...+........+.=.+.+|+...
T Consensus 141 k~~~~~~~s~~~~~h~~~~~~ns~---~~snd~~~~~~Vgds~~Vf~y~id~~s-ey~~~~~~a~t~D~gF~~S~s~~~~ 216 (344)
T KOG4532|consen 141 KTMVVSGDSNKFAVHNQNLTQNSL---HYSNDPSWGSSVGDSRRVFRYAIDDES-EYIENIYEAPTSDHGFYNSFSENDL 216 (344)
T ss_pred eEEEEecCcccceeeccccceeee---EEcCCCceEEEecCCCcceEEEeCCcc-ceeeeeEecccCCCceeeeeccCcc
Confidence 999765322111111110112222 244666777778888999999987541 123332222224556788999999
Q ss_pred cEEEEeCCCcEEEEeCCCc-eeeee---ccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEE
Q 017601 254 NIAVAGADRTVTIYDPRRW-SALSR---WVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~-~~~~~---~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~ 322 (369)
.+|++..||++.|||+|.. .+..+ -+.|+.+.+..+.|+| -|. -|+--+ .=+.+.+.|+++.+..+.+
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 9999999999999999983 33222 2233399999999998 333 233333 3468999999986544444
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=3.1e-06 Score=81.65 Aligned_cols=209 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred cceeeEEEEeecCCCCceEE-EEEec--CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 92 RSEVQSIALAETDSSGYMVL-GSVDS--YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~l-as~d~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
...+.+=+||||+. ...+ ..... ...||+.++..+.. ..+.... +.-...+|+|++..++.+.
T Consensus 184 ~~~~~sP~wSPDG~--~~~~~y~S~~~g~~~I~~~~l~~g~~------~~lt~~~-----g~~~~p~wSPDG~~Laf~s- 249 (428)
T PRK01029 184 HSLSITPTWMHIGS--GFPYLYVSYKLGVPKIFLGSLENPAG------KKILALQ-----GNQLMPTFSPRKKLLAFIS- 249 (428)
T ss_pred CCCcccceEccCCC--ceEEEEEEccCCCceEEEEECCCCCc------eEeecCC-----CCccceEECCCCCEEEEEE-
Confidence 34456678999852 2222 23333 34688888765421 1111110 1112578999665544433
Q ss_pred cccc----eEEEEeCCc----ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeeeeecc
Q 017601 169 SFSK----SIDVYDQDI----HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 169 s~d~----~i~lwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
..++ .+.+|+... ..+.+... ....... ..++||+..|+.+++ ++...||.+.....+.....+...
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~---p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGN---PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCC---eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 3323 344465432 11222111 1111011 123467777887764 565556644321001233444433
Q ss_pred CCCcEEEEEECCCC-cEEEEeCC---CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC---CCeEEEEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGAD---RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV---DYEVFCGQ 312 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~D---~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~---D~~i~vwd 312 (369)
...+...+||||| .|+..+.+ ..|.+||+.+++.. .+... ...+....|+| ||+.|+..+. ...|.+||
T Consensus 326 -~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~-~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 326 -YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTS-PENKESPSWAI-DSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCC-CCCccceEECC-CCCEEEEEECCCCCceEEEEE
Confidence 3566788999999 77665443 36899999887654 33333 34567899999 9998875443 35788889
Q ss_pred CcCCceeEEE
Q 017601 313 WRESSKVFAF 322 (369)
Q Consensus 313 ~~~~~~~~~~ 322 (369)
+..++.....
T Consensus 402 l~~g~~~~Lt 411 (428)
T PRK01029 402 LITKKTRKIV 411 (428)
T ss_pred CCCCCEEEee
Confidence 8877655444
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=6.1e-06 Score=79.89 Aligned_cols=197 Identities=15% Similarity=0.068 Sum_probs=108.9
Q ss_pred CCccceeeEEEEeecCCCCceEEE-EEecC--CcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEE
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLG-SVDSY--GHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAA 165 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~la-s~d~~--g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a 165 (369)
..|...+.+.+|+||+ ..|+ +...+ ..|++|++.++.. ..+.... +.....+|+|++..++.
T Consensus 195 ~~~~~~~~~p~wSpDG----~~la~~s~~~~~~~l~~~~l~~g~~------~~l~~~~-----g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 195 LQSREPILSPRWSPDG----KRIAYVSFEQKRPRIFVQNLDTGRR------EQITNFE-----GLNGAPAWSPDGSKLAF 259 (430)
T ss_pred ecCCCceeeeeECCCC----CEEEEEEcCCCCCEEEEEECCCCCE------EEccCCC-----CCcCCeEECCCCCEEEE
Confidence 3566778899999985 3443 33332 4689999875421 1111111 11225899996654444
Q ss_pred EEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-C--CeEEEEeCCcccCCceeeeeecc
Q 017601 166 VARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-G--CQLTIWDLRMKENGGCLHRICGS 239 (369)
Q Consensus 166 ~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d--~~v~iwD~~~~~~~~~~~~~~~~ 239 (369)
+. +.++ .|.+||... ..+.+.. +....... .++||+..++..++ + ..|.++|+.++ + ...+...
T Consensus 260 ~~-~~~g~~~Iy~~d~~~~~~~~lt~--~~~~~~~~---~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~-~~~lt~~ 329 (430)
T PRK00178 260 VL-SKDGNPEIYVMDLASRQLSRVTN--HPAIDTEP---FWGKDGRTLYFTSDRGGKPQIYKVNVNGG---R-AERVTFV 329 (430)
T ss_pred EE-ccCCCceEEEEECCCCCeEEccc--CCCCcCCe---EECCCCCEEEEEECCCCCceEEEEECCCC---C-EEEeecC
Confidence 44 4454 577778753 2222221 11111111 13466777777664 3 35777787766 3 2333222
Q ss_pred CCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC---CeEEEEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD---YEVFCGQ 312 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D---~~i~vwd 312 (369)
.......+|+|+| .|+..+. ++ .|.+||+.+++.. .+.. ........|+| ||+.++..+.+ ..+.+++
T Consensus 330 -~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 330 -GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred -CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECC-CCCEEEEEEecCCceEEEEEE
Confidence 1233456899999 6665543 33 5788999876542 2221 11223568999 99998877654 2466667
Q ss_pred CcC
Q 017601 313 WRE 315 (369)
Q Consensus 313 ~~~ 315 (369)
+..
T Consensus 405 ~~g 407 (430)
T PRK00178 405 ING 407 (430)
T ss_pred CCC
Confidence 643
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=5.4e-05 Score=68.31 Aligned_cols=262 Identities=13% Similarity=0.069 Sum_probs=145.3
Q ss_pred ccccccccCCccceeeEEEEeecCCCCceEEEEE---ecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEEC
Q 017601 81 MDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSV---DSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFS 157 (369)
Q Consensus 81 ~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~---d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (369)
.....+++..+.+..+=|+|+|+. ..|.++ +..|.+-.+.++.....+........+ ..+-+-++++
T Consensus 28 g~l~~~~~v~~~~nptyl~~~~~~----~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------g~~p~yvsvd 97 (346)
T COG2706 28 GELSLLQLVAELGNPTYLAVNPDQ----RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------GSPPCYVSVD 97 (346)
T ss_pred cccchhhhccccCCCceEEECCCC----CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC------CCCCeEEEEC
Confidence 334455566777888888998873 455554 235677777776432211111111111 0111469999
Q ss_pred CCCceeEEEEecccceEEEEeCCc---ceEEEEeeeCCcc-------eeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDI---HLRTLRTLWYPSS-------LNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~---~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
+++. .+.++.-.-+.|.++-+.. .........|... -.-.++..+.|++..++++.- -..|.+|++..
T Consensus 98 ~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 98 EDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred CCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 9655 4455535678999996531 1111122222111 001222335577667776542 34799999986
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCCc-eeeeecccc--------ccCceEEEEEcCCC
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPRRW-SALSRWVHC--------SKYEITGLSFSSID 295 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~~-~~~~~~~~h--------~~~~v~~l~~sp~d 295 (369)
+.. ..........+..-.-|.|+|++ .. +..--+++|-+|..... ..+..++.+ -....-.|..+| |
T Consensus 177 g~L-~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-d 254 (346)
T COG2706 177 GKL-TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-D 254 (346)
T ss_pred Ccc-ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-C
Confidence 521 11111111114667789999999 33 44556999999998762 222222211 024577899999 9
Q ss_pred CCEEEEEEC-CCeEEEEECcCC-ceeEEEE---cCCC-eeeeeEcCCCCEEEEEeCC-CcEEEEECC
Q 017601 296 SNYIYVQGV-DYEVFCGQWRES-SKVFAFR---GDSN-WLGFSKCSNRDVLGGWSDS-GSIFVADVV 355 (369)
Q Consensus 296 ~~~l~s~s~-D~~i~vwd~~~~-~~~~~~~---g~~~-~~~~~~~~d~~~l~sgs~d-g~I~iWd~~ 355 (369)
|++|+++-. ...|-++-+... ..+.... -+.. -..+...+++++|+.+.++ ..|.++...
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999988754 347888877653 2222221 1111 0234445688888888775 578888554
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.70 E-value=3.1e-06 Score=75.52 Aligned_cols=197 Identities=13% Similarity=0.066 Sum_probs=120.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcc-ccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDR-LTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
..+.++.+.++ ..+|..+=..|++.-+.+....+.... ..|. .|. .-+.++-|+. ....++++ +.|
T Consensus 69 ~~~~~~~y~~e----~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~--~h~-----~~v~~~if~~-~~e~V~s~-~~d 135 (404)
T KOG1409|consen 69 SPCSAMEYVSE----SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL--AHQ-----ARVSAIVFSL-THEWVLST-GKD 135 (404)
T ss_pred CCceEeeeecc----ceEEEEEEecceEEEEEhhhhhhhcchhhhhh--hhh-----cceeeEEecC-CceeEEEe-ccc
Confidence 56778888876 367777777888887766543221111 1111 111 2244677776 44566666 677
Q ss_pred ceEEEE--eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 172 KSIDVY--DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 172 ~~i~lw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
+.+.-- ..+..+-.+..........+.. ...-++ ..++|.+-.+... ....+.++.++ .+.+++++
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~---------~~~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h-~~~~~~l~ 204 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPASALQFDA---------LYAFVGDHSGQITMLKLEQN-GCQLITTFNGH-TGEVTCLK 204 (404)
T ss_pred cceEEEeeccCCcccceEeeccCCCCceee---------EEEEecccccceEEEEEeec-CCceEEEEcCc-ccceEEEE
Confidence 765321 1122111111111111111100 011122 2344444333221 11567778877 79999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|.|.. +|.+|+.|..|.+||+--.+ ....+.+| .+.|..+..-+ .-+.|.|++.|+.|.+||++.
T Consensus 205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence 99988 99999999999999986533 34578899 88999998877 778899999999999999864
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=4.4e-06 Score=80.86 Aligned_cols=148 Identities=14% Similarity=0.046 Sum_probs=96.3
Q ss_pred CCCCCCcEEEEEcC---CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCC--cEEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTEG---CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADR--TVTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~d---~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~--~v~vwD~~~~~~~ 275 (369)
++||+..|+.++.+ ..|.+||+.++ ... .+... .+.+.+.+|+||| .|+ +.+.++ .|.+||+.+++.
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~-~l~~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~- 279 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTG---RRE-QITNF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL- 279 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCC---CEE-EccCC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-
Confidence 34677788777643 46999999877 332 22221 2445678999999 665 455555 588889987654
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CC--eEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC-C--c
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY--EVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS-G--S 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~--~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d-g--~ 348 (369)
..+..+ ........|+| |++.|+..+. ++ .|+++|+.+++..... .+... .....++||+.|+-.+.+ + .
T Consensus 280 ~~lt~~-~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~-~~~~~Spdg~~i~~~~~~~~~~~ 356 (430)
T PRK00178 280 SRVTNH-PAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN-ARPRLSADGKTLVMVHRQDGNFH 356 (430)
T ss_pred EEcccC-CCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc-cceEECCCCCEEEEEEccCCceE
Confidence 345555 56677889999 9998776654 33 6778888776644332 23221 123346788888766643 3 5
Q ss_pred EEEEECCCCcc
Q 017601 349 IFVADVVAKEN 359 (369)
Q Consensus 349 I~iWd~~~~~~ 359 (369)
|.+||+.+++.
T Consensus 357 l~~~dl~tg~~ 367 (430)
T PRK00178 357 VAAQDLQRGSV 367 (430)
T ss_pred EEEEECCCCCE
Confidence 88899988754
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=84.59 Aligned_cols=145 Identities=12% Similarity=0.148 Sum_probs=103.1
Q ss_pred cccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc--CCceeeeeeccCCCcEE
Q 017601 169 SFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE--NGGCLHRICGSVGDILY 245 (369)
Q Consensus 169 s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~--~~~~~~~~~~~~~~~v~ 245 (369)
+.+..|-|-|+. .+.+.+.+....-+..|.. .++.+..+...|.|..+|+|.+. ++.+.+.+-|. ..|+
T Consensus 231 G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~------s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~--Ssvt 302 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQQSFQSKSDVFALQFAG------SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD--SSVT 302 (425)
T ss_pred cccceeEEEEeecccccccccchhHHHHHhcc------cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC--cchh
Confidence 456667777764 3334443333333333433 24577778889999999999763 23577778776 8899
Q ss_pred EEEECC-CC-cEEEEeCCCcEEEEeCCCcee---eeeccccccCceEE--EEEcCCCCCEEEEEECCCeEEEEECcCCce
Q 017601 246 AVCSSS-TG-NIAVAGADRTVTIYDPRRWSA---LSRWVHCSKYEITG--LSFSSIDSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 246 ~v~~sp-~g-~lasgs~D~~v~vwD~~~~~~---~~~~~~h~~~~v~~--l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
++..-. ++ .|.+.+.+|+|++||.|--++ +.++.|| -..-.- +...+ ....++++|.|...|||.++.+.+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-ccccccccccccc-ccceEEEccCeeEEEEEecccCce
Confidence 986655 44 788888999999999997655 8999999 333222 23455 667888999999999999999888
Q ss_pred eEEEE
Q 017601 319 VFAFR 323 (369)
Q Consensus 319 ~~~~~ 323 (369)
+.++.
T Consensus 381 l~tip 385 (425)
T KOG2695|consen 381 LCTIP 385 (425)
T ss_pred eeccC
Confidence 77764
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.2e-05 Score=78.20 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=105.2
Q ss_pred eEEEECCCCceeEEEEecccc--eEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcCC--eEEEEeCC
Q 017601 152 SGLCFSPSQWSMAAVARSFSK--SIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGC--QLTIWDLR 225 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~--~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~--~v~iwD~~ 225 (369)
...+|+|++.. ++.....++ .|.+||... ..+.+...... ... ..++||+..|+.+ +.++ .|.+||+.
T Consensus 221 ~~p~wSPDG~~-La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~--~~~---~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 221 MSPAWSPDGRK-LAYVSFENRKAEIFVQDIYTQVREKVTSFPGI--NGA---PRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred cCceECCCCCE-EEEEEecCCCcEEEEEECCCCCeEEecCCCCC--cCC---eeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 36899996654 444423343 477778643 22222221111 111 1234677777654 4455 47778887
Q ss_pred cccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeee-eccccccCceEEEEEcCCCCCEEE
Q 017601 226 MKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALS-RWVHCSKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~-~~~~h~~~~v~~l~~sp~d~~~l~ 300 (369)
++ + +..+..+ .......+|+||| .|+..+. ++ .|.++|+.+++... ++.++ .....+|+| ||++|+
T Consensus 295 tg---~-~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~---~~~~~~~Sp-DG~~l~ 365 (448)
T PRK04792 295 TK---A-LTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE---QNLGGSITP-DGRSMI 365 (448)
T ss_pred CC---C-eEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC---CCcCeeECC-CCCEEE
Confidence 66 3 3333333 2456778999999 6655443 44 46666877665433 23333 345679999 999987
Q ss_pred EEECC-C--eEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC-CCc--EEEEECCC
Q 017601 301 VQGVD-Y--EVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD-SGS--IFVADVVA 356 (369)
Q Consensus 301 s~s~D-~--~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg~--I~iWd~~~ 356 (369)
..+.+ + .|.++|+.+++......+... .....++||+.|+-.+. ++. +++++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d-~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQVLTSTRLD-ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeEEccCCCCC-CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 76653 3 456678777654332222110 12234678887665444 443 67777743
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=7.6e-06 Score=79.52 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred CCCCCCcEEEEEc-C--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCCCc--EEEEeCCCceee
Q 017601 203 PVNGGPNMLAVTE-G--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGADRT--VTIYDPRRWSAL 275 (369)
Q Consensus 203 ~~~~~~~lla~s~-d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D~~--v~vwD~~~~~~~ 275 (369)
++||+..|+.++. + ..|.+||+.++ +.. .+... .....+.+|+||| .|+ +.+.++. |.+||+.+++.
T Consensus 225 wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~-~lt~~-~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~- 298 (448)
T PRK04792 225 WSPDGRKLAYVSFENRKAEIFVQDIYTQ---VRE-KVTSF-PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL- 298 (448)
T ss_pred ECCCCCEEEEEEecCCCcEEEEEECCCC---CeE-EecCC-CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence 3467777877654 2 36889999876 322 22211 1334578999999 565 4566675 77778877654
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CC--eEEEEECcCCceeEE-EEcCCCeeeeeEcCCCCEEEEEeC-CC--c
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY--EVFCGQWRESSKVFA-FRGDSNWLGFSKCSNRDVLGGWSD-SG--S 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~--~i~vwd~~~~~~~~~-~~g~~~~~~~~~~~d~~~l~sgs~-dg--~ 348 (369)
..+..+ ........|+| |++.|+..+. ++ .|.++|+.+++.... +.++.. .....++||++|+-.+. ++ .
T Consensus 299 ~~lt~~-~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~-~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 299 TRITRH-RAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN-LGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred EECccC-CCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC-cCeeECCCCCEEEEEEecCCceE
Confidence 445555 56678899999 9998876654 33 577778777664433 333331 12344679988776555 44 4
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
|.++|+.+++
T Consensus 376 I~~~dl~~g~ 385 (448)
T PRK04792 376 IARQDLETGA 385 (448)
T ss_pred EEEEECCCCC
Confidence 5567877765
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.63 E-value=1.9e-07 Score=98.26 Aligned_cols=218 Identities=9% Similarity=0.129 Sum_probs=136.9
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
..|.++.=.|. ...-.+++.+|.+.+|....+.. ...+...+. .-++.+.|+.+++ .+.++ -.||
T Consensus 2209 ~~v~r~~sHp~----~~~Yltgs~dgsv~~~~w~~~~~---v~~~rt~g~------s~vtr~~f~~qGn-k~~i~-d~dg 2273 (2439)
T KOG1064|consen 2209 ENVRRMTSHPS----DPYYLTGSQDGSVRMFEWGHGQQ---VVCFRTAGN------SRVTRSRFNHQGN-KFGIV-DGDG 2273 (2439)
T ss_pred CceeeecCCCC----CceEEecCCCceEEEEeccCCCe---EEEeeccCc------chhhhhhhcccCC-ceeee-ccCC
Confidence 44555555553 24555677888888887764411 111111111 1134678888554 55665 6799
Q ss_pred eEEEEeCCc-ceEEEEeee-CCcceeeeccCCCCCCCCcEEEE---EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE
Q 017601 173 SIDVYDQDI-HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAV---TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV 247 (369)
Q Consensus 173 ~i~lwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~---s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v 247 (369)
.+.+|.... .....+... .-..+.|+. ..++++ ++++.+.+||.--......++ ..|. +.++++
T Consensus 2274 ~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~--~gaT~l 2342 (2439)
T KOG1064|consen 2274 DLSLWQASPKPYTSWQCHNKALSDFRFIG--------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHD--GGATVL 2342 (2439)
T ss_pred ceeecccCCcceeccccCCccccceeeee--------hhhhccccCCCCCcccchhcccCcccceee-eecC--CCceEE
Confidence 999998763 222221110 112334443 234443 357899999987554445566 3344 889999
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
++-|.. .|++||.+|-|++||+|..+..++++. +. ...++++++..|.++||++.....+++|.+..
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh--hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999999 999999999999999998887777664 11 34689999999999999999877777775421
Q ss_pred CeeeeeE-------cCCCCEEEEEeCCCc
Q 017601 327 NWLGFSK-------CSNRDVLGGWSDSGS 348 (369)
Q Consensus 327 ~~~~~~~-------~~d~~~l~sgs~dg~ 348 (369)
.-.++.. .-....|++++.||+
T Consensus 2411 ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2411 AKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhhcCceeeeccCceEEEecCCCC
Confidence 1123311 113456777777763
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.61 E-value=0.0001 Score=68.45 Aligned_cols=199 Identities=10% Similarity=0.084 Sum_probs=117.2
Q ss_pred EEEECCCCceeEEEEec---------ccceEEEEeCCc--ceEEEEeeeCCc--ceeeeccCCCCCCCCcEEEEE-c-CC
Q 017601 153 GLCFSPSQWSMAAVARS---------FSKSIDVYDQDI--HLRTLRTLWYPS--SLNFVQNLSPVNGGPNMLAVT-E-GC 217 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s---------~d~~i~lwd~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~lla~s-~-d~ 217 (369)
++ ++|++..+++++ + .+..|.+||... .+..+..-..|. ....-....+++||..++... + +.
T Consensus 51 ~~-~spDg~~lyva~-~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 51 PV-VASDGSFFAHAS-TVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP 128 (352)
T ss_pred ee-ECCCCCEEEEEe-ccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence 44 999666555544 7 688999999863 333343211111 011111112335565555444 3 78
Q ss_pred eEEEEeCCcccCCceeeeeeccCCC------------------------------cEEEE--------------EECC-C
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGD------------------------------ILYAV--------------CSSS-T 252 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~------------------------------~v~~v--------------~~sp-~ 252 (369)
.|.+.|+.++ +.+..+...... .+... .|++ +
T Consensus 129 ~V~VvD~~~~---kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d 205 (352)
T TIGR02658 129 AVGVVDLEGK---AFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS 205 (352)
T ss_pred EEEEEECCCC---cEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence 8999999876 444433211000 01111 1223 6
Q ss_pred C-cEEEEeCCCcEEEEeCCC-----ceeeeecccc------ccCceEEEEEcCCCCCEEEEEE----------CCCeEEE
Q 017601 253 G-NIAVAGADRTVTIYDPRR-----WSALSRWVHC------SKYEITGLSFSSIDSNYIYVQG----------VDYEVFC 310 (369)
Q Consensus 253 g-~lasgs~D~~v~vwD~~~-----~~~~~~~~~h------~~~~v~~l~~sp~d~~~l~s~s----------~D~~i~v 310 (369)
| ++.+..+ |+|.+.|+.. .+....+... ....+.-++++| +++.+.... ..++|.+
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEE
Confidence 6 5544444 9999999543 3333322211 022334499999 888877743 1258999
Q ss_pred EECcCCceeEEEE-cCCCeeeeeEcCCCC-EEEEEe-CCCcEEEEECCCCcc
Q 017601 311 GQWRESSKVFAFR-GDSNWLGFSKCSNRD-VLGGWS-DSGSIFVADVVAKEN 359 (369)
Q Consensus 311 wd~~~~~~~~~~~-g~~~~~~~~~~~d~~-~l~sgs-~dg~I~iWd~~~~~~ 359 (369)
+|..+.+.+..+. |+. ..++..++|++ +|+..+ .++.|.+.|+++++.
T Consensus 284 iD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999888876 443 34677788998 888777 578999999998864
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=4.6e-07 Score=87.93 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=129.4
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
++..+.++|.+..+ |.+ +.-+ +.+.|.+......+.+. .+-.+...++.+....+..+++ .....-.+|++...
T Consensus 26 ~~~a~si~p~grdi-~lA-sr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDI-VLA-SRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKS 101 (1081)
T ss_pred cccceeeccccchh-hhh-hhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcC
Confidence 34467888865544 444 2222 34445543222222222 2334555555554443334444 34456679999865
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-ceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+...-..+.+| +..|+.+-|+|+. .+|+++.|-.|..||+|+ -.++..+..- ...-+.|.|+-.++..+|+ +.
T Consensus 102 s~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~vlas-sh 178 (1081)
T KOG0309|consen 102 SSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPNVLAS-SH 178 (1081)
T ss_pred CccceEEEEecC-ccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcchhhh-cc
Confidence 332322334444 7889999999998 999999999999999998 4566666554 4667889999877777765 56
Q ss_pred CCeEEEEECcCC-ceeEEEEcCCCeeeeeEcC----CCCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRES-SKVFAFRGDSNWLGFSKCS----NRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~-~~~~~~~g~~~~~~~~~~~----d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
.+.|++||.+.+ ..+..+++|. ..+.... -...+.+.+.||+|++||....
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred CCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 778999999874 5778888876 3222211 3456889999999999997653
No 273
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=2.2e-07 Score=57.30 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=34.3
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD 268 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD 268 (369)
++++.+.+| ...|++++|+|++ .|++|+.|++|++||
T Consensus 2 ~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 577888877 8999999999999 999999999999998
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.54 E-value=5.2e-06 Score=74.14 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=137.0
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+|.+.|++...-|.+ .-+.+.+.+.++++|--....+ .-...+...|. +.+.+++++ ....+.++
T Consensus 21 eG~~d~vn~~~l~~~e----~gv~~~s~drtvrv~lkrds~q-~wpsI~~~mP~-------~~~~~~y~~-e~~~L~vg- 86 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKE----EGVISVSEDRTVRVWLKRDSGQ-YWPSIYHYMPS-------PCSAMEYVS-ESRRLYVG- 86 (404)
T ss_pred cCchhhhhhheeccCC----CCeEEccccceeeeEEeccccc-cCchhhhhCCC-------CceEeeeec-cceEEEEE-
Confidence 4888889887776653 2344455556777775432211 00111222221 234677777 45566666
Q ss_pred cccceEEEEeCCcceEEE---Ee-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE
Q 017601 169 SFSKSIDVYDQDIHLRTL---RT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL 244 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v 244 (369)
...+++.-+........+ +. ..|...+.-+ .++.....+++.+.|..+.---.+.+ ..+..+.-. ..-
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~---if~~~~e~V~s~~~dk~~~~hc~e~~---~~lg~Y~~~--~~~ 158 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAI---VFSLTHEWVLSTGKDKQFAWHCTESG---NRLGGYNFE--TPA 158 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeE---EecCCceeEEEeccccceEEEeeccC---CcccceEee--ccC
Confidence 788888877543111111 11 1111111111 11112357788887776654444443 222111100 000
Q ss_pred EEEEECCCCcEEEEeCCCcEEEE--eCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc-eeEE
Q 017601 245 YAVCSSSTGNIAVAGADRTVTIY--DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-KVFA 321 (369)
Q Consensus 245 ~~v~~sp~g~lasgs~D~~v~vw--D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-~~~~ 321 (369)
.++.|.-. ....|...+.|.+- +...-.++.++.+| .++++++.|.| ....|.|++.|..+.+||+...+ ....
T Consensus 159 t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h-~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 159 SALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGH-TGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCc-ccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence 00000000 33444445554443 33456778899999 99999999999 88999999999999999997543 3344
Q ss_pred EEcCCCeeeeeE---cCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 322 FRGDSNWLGFSK---CSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g~~~~~~~~~---~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.||. ..+.. ..--..++|+++||.|.+||++..+.
T Consensus 236 l~gh~--~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 236 LQGHN--DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eccch--hhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 55665 22222 23557899999999999999987654
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.7e-05 Score=76.46 Aligned_cols=293 Identities=13% Similarity=0.089 Sum_probs=162.8
Q ss_pred ceeEEEecCCCceEEEEEEeCCeEEEEEEeCCchhhhcCCCccccccCcccccccccccCCccceeeEEEEeecCC----
Q 017601 30 TRLALHVNEDGCSCFVYIASGCHLYKLQVMMDDWFVSEGKDSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDS---- 105 (369)
Q Consensus 30 ~r~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~---- 105 (369)
+|-|+.-+++| .+..+++..|..++. + ..+ .+-..-.|+..|++++|+|-..
T Consensus 17 N~~A~Dw~~~G---LiAygshslV~VVDs---------------~-----s~q-~iqsie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 17 NRNAADWSPSG---LIAYGSHSLVSVVDS---------------R-----SLQ-LIQSIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccCccc---eEEEecCceEEEEeh---------------h-----hhh-hhhccccCccceeEEEeccCCCchhc
Confidence 35566666777 556677777766661 0 010 1111335789999999988431
Q ss_pred ----CCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC--Cc-eeEEEEecccceEEEEe
Q 017601 106 ----SGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS--QW-SMAAVARSFSKSIDVYD 178 (369)
Q Consensus 106 ----~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~--~~-~~~a~~~s~d~~i~lwd 178 (369)
....+||++|..|+|.+||...... .-.++++...+. .++|-|. +. ..+++- ....++.+|+
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~-----~~~l~~~~~~~q-----dl~W~~~rd~Srd~LlaI-h~ss~lvLwn 141 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASV-----INWLSHSNDSVQ-----DLCWVPARDDSRDVLLAI-HGSSTLVLWN 141 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhh-----hhhhcCCCcchh-----heeeeeccCcchheeEEe-cCCcEEEEEE
Confidence 1357899999999999999875521 112233333222 3555442 22 334443 4567899997
Q ss_pred CCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-CcccCCceeeeee---ccC--------------
Q 017601 179 QDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMKENGGCLHRIC---GSV-------------- 240 (369)
Q Consensus 179 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~~~~~~~~~~~---~~~-------------- 240 (369)
.+...+-.+....+..+..+..-||++ ..+..-+..|.+.+-+. ...+...+.+.++ .+.
T Consensus 142 tdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 142 TDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred ccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 654333333333334444455555654 34444444455544433 2222212222211 100
Q ss_pred --C------CcEEE--EEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCC--EEEEEECCCe
Q 017601 241 --G------DILYA--VCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSN--YIYVQGVDYE 307 (369)
Q Consensus 241 --~------~~v~~--v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~--~l~s~s~D~~ 307 (369)
. -..|| ++|+|.- .+.-..--+-+.|+|++-..++....-. .+.+.-+.+-| +++ .|...-.||.
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-r~~akfv~vlP-~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-RGGAKFVDVLP-DPRRDALFCLHSNGR 297 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-cCCcceeEecc-CCCcceEEEEecCCe
Confidence 0 01122 3577776 4444445677999999988888877655 66667777777 654 5888889999
Q ss_pred EEEEECcC----------------CceeEEEEcCCCeeee--eEcC-CCCEEEEEeCCCcEEEEECCCCcchh
Q 017601 308 VFCGQWRE----------------SSKVFAFRGDSNWLGF--SKCS-NRDVLGGWSDSGSIFVADVVAKENEI 361 (369)
Q Consensus 308 i~vwd~~~----------------~~~~~~~~g~~~~~~~--~~~~-d~~~l~sgs~dg~I~iWd~~~~~~~~ 361 (369)
+.+|--+. ++....++.......+ ..|| +...++---.+|.+.+|.+++++...
T Consensus 298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred EEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 99996654 1222222221111111 1244 35556656678889999999876543
No 276
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=0.00014 Score=69.78 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=84.1
Q ss_pred EEeeeCCcceeeeccCCCCCCCCcEEEEE----cCCe----EEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-c
Q 017601 186 LRTLWYPSSLNFVQNLSPVNGGPNMLAVT----EGCQ----LTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-N 254 (369)
Q Consensus 186 ~~~~~~~~~v~~~~~~~~~~~~~~lla~s----~d~~----v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~ 254 (369)
+++...|-.+.|... ++..+.++. .+|. -.+|+.... +.+++. ++.. ...|.|++++|+. .
T Consensus 202 irTE~dPl~~~Fs~~-----~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~-klqrvsvtsipL--~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 202 IRTENDPLDVEFSLN-----QPYQIHTVEQSISVKGEPSADSCIYECSRN-KLQRVSVTSIPL--PSQVICCARSPSEDK 273 (545)
T ss_pred EEecCCcEEEEccCC-----CCcEEEEEEEecCCCCCceeEEEEEEeecC-ceeEEEEEEEec--CCcceEEecCcccce
Confidence 344456666666542 345666642 3442 456777543 223333 3333 4889999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 255 IAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 255 lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
++.|..||+|.+||..++... +..+ .-..+.++|+| +|..+++|+.-|.+.+||+.-
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~--~~ka-~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTL--LAKA-EFIPTLIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEecCCeEEEEEcCCCeee--eeee-cccceEEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 999999999999998776433 3334 56688999999 999999999999999999865
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.42 E-value=5.9e-05 Score=71.66 Aligned_cols=183 Identities=16% Similarity=0.066 Sum_probs=106.0
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS- 239 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~- 239 (369)
.+.++ ..++.+..||.. +.+.............. ...|.- .++.++.+..++.+..+|.+++ +.+-+....
T Consensus 147 ~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~-~~sp~~-~~~~v~~~~~~g~v~ald~~tG---~~~W~~~~~~ 220 (377)
T TIGR03300 147 LVVVR-TNDGRLTALDAATGERLWTYSRVTPALTLRG-SASPVI-ADGGVLVGFAGGKLVALDLQTG---QPLWEQRVAL 220 (377)
T ss_pred EEEEE-CCCCeEEEEEcCCCceeeEEccCCCceeecC-CCCCEE-ECCEEEEECCCCEEEEEEccCC---CEeeeecccc
Confidence 44555 678889999874 33332221111000000 001111 1346677778899999999888 443322110
Q ss_pred -CC-Cc---EEEEEEC---CCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 240 -VG-DI---LYAVCSS---STGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 240 -~~-~~---v~~v~~s---p~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
.. .. ...+.-+ .++.+..++.++.+..||.++++.+-..... . ..... . ++..++.++.|+.+..+
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~-~~~p~--~-~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S-YQGPA--V-DDNRLYVTDADGVVVAL 294 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-ccCce--E-eCCEEEEECCCCeEEEE
Confidence 00 00 0011111 1347777888999999999998776544421 1 11222 2 45778888899999999
Q ss_pred ECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 312 QWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
|..+++.+-.+.... ......+ .+..|+.++.+|.|+++|..+++.
T Consensus 295 d~~tG~~~W~~~~~~--~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 295 DRRSGSELWKNDELK--YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ECCCCcEEEcccccc--CCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 999987765442211 0111112 567899999999999999988864
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=0.00018 Score=63.20 Aligned_cols=171 Identities=14% Similarity=0.111 Sum_probs=106.4
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeee--------CCcceeeeccCCCCCC-CCcEEEEEcCCe
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLW--------YPSSLNFVQNLSPVNG-GPNMLAVTEGCQ 218 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~--------~~~~v~~~~~~~~~~~-~~~lla~s~d~~ 218 (369)
..|.-++||| +..++|.+ ...|+|++||.- .....+.... ....+.|..... +++ ...|++...+|.
T Consensus 44 PQWRkl~WSp-D~tlLa~a-~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~-s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 44 PQWRKLAWSP-DCTLLAYA-ESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKK-SAQWSYELLVINYRGQ 120 (282)
T ss_pred chheEEEECC-CCcEEEEE-cCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecccc-ccccceeEEEEeccce
Confidence 3488999999 56788888 788999999974 3333332111 112233444321 111 236888888888
Q ss_pred EEEEeCCc--ccCCceeeeee--ccCCCcEEEEEECCCC-cEEEEeC-CCc----------EEEEeCCCceee-------
Q 017601 219 LTIWDLRM--KENGGCLHRIC--GSVGDILYAVCSSSTG-NIAVAGA-DRT----------VTIYDPRRWSAL------- 275 (369)
Q Consensus 219 v~iwD~~~--~~~~~~~~~~~--~~~~~~v~~v~~sp~g-~lasgs~-D~~----------v~vwD~~~~~~~------- 275 (369)
++=|=+.. .+.-+.-+.+. .++...|+++.|+|.- +|++||. ... +..|-+-++.+-
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence 88776532 22223333433 2335789999999997 5555543 222 444543321110
Q ss_pred ----------------ee-----ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 276 ----------------SR-----WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 276 ----------------~~-----~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.. ..+...+.|..+..|| ||+.||+...+|.|.+|++..-++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 00 0122256799999999 99999999999999999998866666554
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=6.6e-05 Score=71.20 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=122.2
Q ss_pred CccceeeEEEEeecCCCCceEEEE-----EecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeE
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGS-----VDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMA 164 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las-----~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 164 (369)
-|...|..+.+||.. ....+|. .+.-+.|++|.+.............+- ...-....|++.+..+|
T Consensus 163 l~~~~i~~f~lSpgp--~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-------kadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGP--EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-------KADKVQMKWNKLGTALL 233 (566)
T ss_pred eeccceeeEEecCCC--CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-------ccceeEEEeccCCceEE
Confidence 355677888888852 2344544 344557888877633211111111100 00112467777666665
Q ss_pred EEEe-cccc---------eEEEEeCCcceEEEEee--eCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCC
Q 017601 165 AVAR-SFSK---------SIDVYDQDIHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENG 230 (369)
Q Consensus 165 a~~~-s~d~---------~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~ 230 (369)
+.+. --|+ ++.++++......+... ....++.|. +++..++++- .-.++.|||++.
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~------~s~~EF~VvyGfMPAkvtifnlr~---- 303 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS------PSGREFAVVYGFMPAKVTIFNLRG---- 303 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC------CCCCEEEEEEecccceEEEEcCCC----
Confidence 5542 2344 46666655333333222 122334443 3455666654 356899999985
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE---
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG--- 303 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s--- 303 (369)
.++..+ + .++=+++-|+|.| +|+.++ --|.+-|||+.+.+++..+... ..+-+.|+| ||++++++.
T Consensus 304 ~~v~df-~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~P-dGe~flTATTaP 376 (566)
T KOG2315|consen 304 KPVFDF-P--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSP-DGEYFLTATTAP 376 (566)
T ss_pred CEeEeC-C--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC---CceEEEEcC-CCcEEEEEeccc
Confidence 355544 2 3778899999999 665554 4678999999998888888754 346689999 999999876
Q ss_pred ---CCCeEEEEECcC
Q 017601 304 ---VDYEVFCGQWRE 315 (369)
Q Consensus 304 ---~D~~i~vwd~~~ 315 (369)
.|+.++||+...
T Consensus 377 RlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEecCCeEEEEecC
Confidence 378899999754
No 280
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=0.00018 Score=63.47 Aligned_cols=179 Identities=18% Similarity=0.115 Sum_probs=109.2
Q ss_pred eEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee-ecc
Q 017601 163 MAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI-CGS 239 (369)
Q Consensus 163 ~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~-~~~ 239 (369)
.+.++ +.++.+..||.. +.+..... ..+....... +++.++.++.++.+..+|.+++ +.+-.. ...
T Consensus 38 ~v~~~-~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~------~~~~v~v~~~~~~l~~~d~~tG---~~~W~~~~~~ 106 (238)
T PF13360_consen 38 RVYVA-SGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV------DGGRVYVGTSDGSLYALDAKTG---KVLWSIYLTS 106 (238)
T ss_dssp EEEEE-ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE------ETTEEEEEETTSEEEEEETTTS---CEEEEEEE-S
T ss_pred EEEEE-cCCCEEEEEECCCCCEEEEeec-cccccceeee------cccccccccceeeeEecccCCc---ceeeeecccc
Confidence 45555 688999999973 33433332 2221111111 2567777778889999999998 555542 211
Q ss_pred C--CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc----------e-EEEEEcCCCCCEEEEEECC
Q 017601 240 V--GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE----------I-TGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 240 ~--~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~----------v-~~l~~sp~d~~~l~s~s~D 305 (369)
. ...........++ .++.+..++.|..+|+++|+.+-..... ... + ..+.+. ++ .+..++.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~ 182 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVIS--DG-RVYVSSGD 182 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECC--TT-EEEEECCT
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEE--CC-EEEEEcCC
Confidence 0 0111122222235 8888888999999999999997766544 322 1 233333 34 66777777
Q ss_pred Ce-EEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YE-VFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~-i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+. +.+ |+.+++.+-...-+. .......++..|+.++.++.|..||+++|+.
T Consensus 183 g~~~~~-d~~tg~~~w~~~~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKPISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SSEEEE-ETTTTEEEEEECSS---ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CeEEEE-ECCCCCEEEEecCCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 75 555 999988654333111 1111234778888888999999999999874
No 281
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.33 E-value=0.00041 Score=72.90 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=110.7
Q ss_pred eEEEECCCCceeEEEEecc------cceEEEEeCCcceEEEEeeeCCcce-eeeccCCCCCCCCcEEEEEc---CCeEEE
Q 017601 152 SGLCFSPSQWSMAAVARSF------SKSIDVYDQDIHLRTLRTLWYPSSL-NFVQNLSPVNGGPNMLAVTE---GCQLTI 221 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~------d~~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~lla~s~---d~~v~i 221 (369)
..++|.. ++.++|++ +. -..+++|+-+..+..... ....+ ..+.| .|.|+.+++.-. ...|.+
T Consensus 213 ~~ISWRG-DG~yFAVs-s~~~~~~~~R~iRVy~ReG~L~stSE--~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 213 VRISWRG-DGEYFAVS-SVEPETGSRRVIRVYSREGELQSTSE--PVDGLEGALSW---RPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred eEEEECC-CCcEEEEE-EEEcCCCceeEEEEECCCceEEeccc--cCCCccCCccC---CCCCCEEEEEEEcCCCcEEEE
Confidence 3688988 45577776 33 267999987643332211 11111 11222 244444444332 356777
Q ss_pred EeCCcccC-CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeeccccccCceEEEEEcCCCCC
Q 017601 222 WDLRMKEN-GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 222 wD~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
|. |.|.+ +.-.-++... ...|..++|++|+ .||.--.|. |.+|-..+. -..+.+.-.....+..+.|+|.++.
T Consensus 286 fE-rNGLrhgeF~l~~~~~-~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 286 FE-RNGLRHGEFTLRFDPE-EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred Ee-cCCcEeeeEecCCCCC-CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 76 33321 1111112122 4789999999999 888866555 999998883 3344444221344566999997788
Q ss_pred EEEEEECCCeEEEEECc----CC--------ceeEEEEcC------------------------CCeeeeeEcCCCCEEE
Q 017601 298 YIYVQGVDYEVFCGQWR----ES--------SKVFAFRGD------------------------SNWLGFSKCSNRDVLG 341 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~~----~~--------~~~~~~~g~------------------------~~~~~~~~~~d~~~l~ 341 (369)
.|.....++.+..+++. .+ ..+....|. .....+...+++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 78887776766554432 11 112222222 1112222233666699
Q ss_pred EEeCCCcEEEEECCCC
Q 017601 342 GWSDSGSIFVADVVAK 357 (369)
Q Consensus 342 sgs~dg~I~iWd~~~~ 357 (369)
.-..||.|.+|....+
T Consensus 443 vl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEECCCCEEEEEecCC
Confidence 9999999999985543
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.5e-06 Score=81.87 Aligned_cols=182 Identities=12% Similarity=0.062 Sum_probs=118.4
Q ss_pred CceeEEEEecccceEEEEeCCc---------ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI---------HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN 229 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~---------~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~ 229 (369)
+++-++++ |.|++|++|.+.. +..+++.+. ....+.|+. +.+. .++-|+.+.+||.-.+
T Consensus 746 NENSFiSA-SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-------~lr~-i~ScD~giHlWDPFig-- 814 (1034)
T KOG4190|consen 746 NENSFISA-SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-------DLRS-IASCDGGIHLWDPFIG-- 814 (1034)
T ss_pred cccceeec-cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-------ccce-eeeccCcceeeccccc--
Confidence 44567777 8999999997631 222222221 123344444 1222 2356888999997665
Q ss_pred Cceeeeee----ccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc-----ccccCceEEEEEcCCCCCE
Q 017601 230 GGCLHRIC----GSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV-----HCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 230 ~~~~~~~~----~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~-----~h~~~~v~~l~~sp~d~~~ 298 (369)
..+..+. +..++.|.|+. +-+. .+|-++...+|+++|.|..+-...|+ +. ..-+.+++..| .|+.
T Consensus 815 -r~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P-na~~R~iaVa~-~GN~ 890 (1034)
T KOG4190|consen 815 -RLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP-NALTRAIAVAD-KGNK 890 (1034)
T ss_pred -chhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCC-chheeEEEecc-Ccch
Confidence 4443221 11134455542 2233 44445889999999999976665554 23 35588999999 9999
Q ss_pred EEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE--cCCCCEEEEEeCCCcEEE-EECCCCc
Q 017601 299 IYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK--CSNRDVLGGWSDSGSIFV-ADVVAKE 358 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~--~~d~~~l~sgs~dg~I~i-Wd~~~~~ 358 (369)
++.+-..|.|-+.|.++++.+..++... ..... .|....|+....|.++.+ |..-.|.
T Consensus 891 lAa~LSnGci~~LDaR~G~vINswrpme--cdllqlaapsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 891 LAAALSNGCIAILDARNGKVINSWRPME--CDLLQLAAPSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred hhHHhcCCcEEEEecCCCceeccCCccc--chhhhhcCchhHHHHhhcccceeEeeehhcCCe
Confidence 9999999999999999998887776544 22222 335677888888999988 8766654
No 283
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.31 E-value=0.00028 Score=66.21 Aligned_cols=212 Identities=17% Similarity=0.180 Sum_probs=117.8
Q ss_pred eeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccc--cccc---cCCC-CCCCCCCeeEEEECCCCceeEEEEe
Q 017601 95 VQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRL--TYSV---LPQD-CGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 95 V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~--~~~~---~~~~-~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-..|+++|++ ..++++-=..|.+.++++..... +... .... .+.. .......+ .+.|+|++..++++.
T Consensus 89 p~~i~~~~~g---~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~d- 162 (345)
T PF10282_consen 89 PCHIAVDPDG---RFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPD- 162 (345)
T ss_dssp EEEEEECTTS---SEEEEEETTTTEEEEEEECTTSE-EEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEE-
T ss_pred cEEEEEecCC---CEEEEEEccCCeEEEEEccCCcc-cceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEe-
Confidence 3468888874 33444434578999999986421 1111 0100 0110 00111112 699999766666665
Q ss_pred cccceEEEEeCCcc---eEEEEee-----eCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCccc-CCceeeeeec
Q 017601 169 SFSKSIDVYDQDIH---LRTLRTL-----WYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKE-NGGCLHRICG 238 (369)
Q Consensus 169 s~d~~i~lwd~~~~---~~~~~~~-----~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~-~~~~~~~~~~ 238 (369)
-....|.+|+.+.. +...... ..|..+.|.. ++..+..+.+ +++|.++++.... ....++.+..
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~ 236 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST 236 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeee
Confidence 44457999987532 2221111 2445555554 4555555554 7899999988221 1122333221
Q ss_pred ---cC--CCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCC--c--eeeeeccccccCceEEEEEcCCCCCEEEEEEC-CC
Q 017601 239 ---SV--GDILYAVCSSSTG-NI-AVAGADRTVTIYDPRR--W--SALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-DY 306 (369)
Q Consensus 239 ---~~--~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~--~--~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~ 306 (369)
.. ......|+++||| +| ++--.+++|.+|++.. + +.+..+... ......++|+| ++++|+++.. ++
T Consensus 237 ~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~-~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 237 LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSP-DGRYLYVANQDSN 314 (345)
T ss_dssp CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-T-TSSEEEEEETTTT
T ss_pred ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeC-CCCEEEEEecCCC
Confidence 10 1257889999999 44 5555688999999832 3 333344333 34579999999 9999988875 56
Q ss_pred eEEEEECc--CCceeE
Q 017601 307 EVFCGQWR--ESSKVF 320 (369)
Q Consensus 307 ~i~vwd~~--~~~~~~ 320 (369)
.|.+|++. ++.+..
T Consensus 315 ~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 315 TVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred eEEEEEEeCCCCcEEE
Confidence 99999875 454433
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.29 E-value=0.00035 Score=66.34 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccC-c
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKY-E 285 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~-~ 285 (369)
++.++.++.++.+..||.+++ +.+-..... . ....... ++.++.++.||.+..+|..+++.+-..... .. .
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~~--~-~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~ 312 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSG---RVLWKRDAS--S-YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQ 312 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCC---cEEEeeccC--C-ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccccc-cCCc
Confidence 457778888999999999988 444433321 1 1122221 337888889999999999998877554321 11 1
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iW 352 (369)
..+... .+..++.++.|+.++++|.++++.+..+..+. ..+...| -++.|+.++.||.|+.+
T Consensus 313 ~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 313 LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CccccCCEEECCEEEEEeCCceEEEe
Confidence 222222 35688899999999999999999988887554 2233333 34568899999999876
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.29 E-value=3e-05 Score=68.55 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=95.3
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeee-CCc---ceee-eccCCCCCC-CCcEEEEEcCCeEEEEeC
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLW-YPS---SLNF-VQNLSPVNG-GPNMLAVTEGCQLTIWDL 224 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~-~~~---~v~~-~~~~~~~~~-~~~lla~s~d~~v~iwD~ 224 (369)
+.+++|+.+ ...+.+ +.|-.|.+|+....-..+.... .|. .+.+ +....|.|. ...+...+..|.|+|-|+
T Consensus 175 iNSiS~NsD-~et~lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 175 INSISFNSD-KETLLS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eeeeeecCc-hheeee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 457888874 444554 4788999998764322222111 111 1111 111112222 345666788899999999
Q ss_pred CcccC---Cceeee--eecc-------CCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeecccccc-------
Q 017601 225 RMKEN---GGCLHR--ICGS-------VGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWVHCSK------- 283 (369)
Q Consensus 225 ~~~~~---~~~~~~--~~~~-------~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~~h~~------- 283 (369)
|+... .+.+.. +.+- -...|..+.|+++| ++++ -.--+|++||++. ..++.+..-| .
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~pikTi~~h-~~l~~~l~ 329 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNPIKTIPMH-CDLMDELN 329 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCCceeechH-HHHHHHHH
Confidence 95310 011111 1110 02468888999999 5554 4457999999987 5667776544 2
Q ss_pred -----Cce---EEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 284 -----YEI---TGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 284 -----~~v---~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+.| ..+.||. |...+++||..+..-++-..+
T Consensus 330 d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 330 DVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hhhhccceeeeEEEEecC-Ccccccccccccceeeecccc
Confidence 222 4688999 999999999998888876443
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.25 E-value=0.0017 Score=57.76 Aligned_cols=192 Identities=16% Similarity=0.125 Sum_probs=117.7
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+.+|.+.++.++.+- -..+.|..||.............+..+.+.. + ++.++.+..++ +.++|..+++- ..
T Consensus 4 gp~~d~~~g~l~~~D-~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~-----~-~g~l~v~~~~~-~~~~d~~~g~~-~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVD-IPGGRIYRVDPDTGEVEVIDLPGPNGMAFDR-----P-DGRLYVADSGG-IAVVDPDTGKV-TV 74 (246)
T ss_dssp EEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEESSSEEEEEEEC-----T-TSEEEEEETTC-EEEEETTTTEE-EE
T ss_pred ceEEECCCCEEEEEE-cCCCEEEEEECCCCeEEEEecCCCceEEEEc-----c-CCEEEEEEcCc-eEEEecCCCcE-EE
Confidence 678888666666665 6789999999875544433333344444432 2 35666666544 55669887621 22
Q ss_pred eeeee-cc-CCCcEEEEEECCCC-cEEEEeCC--------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE-
Q 017601 233 LHRIC-GS-VGDILYAVCSSSTG-NIAVAGAD--------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY- 300 (369)
Q Consensus 233 ~~~~~-~~-~~~~v~~v~~sp~g-~lasgs~D--------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~- 300 (369)
+.... .. .....+.+++.|+| ..++-... +.|..++.. ++.... ... -...+.++|+| +++.|+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~-~~~pNGi~~s~-dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADG-LGFPNGIAFSP-DGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEE-ESSEEEEEEET-TSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecC-cccccceEECC-cchheee
Confidence 22221 11 14678999999999 55554433 457777776 443332 333 35578999999 998765
Q ss_pred EEECCCeEEEEECcCCce-------eEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 301 VQGVDYEVFCGQWRESSK-------VFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 301 s~s~D~~i~vwd~~~~~~-------~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+-+..+.|..+|+..... ...+.+.. ...++..-.+|.+.++....+.|.+++.. |+
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc
Confidence 566788999999964221 11222211 12455555689998888889999999987 54
No 287
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.1e-05 Score=74.41 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=137.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecC-CCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDT-SGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-|++.|.-+.-+-. .++.+++-+|++..|.-.. ...++-. ....|... +.+++.+- +...+.+.
T Consensus 7 mhrd~i~hv~~tka-----~fiiqASlDGh~KFWkKs~isGvEfVK---hFraHL~~-----I~sl~~S~-dg~L~~Sv- 71 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-----KFIIQASLDGHKKFWKKSRISGVEFVK---HFRAHLGV-----ILSLAVSY-DGWLFRSV- 71 (558)
T ss_pred cccceeeeEeeehh-----heEEeeecchhhhhcCCCCccceeehh---hhHHHHHH-----HHhhhccc-cceeEeec-
Confidence 48889988776543 5777888888999887553 1111111 11112111 22466665 34455554
Q ss_pred cc-cceEEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE--cCCeEEEEeCCcccCCceeeeeeccCCCc
Q 017601 169 SF-SKSIDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT--EGCQLTIWDLRMKENGGCLHRICGSVGDI 243 (369)
Q Consensus 169 s~-d~~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s--~d~~v~iwD~~~~~~~~~~~~~~~~~~~~ 243 (369)
+. |+.+++||+.. .+.-+++..-|..+.++.. + .|.-.++|++ +++.+.++|-+... .+...+..-+..+
T Consensus 72 ~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s-k--Gd~~s~IAVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sP 146 (558)
T KOG0882|consen 72 EDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS-K--GDKISLIAVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSP 146 (558)
T ss_pred cCcccceeEEEeeccchhhhcccccCCCceEEecC-C--CCeeeeEEeecccCCCcEEECCcCCc--CccceecccccCc
Confidence 45 99999999753 2222344445666666653 1 1123466665 58899999988652 2233333222689
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCC------cee---------eeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRR------WSA---------LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~------~~~---------~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
|.++.++|-+ .+.+....|.|.-|.... ... +..+... +...+++.|+| ++..+.+-+.|..
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~-Kt~pts~Efsp-~g~qistl~~Drk 224 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA-KTEPTSFEFSP-DGAQISTLNPDRK 224 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc-ccCccceEEcc-ccCcccccCcccE
Confidence 9999999999 889998899999998762 111 1122344 56789999999 9999999999999
Q ss_pred EEEEECcCCceeEEE
Q 017601 308 VFCGQWRESSKVFAF 322 (369)
Q Consensus 308 i~vwd~~~~~~~~~~ 322 (369)
|++++.+++++++.+
T Consensus 225 VR~F~~KtGklvqei 239 (558)
T KOG0882|consen 225 VRGFVFKTGKLVQEI 239 (558)
T ss_pred EEEEEeccchhhhhh
Confidence 999999987555544
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.22 E-value=0.00019 Score=62.39 Aligned_cols=197 Identities=14% Similarity=-0.000 Sum_probs=119.2
Q ss_pred EEEECCC----CceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcc
Q 017601 153 GLCFSPS----QWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~----~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~ 227 (369)
++.|-|. ....+|.+ +..+...+|... +.........+...++.+.... .....++-++.|.++++.++.-+
T Consensus 72 g~~F~p~s~~~kc~~la~g-G~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~c--d~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADG-GASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYC--DLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEec-cccceeeeecccCcccceeeecccccchhhhhhhc--ccccceeeccCCcceeEEEEecC
Confidence 5667663 33467776 788999999765 2222211112222222222111 01235666788999999998765
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-ceee-e-eccccccCceEEEEEcCCCCCEEEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-WSAL-S-RWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~-~-~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.....++.- .-.++++++++++ ++++-+....|-.|.+.. ++.+ . ..... .+.=.+..||. ....+|++.
T Consensus 149 s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~-~~~~FAv~~ 222 (344)
T KOG4532|consen 149 SNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSE-NDLQFAVVF 222 (344)
T ss_pred cccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeecc-CcceEEEEe
Confidence 322322211 1348899999999 999999999999998876 3332 2 22233 45567889999 888999999
Q ss_pred CCCeEEEEECcCCc-eeEEE---EcCCCeeeeeE---cCC--CCEEEEEeCCCcEEEEECCCCcc
Q 017601 304 VDYEVFCGQWRESS-KVFAF---RGDSNWLGFSK---CSN--RDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 304 ~D~~i~vwd~~~~~-~~~~~---~g~~~~~~~~~---~~d--~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.||++.|||++.-. ++... +.|.+ ..+.. ++- -++|+-.-.=+.+.+-|+++++.
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hn-Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHN-GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCC-CceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999998732 22211 22221 22222 221 23455444557788888888764
No 289
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=0.00059 Score=66.77 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC---------cEEEEeCCCcee
Q 017601 205 NGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR---------TVTIYDPRRWSA 274 (369)
Q Consensus 205 ~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~---------~v~vwD~~~~~~ 274 (369)
||...|+.+-+.|.++|-.-... ..++ .+.. +-.+....|+++| .||+++.|. .|..|.. -|..
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND--~~Pv-v~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i 300 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSEND--PEPV-VVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHI 300 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCC--CCCe-EEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhh
Confidence 56678888888898888643322 1333 2333 3678888999999 898887654 3444432 2666
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
+.+++-. ...|++++|-. .|-.++- ..|+.|.+-++++
T Consensus 301 ~gtlkvp-g~~It~lsWEg-~gLriA~-AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 301 VGTLKVP-GSCITGLSWEG-TGLRIAI-AVDSFIYFANIRP 338 (1189)
T ss_pred eEEEecC-CceeeeeEEcC-CceEEEE-EecceEEEEeecc
Confidence 7777777 78899999987 5555544 4799999988876
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.3e-06 Score=86.38 Aligned_cols=191 Identities=15% Similarity=0.071 Sum_probs=122.3
Q ss_pred CccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEec
Q 017601 90 PHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARS 169 (369)
Q Consensus 90 ~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s 169 (369)
.|...-++++|+-+. ..|+.+...|.|.++++..+.. ...++.|...+ +-+.-+.++..++.++ +
T Consensus 1099 d~~~~fTc~afs~~~----~hL~vG~~~Geik~~nv~sG~~-----e~s~ncH~Sav-----T~vePs~dgs~~Ltss-s 1163 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGT----NHLAVGSHAGEIKIFNVSSGSM-----EESVNCHQSAV-----TLVEPSVDGSTQLTSS-S 1163 (1516)
T ss_pred ccccceeeEEeecCC----ceEEeeeccceEEEEEccCccc-----ccccccccccc-----ccccccCCcceeeeec-c
Confidence 577788999998763 6888899999999999987632 12233343322 2344455555566655 4
Q ss_pred ccc-eEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee-eeccC--CCcEE
Q 017601 170 FSK-SIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR-ICGSV--GDILY 245 (369)
Q Consensus 170 ~d~-~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-~~~~~--~~~v~ 245 (369)
+.. -..+|+........+.+.....+.|.... ..-+.+.....+.|||++|+ ..+.+ +.... ...-+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~------q~r~~gt~~d~a~~YDvqT~---~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDEDKAVKFSNSL------QFRALGTEADDALLYDVQTC---SPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred ccCchHHHhccccccCccccccccceeehhhhH------HHHHhcccccceEEEecccC---cHHHHhcCcchhhhhhcc
Confidence 443 67899986544444444444566665531 12222333457889999998 55555 22210 23347
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
+..|||+. ++. .|| .+||+|..+.++.|..- ... ..=.|+| .|..++-.+ -|||+++-+
T Consensus 1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~f-t~~-~~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQF-TDY-GGGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhh-eec-ccccccC-CCceEEeec-----hhhhhHHHH
Confidence 88999999 553 355 57999999888887754 322 2336999 898888766 589999843
No 291
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.002 Score=58.39 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=126.6
Q ss_pred CCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc--cceEEEEeCCcc---eEEEEe---
Q 017601 117 YGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF--SKSIDVYDQDIH---LRTLRT--- 188 (369)
Q Consensus 117 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~~---~~~~~~--- 188 (369)
..-|++|++++...++....... .... .+=++|+|++..+.++. .. ++.|.-|.++.. ...+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~-----~~~n--ptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~G~Lt~ln~~~~ 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA-----ELGN--PTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDDGRLTFLNRQTL 86 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc-----ccCC--CceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCCCeEEEeecccc
Confidence 45799999986533332211111 1111 12389999654444444 33 677888866532 221111
Q ss_pred eeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCc-ccCCceeeeeeccCCCc----------EEEEEECCCC-cE
Q 017601 189 LWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRM-KENGGCLHRICGSVGDI----------LYAVCSSSTG-NI 255 (369)
Q Consensus 189 ~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~-~~~~~~~~~~~~~~~~~----------v~~v~~sp~g-~l 255 (369)
...+. .++. .++++..++++. ..|.|.++-++. +.-...++.+.+. +. +-+..|.|++ +|
T Consensus 87 ~g~~p--~yvs---vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~--g~~p~~rQ~~~h~H~a~~tP~~~~l 159 (346)
T COG2706 87 PGSPP--CYVS---VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHT--GSGPHERQESPHVHSANFTPDGRYL 159 (346)
T ss_pred CCCCC--eEEE---ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecC--CCCCCccccCCccceeeeCCCCCEE
Confidence 11111 2322 234555666655 368999999875 3222333444443 33 7788999999 66
Q ss_pred EEEe--CCCcEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCC--c--eeEEE---
Q 017601 256 AVAG--ADRTVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRES--S--KVFAF--- 322 (369)
Q Consensus 256 asgs--~D~~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~--~--~~~~~--- 322 (369)
++.. .| .|.+|++..+.....-. .. ...-..+.|+| ++++.+... .+++|.+|..+.. + .++.+
T Consensus 160 ~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~-G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 160 VVPDLGTD-RIFLYDLDDGKLTPADPAEVKP-GAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEeecCCc-eEEEEEcccCccccccccccCC-CCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 5543 34 48899988655432111 22 35578999999 999987765 5999999999873 1 22222
Q ss_pred ----EcCCCeeeeeEcCCCCEEEEEeCC-CcEEEEECCC
Q 017601 323 ----RGDSNWLGFSKCSNRDVLGGWSDS-GSIFVADVVA 356 (369)
Q Consensus 323 ----~g~~~~~~~~~~~d~~~l~sgs~d-g~I~iWd~~~ 356 (369)
.|......+...+||++|.....- ..|-++.+..
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 233322234446699998877653 4666665543
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.13 E-value=0.0022 Score=59.68 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCcEEEEEcCCeEEEEeCCcccC--Cceeeeeecc------CCCcEEEEEECCCC-cEEEEe----------CCCcEEEE
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKEN--GGCLHRICGS------VGDILYAVCSSSTG-NIAVAG----------ADRTVTIY 267 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~--~~~~~~~~~~------~~~~v~~v~~sp~g-~lasgs----------~D~~v~vw 267 (369)
++..+-++..|+|.+-|+...+. ...+..+... ..+.+.-++++|++ ++.+.. ..+.|.++
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 34555555559999999654310 0222222110 01233449999999 665532 12579999
Q ss_pred eCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEE
Q 017601 268 DPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 268 D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~ 322 (369)
|.++++.+..+.- ...+.+++|+| |++ +|++.. .++.|.+.|..+++.+..+
T Consensus 285 D~~t~kvi~~i~v--G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 285 DAKTGKRLRKIEL--GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ECCCCeEEEEEeC--CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999988773 34789999999 999 777665 6789999999999888887
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=3.2e-06 Score=83.77 Aligned_cols=186 Identities=18% Similarity=0.139 Sum_probs=119.4
Q ss_pred CCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc--CCeEEEEeCCc
Q 017601 149 GSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE--GCQLTIWDLRM 226 (369)
Q Consensus 149 ~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~--d~~v~iwD~~~ 226 (369)
.++++++|+- +...+++| +..|.|++|++......-....|...++.+... .|+..+++.+. .--..+|++..
T Consensus 1102 ~~fTc~afs~-~~~hL~vG-~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs---~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1102 ALFTCIAFSG-GTNHLAVG-SHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPS---VDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cceeeEEeec-CCceEEee-eccceEEEEEccCcccccccccccccccccccc---CCcceeeeeccccCchHHHhcccc
Confidence 4688999998 66788998 899999999875433222233355566666532 35666666443 33578999875
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecc----ccccCceEEEEEcCCCCCEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWV----HCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~----~h~~~~v~~l~~sp~d~~~l~s 301 (369)
- ....+.+... .++.|+... .-+.|..-..+.|||+.++.++.++. +. ...=+...||| +..+++
T Consensus 1177 ~--~~~~Hsf~ed-----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~-~y~~n~a~FsP-~D~LIl- 1246 (1516)
T KOG1832|consen 1177 T--GGPRHSFDED-----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS-SYSNNLAHFSP-CDTLIL- 1246 (1516)
T ss_pred c--cCcccccccc-----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh-hhhccccccCC-CcceEe-
Confidence 3 3666666543 477888766 33445555668899999998887743 22 34457889999 777765
Q ss_pred EECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 302 QGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|| .+||++..+.++.|.--+...+-..-|.|..++.-| -|||++|-+
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHH
Confidence 455 579999877776663222001111234566555544 378888765
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.08 E-value=0.0022 Score=67.54 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=129.0
Q ss_pred cceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEeccc
Q 017601 92 RSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFS 171 (369)
Q Consensus 92 ~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d 171 (369)
.+.|.++.|-++. ..+..+-..|.|.+...+.... .....+ .+.-+.|+.+.+|||+++ ++|.. ..+
T Consensus 75 ~~~ivs~~yl~d~----~~l~~~~~~Gdi~~~~~~~~~~---~~~~E~----VG~vd~GI~a~~WSPD~E-lla~v-T~~ 141 (928)
T PF04762_consen 75 NDKIVSFQYLADS----ESLCIALASGDIILVREDPDPD---EDEIEI----VGSVDSGILAASWSPDEE-LLALV-TGE 141 (928)
T ss_pred CCcEEEEEeccCC----CcEEEEECCceEEEEEccCCCC---CceeEE----EEEEcCcEEEEEECCCcC-EEEEE-eCC
Confidence 4788899988873 4566666778888874432111 101111 122245788999999655 55555 345
Q ss_pred ceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCC-------c-e---eeeeecc
Q 017601 172 KSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENG-------G-C---LHRICGS 239 (369)
Q Consensus 172 ~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~-------~-~---~~~~~~~ 239 (369)
+++-+...+ ..+...... +. .......+++|.+.+=.=|--+.++.. . + ...+..
T Consensus 142 ~~l~~mt~~fd~i~E~~l~--~~----------~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~- 208 (928)
T PF04762_consen 142 GNLLLMTRDFDPISEVPLD--SD----------DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW- 208 (928)
T ss_pred CEEEEEeccceEEEEeecC--cc----------ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc-
Confidence 666665432 111111000 00 011235566654433222221111100 0 0 011111
Q ss_pred CCCcEEEEEECCCC-cEEEEeC------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC---CCeEE
Q 017601 240 VGDILYAVCSSSTG-NIAVAGA------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV---DYEVF 309 (369)
Q Consensus 240 ~~~~v~~v~~sp~g-~lasgs~------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~---D~~i~ 309 (369)
...-..|+|-.|| ++|+.+. -+.++||+ |.|....+-..- .+--.+++|.| .|+++|+.-. ...|.
T Consensus 209 -dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v-~gLe~~l~WrP-sG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 209 -DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPV-DGLEGALSWRP-SGNLIASSQRLPDRHDVV 284 (928)
T ss_pred -CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccC-CCccCCccCCC-CCCEEEEEEEcCCCcEEE
Confidence 2345678999999 8887764 26899999 447665554433 44456789999 9999998765 34566
Q ss_pred EEECcCCceeEEE--Ec---CCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCC
Q 017601 310 CGQWRESSKVFAF--RG---DSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 310 vwd~~~~~~~~~~--~g---~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~ 357 (369)
+|. ++|-....| +- ......+...+|++.||..-.|. |++|-..+-
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 665 344333333 21 11223455577999999988776 999987653
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=0.00014 Score=72.87 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=119.4
Q ss_pred CceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeec
Q 017601 160 QWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICG 238 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~ 238 (369)
++..+..| +....+-.+|..... ........+ .+..+.. .+..+.++...|+|.+-|.++- +.++++..
T Consensus 146 ~~~~~i~G-g~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~-----Nnr~lf~G~t~G~V~LrD~~s~---~~iht~~a 215 (1118)
T KOG1275|consen 146 GPSTLIMG-GLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRY-----NNRNLFCGDTRGTVFLRDPNSF---ETIHTFDA 215 (1118)
T ss_pred CCcceeec-chhhheeeeecccceeeeeeeccCC-ceEEEEe-----cCcEEEeecccceEEeecCCcC---ceeeeeec
Confidence 33456666 666677777765321 111111121 2444442 1234444556899999999988 88899987
Q ss_pred cCCCcEEEEEECCCC-cEEEEeC---------CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 239 SVGDILYAVCSSSTG-NIAVAGA---------DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 239 ~~~~~v~~v~~sp~g-~lasgs~---------D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
| .+.|..+ +-.| .|+++|. |.-|+|||+|..+.+..+.-+ .++ .-+.|.|.-...++.+|..|..
T Consensus 216 H-s~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 216 H-SGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred c-ccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cCc-hhhhhcccccceEEEEecccce
Confidence 7 6777655 4556 7776654 677999999998888877766 444 6688999667789999999999
Q ss_pred EEEE---CcCC-ceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEE
Q 017601 309 FCGQ---WRES-SKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 309 ~vwd---~~~~-~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.+-| +.+. ..++.+.... ....+..+++++.+|-|..+|.|.+|.
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999 4332 1222222222 124455577999999999999999996
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0013 Score=63.24 Aligned_cols=188 Identities=9% Similarity=-0.060 Sum_probs=104.3
Q ss_pred EEEECCCCceeEEEEecc--cceEEEEeCCc-ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-c--CCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSF--SKSIDVYDQDI-HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-E--GCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~--d~~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~--d~~v~iwD~~~ 226 (369)
.-.|+|++...++..... +..|.++|... ..+.+.. .+....... ++||+..++... . +..|.++|+.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~---~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSD---VSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeE---ECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 578999766545544122 34577778753 2233322 111111112 346776666543 2 35788889876
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CC--cEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DR--TVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~--~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
+ . ...+... ........|+||| .|+-.+. .+ .|.++|+.+++..... .+. . ...||| ||+.|+-
T Consensus 267 g---~-~~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~---~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 267 K---T-LTQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N---NSSVST-YKNYIVY 335 (419)
T ss_pred C---c-EEEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c---CceECC-CCCEEEE
Confidence 6 3 3334332 1223345799999 5555443 33 5777788876653322 222 1 248999 9998877
Q ss_pred EECC---------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCC-C--cEEEEECCCC
Q 017601 302 QGVD---------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDS-G--SIFVADVVAK 357 (369)
Q Consensus 302 ~s~D---------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~d-g--~I~iWd~~~~ 357 (369)
.+.. ..|.+.|+.+++......+.. -.....+|||+.|+-.+.+ + .+.+.++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV-NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC-cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 6654 367888887775433332211 1223457799876654433 3 3556676544
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.04 E-value=0.0015 Score=59.00 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=120.9
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-----cCCeEEEEeCCcc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-----EGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-----~d~~v~iwD~~~~ 227 (369)
+++.+|..+..++.++---.-..+||....... .....+..-.|.-+..|++|+..|.+.= ..|.|-|||.+.+
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 588899888888888655556778886432211 1222333334555556677776666642 2478999999833
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------------------CCcEEEEeCCCceeeeecc----ccccC
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------------------DRTVTIYDPRRWSALSRWV----HCSKY 284 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------------------D~~v~vwD~~~~~~~~~~~----~h~~~ 284 (369)
...+..+..+ +-.-..+.+.||| .|+++.. +-++...|.++++.+.++. -| +-
T Consensus 88 --~~ri~E~~s~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~l 163 (305)
T PF07433_consen 88 --YRRIGEFPSH-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QL 163 (305)
T ss_pred --cEEEeEecCC-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-cc
Confidence 1556666644 3445567789999 6665421 3356667778888877633 35 78
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeE-----EEEECcCCceeEEEEcC-------CCe-eeeeEcCCCCEEE-EEeCCCcEE
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEV-----FCGQWRESSKVFAFRGD-------SNW-LGFSKCSNRDVLG-GWSDSGSIF 350 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i-----~vwd~~~~~~~~~~~g~-------~~~-~~~~~~~d~~~l~-sgs~dg~I~ 350 (369)
.|..+++.+ +|..+...-..+.- .+.-.+.++.+..+... .++ .++....++.+++ |+=.-+.+.
T Consensus 164 SiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 164 SIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred ceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 899999999 88776654433321 11112222222222211 011 3444455777665 444678999
Q ss_pred EEECCCCcc
Q 017601 351 VADVVAKEN 359 (369)
Q Consensus 351 iWd~~~~~~ 359 (369)
+||..+++-
T Consensus 243 ~~d~~tg~~ 251 (305)
T PF07433_consen 243 VWDAATGRL 251 (305)
T ss_pred EEECCCCCE
Confidence 999998863
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0006 Score=65.59 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=90.7
Q ss_pred CCCCCc-EEEEEc---CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEE-EEeCC--CcEEEEeCCCceee
Q 017601 204 VNGGPN-MLAVTE---GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIA-VAGAD--RTVTIYDPRRWSAL 275 (369)
Q Consensus 204 ~~~~~~-lla~s~---d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~la-sgs~D--~~v~vwD~~~~~~~ 275 (369)
+||+.. ++..+. +..|.++|+.++ +...-.... +...+..|+||| .++ +.+.+ ..|.++|+..++ .
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~ 269 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIASSQ--GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-L 269 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEecCC--CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-E
Confidence 466765 443443 357999999877 332222222 556678899999 554 44333 467788887765 3
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEECC-C--eEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC-----
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGVD-Y--EVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS----- 346 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-~--~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d----- 346 (369)
..+..+ ........|+| ||+.|+-.+.. + .|.+.|+.+++..+.. .+.. ....++||+.|+-.+..
T Consensus 270 ~~LT~~-~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 270 TQITNY-PGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN---NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEcccC-CCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc---CceECCCCCEEEEEEcCCCccc
Confidence 445444 33345568999 99987776642 2 6888888877664433 2332 23457899987765543
Q ss_pred ----CcEEEEECCCCcc
Q 017601 347 ----GSIFVADVVAKEN 359 (369)
Q Consensus 347 ----g~I~iWd~~~~~~ 359 (369)
..|++.|+.+++.
T Consensus 345 ~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCCcEEEEEECCCCCe
Confidence 3678888887753
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=0.0013 Score=62.62 Aligned_cols=130 Identities=13% Similarity=-0.000 Sum_probs=82.0
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCC----ceeeeeccccccCceEEEE
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRR----WSALSRWVHCSKYEITGLS 290 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~----~~~~~~~~~h~~~~v~~l~ 290 (369)
+.|+.++..+ -++..+... ..|...+|-|.| .+++-+. ..++.+|-+.+ .+.+.++. +...+.|.
T Consensus 427 ~eIfrireKd--Ipve~velk--e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vf 499 (698)
T KOG2314|consen 427 LEIFRIREKD--IPVEVVELK--ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVF 499 (698)
T ss_pred EEEEEeeccC--CCceeeecc--hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEE
Confidence 4444444331 344444444 788999999999 6555432 45788898773 23344444 34578999
Q ss_pred EcCCCCCEEEEE---ECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCCC------cEEEEECCC
Q 017601 291 FSSIDSNYIYVQ---GVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDSG------SIFVADVVA 356 (369)
Q Consensus 291 ~sp~d~~~l~s~---s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~dg------~I~iWd~~~ 356 (369)
|+| .|++++.+ |.-|.+.++|.....+..+- ..|.....+..-|.|+++++++... --++|++..
T Consensus 500 wsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 500 WSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 999 99998775 45688999998753332222 2233223445577999999998654 446777653
No 300
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.01 E-value=0.0015 Score=61.20 Aligned_cols=150 Identities=13% Similarity=-0.033 Sum_probs=100.0
Q ss_pred ECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-eEEEEeCCcccCCcee
Q 017601 156 FSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-QLTIWDLRMKENGGCL 233 (369)
Q Consensus 156 ~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-~v~iwD~~~~~~~~~~ 233 (369)
|++.++.++|.. | -|..-|.+.- ... ++ ..++..+.+.+.. .+...++-+..|| .+-|||.+++ .+
T Consensus 327 fa~~~Gd~ia~V-S-RGkaFi~~~~~~~~--iq-v~~~~~VrY~r~~---~~~e~~vigt~dgD~l~iyd~~~~----e~ 394 (668)
T COG4946 327 FAVVNGDYIALV-S-RGKAFIMRPWDGYS--IQ-VGKKGGVRYRRIQ---VDPEGDVIGTNDGDKLGIYDKDGG----EV 394 (668)
T ss_pred hccCCCcEEEEE-e-cCcEEEECCCCCee--EE-cCCCCceEEEEEc---cCCcceEEeccCCceEEEEecCCc----eE
Confidence 455455555554 2 2444444321 111 11 1233345555422 2344666677777 8999999987 44
Q ss_pred eeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCC----eE
Q 017601 234 HRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----EV 308 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----~i 308 (369)
+++... -+.|.++..+|+| .++.+.....+-+.|+.++.+...=+.. .+-|+...|+| +++.+|-+=-++ .|
T Consensus 395 kr~e~~-lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~-nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 395 KRIEKD-LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHP-NSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred EEeeCC-ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcC-CceeEEEecCcceeeeeE
Confidence 555544 5899999999999 7888888888899999998765544444 57799999999 999998765554 68
Q ss_pred EEEECcCCceeE
Q 017601 309 FCGQWRESSKVF 320 (369)
Q Consensus 309 ~vwd~~~~~~~~ 320 (369)
+++|+..++...
T Consensus 472 klydm~~~Kiy~ 483 (668)
T COG4946 472 KLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeEEE
Confidence 999998865443
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.97 E-value=2.7e-05 Score=67.16 Aligned_cols=146 Identities=13% Similarity=-0.002 Sum_probs=84.5
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCc------EEEEeCCCceeeeeccc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRT------VTIYDPRRWSALSRWVH 280 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~------v~vwD~~~~~~~~~~~~ 280 (369)
+..++.+..||.+.+++.+.-. ....++... ...-.+.++-..+.++..+.-|+ .+.|+++..+.+..-..
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~--~~~~~i~~~-~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDL--ALMSRIPSI-HSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred CCceEecCCCceEEEEechHHH--hhhhhcccc-cccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 5678888899999999987421 111111110 01111222223332233333333 44555543322222222
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCce-eEEEEcCCCe-eeeeE-cCCCCEEEEEeCCCcEEEEECCC
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSK-VFAFRGDSNW-LGFSK-CSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~-~~~~~g~~~~-~~~~~-~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
. .+.|++++-+|...+.++.|+.||.+-+||++.... .-.+..|..- ..+.. ..+++.|+++++||.+..||..+
T Consensus 178 ~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 178 A-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred c-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 2 345999999996666777888899999999998532 2223455410 11222 23889999999999999999874
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.95 E-value=0.002 Score=56.69 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=94.0
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeec-cccc--c
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRW-VHCS--K 283 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~-~~h~--~ 283 (369)
++.+++++.++.|..||..++ +.+-++... ..+.......++.++++..|+.+..+|.++++.+-+. .... .
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG---~~~W~~~~~--~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTG---KVLWRFDLP--GPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTS---EEEEEEECS--SCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CCEEEEEcCCCEEEEEECCCC---CEEEEeecc--ccccceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 567888889999999999998 666555543 2211111223446777778889999999999888763 3220 0
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe--eee--------eEcCCCCEEEEEeCCCcEEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW--LGF--------SKCSNRDVLGGWSDSGSIFVAD 353 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~--~~~--------~~~~d~~~l~sgs~dg~I~iWd 353 (369)
.......... ++..++.+..++.|..+|.++++.+-.+.....- ..+ .....+..++.++.++.+.-+|
T Consensus 111 ~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEE
T ss_pred ccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEE
Confidence 1122233333 4678888888999999999999988887653311 000 1111333777788888644449
Q ss_pred CCCCc
Q 017601 354 VVAKE 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
+++++
T Consensus 190 ~~tg~ 194 (238)
T PF13360_consen 190 LATGE 194 (238)
T ss_dssp TTTTE
T ss_pred CCCCC
Confidence 99886
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.90 E-value=0.002 Score=56.76 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=95.5
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCC--CCCCeeEEEECCCC-----ceeEEEEe
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGV--GEGSWSGLCFSPSQ-----WSMAAVAR 168 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p~~-----~~~~a~~~ 168 (369)
+.++|||| ..+||..++.|+|+++|+.... .+.+.|..... -...++++.|-+.. ...+.+-
T Consensus 47 Rkl~WSpD----~tlLa~a~S~G~i~vfdl~g~~------lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi- 115 (282)
T PF15492_consen 47 RKLAWSPD----CTLLAYAESTGTIRVFDLMGSE------LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI- 115 (282)
T ss_pred eEEEECCC----CcEEEEEcCCCeEEEEecccce------eEEcCcccccCCccccceeeeEeeccccccccceeEEEE-
Confidence 57899998 4799999999999999987431 12222221111 12346677775533 2234444
Q ss_pred cccceEEEEeC--C--cceEEEEee---e-CCcceeeeccCCCCCCCCcEEEEE-c---C-------CeEEEEeCCcc--
Q 017601 169 SFSKSIDVYDQ--D--IHLRTLRTL---W-YPSSLNFVQNLSPVNGGPNMLAVT-E---G-------CQLTIWDLRMK-- 227 (369)
Q Consensus 169 s~d~~i~lwd~--~--~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~lla~s-~---d-------~~v~iwD~~~~-- 227 (369)
.++|.++=|-+ + +.-+..+.+ . .+..++.+.+. +..+.|+.+| + + .-+.-|-+-.+
T Consensus 116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~---p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH---PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP 192 (282)
T ss_pred eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc---CCCCEEEEeccCCCCCccccccccCceEEEEcCCCC
Confidence 57777766642 1 111111111 1 23344433332 2223344332 1 1 12444543211
Q ss_pred ---------cCC-------cee-----eee--eccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc
Q 017601 228 ---------ENG-------GCL-----HRI--CGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC 281 (369)
Q Consensus 228 ---------~~~-------~~~-----~~~--~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h 281 (369)
+.. ... ..+ +......|+.++.|||| .||+.+.+|.|.+|++.+-.....|.-+
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 000 000 001 11114779999999999 9999999999999999988777777654
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0011 Score=65.85 Aligned_cols=143 Identities=9% Similarity=0.036 Sum_probs=97.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
+++++- ..++.+ ..+|.|++++.....++... +... +-+|.++++||+||+|.|-.+-+. ..
T Consensus 44 ~~av~~---~~~~~G-tH~g~v~~~~~~~~~~~~~~--~s~~---------~~~Gey~asCS~DGkv~I~sl~~~---~~ 105 (846)
T KOG2066|consen 44 CCAVHD---KFFALG-THRGAVYLTTCQGNPKTNFD--HSSS---------ILEGEYVASCSDDGKVVIGSLFTD---DE 105 (846)
T ss_pred HHHhhc---ceeeec-cccceEEEEecCCccccccc--cccc---------ccCCceEEEecCCCcEEEeeccCC---cc
Confidence 455543 577877 88899999986533222211 1111 235789999999999999998887 45
Q ss_pred eeeeeccCCCcEEEEEECCC-----C-cEEEEeCCCcEEEEeCC---CceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 233 LHRICGSVGDILYAVCSSST-----G-NIAVAGADRTVTIYDPR---RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~-----g-~lasgs~D~~v~vwD~~---~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
...+.-+ .++.+++++|+ . ++++|+.-| +.++.-+ +...+ .+..- .++|.++.|.- +++|=++
T Consensus 106 ~~~~df~--rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~W~g---~lIAWan 177 (846)
T KOG2066|consen 106 ITQYDFK--RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIKWRG---NLIAWAN 177 (846)
T ss_pred ceeEecC--CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEEecC---cEEEEec
Confidence 5555555 88999999999 2 899999988 7776522 11112 23344 67899999965 7777665
Q ss_pred CCCeEEEEECcCCceeEEE
Q 017601 304 VDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 304 ~D~~i~vwd~~~~~~~~~~ 322 (369)
.+ -|+++|..+.+.+..+
T Consensus 178 d~-Gv~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 178 DD-GVKVYDTPTRQRLTNI 195 (846)
T ss_pred CC-CcEEEeccccceeecc
Confidence 44 5899999886655554
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.0045 Score=61.38 Aligned_cols=248 Identities=12% Similarity=0.056 Sum_probs=139.7
Q ss_pred cccCCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCC------
Q 017601 86 LNRCPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPS------ 159 (369)
Q Consensus 86 ~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~------ 159 (369)
+.-+.|+..-+++.|+|.+ ++|=++. .-|.+-|.-+- +.+. .+..| ...++.+.|.|.
T Consensus 9 lpG~l~~sN~~A~Dw~~~G-----LiAygsh-slV~VVDs~s~-q~iq----sie~h-----~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSG-----LIAYGSH-SLVSVVDSRSL-QLIQ----SIELH-----QSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred CCCCCCcccccccccCccc-----eEEEecC-ceEEEEehhhh-hhhh----ccccC-----ccceeEEEeccCCCchhc
Confidence 3345666777889999874 5544333 24555454321 1110 11111 122445666552
Q ss_pred -----CceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCC-CcEEEEEcCCeEEEEeCCcccCCcee
Q 017601 160 -----QWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGG-PNMLAVTEGCQLTIWDLRMKENGGCL 233 (369)
Q Consensus 160 -----~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~lla~s~d~~v~iwD~~~~~~~~~~ 233 (369)
..-++|++ .-.|.|.+||............+...+..+.|.+.-++. ..|++.....++.+|+..+| +.+
T Consensus 73 lS~~~~~lliAsa-D~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASA-DISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---EKF 148 (1062)
T ss_pred cCccccceeEEec-cccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---cee
Confidence 22356666 677999999975333222222222222333333333334 45677778899999999998 444
Q ss_pred eeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeC-CC------ceeeeeccccccC--------------------
Q 017601 234 HRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDP-RR------WSALSRWVHCSKY-------------------- 284 (369)
Q Consensus 234 ~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~-~~------~~~~~~~~~h~~~-------------------- 284 (369)
-..... .....|+.+.|.. .+..-+..|.|-+-+. .. ++..+.-..| .+
T Consensus 149 Wk~~ys-~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~-Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 149 WKYDYS-HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH-SDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eccccC-CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc-cchhhhhhhhhccccccCCCcc
Confidence 333322 2566778999887 5544455565555442 21 2222211122 11
Q ss_pred -----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC---eeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 285 -----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN---WLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 285 -----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~---~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
....++|+| .-+.++-.-.-+.+.++|++-..++....-..+ +..+..++..+.|+++=.||.+.+|-.+.
T Consensus 227 a~fity~a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhHHHHHHhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 022467889 555555556788999999988777766643332 22333355778899999999999997655
No 306
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.80 E-value=0.0012 Score=50.10 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=65.9
Q ss_pred ECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeee
Q 017601 156 FSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 156 ~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~ 235 (369)
|..++...|+++ |.|..|++|+.+..+..+.....+..+..+. .++|+.+..+|+|-+||-.. .+-+
T Consensus 10 ~d~dg~~eLlvG-s~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~-------~~~F~Y~l~NGTVGvY~~~~-----RlWR 76 (111)
T PF14783_consen 10 FDGDGENELLVG-SDDFEIRVFKGDEIVAEITETDKVTSLCSLG-------GGRFAYALANGTVGVYDRSQ-----RLWR 76 (111)
T ss_pred cCCCCcceEEEe-cCCcEEEEEeCCcEEEEEecccceEEEEEcC-------CCEEEEEecCCEEEEEeCcc-----eeee
Confidence 444455678888 9999999999988777776554444444443 36899999999999998643 3334
Q ss_pred eeccCCCcEEEEEE---CCCC--cEEEEeCCCcEE
Q 017601 236 ICGSVGDILYAVCS---SSTG--NIAVAGADRTVT 265 (369)
Q Consensus 236 ~~~~~~~~v~~v~~---sp~g--~lasgs~D~~v~ 265 (369)
++.. ..+.++++ +-|| .|++|=.+|.|-
T Consensus 77 iKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443 44666543 3445 899998888774
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.79 E-value=0.023 Score=50.45 Aligned_cols=201 Identities=13% Similarity=0.012 Sum_probs=112.1
Q ss_pred EEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEE
Q 017601 97 SIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDV 176 (369)
Q Consensus 97 ~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~l 176 (369)
++.|.+.. ..+..+--..+.|+.|+..+... ..+... +-.++++...++. ++++ .. +.+.+
T Consensus 4 gp~~d~~~---g~l~~~D~~~~~i~~~~~~~~~~----~~~~~~---------~~~G~~~~~~~g~-l~v~-~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRD---GRLYWVDIPGGRIYRVDPDTGEV----EVIDLP---------GPNGMAFDRPDGR-LYVA-DS-GGIAV 64 (246)
T ss_dssp EEEEETTT---TEEEEEETTTTEEEEEETTTTEE----EEEESS---------SEEEEEEECTTSE-EEEE-ET-TCEEE
T ss_pred ceEEECCC---CEEEEEEcCCCEEEEEECCCCeE----EEEecC---------CCceEEEEccCCE-EEEE-Ec-CceEE
Confidence 45676632 23444433467788887764411 011111 1347888843444 4444 23 45666
Q ss_pred EeCCc-ceEEEEeee-CCcceeeeccCCCCCCCCcEEEEEcC--------CeEEEEeCCcccCCceeeeeeccCCCcEEE
Q 017601 177 YDQDI-HLRTLRTLW-YPSSLNFVQNLSPVNGGPNMLAVTEG--------CQLTIWDLRMKENGGCLHRICGSVGDILYA 246 (369)
Q Consensus 177 wd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~lla~s~d--------~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~ 246 (369)
+|... .+..+.... ............+++++..+++.... +.|..++.. + +.......- ...+.
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~~~~~~~~~--~~pNG 138 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---KVTVVADGL--GFPNG 138 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---EEEEEEEEE--SSEEE
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---eEEEEecCc--ccccc
Confidence 68653 333333331 11122222223344566655554422 457777766 3 332223333 66789
Q ss_pred EEECCCC-cE-EEEeCCCcEEEEeCCC-ce------eeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 247 VCSSSTG-NI-AVAGADRTVTIYDPRR-WS------ALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 247 v~~sp~g-~l-asgs~D~~v~vwD~~~-~~------~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
++|+|++ .| ++-+..+.|..||+.. +. .+..+..- ....-.+++.+ +|++.++.-..+.|.++|.+ ++
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GK 215 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SC
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-cc
Confidence 9999999 44 5667788899999853 21 12222322 23478899999 99998888888999999987 77
Q ss_pred eeEEEEcC
Q 017601 318 KVFAFRGD 325 (369)
Q Consensus 318 ~~~~~~g~ 325 (369)
.+..+.-.
T Consensus 216 ~~~~i~~p 223 (246)
T PF08450_consen 216 LLREIELP 223 (246)
T ss_dssp EEEEEE-S
T ss_pred EEEEEcCC
Confidence 77777543
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.74 E-value=0.0069 Score=57.32 Aligned_cols=247 Identities=12% Similarity=0.033 Sum_probs=135.0
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCC---------------cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEEC
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYG---------------HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFS 157 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (369)
..|.-+.|||.+ +.|.+...-+ ++.+||...+.- ...+...+. ...+|.-+.|+
T Consensus 72 ~~V~~~~fSP~~----kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~i---v~sf~~~~q----~~~~Wp~~k~s 140 (561)
T COG5354 72 PDVKYLDFSPNE----KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMI---VFSFNGISQ----PYLGWPVLKFS 140 (561)
T ss_pred CCceecccCccc----ceeeeeccCCccChhhccCCccccCceeEEeccCcee---EeeccccCC----cccccceeeee
Confidence 457888888874 5666653332 488999875521 111221111 12367668998
Q ss_pred CCCceeEEEEecccceEEEEeCCcceE--EEEeeeCCcceeeeccCCCCCCCCcEEEE-----EcCCeEEEEeCCcccCC
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDIHLR--TLRTLWYPSSLNFVQNLSPVNGGPNMLAV-----TEGCQLTIWDLRMKENG 230 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~lla~-----s~d~~v~iwD~~~~~~~ 230 (369)
-++. ++|- =....+.|+++..... .+..+ .+..+.-+...|-++ +..|+.- +.+++++||.+..+
T Consensus 141 ~~D~-y~AR--vv~~sl~i~e~t~n~~~~p~~~l-r~~gi~dFsisP~~n-~~~la~~tPEk~~kpa~~~i~sIp~~--- 212 (561)
T COG5354 141 IDDK-YVAR--VVGSSLYIHEITDNIEEHPFKNL-RPVGILDFSISPEGN-HDELAYWTPEKLNKPAMVRILSIPKN--- 212 (561)
T ss_pred ecch-hhhh--hccCeEEEEecCCccccCchhhc-cccceeeEEecCCCC-CceEEEEccccCCCCcEEEEEEccCC---
Confidence 8544 3332 2335688998532211 11111 122233333333222 2233432 35789999998755
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEE-Ee----------CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCE
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAV-AG----------ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNY 298 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~las-gs----------~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~ 298 (369)
..+.+-..- ...=..+.|++.| .|.. .- ....+.|++++... +.....- .++|....|+| .++.
T Consensus 213 s~l~tk~lf-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~-~~pVhdf~W~p-~S~~ 288 (561)
T COG5354 213 SVLVTKNLF-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDL-KDPVHDFTWEP-LSSR 288 (561)
T ss_pred CeeeeeeeE-eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccc-cccceeeeecc-cCCc
Confidence 333321110 1122357788888 3221 11 02457788877332 2222244 78999999999 7776
Q ss_pred EEEE--ECCCeEEEEECcCCceeEEE-EcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCcchhhhcc
Q 017601 299 IYVQ--GVDYEVFCGQWRESSKVFAF-RGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKENEISALK 365 (369)
Q Consensus 299 l~s~--s~D~~i~vwd~~~~~~~~~~-~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~~~~~~l~ 365 (369)
++.. -++..+.++|++.+ +.+.+ .+.. ..+..++.+++++.++-| |.|-+||....-..+.++.
T Consensus 289 F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~r--NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~ 358 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN-LRFYFPEQKR--NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN 358 (561)
T ss_pred eeEEecccccceeecccccc-eEEecCCccc--ccccccCcccEEEEecCCccccceEEeccCCceEEEEEee
Confidence 5554 47889999999886 33333 2333 334445667777766554 6788888776654443443
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0039 Score=62.51 Aligned_cols=192 Identities=19% Similarity=0.250 Sum_probs=115.5
Q ss_pred EECCCCceeEEEEecccceEEEEeCCcce-EEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-----eEEEEeCCccc
Q 017601 155 CFSPSQWSMAAVARSFSKSIDVYDQDIHL-RTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC-----QLTIWDLRMKE 228 (369)
Q Consensus 155 ~~~p~~~~~~a~~~s~d~~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~-----~v~iwD~~~~~ 228 (369)
+|++ +...++.+ +.+|.|.+++..-.. +.++...+. .+.++... ++-..|+++++|. .++|||+...+
T Consensus 30 c~~s-~~~~vvig-t~~G~V~~Ln~s~~~~~~fqa~~~s-iv~~L~~~---~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSS-STGSVVIG-TADGRVVILNSSFQLIRGFQAYEQS-IVQFLYIL---NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcC-CCceEEEe-eccccEEEecccceeeehheecchh-hhhHhhcc---cCceEEEEEeecCCCCceEEEEecccccC
Confidence 5666 45678888 899999888765322 444333222 24444421 2224677788764 59999997542
Q ss_pred C---Ccee--eeeec-c---CCCcEEEEEECCCC-cEEEEeCCCcEEEEe--CCC--ceeeeeccccccCceEEEEEcCC
Q 017601 229 N---GGCL--HRICG-S---VGDILYAVCSSSTG-NIAVAGADRTVTIYD--PRR--WSALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 229 ~---~~~~--~~~~~-~---~~~~v~~v~~sp~g-~lasgs~D~~v~vwD--~~~--~~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
. ..++ +++.. . ...++.+++.+.+- .+|+|=.+|.|..+- +-. +... .+....+++||++.|..
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~-~~~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ-DYSHRGKEPITGLALRS- 181 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce-eeeccCCCCceeeEEec-
Confidence 2 2344 12221 1 14678889999888 999999999999884 322 2211 22211258899999998
Q ss_pred CCCEEEEEECCCeEEEEECcCCc-eeEEEEcCCCeeeeeE--cCCCC--EEEEEeCCCcEEEEECCCCc
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS-KVFAFRGDSNWLGFSK--CSNRD--VLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~-~~~~~~g~~~~~~~~~--~~d~~--~l~sgs~dg~I~iWd~~~~~ 358 (369)
++..++-...-..|.++.+.... ....+..|. .+... ..++. +++++ +..+++|+....+
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRG 246 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEec--CceEEEEcCCCcc
Confidence 88875555566789999987533 234354444 23322 12333 44433 3568888876443
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.71 E-value=0.019 Score=59.85 Aligned_cols=191 Identities=17% Similarity=0.227 Sum_probs=109.2
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccc
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSK 172 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~ 172 (369)
++|.++.|--+ ..-+..++..|.|.+-|..+..-++ .+.-+.|+.+.+|+|+.+ .++.. ....
T Consensus 69 ~~i~s~~fl~d----~~~i~v~~~~G~iilvd~et~~~ei-----------vg~vd~GI~aaswS~Dee-~l~li-T~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD----TNSICVITALGDIILVDPETLELEI-----------VGNVDNGISAASWSPDEE-LLALI-TGRQ 131 (1265)
T ss_pred cceEEEEEecc----cceEEEEecCCcEEEEcccccceee-----------eeeccCceEEEeecCCCc-EEEEE-eCCc
Confidence 68889998765 3566666778888887655331111 122245788899999554 55554 3445
Q ss_pred eEEEEeCC------cce-------------------EEEEee----------------------eCCcceeeeccCCCCC
Q 017601 173 SIDVYDQD------IHL-------------------RTLRTL----------------------WYPSSLNFVQNLSPVN 205 (369)
Q Consensus 173 ~i~lwd~~------~~~-------------------~~~~~~----------------------~~~~~v~~~~~~~~~~ 205 (369)
++-+.+-+ +.. ..++.. .+...+.|-
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR------- 204 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR------- 204 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-------
Confidence 55443210 110 111100 011112221
Q ss_pred CCCcEEEEE-----cC-CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEE---eCCCcEEEEeCCCcee-
Q 017601 206 GGPNMLAVT-----EG-CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVA---GADRTVTIYDPRRWSA- 274 (369)
Q Consensus 206 ~~~~lla~s-----~d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasg---s~D~~v~vwD~~~~~~- 274 (369)
.++.++|++ .+ ..|++||-. + .+........+.=.+++|-|.| ++|+- ..|..|.+|. |+|-.
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~h 278 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRH 278 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEeccc-c----hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccc
Confidence 234455542 24 789999976 3 1222111112334578999999 77774 3456788887 44433
Q ss_pred ---eeeccccccCceEEEEEcCCCCCEEEE---EECCCeEEEEECcC
Q 017601 275 ---LSRWVHCSKYEITGLSFSSIDSNYIYV---QGVDYEVFCGQWRE 315 (369)
Q Consensus 275 ---~~~~~~h~~~~v~~l~~sp~d~~~l~s---~s~D~~i~vwd~~~ 315 (369)
.-.+... ..+|..++|+. ++..|+. ......|++|-+.+
T Consensus 279 g~f~l~~p~d-e~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 279 GEFVLPFPLD-EKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccCCccc-ccchheeeecC-CCCceeeeecccccceEEEEEecC
Confidence 3334444 45599999999 9999887 44445599999877
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00014 Score=66.41 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=79.7
Q ss_pred EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-cCCCCEEEE
Q 017601 264 VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-CSNRDVLGG 342 (369)
Q Consensus 264 v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-~~d~~~l~s 342 (369)
|++.+..+.+...-+.+| ...|.+++|||.+..++..++.++.|+|.|+++..+...+..+....+... ..+..+|++
T Consensus 175 v~~l~~~~fkssq~lp~~-g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGE-GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhccccc-chhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 667776666666667778 889999999995555899999999999999999888888877652222222 336788999
Q ss_pred EeCCCcEEEEECCCCcchhhhccc
Q 017601 343 WSDSGSIFVADVVAKENEISALKG 366 (369)
Q Consensus 343 gs~dg~I~iWd~~~~~~~~~~l~g 366 (369)
|-..|.|+|||++..+..+..+.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhh
Confidence 999999999999988776555443
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.67 E-value=0.03 Score=53.13 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=89.7
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE--EeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV--AGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las--gs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
..+.|++++.. .+.....- .++|..++|+|.+ .+++ |-.+-++.++|++.. ....+. ...=..+-|||
T Consensus 255 snLyl~~~~e~----~i~V~~~~-~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp 325 (561)
T COG5354 255 SNLYLLRITER----SIPVEKDL-KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSP 325 (561)
T ss_pred ceEEEEeeccc----ccceeccc-cccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccC
Confidence 56888988743 22222121 4899999999999 6555 457889999999876 444443 23346688999
Q ss_pred CCCCEEEEEECCC---eEEEEECcCCc-eeEEEEcCCCeeeee-EcCCCCEEEEEe------CCCcEEEEECCCC
Q 017601 294 IDSNYIYVQGVDY---EVFCGQWRESS-KVFAFRGDSNWLGFS-KCSNRDVLGGWS------DSGSIFVADVVAK 357 (369)
Q Consensus 294 ~d~~~l~s~s~D~---~i~vwd~~~~~-~~~~~~g~~~~~~~~-~~~d~~~l~sgs------~dg~I~iWd~~~~ 357 (369)
.+++++.++-|+ .|-+||....- +...+.|-. .... .++|++++.+.. .|..|.|||+...
T Consensus 326 -~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 326 -HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred -cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 999999988774 78999987644 333666655 3332 256888876654 4688999998644
No 313
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.67 E-value=0.016 Score=55.41 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=85.8
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeecc--CC-C---cEEEEEECC---CCcEEEEeCCCcEEEEeCCCceeeeec
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VG-D---ILYAVCSSS---TGNIAVAGADRTVTIYDPRRWSALSRW 278 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~-~---~v~~v~~sp---~g~lasgs~D~~v~vwD~~~~~~~~~~ 278 (369)
+.++.++.++.+..+|..++ +.+-..... .. . ....+.-+| ++.++.++.++.+..+|+.+++.+-+.
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G---~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQG---QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccCC---hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 46666778899999998887 333222110 00 0 011111222 346777788999999999998765433
Q ss_pred cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEECCC
Q 017601 279 VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 279 ~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.- .....+. . ++..++.++.|+.+..+|..+++.+=....-. ......+ .+..|+.++.||.|++.|..+
T Consensus 283 ~~---~~~~~~~--~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 283 EY---GSVNDFA--V-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPVLYNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cC---CCccCcE--E-ECCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCEEECCEEEEEeCCCEEEEEECCC
Confidence 21 1111222 2 45678888899999999999886543322100 0011112 456778899999999999998
Q ss_pred Ccc
Q 017601 357 KEN 359 (369)
Q Consensus 357 ~~~ 359 (369)
|+.
T Consensus 355 G~~ 357 (394)
T PRK11138 355 GRF 357 (394)
T ss_pred CCE
Confidence 863
No 314
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.66 E-value=2.2e-05 Score=75.60 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=119.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccc-cCCCCCCCCCCeeEEEECCCCceeEEEEe---
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSV-LPQDCGVGEGSWSGLCFSPSQWSMAAVAR--- 168 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~a~~~--- 168 (369)
-.+.|+++.-+. +.-++|.+..+|+|-+-.+..... . ...+ +++... -++++|++.+.+.+|.+=
T Consensus 57 qy~kcva~~y~~--d~cIlavG~atG~I~l~s~r~~hd---S-s~E~tp~~ar~-----Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 57 QYVKCVASFYGN--DRCILAVGSATGNISLLSVRHPHD---S-SAEVTPGYARP-----CTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred CCceeehhhcCC--chhhhhhccccCceEEeecCCccc---c-cceeccccccc-----ccccccccccHHHHHhhhhhh
Confidence 445677765543 246888888899998866542211 1 1111 222111 237999998777777651
Q ss_pred cccceEEEEeCCcceE------EEEe--eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC
Q 017601 169 SFSKSIDVYDQDIHLR------TLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV 240 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~------~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~ 240 (369)
-.|..+.|||...... .+.. ......+.+.. +...++++.....++++|+|... .....+.
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr------d~klvlaGm~sr~~~ifdlRqs~--~~~~svn--- 194 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR------DTKLVLAGMTSRSVHIFDLRQSL--DSVSSVN--- 194 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCcccccccc------Ccchhhcccccchhhhhhhhhhh--hhhhhhh---
Confidence 1245799999864311 1111 11222222322 34577788888899999999541 1122222
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEe-CCCc-eeeeecccccc----CceEEEEEcCCCCCEEEEEECCC-eEEEE
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYD-PRRW-SALSRWVHCSK----YEITGLSFSSIDSNYIYVQGVDY-EVFCG 311 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD-~~~~-~~~~~~~~h~~----~~v~~l~~sp~d~~~l~s~s~D~-~i~vw 311 (369)
+..+..+...|-. ++++ ..|+.|.+|| .++- .++..+... + ..+..++|+|.....+++.+.|. +|+++
T Consensus 195 Tk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~-~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRN-ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred hhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhC-CCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 2455667778844 5555 4499999999 6653 334443322 2 34899999997777788888775 89999
Q ss_pred ECcC
Q 017601 312 QWRE 315 (369)
Q Consensus 312 d~~~ 315 (369)
|+..
T Consensus 273 di~~ 276 (783)
T KOG1008|consen 273 DICV 276 (783)
T ss_pred cccc
Confidence 9864
No 315
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00017 Score=42.54 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=34.2
Q ss_pred ceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 272 WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
+++...+..| ...|.++.|++ ++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~-~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGH-TGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEec-CCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 3556677788 88999999999 889999999999999996
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.61 E-value=0.03 Score=53.56 Aligned_cols=136 Identities=17% Similarity=0.109 Sum_probs=87.6
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCce
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI 286 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v 286 (369)
++.++.++.++.+..+|.+++ +.+-+.... . ...+.. .++.++.++.++.+..+|..+++.+-+...-.....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG---~~~W~~~~~--~-~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSG---QIVWKREYG--S-VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCC---CEEEeecCC--C-ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc
Confidence 457777888999999999988 444322211 1 111222 133777888999999999999876543221101112
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcC--CCCEEEEEeCCCcEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCS--NRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~--d~~~l~sgs~dg~I~iWd~ 354 (369)
.+... .+.+|+.++.|+.+.+.|..+++.+..++-.. ..+...| .+..|+.++.||.|+.++.
T Consensus 329 ~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 329 TAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--SGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 22222 24678889999999999999998887775432 1222223 4557888899999998764
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.59 E-value=0.003 Score=64.44 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=72.1
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeecc--CCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeee-eccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGS--VGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALS-RWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~ 285 (369)
..+.|-.++.+..||.|... .+.+..-.+. ......|++-+.+|+||+|+.+|.||+|| +.+.... .+.+- ..+
T Consensus 544 ~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~l-G~p 620 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGL-GDP 620 (794)
T ss_pred ceEEEECCCceEEeccCCCC-CceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCC-CCC
Confidence 44555667789999999753 1333211111 14678888888888999999999999999 4444443 44555 899
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
|.+|..+. ||++++..+ +..+.++|.
T Consensus 621 I~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 621 IIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 99999999 999987765 556667775
No 318
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.57 E-value=0.025 Score=53.28 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=100.1
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-cEEEEeCCCceeeeeccccccC
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-TVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
|..++.+| -|++.|.+.-.+ -.++ +.+. +.|.-..+.-++ -++.|..|| .+-|||.++++.. .+... -+
T Consensus 332 Gd~ia~VS-RGkaFi~~~~~~---~~iq-v~~~--~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~-lg 402 (668)
T COG4946 332 GDYIALVS-RGKAFIMRPWDG---YSIQ-VGKK--GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKD-LG 402 (668)
T ss_pred CcEEEEEe-cCcEEEECCCCC---eeEE-cCCC--CceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCC-cc
Confidence 44444454 577888776554 3332 3333 568777787777 888999999 8999999877644 44444 57
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSG----SIFVADVVAKE 358 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg----~I~iWd~~~~~ 358 (369)
.|.++..+| +|++++.+-.-.++.+.|+.++.....-+... -...+...+++++||=+--+| .|+++|+.+++
T Consensus 403 ~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 403 NIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 899999999 99999888877899999999875533322221 113445567888888776665 78899998865
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.48 E-value=4.1e-05 Score=73.79 Aligned_cols=197 Identities=17% Similarity=0.161 Sum_probs=110.6
Q ss_pred EEEECCC-CceeEEEEecccceEEEEeCCc-ceEEEE-eeeCCcceeeeccCCCCCCCCcEEEEE----cCCeEEEEeCC
Q 017601 153 GLCFSPS-QWSMAAVARSFSKSIDVYDQDI-HLRTLR-TLWYPSSLNFVQNLSPVNGGPNMLAVT----EGCQLTIWDLR 225 (369)
Q Consensus 153 ~l~~~p~-~~~~~a~~~s~d~~i~lwd~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~~lla~s----~d~~v~iwD~~ 225 (369)
++++.-. +..++++| ..+|.|.+-.... +-.... +..+...++...+.+. |.+.|+++- .|..+.|||+.
T Consensus 61 cva~~y~~d~cIlavG-~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVG-SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred eehhhcCCchhhhhhc-cccCceEEeecCCcccccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceecc
Confidence 4554433 33667777 8889998876532 111000 1111122222332222 233444442 26789999998
Q ss_pred cccCC-ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 226 MKENG-GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
++-.. +.-..+........+++||-.+. ++.+|...+.++++|+|... ....+. +..+..+...|..++++++.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceecc
Confidence 76210 11111222124566789999777 89999999999999998421 122222 34567778888778998887
Q ss_pred ECCCeEEEEE-CcCC-ceeEEEEcCC-----CeeeeeEcC-CCCEEEEEeC-CCcEEEEECCC
Q 017601 303 GVDYEVFCGQ-WRES-SKVFAFRGDS-----NWLGFSKCS-NRDVLGGWSD-SGSIFVADVVA 356 (369)
Q Consensus 303 s~D~~i~vwd-~~~~-~~~~~~~g~~-----~~~~~~~~~-d~~~l~sgs~-dg~I~iWd~~~ 356 (369)
+ |+.|-+|| .++- .++..+.... +...+..|| ...++++.+. .++|+.+|+..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6 99999999 3331 1112111111 123455577 2334555554 58999998764
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.44 E-value=0.054 Score=56.63 Aligned_cols=150 Identities=13% Similarity=0.170 Sum_probs=80.6
Q ss_pred EEEECCCCceeEEEEe---ccc-ceEEEEeCCcceEEEEeee--CCcceeeeccCCCCCCCCcEEEEE---cCCeEEEEe
Q 017601 153 GLCFSPSQWSMAAVAR---SFS-KSIDVYDQDIHLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVT---EGCQLTIWD 223 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~---s~d-~~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s---~d~~v~iwD 223 (369)
.+.|.- ++.++|+.. ..+ +.|++||.+.......... -...+.|- |.|..+++.. +|+.|.+|.
T Consensus 200 ~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWk------Psgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 200 SISWRG-DGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWK------PSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred eEEEcc-CCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeec------CCCCeEeeeeecCCCCcEEEEe
Confidence 378877 445677631 234 8999999763332221110 11223332 3355555543 466899997
Q ss_pred CCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE---EeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCC
Q 017601 224 LRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV---AGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSN 297 (369)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las---gs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~ 297 (369)
-..-..+.-.-.+... ...+..++|+.++ .||+ ......|++|-+.+ |-....+.-. +... +.|+|....
T Consensus 273 rNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 273 RNGLRHGEFVLPFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-QKAL--LMWDPVTEK 348 (1265)
T ss_pred cCCccccccccCCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc-cccc--ccccCCCce
Confidence 4322111222222222 2458999999999 7776 44555599999887 3333333322 1112 777775444
Q ss_pred EEEEEECCCeEEEEEC
Q 017601 298 YIYVQGVDYEVFCGQW 313 (369)
Q Consensus 298 ~l~s~s~D~~i~vwd~ 313 (369)
.|..-..+|...+.|+
T Consensus 349 ~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRDF 364 (1265)
T ss_pred eEEEEecCCcEEEEEE
Confidence 4554445665555554
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0083 Score=59.78 Aligned_cols=188 Identities=11% Similarity=0.072 Sum_probs=113.2
Q ss_pred ccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecc
Q 017601 91 HRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSF 170 (369)
Q Consensus 91 H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~ 170 (369)
..+.+.+.+++. ..++-+.-.|.+++++.+... ...+...+ . -..+..+++| |.
T Consensus 38 ~~D~is~~av~~------~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~------------~---~~~Gey~asC-S~ 91 (846)
T KOG2066|consen 38 QNDAISCCAVHD------KFFALGTHRGAVYLTTCQGNP----KTNFDHSS------------S---ILEGEYVASC-SD 91 (846)
T ss_pred hhhHHHHHHhhc------ceeeeccccceEEEEecCCcc----cccccccc------------c---ccCCceEEEe-cC
Confidence 457778888864 477778888999998776331 11111100 0 2245688888 99
Q ss_pred cceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE
Q 017601 171 SKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 171 d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~ 248 (369)
||+|.|.... ....++........+.+.+.... ....++++++.-| +.++.-+--.+...+ .+... .++|.+++
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~-~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~-eG~I~~i~ 167 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSR-QQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEG-EGPIHSIK 167 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhh-hhhhheeecCcce-EEEehhhhhcCccce-eeecC-ccceEEEE
Confidence 9999887543 22222222222233333332111 1356899988888 878764322111222 12222 58999999
Q ss_pred ECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce------EEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 249 SSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI------TGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v------~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
|. | ++|=++.+| |+|||+.+.+.+..++.. ...+ ..+.|.+ +.+ | .-|.-.+|+|..++.
T Consensus 168 W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p-~~~~R~e~fpphl~W~~-~~~-L-VIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 168 WR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPP-SQSVRPELFPPHLHWQD-EDR-L-VIGWGDSVKICSIKK 234 (846)
T ss_pred ec--CcEEEEecCCC-cEEEeccccceeeccCCC-CCCCCcccCCCceEecC-CCe-E-EEecCCeEEEEEEec
Confidence 95 6 777777776 899999988887776644 2332 3577776 433 3 345777899998873
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.36 E-value=0.0084 Score=59.25 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCcEEEEeCCC-----ceeeeeccccccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCce------------eEEE
Q 017601 261 DRTVTIYDPRR-----WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSK------------VFAF 322 (369)
Q Consensus 261 D~~v~vwD~~~-----~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~------------~~~~ 322 (369)
++.|.+.|.++ .+.+..+. - ......+++|| ||++++.++ .+.+|.|.|+.+.+. ....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-V-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-V-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-C-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 57799999988 34444444 2 45678999999 999977765 589999999987432 1111
Q ss_pred E-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 323 R-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 323 ~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
. |-.. .......+|....|-.-|..|-.|++.+
T Consensus 372 evGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 1110 1112233677888889999999999876
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00067 Score=62.17 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=74.8
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++..+.-+- +..+-+..+ +..|..++|||.. ++..++.+++|+|.|+++...+..+..+ ..+++++|.-.+.
T Consensus 175 v~~l~~~~f---kssq~lp~~-g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGE-GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCc---chhhccccc-chhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCc
Confidence 666665544 344434444 6889999999988 7899999999999999999999888877 7899999998566
Q ss_pred CEEEEEECCCeEEEEECcCC
Q 017601 297 NYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 297 ~~l~s~s~D~~i~vwd~~~~ 316 (369)
++++.|-..|.|.|+|++..
T Consensus 249 h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ceeEEeccCceEEEEEccCC
Confidence 77888888999999999873
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.36 E-value=0.0017 Score=65.38 Aligned_cols=137 Identities=13% Similarity=0.030 Sum_probs=95.3
Q ss_pred eeEEEEecccceEEEEeCCcceEEEEee-eCCcceeeeccCCCCCCCCcEEEEEc---------CCeEEEEeCCcccCCc
Q 017601 162 SMAAVARSFSKSIDVYDQDIHLRTLRTL-WYPSSLNFVQNLSPVNGGPNMLAVTE---------GCQLTIWDLRMKENGG 231 (369)
Q Consensus 162 ~~~a~~~s~d~~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~lla~s~---------d~~v~iwD~~~~~~~~ 231 (369)
..+.+| .-.|+|.+-|.... ++.++. .|...+..+. -.|+.|++||. |.-|++||+|+- +
T Consensus 188 r~lf~G-~t~G~V~LrD~~s~-~~iht~~aHs~siSDfD-----v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---r 257 (1118)
T KOG1275|consen 188 RNLFCG-DTRGTVFLRDPNSF-ETIHTFDAHSGSISDFD-----VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM---R 257 (1118)
T ss_pred cEEEee-cccceEEeecCCcC-ceeeeeeccccceeeee-----ccCCeEEEeecccccccccccchhhhhhhhhh---h
Confidence 344444 78899999987643 222222 2444554444 35789999873 678999999988 5
Q ss_pred eeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC-cee-ee--eccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 232 CLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRR-WSA-LS--RWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~-~~~-~~--~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
.+..+.-+ ....-+.|.|.= .+++.+..|...+-|..+ ..+ .. .+... ...+.++++|+ +++.++-+-.+
T Consensus 258 al~PI~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSs-n~~alafgd~~ 333 (1118)
T KOG1275|consen 258 ALSPIQFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISS-NGDALAFGDHE 333 (1118)
T ss_pred ccCCcccc--cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecC-CCceEEEeccc
Confidence 55444444 222456788887 899999999999999443 222 22 22233 45699999999 99999999999
Q ss_pred CeEEEEE
Q 017601 306 YEVFCGQ 312 (369)
Q Consensus 306 ~~i~vwd 312 (369)
|.|.+|-
T Consensus 334 g~v~~wa 340 (1118)
T KOG1275|consen 334 GHVNLWA 340 (1118)
T ss_pred CcEeeec
Confidence 9999997
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.35 E-value=0.02 Score=56.65 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=68.1
Q ss_pred CCeEEEEeCCcccC--CceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCcee------------eeecc
Q 017601 216 GCQLTIWDLRMKEN--GGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSA------------LSRWV 279 (369)
Q Consensus 216 d~~v~iwD~~~~~~--~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~------------~~~~~ 279 (369)
+++|.+.|.++..+ .+.+..+... .....++++||| .++++..+.+|.|.|+++.+. +.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 46789999887100 0445555544 778889999999 556666799999999988543 22222
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
- ...-...+|.+ +|+...|--.|..|-.||+..
T Consensus 373 v--GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L--GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c--CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 12235678999 899888899999999999876
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.31 E-value=0.012 Score=56.78 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=56.8
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+..|.+++++| +...|+.|+.||.|.+||...+..... +..-...-+..-++|.+++.|++.|.+++||++-..
T Consensus 259 ~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 259 PSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 77899999999 999999999999999999977533222 111100123335699999999999999999987654
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.31 E-value=0.11 Score=46.13 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=94.8
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEee--eCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTL--WYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
++|++|+|+...++|+. ...+.|--++.. +.++.+... ..+..++++. ++.++.+.+ ++++.++++..
T Consensus 24 ~SGLTy~pd~~tLfaV~-d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g-------~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQ-DEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLG-------NGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp EEEEEEETTTTEEEEEE-TTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-S-------TTEEEEEETTTTEEEEEEE--
T ss_pred ccccEEcCCCCeEEEEE-CCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEEC-------CCEEEEEEcCCCcEEEEEEec
Confidence 67999999878888888 778888777765 445555432 2345666664 346666664 78899998843
Q ss_pred ccCC---ceeeeeec----cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeee--e---c---cccccCceE
Q 017601 227 KENG---GCLHRICG----SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALS--R---W---VHCSKYEIT 287 (369)
Q Consensus 227 ~~~~---~~~~~~~~----~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~--~---~---~~h~~~~v~ 287 (369)
.... ..+..+.. .....+-.++|+|.+ .|..+-+....+||.++. ...+. . + ... ...+.
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~S 174 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF-VRDLS 174 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT---SS---
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce-ecccc
Confidence 2110 11222221 113558899999988 777777777777777653 11111 1 1 123 35688
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+++++|..+.+++-......+..+| ..++.+..+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 9999997777777777888999999 555554444
No 328
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.002 Score=63.28 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=80.6
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc---------------eeeeeccccccCceEEEEEcCCCCCEEEEEECC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRW---------------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~---------------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D 305 (369)
....|++|+.+. ++|+|+.||.++|.-+.+. ..-+++.|| ...|.-+.|+. +.+.|-+...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTWNe-~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTWNE-NNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEecc-ccccccccCCC
Confidence 778999999988 9999999999999876541 112467899 99999999999 77888888899
Q ss_pred CeEEEEECcCCceeEEE---EcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 306 YEVFCGQWRESSKVFAF---RGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~---~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
|-|.+|=+-.+.-...+ +..+-..++....||..|+..-+||.|.+=.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 99999988664321111 111211233334478888888888777554443
No 329
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.27 E-value=0.027 Score=42.91 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=65.1
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
..|+++++|..|++|+-. ..+..+... ..|.+++-...++++.|-.+|+|-+|+-.. .+-..+. +..++
T Consensus 16 ~eLlvGs~D~~IRvf~~~-----e~~~Ei~e~--~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiKS--K~~~~ 84 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-----EIVAEITET--DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIKS--KNQVT 84 (111)
T ss_pred ceEEEecCCcEEEEEeCC-----cEEEEEecc--cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeecc--CCCeE
Confidence 589999999999999754 567777766 889999887777999999999999998532 2222221 44577
Q ss_pred EEEEcCCCC--C-EEEEEECCCeE
Q 017601 288 GLSFSSIDS--N-YIYVQGVDYEV 308 (369)
Q Consensus 288 ~l~~sp~d~--~-~l~s~s~D~~i 308 (369)
++.+...++ . -|++|=.+|.|
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeE
Confidence 777665332 2 47777677765
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.049 Score=54.93 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=75.0
Q ss_pred cEEEEEcCCeEEEEeCCcc-cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-eccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMK-ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h~~~~ 285 (369)
.++.|=.+|.|.++--.-- ++ .....+.+..+.+|+.++|..++ .+.-...-..|.+|.+....+.. .+..| ...
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~ 216 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GIS 216 (933)
T ss_pred EEEEEecCcEEEEEcCcchhcc-ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-Ccc
Confidence 3444446899988854311 11 22233444336899999999998 42333345679999988544444 46677 888
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE-cCC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR-GDS 326 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~-g~~ 326 (369)
..+..|++..++ ++.+ .+..+.++|.......+.|. ||.
T Consensus 217 lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 217 LNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred ceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeeeecCCCe
Confidence 999999983333 4433 35789999998877777886 776
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.21 E-value=0.0011 Score=38.81 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=30.8
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYD 268 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD 268 (369)
+++..+..+ ...|++++|++++ .+++++.|+.+++||
T Consensus 3 ~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445555544 5789999999998 999999999999996
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0012 Score=65.94 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcC
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp 293 (369)
..|.|.||- .+| .+......+ -.+.++||+|.. .|+.|=.-|.+.+|...+.+.......| ..+|..+.|||
T Consensus 39 r~GSVtIfa-dtG---EPqr~Vt~P--~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th-~a~i~~l~wS~ 111 (1416)
T KOG3617|consen 39 RGGSVTIFA-DTG---EPQRDVTYP--VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETH-PAPIQGLDWSH 111 (1416)
T ss_pred CCceEEEEe-cCC---CCCcccccc--eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCC-CCCceeEEecC
Confidence 367888884 345 333333333 557789999999 9999999999999998776655556678 99999999999
Q ss_pred CCCCEEEEEECCCeEEEEECc
Q 017601 294 IDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 294 ~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+|+.++++-.-|.+.+|-..
T Consensus 112 -~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 112 -DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -CCCeEEEcCCCceeEEEEee
Confidence 99999999999999999765
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0044 Score=57.77 Aligned_cols=190 Identities=8% Similarity=-0.051 Sum_probs=115.5
Q ss_pred CceeEEEEecccceEEEEeCCc-ceEEE-Ee-eeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCcccCCceeee
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI-HLRTL-RT-LWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRMKENGGCLHR 235 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~-~~~~~-~~-~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~~~~~~~~~~ 235 (369)
...++.++ +.|+.++.|.-.. ..-.+ .. ..|-.- +.....+.++-.+.++++ |..++++|+..- ..+..
T Consensus 19 ka~fiiqA-SlDGh~KFWkKs~isGvEfVKhFraHL~~---I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~---Dminm 91 (558)
T KOG0882|consen 19 KAKFIIQA-SLDGHKKFWKKSRISGVEFVKHFRAHLGV---ILSLAVSYDGWLFRSVEDPDHSVKVFDVENF---DMINM 91 (558)
T ss_pred hhheEEee-ecchhhhhcCCCCccceeehhhhHHHHHH---HHhhhccccceeEeeccCcccceeEEEeecc---chhhh
Confidence 34567777 9999999996432 11111 00 001111 111112234555666677 999999998765 22222
Q ss_pred eeccC-CCcEEEEEECCCC---cEEEE-eCCCcEEEEeCCCce-e-eeeccccccCceEEEEEcCCCCCEEEEEECCCeE
Q 017601 236 ICGSV-GDILYAVCSSSTG---NIAVA-GADRTVTIYDPRRWS-A-LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEV 308 (369)
Q Consensus 236 ~~~~~-~~~v~~v~~sp~g---~lasg-s~D~~v~vwD~~~~~-~-~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i 308 (369)
+...+ .+.+..+ .+|.. .||.+ -.++.+.++|-+... + ...-.-| ..+|..+.++| .+..++|.-..|-|
T Consensus 92 iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH-~sPV~~i~y~q-a~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 92 IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH-FSPVKKIRYNQ-AGDSAVSIDISGMV 168 (558)
T ss_pred cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc-cCceEEEEeec-cccceeecccccee
Confidence 22210 1222221 23332 44443 457899999977633 3 3344457 99999999999 88899898888999
Q ss_pred EEEECcC------CceeEEEEcCC----------CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 309 FCGQWRE------SSKVFAFRGDS----------NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 309 ~vwd~~~------~~~~~~~~g~~----------~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
..|.... .+....++... .-.+++.++++..+.+-+.|..|+++++++++.
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 9998873 22222222111 113445567999999999999999999999874
No 334
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0067 Score=57.99 Aligned_cols=107 Identities=11% Similarity=0.143 Sum_probs=80.6
Q ss_pred EEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC-----------CeEEEE
Q 017601 244 LYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD-----------YEVFCG 311 (369)
Q Consensus 244 v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D-----------~~i~vw 311 (369)
-+-+.|||-| +|++-..-| |.+|--.+...++.+. | ..|.-+.||| ..+||+|-|.. ..++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H--p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H--PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C--CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 4568999999 999887666 7899877777777766 4 4689999999 99999996631 478999
Q ss_pred ECcCCceeEEEEcC----CCeeeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 312 QWRESSKVFAFRGD----SNWLGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 312 d~~~~~~~~~~~g~----~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
|+++|.+.+.|..- ..|--+..+.|++++|.-.. ..|.|++...
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 99999999888641 12222233668999987776 5678887654
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.00 E-value=0.26 Score=44.74 Aligned_cols=179 Identities=17% Similarity=0.087 Sum_probs=101.7
Q ss_pred EEECCCCceeEEEEe---cccceEEEEeCCcceEEEEeee----CCcceeeeccCCCCCCCCcEEEE-------------
Q 017601 154 LCFSPSQWSMAAVAR---SFSKSIDVYDQDIHLRTLRTLW----YPSSLNFVQNLSPVNGGPNMLAV------------- 213 (369)
Q Consensus 154 l~~~p~~~~~~a~~~---s~d~~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~lla~------------- 213 (369)
-+|++++..++++-. ...+.|-|||.....+.+.... .|..+...+ |+..|+.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p------DG~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP------DGETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC------CCCEEEEEcCCCccCcccCce
Confidence 689996665555431 2247899999874333333222 345555443 45444443
Q ss_pred -----EcCCeEEEEeCCcccCCceeeeee----ccCCCcEEEEEECCCCcEEEEeC-CC-------cEEEEeCCCceeee
Q 017601 214 -----TEGCQLTIWDLRMKENGGCLHRIC----GSVGDILYAVCSSSTGNIAVAGA-DR-------TVTIYDPRRWSALS 276 (369)
Q Consensus 214 -----s~d~~v~iwD~~~~~~~~~~~~~~----~~~~~~v~~v~~sp~g~lasgs~-D~-------~v~vwD~~~~~~~~ 276 (369)
+.+..+.+-|.+++ +.+.... .+ .-.|.-++++++|.++.|.. .+ -|-+++ .++.+.
T Consensus 130 kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~-~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~ 203 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH-QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALR 203 (305)
T ss_pred ecChhhcCCceEEEecCCC---ceeeeeecCcccc-ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcce
Confidence 12334555666776 5554422 22 46788899999995555543 11 133333 333332
Q ss_pred eccc------cccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC
Q 017601 277 RWVH------CSKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG 347 (369)
Q Consensus 277 ~~~~------h~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg 347 (369)
.+.. -+...|-+|++++ ++..++..| .-+.+.+||..+++.+....-.. ..++....++ +++|.+...
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCCcc
Confidence 2221 1146799999999 888775555 56799999999998877764332 1233333344 666555433
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.90 E-value=0.22 Score=48.17 Aligned_cols=212 Identities=15% Similarity=0.117 Sum_probs=96.9
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccce
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKS 173 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~ 173 (369)
..+++.++|.+ ..++. ..+|.-.++..... ....+. . -...+|.+ + +.+|+- ....+
T Consensus 34 ~p~~ls~npng----r~v~V-~g~geY~iyt~~~~----r~k~~G-~----------g~~~vw~~-~-n~yAv~-~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNG----RFVLV-CGDGEYEIYTALAW----RNKAFG-S----------GLSFVWSS-R-NRYAVL-ESSST 90 (443)
T ss_dssp --SEEEE-TTS----SEEEE-EETTEEEEEETTTT----EEEEEE-E-----------SEEEE-T-S-SEEEEE--TTS-
T ss_pred CCeeEEECCCC----CEEEE-EcCCEEEEEEccCC----cccccC-c----------eeEEEEec-C-ccEEEE-ECCCe
Confidence 36789999974 23333 45567777652211 000111 0 12578888 3 346666 45788
Q ss_pred EEEEeCCc--ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECC
Q 017601 174 IDVYDQDI--HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSS 251 (369)
Q Consensus 174 i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp 251 (369)
|.|+..-+ ..+.+.. +..+.-+- ++.++....++.|.+||+.++ +.+.++... +|..+.|++
T Consensus 91 I~I~kn~~~~~~k~i~~---~~~~~~If-------~G~LL~~~~~~~i~~yDw~~~---~~i~~i~v~---~vk~V~Ws~ 154 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL---PFSVEKIF-------GGNLLGVKSSDFICFYDWETG---KLIRRIDVS---AVKYVIWSD 154 (443)
T ss_dssp EEEEETTEE-TT--------SS-EEEEE--------SSSEEEEETTEEEEE-TTT-----EEEEESS----E-EEEEE-T
T ss_pred EEEEEcCccccceEEcC---CcccceEE-------cCcEEEEECCCCEEEEEhhHc---ceeeEEecC---CCcEEEEEC
Confidence 99974321 1122222 22233232 145666666669999999998 888888753 489999999
Q ss_pred CC-cEEEEeCCCcEEEEeCCCc-----------eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc--
Q 017601 252 TG-NIAVAGADRTVTIYDPRRW-----------SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS-- 317 (369)
Q Consensus 252 ~g-~lasgs~D~~v~vwD~~~~-----------~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~-- 317 (369)
+| ++|..+. .++.|++.... ..+..+..- ...|.+..|-. | -++.+... .++. +-.|+
T Consensus 155 ~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~-d-~fiYtT~~--~lkY--l~~Ge~~ 226 (443)
T PF04053_consen 155 DGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVE-D-CFIYTTSN--HLKY--LVNGETG 226 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEET-T-EEEEE-TT--EEEE--EETTEEE
T ss_pred CCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEc-C-EEEEEcCC--eEEE--EEcCCcc
Confidence 99 7777764 46777774432 022222221 34577777765 4 33333322 5655 22222
Q ss_pred eeEEEEcCCCeeeee-EcCCCCEEEEEeCCCcEEEEECC
Q 017601 318 KVFAFRGDSNWLGFS-KCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~-~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+.++.-. .-+. ..+..+.++....|+.|..+.+.
T Consensus 227 ~i~~ld~~---~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 227 IIAHLDKP---LYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-SS-----EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEcCCc---eEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 12222111 1111 12344667777777777777654
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.0066 Score=60.87 Aligned_cols=181 Identities=17% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEECCCCceeEEEEecc----cceEEEE-eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE-cCCeEEEEeCCcc
Q 017601 154 LCFSPSQWSMAAVARSF----SKSIDVY-DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT-EGCQLTIWDLRMK 227 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~----d~~i~lw-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s-~d~~v~iwD~~~~ 227 (369)
.+|+|..+ ++|++ +. .|+|.|| |.+.+.+... .|..++.+.|+| ...+++.+ +-|.+.+|...+.
T Consensus 21 ~SWHPseP-lfAVA-~fS~er~GSVtIfadtGEPqr~Vt---~P~hatSLCWHp----e~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVA-SFSPERGGSVTIFADTGEPQRDVT---YPVHATSLCWHP----EEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCc-eeEEE-EecCCCCceEEEEecCCCCCcccc---cceehhhhccCh----HHHHHhhccccceeEEEecCCc
Confidence 57889655 56666 33 4789998 5554333221 222222333333 23555555 4688999987765
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee--ecccc-ccCceE--EEEEcCCCCC----
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS--RWVHC-SKYEIT--GLSFSSIDSN---- 297 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~--~~~~h-~~~~v~--~l~~sp~d~~---- 297 (369)
..++....+..+|.-+.|||+| .+.++..-|.|.+|....-..+. .+-.| +...++ +...++ ++.
T Consensus 92 ----e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~-~~Ee~~~ 166 (1416)
T KOG3617|consen 92 ----ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY-DREEKFK 166 (1416)
T ss_pred ----eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC-ChHHhhh
Confidence 2333332225899999999999 99999999999999765322221 22223 112233 334455 422
Q ss_pred --EEEEEECCCeEE-EEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 298 --YIYVQGVDYEVF-CGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 298 --~l~s~s~D~~i~-vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
..+..+.++-+- .++++.....+... | .-.++|..++.+..+|+|+.-|-.
T Consensus 167 laKaaVtgDe~alD~~fnwk~~~a~rs~~-k------sgv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 167 LAKAAVTGDESALDEPFNWKESLAERSDE-K------SGVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhhhccCchhhhcccccCccchhhcccc-c------cCCCCCcEEEEEcCCceEEEEcCC
Confidence 244555555554 66665422111110 1 113477788888899999887744
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.82 E-value=0.1 Score=50.46 Aligned_cols=135 Identities=12% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEE-eCCcccCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIW-DLRMKENGG 231 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iw-D~~~~~~~~ 231 (369)
.++++|.+ ..++++ .|+...||........ .........|+. .+.++.....++|.|+ ++. . .
T Consensus 37 ~ls~npng-r~v~V~--g~geY~iyt~~~~r~k--~~G~g~~~vw~~-------~n~yAv~~~~~~I~I~kn~~-~---~ 100 (443)
T PF04053_consen 37 SLSHNPNG-RFVLVC--GDGEYEIYTALAWRNK--AFGSGLSFVWSS-------RNRYAVLESSSTIKIYKNFK-N---E 100 (443)
T ss_dssp EEEE-TTS-SEEEEE--ETTEEEEEETTTTEEE--EEEE-SEEEE-T-------SSEEEEE-TTS-EEEEETTE-E----
T ss_pred eEEECCCC-CEEEEE--cCCEEEEEEccCCccc--ccCceeEEEEec-------CccEEEEECCCeEEEEEcCc-c---c
Confidence 69999954 455555 5788888874221111 111223334443 3567777778899996 443 2 2
Q ss_pred eeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 232 CLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 232 ~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
....+... ..+..+-. | +|+..+.+ .|.+||..+++.+.++... .|..|.||+ ++++++-.+.| ++.+
T Consensus 101 ~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~-~g~~val~t~~-~i~i 169 (443)
T PF04053_consen 101 VVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSD-DGELVALVTKD-SIYI 169 (443)
T ss_dssp TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-T-TSSEEEEE-S--SEEE
T ss_pred cceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEEC-CCCEEEEEeCC-eEEE
Confidence 22334433 33444422 7 66666654 8999999999999998854 489999999 99999888755 5666
Q ss_pred EECc
Q 017601 311 GQWR 314 (369)
Q Consensus 311 wd~~ 314 (369)
++.+
T Consensus 170 l~~~ 173 (443)
T PF04053_consen 170 LKYN 173 (443)
T ss_dssp EEE-
T ss_pred EEec
Confidence 6543
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.52 Score=44.90 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=114.4
Q ss_pred eEEEECCCCceeEEEEecccceEEEEeCCcceEEEEee----eCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCc
Q 017601 152 SGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTL----WYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRM 226 (369)
Q Consensus 152 ~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~ 226 (369)
.++...|.+....+.- .....+...+.. ....-... ..+..+.. .+++..+. ....++.|.+.|..+
T Consensus 34 ~~v~~~~~g~~~~v~~-~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v------~~~~~~vyv~~~~~~~v~vid~~~ 105 (381)
T COG3391 34 GGVAVNPDGTQVYVAN-SGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAV------NPAGNKVYVTTGDSNTVSVIDTAT 105 (381)
T ss_pred ceeEEcCccCEEEEEe-ecCceeeecccc-cceeeeeccCCCccccceee------CCCCCeEEEecCCCCeEEEEcCcc
Confidence 3688888765555544 333345555443 11111111 11222222 23344344 444578999999877
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC---CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA---DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~---D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
. ...+...-. .....++++|++ .+..+.. ++++.+.|..+.+.+.+...- ..+ ..++++| ++..++..
T Consensus 106 ~---~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P-~~~a~~p-~g~~vyv~ 177 (381)
T COG3391 106 N---TVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTP-TGVAVDP-DGNKVYVT 177 (381)
T ss_pred c---ceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCc-ceEEECC-CCCeEEEE
Confidence 6 566655543 466789999999 5544443 799999999998888775433 344 8999999 99965555
Q ss_pred -ECCCeEEEEECcCCceeE-----EEEcCCCeeeeeEcCCCCEEEEEeCC---CcEEEEECCCCc
Q 017601 303 -GVDYEVFCGQWRESSKVF-----AFRGDSNWLGFSKCSNRDVLGGWSDS---GSIFVADVVAKE 358 (369)
Q Consensus 303 -s~D~~i~vwd~~~~~~~~-----~~~g~~~~~~~~~~~d~~~l~sgs~d---g~I~iWd~~~~~ 358 (369)
..+++|.+.|.......+ ...-...-..+...++|..+...-.. +.+..-|..++.
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 478899999987765543 01111111233345577755544433 588888887764
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0078 Score=58.46 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=67.4
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE-EEEEcCCCCCEEEEEECCCeEEEEECcCCcee
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT-GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~-~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~ 319 (369)
..|.-+.|+|.- ++|.+..+|.|-+.-+. ++.+-++.-| ...++ +++|.| ||+.||.|=.||+|++-|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 567888999998 99999999999998877 8888888877 66777 999999 9999999999999999999886554
Q ss_pred EE
Q 017601 320 FA 321 (369)
Q Consensus 320 ~~ 321 (369)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 44
No 341
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.47 Score=42.54 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=97.1
Q ss_pred eeEEEECCCCceeEEEEecccceEEEEe-CCcceEEEEe--eeCCcceeeeccCCCCCCCCcEEEEEc-CCeEEEEeCCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFSKSIDVYD-QDIHLRTLRT--LWYPSSLNFVQNLSPVNGGPNMLAVTE-GCQLTIWDLRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d~~i~lwd-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~lla~s~-d~~v~iwD~~~ 226 (369)
++++.|+|+...++++. ...-.|-=.+ .+..++++.. ...+..++++. ++.++.+.+ ++++.++-+..
T Consensus 88 vS~LTynp~~rtLFav~-n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-------~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 88 VSSLTYNPDTRTLFAVT-NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-------GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccceeeCCCcceEEEec-CCCceEEEEecCCceEEEecccccCChhHeEEec-------CCEEEEEehhcceEEEEEEcC
Confidence 66899999888888887 3333332223 3456666543 34677888886 456666554 67777776553
Q ss_pred ccCCceee--eee-----ccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-e--eeeccccc------cCceEEE
Q 017601 227 KENGGCLH--RIC-----GSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-A--LSRWVHCS------KYEITGL 289 (369)
Q Consensus 227 ~~~~~~~~--~~~-----~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-~--~~~~~~h~------~~~v~~l 289 (369)
........ .+. .. ....-.++|+|.. .|..+=+-+-+.||.+.... . ++....+. -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCC-CcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 31101111 111 11 3557789999999 88888888888888766432 1 11111220 1347889
Q ss_pred EEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 290 SFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 290 ~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
.|.+..+.+|+-+-.++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 999867777777777788877776553
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.57 E-value=0.082 Score=50.89 Aligned_cols=138 Identities=21% Similarity=0.200 Sum_probs=75.7
Q ss_pred EEECCCCceeEEEEecccceEEEE--eCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc-CC--eEEEEeCCccc
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVY--DQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE-GC--QLTIWDLRMKE 228 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~-d~--~v~iwD~~~~~ 228 (369)
-+|+|++..+ +.+...|+...|| |..... +..+.+...++. ...++|||..++.+++ .| .|.++|...+
T Consensus 243 P~fspDG~~l-~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~--~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~- 316 (425)
T COG0823 243 PAFSPDGSKL-AFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINT--SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS- 316 (425)
T ss_pred ccCCCCCCEE-EEEECCCCCccEEEEcCCCCc--ceecccCCcccc--CccCCCCCCEEEEEeCCCCCcceEEECCCCC-
Confidence 6899976554 4444778877777 543222 211222222222 2235688888888876 34 4666666654
Q ss_pred CCceeeeeeccCCCcEEEEEECCCC-cEEEEeC-CCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC
Q 017601 229 NGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA-DRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 229 ~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~-D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
.+.++........ .-.|+||| +|+..+. +|. |.+.|+.++.....+.. ......-.|.| +++.+...+.
T Consensus 317 ---~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~-ng~~i~~~s~ 389 (425)
T COG0823 317 ---QVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAP-NGRMIMFSSG 389 (425)
T ss_pred ---ceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCC-CCceEEEecc
Confidence 2233332211222 56799999 6665553 344 66677766554333332 23344556777 7777665443
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.012 Score=57.16 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=66.2
Q ss_pred ceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE-EEEECCCC-cEEEEeCCCcEEEEeCCC
Q 017601 194 SLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY-AVCSSSTG-NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 194 ~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~g-~lasgs~D~~v~vwD~~~ 271 (369)
.+.++.|. |.-..++.+..+|.|-+.-+. . +.+-++.-+ +..+. ++||.||| .||.|=.||+|++-|+.+
T Consensus 22 ~i~~~ewn---P~~dLiA~~t~~gelli~R~n-~---qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 22 NIKRIEWN---PKMDLIATRTEKGELLIHRLN-W---QRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ceEEEEEc---CccchhheeccCCcEEEEEec-c---ceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 34444443 233466778888888888776 3 556666533 35555 99999999 999999999999999999
Q ss_pred ceeeeeccccccCceEEEEEcC
Q 017601 272 WSALSRWVHCSKYEITGLSFSS 293 (369)
Q Consensus 272 ~~~~~~~~~h~~~~v~~l~~sp 293 (369)
+..+....--....|..+-|++
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 8887763322256788888875
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.52 E-value=0.0049 Score=52.74 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=82.4
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.+++.+.|+.|+=++++... ..+-....+. .. +.+. .-+ .+++|+.||.|.+|...-.........- .....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k-~s~rse~~~~-e~--~~v~--~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK-ESCRSERFID-EG--QRVV--TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhh-hhhhhhhhhh-cc--eeec--ccCceEEeecccceEEEecCCccchHHHhhhc-ccccc
Confidence 56677889999999887541 0111111111 01 2221 112 8999999999999987632111111111 11222
Q ss_pred EEEE-cCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE---cCCCCEEEEE--eCCCcEEEEECCCCc
Q 017601 288 GLSF-SSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK---CSNRDVLGGW--SDSGSIFVADVVAKE 358 (369)
Q Consensus 288 ~l~~-sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~---~~d~~~l~sg--s~dg~I~iWd~~~~~ 358 (369)
.+-+ .-.++.+..+++.|+.||.|++..++.+-....|. ...... ...+++|+.+ |.|..++.|+++.-+
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~-~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN-FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeecccc-CCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 2222 22255688899999999999999877665554444 111111 2256777777 888888888886543
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.56 Score=41.67 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=101.7
Q ss_pred CCccceeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 89 CPHRSEVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 89 ~~H~~~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
.+-..++..|+|.|+. ..+.+..|..+.|+..+.+. + + .....+... +..-+|++.. ++ .++...
T Consensus 18 ~g~~~e~SGLTy~pd~---~tLfaV~d~~~~i~els~~G--~-v-lr~i~l~g~------~D~EgI~y~g-~~-~~vl~~ 82 (248)
T PF06977_consen 18 PGILDELSGLTYNPDT---GTLFAVQDEPGEIYELSLDG--K-V-LRRIPLDGF------GDYEGITYLG-NG-RYVLSE 82 (248)
T ss_dssp TT--S-EEEEEEETTT---TEEEEEETTTTEEEEEETT-----E-EEEEE-SS-------SSEEEEEE-S-TT-EEEEEE
T ss_pred CCccCCccccEEcCCC---CeEEEEECCCCEEEEEcCCC--C-E-EEEEeCCCC------CCceeEEEEC-CC-EEEEEE
Confidence 3445679999999974 46777778888887666531 1 1 112222221 2244788865 33 445542
Q ss_pred cccceEEEEeCCc-----ce---EEEEeeeC---CcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeee
Q 017601 169 SFSKSIDVYDQDI-----HL---RTLRTLWY---PSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRIC 237 (369)
Q Consensus 169 s~d~~i~lwd~~~-----~~---~~~~~~~~---~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~ 237 (369)
-.++.+.+++.+. .. +.+..... ...+.-+. +++.++.|+.+-+..-..||.++.-.....+....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla---~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLA---YDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEE---EETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEE---EcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 4588888887631 11 11211111 11222233 23446688887777667777765410001111110
Q ss_pred ---cc----CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeecc--c--c----ccCceEEEEEcCCCCCEEE
Q 017601 238 ---GS----VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWV--H--C----SKYEITGLSFSSIDSNYIY 300 (369)
Q Consensus 238 ---~~----~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~--~--h----~~~~v~~l~~sp~d~~~l~ 300 (369)
.. ....+.+++|+|.. +++.....+.|-.+| ++|+++..+. . | .-..--.|+|.+ +|++.+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEE
Confidence 00 03568899999987 777788899999999 6677765443 2 1 013567899999 886654
Q ss_pred EEECCCeEEEE
Q 017601 301 VQGVDYEVFCG 311 (369)
Q Consensus 301 s~s~D~~i~vw 311 (369)
+ |.-+..++|
T Consensus 238 v-sEpNlfy~f 247 (248)
T PF06977_consen 238 V-SEPNLFYRF 247 (248)
T ss_dssp E-ETTTEEEEE
T ss_pred E-cCCceEEEe
Confidence 4 566665554
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.43 E-value=0.95 Score=43.55 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=45.9
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
+++..+++||+| .+|.-..+|.+.+....-.+.+.++.-........+.|.- +...++.- ...+.+....
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCC
Confidence 789999999999 8888889999988876544454444422234566777776 44333332 4455555433
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.92 Score=43.19 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=122.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCC--cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEE---cCCeEEEEeCCcc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQD--IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVT---EGCQLTIWDLRMK 227 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s---~d~~v~iwD~~~~ 227 (369)
++++++.+...++.. ..+..|.+.|.. ...........|..+.+- +++..+..+. .++++.+.|..+.
T Consensus 78 ~i~v~~~~~~vyv~~-~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~------~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 78 GVAVNPAGNKVYVTT-GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVD------PDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ceeeCCCCCeEEEec-CCCCeEEEEcCcccceeeEeeeccCCceEEEC------CCCCEEEEEecccCCceEEEEeCCCC
Confidence 688888777677766 667899999954 222333222244444443 3444444433 3688999998887
Q ss_pred cCCceeeeeeccCCCcEEEEEECCCC-cEEE-EeCCCcEEEEeCCCceeee-e---ccccccCceEEEEEcCCCCCEEEE
Q 017601 228 ENGGCLHRICGSVGDILYAVCSSSTG-NIAV-AGADRTVTIYDPRRWSALS-R---WVHCSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 228 ~~~~~~~~~~~~~~~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~~~~~~-~---~~~h~~~~v~~l~~sp~d~~~l~s 301 (369)
+.+...... ..+ ..++++|+| .+.. -..+++|.+.|..+..... . ...- ...-..+.++| ++..+..
T Consensus 151 ---~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~-~g~~~yV 223 (381)
T COG3391 151 ---KVTATIPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDP-DGNRVYV 223 (381)
T ss_pred ---eEEEEEecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECC-CCCEEEE
Confidence 666664432 234 889999999 4444 4589999999977655543 1 1111 23346789999 9997666
Q ss_pred EECC---CeEEEEECcCCceeEE-EEcCC-CeeeeeEcCCCCEEEEEeC-CCcEEEEECCCCc
Q 017601 302 QGVD---YEVFCGQWRESSKVFA-FRGDS-NWLGFSKCSNRDVLGGWSD-SGSIFVADVVAKE 358 (369)
Q Consensus 302 ~s~D---~~i~vwd~~~~~~~~~-~~g~~-~~~~~~~~~d~~~l~sgs~-dg~I~iWd~~~~~ 358 (369)
.-.. +.+...|..++..... +.... .-.++...++|..+..... .+.+.+-|..+..
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5443 5899999888766554 22222 1134555778888887744 4889888887754
No 348
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.66 Score=41.43 Aligned_cols=200 Identities=16% Similarity=0.146 Sum_probs=103.4
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEc------CCeEEEEeCCc
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTE------GCQLTIWDLRM 226 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~------d~~v~iwD~~~ 226 (369)
+++|+|.-+.-++.++-.-.-..+||........ +......-.|.-+..|++|+ .++.+++ -|.|-|||.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-TLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcE-EEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEeccc
Confidence 5888887777777775555556778865322111 11122233355555677765 5555554 26899999985
Q ss_pred ccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeC------------------CCcEEEEeCCCceeeee--cc--cccc
Q 017601 227 KENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGA------------------DRTVTIYDPRRWSALSR--WV--HCSK 283 (369)
Q Consensus 227 ~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~------------------D~~v~vwD~~~~~~~~~--~~--~h~~ 283 (369)
+ -+.+..+..+ +-....+.|.+|| .++.+.. .-++.+.|..++..+.+ +. -+ .
T Consensus 150 ~--fqrvgE~~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-~ 225 (366)
T COG3490 150 G--FQRVGEFSTH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-Q 225 (366)
T ss_pred c--cceecccccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh-h
Confidence 4 2455556554 4455678899999 5555432 11344445455555432 22 22 3
Q ss_pred CceEEEEEcCCCCCEEEEEECCCe-----EEEEECcCCceeEEEEcCC-------Ceee-eeEcC-CCCEEEEEeCCCcE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYE-----VFCGQWRESSKVFAFRGDS-------NWLG-FSKCS-NRDVLGGWSDSGSI 349 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~-----i~vwd~~~~~~~~~~~g~~-------~~~~-~~~~~-d~~~l~sgs~dg~I 349 (369)
-.|..++.-+ |++.+.-+-.-|- -.+--...++.+.-+.-.. ++.+ +.... ++...+|.=..+..
T Consensus 226 lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~ 304 (366)
T COG3490 226 LSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA 304 (366)
T ss_pred cceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence 4566666666 6665544332221 0011111122222221100 0111 11111 45555565566777
Q ss_pred EEEECCCCcc
Q 017601 350 FVADVVAKEN 359 (369)
Q Consensus 350 ~iWd~~~~~~ 359 (369)
.+||.++|..
T Consensus 305 vi~da~tG~v 314 (366)
T COG3490 305 VIWDAATGAV 314 (366)
T ss_pred EEEEcCCCcE
Confidence 8999999874
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.11 Score=50.09 Aligned_cols=146 Identities=18% Similarity=0.079 Sum_probs=83.5
Q ss_pred CCCCCcEEEEE--c-C-CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcE--EEEeCCCceee
Q 017601 204 VNGGPNMLAVT--E-G-CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTV--TIYDPRRWSAL 275 (369)
Q Consensus 204 ~~~~~~lla~s--~-d-~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v--~vwD~~~~~~~ 275 (369)
++++..++..+ . . ..+.++|+.++.... +..+. +.-..-+|+||| .+.+...|+.. .++|+..++ +
T Consensus 201 s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~----g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 201 SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFN----GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred CcCCCceEEEEEecCCCceEEEEeccCCccce-eeccC----CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 34555555543 2 2 369999999884322 22222 334456899999 55566667765 555777665 3
Q ss_pred eeccccccCceEEEEEcCCCCCEEEEEEC-CCe--EEEEECcCCce-eEEEEcCCCeeeeeEcCCCCEEEEEeC-CCc--
Q 017601 276 SRWVHCSKYEITGLSFSSIDSNYIYVQGV-DYE--VFCGQWRESSK-VFAFRGDSNWLGFSKCSNRDVLGGWSD-SGS-- 348 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~--i~vwd~~~~~~-~~~~~g~~~~~~~~~~~d~~~l~sgs~-dg~-- 348 (369)
..+..- .+.-+.=.|+| ||+.++-.|. .|. |.+.|+..+.. ..++.+-.. ..-..++||++|+-.+. +|.
T Consensus 275 ~~Lt~~-~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 275 PRLTNG-FGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred eecccC-CccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCCCCEEEEEeccCCcee
Confidence 334433 33344678999 9999877654 444 55556655433 222322221 12223569998886664 344
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
|.+.|..++.
T Consensus 352 i~~~~~~~~~ 361 (425)
T COG0823 352 IDKNDLASGG 361 (425)
T ss_pred eEEeccCCCC
Confidence 5666665554
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.08 Score=50.81 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=68.5
Q ss_pred EEEEcCCeEEEEeCCcccCCceeeeeecc-C--CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeee-ccccccCce
Q 017601 211 LAVTEGCQLTIWDLRMKENGGCLHRICGS-V--GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSR-WVHCSKYEI 286 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~~~~~~~~~~~-~--~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~-~~~h~~~~v 286 (369)
+.+-+|..|.=||+|-.... .+...+.+ + .....|++-..+|+||+||.+|.|++||- .+....+ +.+- ..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcc-eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc-CCce
Confidence 33456788999999955321 22222221 1 35677777777779999999999999995 5555544 5555 8899
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..|..+. ||..++..+ +.++.+-|+
T Consensus 475 ~hVdvta-dGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTA-DGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeEEeec-cCcEEEEec-ccEEEEEEE
Confidence 9999999 999987655 566666665
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.0083 Score=61.67 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=69.9
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCce
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEI 286 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v 286 (369)
..++.+++.|.+-..|++..- ++...-... +++|.+++|+.+| .++.|-.+|.|.+||+.+++.++.+..| ..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--~~~~~ne~v-~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--GPLHQNERV-QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--chhhcCCcc-CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCcc
Confidence 356677888899999987642 232222222 6899999999999 8899999999999999999998888766 5554
Q ss_pred EEEE---EcCCCCCEEEEEECCCeEEEEE
Q 017601 287 TGLS---FSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 287 ~~l~---~sp~d~~~l~s~s~D~~i~vwd 312 (369)
+++- +.. ++..++++-.-|. +|.
T Consensus 176 t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 4443 333 4456666655554 554
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.13 E-value=0.48 Score=43.90 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=77.4
Q ss_pred ceEEEEeCCc------ceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEE
Q 017601 172 KSIDVYDQDI------HLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILY 245 (369)
Q Consensus 172 ~~i~lwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~ 245 (369)
|.|.+|++.. .++.+........+..+... ++. +.++.++.|.+|++...+ +....-..+....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-----~~~-lv~~~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-----NGR-LVVAVGNKLYVYDLDNSK--TLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-----TTE-EEEEETTEEEEEEEETTS--SEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-----CCE-EEEeecCEEEEEEccCcc--cchhhheecceEEEE
Confidence 7788887755 33333333233333333321 235 455556899999998773 133322222124566
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCC-ceeeeecc-ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRR-WSALSRWV-HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~-~~~~~~~~-~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
++... + +++.|...+.+.++..+. ...+..+. ......++++.|-+ +++.++.+..++.+.++....
T Consensus 134 sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 134 SLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 66443 5 899999999998874432 22222222 11134688999986 667899999999999998863
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.013 Score=50.13 Aligned_cols=137 Identities=8% Similarity=0.030 Sum_probs=84.8
Q ss_pred cccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEE-
Q 017601 169 SFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAV- 247 (369)
Q Consensus 169 s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v- 247 (369)
+.|+.|+-+++.+.....+........ +.-+ .-+..++.++.+|.|.+|....-. .....+... ...|-++
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~----~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~-~e~i~~~I 108 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEG-QRVV----TASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSG-EESIDLGI 108 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcc-eeec----ccCceEEeecccceEEEecCCccc--hHHHhhhcc-cccceecc
Confidence 678888888876544333322211222 1110 113477788899999999876220 111111111 1333332
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCCCceeeeecccccc-CceEEEEEcCCCCCEEEEE--ECCCeEEEEECcC
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSK-YEITGLSFSSIDSNYIYVQ--GVDYEVFCGQWRE 315 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-~~v~~l~~sp~d~~~l~s~--s~D~~i~vwd~~~ 315 (369)
.--.++ +..+++.|+.|+.|++.-.+.+...-.| . .++..+..+. .++.++++ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccc-cCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 222333 7788999999999999888877777777 6 5666666666 67778887 8888899998876
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.028 Score=55.41 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee-----eecc-
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL-----SRWV- 279 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~-----~~~~- 279 (369)
+..++-+++-|.+.+|+-..++ -......+. ...+..++.|++. ++|.|+..|.|.++-+....+- ..+.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~ 121 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK 121 (726)
T ss_pred CceEEEecccceEEEEecCchh--hhcccccCc-cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence 4567778888999999866552 112222222 3566677889999 8899999999999987763321 1111
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.| +..|++++|++ |+..+++|-.-|.|.+-.+..
T Consensus 122 ~~-~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 122 SH-KCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cC-CceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 35 78999999999 999999999999988877665
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.08 E-value=0.71 Score=42.71 Aligned_cols=132 Identities=21% Similarity=0.271 Sum_probs=79.2
Q ss_pred CeEEEEeCCcc-c---CCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCce-eeeeccccccCceEEEEE
Q 017601 217 CQLTIWDLRMK-E---NGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWS-ALSRWVHCSKYEITGLSF 291 (369)
Q Consensus 217 ~~v~iwD~~~~-~---~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~~v~~l~~ 291 (369)
|.|.++++... . +.+.+...... ++|++++-- ++.|+++. .+.|.+|++...+ ....-.-+....++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999873 1 11223333344 889999654 44544444 4789999998776 433222221346666665
Q ss_pred cCCCCCEEEEEECCCeEEEEECcC-CceeEEEEc--CCCee-eeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 292 SSIDSNYIYVQGVDYEVFCGQWRE-SSKVFAFRG--DSNWL-GFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 292 sp~d~~~l~s~s~D~~i~vwd~~~-~~~~~~~~g--~~~~~-~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.. ++++.|.....+.++.++. +..+..+.. ...|. .+....+++.++.+..+|.+.++...
T Consensus 138 ~~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 138 FK---NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ET---TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cc---cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 54 6888888888888876654 222333322 22221 22224366799999999999999875
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.08 E-value=1.2 Score=42.79 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred eEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc---CCceeeeeeccCCCcEEEEE
Q 017601 173 SIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE---NGGCLHRICGSVGDILYAVC 248 (369)
Q Consensus 173 ~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~---~~~~~~~~~~~~~~~v~~v~ 248 (369)
.|+||+.. +.+..+... ...+..+.+. ++..|+.+..||++++||+.... -+..+...... ...+....
T Consensus 62 ~I~iys~sG~ll~~i~w~--~~~iv~~~wt----~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~-e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWD--SGRIVGMGWT----DDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVL-ECRIFAIW 134 (410)
T ss_pred EEEEECCCCCEeEEEEEC--CCCEEEEEEC----CCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcc-cccccccc
Confidence 59999864 555554332 2455555542 25689999999999999997331 00111111111 12233344
Q ss_pred ECCCC-cEEEEeCCCcEEEE-eCCCceeee---eccccc----c-CceEE-EEEcCCCCCEEEEEECCCeEEEEECcCCc
Q 017601 249 SSSTG-NIAVAGADRTVTIY-DPRRWSALS---RWVHCS----K-YEITG-LSFSSIDSNYIYVQGVDYEVFCGQWRESS 317 (369)
Q Consensus 249 ~sp~g-~lasgs~D~~v~vw-D~~~~~~~~---~~~~h~----~-~~v~~-l~~sp~d~~~l~s~s~D~~i~vwd~~~~~ 317 (369)
|..+| .+.++ ++.+.+. +........ ...+.. . ..+.. ..++. +....+....+..+.+-+-....
T Consensus 135 ~~~~GivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 135 FYKNGIVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred cCCCCEEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEccccc
Confidence 55567 44443 3333332 222110111 111110 0 01111 23444 45555555556666644433211
Q ss_pred eeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 318 KVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 318 ~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
. ...+..+..+..++++++||.-..+|.+.|....
T Consensus 212 ~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 212 Q---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred c---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 2233455777778899999999999999888654
No 357
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.023 Score=36.20 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.8
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCcee
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSA 274 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~ 274 (369)
..|.+++|+|.. +||.|..||.|.+|.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 679999999999 9999999999999998 5554
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=1.3 Score=40.65 Aligned_cols=192 Identities=14% Similarity=0.055 Sum_probs=101.8
Q ss_pred EEECCCCceeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCce
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~ 232 (369)
-.|.+....++.+- -..+.|.-||.. ...+.+........+.... .++.|+++. . .+.++|..++.....
T Consensus 30 P~w~~~~~~L~w~D-I~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d------~~g~Lv~~~-~-g~~~~~~~~~~~~t~ 100 (307)
T COG3386 30 PVWDPDRGALLWVD-ILGGRIHRLDPETGKKRVFPSPGGFSSGALID------AGGRLIACE-H-GVRLLDPDTGGKITL 100 (307)
T ss_pred ccCcCCCCEEEEEe-CCCCeEEEecCCcCceEEEECCCCcccceeec------CCCeEEEEc-c-ccEEEeccCCceeEE
Confidence 34566444444443 566778888764 3344433322222333332 234455443 3 366777755521111
Q ss_pred eeeee-ccCCCcEEEEEECCCCcEEEEeCC------------CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE
Q 017601 233 LHRIC-GSVGDILYAVCSSSTGNIAVAGAD------------RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 233 ~~~~~-~~~~~~v~~v~~sp~g~lasgs~D------------~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
+.... .......+.+...|+|.+..+... |.|+-+|. .+..+..+..+ -..-++|+||| |++.|
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~-~~~~NGla~Sp-Dg~tl 177 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD-LTIPNGLAFSP-DGKTL 177 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCc-EEecCceEECC-CCCEE
Confidence 11111 111245677888999944444333 23444454 46666666666 55668999999 99877
Q ss_pred EEEEC-CCeEEEEECcC------CceeEEEEcC--CCeeeeeEcCCCCEEEEEeCCC-cEEEEECCCCc
Q 017601 300 YVQGV-DYEVFCGQWRE------SSKVFAFRGD--SNWLGFSKCSNRDVLGGWSDSG-SIFVADVVAKE 358 (369)
Q Consensus 300 ~s~s~-D~~i~vwd~~~------~~~~~~~~g~--~~~~~~~~~~d~~~l~sgs~dg-~I~iWd~~~~~ 358 (369)
+.+-. .+.|.-+++.. ++..+.+... ..-.++..-.+|.+.+++-.+| .|.+|+.. ++
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 76654 57888888763 2221222111 1113333334777775554544 89999887 44
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.58 Score=41.19 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=72.4
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceE
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT 287 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~ 287 (369)
.++-++..+.+.--|.+++ +..-+-.. +..|-+-+.- -| .++.|...|.+++.+..+|+....+... ..-=.
T Consensus 25 ~v~igSHs~~~~avd~~sG---~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~ 97 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSG---NLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKV 97 (354)
T ss_pred EEEEecCCceEEEecCCCC---cEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhcc
Confidence 3344556677777777776 43322111 1344333322 24 7999999999999999999887766644 21112
Q ss_pred EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 288 GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
.....+ ++..+..++.|++.+..|.++..++...+
T Consensus 98 ~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 98 RAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 233455 88999999999999999999988877764
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.66 E-value=0.082 Score=52.26 Aligned_cols=134 Identities=15% Similarity=0.072 Sum_probs=78.1
Q ss_pred CceeEEEEecccceEEEEeCCc-ceEEEEeee--CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCcee--e
Q 017601 160 QWSMAAVARSFSKSIDVYDQDI-HLRTLRTLW--YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCL--H 234 (369)
Q Consensus 160 ~~~~~a~~~s~d~~i~lwd~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~--~ 234 (369)
....++.| +.-|.+.+|.-.. ..+.++... ....+..+. +++..+++++..|.|.++-+........+ .
T Consensus 44 t~~~l~~G-sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-----~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 44 TEEYLAMG-SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-----SVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred CCceEEEe-cccceEEEEecCchhhhcccccCccceEEEEEec-----chhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34577887 7789999998642 222222211 111222222 33445566777889999987754221222 2
Q ss_pred eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc----eeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 235 RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW----SALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 235 ~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~----~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.....+...|+|++|++++ .+.+|...|+|.+-.+... ...+.+..- .++|..+.... +.+|++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q--~~LLVSt 187 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQ--SYLLVST 187 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeeccc--ceehHhh
Confidence 2221114789999999999 9999999999987766551 112222233 46777777654 3444443
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.62 E-value=1.6 Score=39.19 Aligned_cols=226 Identities=16% Similarity=0.109 Sum_probs=119.7
Q ss_pred eEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEE-
Q 017601 109 MVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLR- 187 (369)
Q Consensus 109 ~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~- 187 (369)
..|+.+..+| +++++...... ...+... ..+.-+..-|.-+.+++.+ |+.+.++++........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~-----~~~i~~~------~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSK-----PTRILKL------SSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CEEEEEECCC-EEEEEecCCcc-----ceeEeec------ceEEEEEEecccCEEEEEc---CCccEEEEchhhcccccc
Confidence 4555556777 99998832211 0011000 0144677777555555544 59999998752221110
Q ss_pred -------------eeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccC-C-ceeeeeeccCCCcEEEEEECCC
Q 017601 188 -------------TLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKEN-G-GCLHRICGSVGDILYAVCSSST 252 (369)
Q Consensus 188 -------------~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~-~-~~~~~~~~~~~~~v~~v~~sp~ 252 (369)
.......+.++. ......+...+.++...+|.||....... . +..+.+... ..+.+++|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~~ 149 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLGN 149 (275)
T ss_pred ccccccccccccccccccCCeeEEe-eccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeCC
Confidence 111122333333 11113356777777778999998876422 2 356667766 88999999833
Q ss_pred CcEEEEeCCCcEEEEeCCCceeeeecccc-----------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeE-
Q 017601 253 GNIAVAGADRTVTIYDPRRWSALSRWVHC-----------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVF- 320 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~~~~~~~h-----------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~- 320 (369)
.++.|..+ ...+.|+.++....-+... ...++..+..+ ++.+|++ .|..-.+-|... +..+
T Consensus 150 -~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~--~~~~g~fv~~~G-~~~r~ 222 (275)
T PF00780_consen 150 -KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLC--YDNIGVFVNKNG-EPSRK 222 (275)
T ss_pred -EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEE--ecceEEEEcCCC-CcCcc
Confidence 55555544 4777899876554332211 01233334443 3455553 344444445433 2222
Q ss_pred ---EEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcchhhhcc
Q 017601 321 ---AFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKENEISALK 365 (369)
Q Consensus 321 ---~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~~~~~l~ 365 (369)
.+.... ..+.. ...+|+....++ |.||++.+++. ++.+.
T Consensus 223 ~~i~W~~~p--~~~~~--~~pyli~~~~~~-iEV~~~~~~~l-vQ~i~ 264 (275)
T PF00780_consen 223 STIQWSSAP--QSVAY--SSPYLIAFSSNS-IEVRSLETGEL-VQTIP 264 (275)
T ss_pred cEEEcCCch--hEEEE--ECCEEEEECCCE-EEEEECcCCcE-EEEEE
Confidence 111111 11111 456887776655 99999999863 45544
No 362
>PHA02713 hypothetical protein; Provisional
Probab=95.61 E-value=0.3 Score=49.01 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=49.8
Q ss_pred cEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECC------CeEEEEECcC-Ccee--EEEEcCCCeeee
Q 017601 263 TVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD------YEVFCGQWRE-SSKV--FAFRGDSNWLGF 331 (369)
Q Consensus 263 ~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D------~~i~vwd~~~-~~~~--~~~~g~~~~~~~ 331 (369)
++..||+++ |+.+..+... ......+.+ ++++.+.||.+ ..+..+|..+ .+-. ..+.... ...
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~ 506 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTG-TIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SAL 506 (557)
T ss_pred eEEEECCCCCeEeecCCCCcc-cccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccc
Confidence 577899876 4444444322 222222222 55777777754 2456788776 3322 2221111 111
Q ss_pred eE-cCCCCEEEEEeCCC--cEEEEECCCCc
Q 017601 332 SK-CSNRDVLGGWSDSG--SIFVADVVAKE 358 (369)
Q Consensus 332 ~~-~~d~~~l~sgs~dg--~I~iWd~~~~~ 358 (369)
.. ..++.+.+.|+.|+ .+..||..+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 11 22788999999888 78888887765
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.53 E-value=1.6 Score=40.38 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccC---------CCcEEEEEECCCC-cEEEEe---CCC-------cEEE
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV---------GDILYAVCSSSTG-NIAVAG---ADR-------TVTI 266 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~---------~~~v~~v~~sp~g-~lasgs---~D~-------~v~v 266 (369)
++.++-.+..|.|+--|+.... .+....+..-. .+.-.-+++++.. +|.+-. .++ .|-+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 4567768888888888876441 11222222100 0112235666654 443322 222 3777
Q ss_pred EeCCCceeeeeccccccCceEEEEEcCCCCC-EEEEEE-CCCeEEEEECcCCceeEEEEc
Q 017601 267 YDPRRWSALSRWVHCSKYEITGLSFSSIDSN-YIYVQG-VDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 267 wD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~-~l~s~s-~D~~i~vwd~~~~~~~~~~~g 324 (369)
+|+.+++.+..+.. ..++.+|..+. +.+ +|+..+ .++.+.+||..+++.++...+
T Consensus 274 ~D~~t~krv~Ri~l--~~~~~Si~Vsq-d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 274 YDLKTHKRVARIPL--EHPIDSIAVSQ-DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEEEE--EEEESEEEEES-SSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EECCCCeEEEEEeC--CCccceEEEcc-CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 79999999998883 24688999998 544 565554 578999999999999988854
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.051 Score=56.21 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred cEEEEeCCCcEEEEeCCCc-eeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-Ceeee
Q 017601 254 NIAVAGADRTVTIYDPRRW-SALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGF 331 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~ 331 (369)
.++.|+..|.|-..|++.. .+.+. ..+..++|++++|+. +|+.++.|-.+|-|.+||+.+++.++.+.-|. +-.++
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~-ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQ-NERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhc-CCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 7889999999999997753 22222 223368999999999 99999999999999999999988877775333 00122
Q ss_pred eE---cCCCCEEEEEeCCCcEEEEEC
Q 017601 332 SK---CSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 332 ~~---~~d~~~l~sgs~dg~I~iWd~ 354 (369)
.. ..++..+.++..-|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 22 235667888877776 5654
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.41 E-value=0.41 Score=49.29 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC-------C-cEEEEeCCCcEEEEeCCCce-eeeecccc---c
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST-------G-NIAVAGADRTVTIYDPRRWS-ALSRWVHC---S 282 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-------g-~lasgs~D~~v~vwD~~~~~-~~~~~~~h---~ 282 (369)
....|.-.|+..| +.+..+..+...+|..+ .|+ . ....|-.++.+..||+|-.. .+..-..| .
T Consensus 502 ~~~~ly~mDLe~G---KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred CCCceEEEecCCC---cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 4578888999988 89998886622334444 443 2 56778888999999999732 22111111 1
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-CCCeeeeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-DSNWLGFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
....++++-+. + .+||.||.+|.||+||--..+....|.| .....++....||++|++.+. ..+.+++.
T Consensus 577 ~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTE-D-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecC-C-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 34466666665 4 5789999999999999433222233333 122345555679999876654 45666665
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.19 E-value=2.1 Score=43.13 Aligned_cols=70 Identities=13% Similarity=-0.031 Sum_probs=42.0
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEE---EeCCCcee-e---eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTI---YDPRRWSA-L---SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~v---wD~~~~~~-~---~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..|.++.||||| ++|.-. ++.|.+ -....++. + ..+..-+...+.++.|.+ ++.++ .+..+....+|.+
T Consensus 448 g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 448 GPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence 679999999999 666655 466766 33233431 1 112222134468999999 87754 5455554555554
Q ss_pred c
Q 017601 314 R 314 (369)
Q Consensus 314 ~ 314 (369)
.
T Consensus 525 ~ 525 (591)
T PRK13616 525 N 525 (591)
T ss_pred e
Confidence 3
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.88 Score=43.97 Aligned_cols=139 Identities=15% Similarity=0.069 Sum_probs=84.7
Q ss_pred CCcEEE-EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cE-----EEEeCCCcEEEEeCCCc-e-ee
Q 017601 207 GPNMLA-VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NI-----AVAGADRTVTIYDPRRW-S-AL 275 (369)
Q Consensus 207 ~~~lla-~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~l-----asgs~D~~v~vwD~~~~-~-~~ 275 (369)
.+.|+. ......+.=-|+..| +.+..+..+ ..|+-+.+.|+. .+ +.|-.|+.|.=||+|-. . .+
T Consensus 345 snlil~~~~~~~~l~klDIE~G---KIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERG---KIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred cceEeeCCCCcCcceeeecccc---eeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 334443 334456777788888 888888876 668888999886 33 45677889999999852 2 22
Q ss_pred eeccccccC----ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEE
Q 017601 276 SRWVHCSKY----EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIF 350 (369)
Q Consensus 276 ~~~~~h~~~----~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~ 350 (369)
..-++| +. ...|.+-. ...+++.||.+|.||+||--..+....|.|-. ....+....||++|++.+. ..+.
T Consensus 420 ~~~q~k-qy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 420 AVVQSK-QYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eeeecc-ccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEE
Confidence 223333 21 23333333 34688999999999999963322222233322 1133444568888876554 4555
Q ss_pred EEEC
Q 017601 351 VADV 354 (369)
Q Consensus 351 iWd~ 354 (369)
+-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.62 E-value=0.99 Score=45.38 Aligned_cols=181 Identities=15% Similarity=0.183 Sum_probs=92.9
Q ss_pred ceeEEEEeccc------ceEEEEeCCcceE-EEEee---eCCcceeeeccCCCCCCCCcEEEEEcC------CeEEEEeC
Q 017601 161 WSMAAVARSFS------KSIDVYDQDIHLR-TLRTL---WYPSSLNFVQNLSPVNGGPNMLAVTEG------CQLTIWDL 224 (369)
Q Consensus 161 ~~~~a~~~s~d------~~i~lwd~~~~~~-~~~~~---~~~~~v~~~~~~~~~~~~~~lla~s~d------~~v~iwD~ 224 (369)
+.+++++ +.+ ..+..||...... .+... .....+..+. +..++++|.| .++..||.
T Consensus 285 ~~l~~vG-G~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-------~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 285 GKLVAVG-GYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-------GKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CeEEEEC-CCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-------CEEEEEccccCCCcccceEEEecC
Confidence 4566666 444 4678888754422 11111 1122333333 3456667766 46888999
Q ss_pred CcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC-----cEEEEeCCC--ceeeeeccccccCceEEEEEcCCCC
Q 017601 225 RMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR-----TVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDS 296 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~-----~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~ 296 (369)
++.. ...+..+... ..... ++ .-+| ..|+||.|| +|-.||.++ |..+..+... ....-.+.+ ++
T Consensus 357 ~~~~-W~~~a~M~~~-R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~---~g 428 (571)
T KOG4441|consen 357 RTNQ-WTPVAPMNTK-RSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVL---GG 428 (571)
T ss_pred CCCc-eeccCCccCc-cccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEE---CC
Confidence 8762 1122222211 11111 11 1256 888999887 478888876 4444433322 233333333 67
Q ss_pred CEEEEEECCC------eEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCCc-----EEEEECCCCc
Q 017601 297 NYIYVQGVDY------EVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSGS-----IFVADVVAKE 358 (369)
Q Consensus 297 ~~l~s~s~D~------~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg~-----I~iWd~~~~~ 358 (369)
.+.+.||.|+ ++..+|..++.-... +.-...+.++. .-++.+.+.|+.|+. |..+|.++.+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 8888888665 456777766432211 11111001111 126777777777763 6667776643
No 369
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.47 E-value=1.8 Score=42.76 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCC-----CcE--EEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVG-----DIL--YAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~-----~~v--~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
++.+..++.++.|.-.|.+++ +.+-++..... ..+ ..++...++.++.++.++.|.-+|.++++.+-++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG---~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG---KVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC---hhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 456777777899999999888 44433322100 001 01122112577888899999999999998876655
Q ss_pred ccccCc--eEEEEEcCC-CCCEEEEEE---------CCCeEEEEECcCCceeEEEE
Q 017601 280 HCSKYE--ITGLSFSSI-DSNYIYVQG---------VDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 280 ~h~~~~--v~~l~~sp~-d~~~l~s~s---------~D~~i~vwd~~~~~~~~~~~ 323 (369)
.. ... -..+.-+|. .+..++.++ .++.+..+|..+++.+-.+.
T Consensus 138 ~~-~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 138 NN-DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CC-CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 33 110 011222221 224455543 36789999999988776664
No 370
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.41 E-value=4.2 Score=40.15 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=87.5
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCc------EE-EEEECCCCcEEEEe---------CCCcEEEEeCCC
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDI------LY-AVCSSSTGNIAVAG---------ADRTVTIYDPRR 271 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~------v~-~v~~sp~g~lasgs---------~D~~v~vwD~~~ 271 (369)
+.++.++.++.|.-+|.+++ +.+-++... .. +. +..+. ++.++.++ .++.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG---~~~W~~~~~--~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~T 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETG---KQVWKFGNN--DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVET 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCC---CEeeeecCC--CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCC
Confidence 57777888999999999998 555444332 11 11 11121 24455554 367889999999
Q ss_pred ceeeeeccccccC-------------------ce-EEEEEcCCCCCEEEEEECCC------------------eEEEEEC
Q 017601 272 WSALSRWVHCSKY-------------------EI-TGLSFSSIDSNYIYVQGVDY------------------EVFCGQW 313 (369)
Q Consensus 272 ~~~~~~~~~h~~~-------------------~v-~~l~~sp~d~~~l~s~s~D~------------------~i~vwd~ 313 (369)
++.+-.+...... .+ .+.++.+ .+..++.++.|+ .|.-+|.
T Consensus 185 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 185 GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 8876654421010 01 1233344 456666776554 7999999
Q ss_pred cCCceeEEEEc--CCCee--e-----eeEc--CCCC---EEEEEeCCCcEEEEECCCCcc
Q 017601 314 RESSKVFAFRG--DSNWL--G-----FSKC--SNRD---VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 314 ~~~~~~~~~~g--~~~~~--~-----~~~~--~d~~---~l~sgs~dg~I~iWd~~~~~~ 359 (369)
++++.+=.++. |..|. . +... -++. .++.++.+|.++..|.++|+.
T Consensus 264 ~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 264 DTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 99887766642 22111 0 0111 1333 688899999999999999874
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.25 E-value=3.7 Score=36.35 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE 285 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~ 285 (369)
++.++.+...+.+.+.+.+++ .....+.....-.+.+. ..+++ .+..|+.|++.+..|.++..++.+.+-- ...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tG---s~~w~f~~~~~vk~~a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcg-G~~ 137 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTG---SQIWNFVILETVKVRAQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGT 137 (354)
T ss_pred CCEEEEEEccCcEEEEEecch---hheeeeeehhhhccceE-EcCCCceEEEecCCCcEEEecccccceEEecccC-Cce
Confidence 346777888999999999998 44444433201223332 35677 9999999999999999998888876533 222
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
-.+-...| -...|..+...|.+.--..+
T Consensus 138 f~sP~i~~-g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 138 FVSPVIAP-GDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eccceecC-CCceEEEEeccceEEEEccC
Confidence 22334444 22344445555555443433
No 372
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=1.3 Score=42.84 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=52.5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeecccc-------------------ccCceEEEEEcCCC--CCEE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHC-------------------SKYEITGLSFSSID--SNYI 299 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h-------------------~~~~v~~l~~sp~d--~~~l 299 (369)
-.|+-+..++.| .++-.+.+|.+.++=.+.+..-..++.. ..-.+..++|+|.. ..+|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 357788889999 8888899998776654432222111110 01346678999943 4678
Q ss_pred EEEECCCeEEEEECcCCcee
Q 017601 300 YVQGVDYEVFCGQWRESSKV 319 (369)
Q Consensus 300 ~s~s~D~~i~vwd~~~~~~~ 319 (369)
..-+.|++||+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88889999999999774443
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.16 E-value=0.85 Score=43.55 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=53.1
Q ss_pred CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeee--ccc-----cccCceEEEEEcCC----CC---CEEEEEECCC
Q 017601 241 GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSR--WVH-----CSKYEITGLSFSSI----DS---NYIYVQGVDY 306 (369)
Q Consensus 241 ~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~--~~~-----h~~~~v~~l~~sp~----d~---~~l~s~s~D~ 306 (369)
.++|++++.|.-|.+|.|.++|++.|.|+|....+.. +.. .....|+++.|+-. |+ -.|+.|...|
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 5899999998777999999999999999998766654 222 21346888988721 22 3577788889
Q ss_pred eEEEEECc
Q 017601 307 EVFCGQWR 314 (369)
Q Consensus 307 ~i~vwd~~ 314 (369)
.+.+|.+.
T Consensus 166 ~v~~fkIl 173 (395)
T PF08596_consen 166 NVLTFKIL 173 (395)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999875
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.11 E-value=4.2 Score=36.47 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=81.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-------
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW------- 278 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~------- 278 (369)
++.|+.|+++| +.+++.+.. .....+... ..|..+..-|+- .+++- .|+.+.++|+........-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~---~~~~~i~~~--~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDP---SKPTRILKL--SSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCC---ccceeEeec--ceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 56778888888 999998433 222333333 559999888876 43333 3599999998764433311
Q ss_pred -------cccccCceEEEE-EcCCCCCEEEEEECCCeEEEEECcCC-----ceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 279 -------VHCSKYEITGLS-FSSIDSNYIYVQGVDYEVFCGQWRES-----SKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 279 -------~~h~~~~v~~l~-~sp~d~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
... ...+...+ -....+...+.....++|.+|.+... +..+.+.-......+... ++.|+.|..
T Consensus 80 ~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 011 22344444 11224555556667779999998763 344444333322333333 566666664
Q ss_pred CCcEEEEECCCCc
Q 017601 346 SGSIFVADVVAKE 358 (369)
Q Consensus 346 dg~I~iWd~~~~~ 358 (369)
++ ..+.|+.++.
T Consensus 157 ~~-f~~idl~~~~ 168 (275)
T PF00780_consen 157 KG-FYLIDLNTGS 168 (275)
T ss_pred Cc-eEEEecCCCC
Confidence 44 6777887654
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.02 E-value=0.22 Score=31.70 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..+|..++|+| ...+||.+..||.|.++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC
Confidence 46799999999 9999999999999999987
No 376
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.91 E-value=6.3 Score=37.86 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=85.7
Q ss_pred CCCceeEEEEecccceEEEEeCCcce----EEEEeeeCCcceeeeccCCCC-CCCCcEEEEEcCCeEEEEeCCcccCC--
Q 017601 158 PSQWSMAAVARSFSKSIDVYDQDIHL----RTLRTLWYPSSLNFVQNLSPV-NGGPNMLAVTEGCQLTIWDLRMKENG-- 230 (369)
Q Consensus 158 p~~~~~~a~~~s~d~~i~lwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~~~~lla~s~d~~v~iwD~~~~~~~-- 230 (369)
+++...|++| |..|.++||+..... ..+-..+-...+--+....|. ......+++-.-..+.||.+......
T Consensus 34 ~~~~d~IivG-S~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVG-SYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEe-ccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 4455678888 999999999864211 112112222233333333332 22456788888899999998432111
Q ss_pred ----cee-eeeeccCCCcEEEEEECCCC------cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEE
Q 017601 231 ----GCL-HRICGSVGDILYAVCSSSTG------NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYI 299 (369)
Q Consensus 231 ----~~~-~~~~~~~~~~v~~v~~sp~g------~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l 299 (369)
-.+ ..+.|+-....+.++.-|-| .|.+=+.||++.+|+-+...-...+.+. -----+.|.| .-..+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~--llPgPl~Y~~-~tDsf 189 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF--LLPGPLCYCP-RTDSF 189 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC--CCCcCeEEee-cCCEE
Confidence 011 12233223455666665544 6888899999999996654333333322 1112355666 55667
Q ss_pred EEEECCCeEEEEEC
Q 017601 300 YVQGVDYEVFCGQW 313 (369)
Q Consensus 300 ~s~s~D~~i~vwd~ 313 (369)
++++.+..+..+..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 77777777777653
No 377
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.80 E-value=4 Score=40.25 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCeEEEEeCC--cccCCceeeeeeccCC--CcE--EEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeee
Q 017601 206 GGPNMLAVTEGCQLTIWDLR--MKENGGCLHRICGSVG--DIL--YAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALS 276 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~--~~~~~~~~~~~~~~~~--~~v--~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~ 276 (369)
+...|+|+-....|.+|.+. ..++.+.+....-+-+ -+| ..+.|+|.. .|++-.....=.+++++. .....
T Consensus 71 ~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka 150 (671)
T PF15390_consen 71 DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA 150 (671)
T ss_pred CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE
Confidence 34589999999999999987 3333333322111101 111 345699998 665544433334566654 22333
Q ss_pred eccccccCceEEEEEcCCCCCEEEEEEC-CCeEEEEECcC
Q 017601 277 RWVHCSKYEITGLSFSSIDSNYIYVQGV-DYEVFCGQWRE 315 (369)
Q Consensus 277 ~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D~~i~vwd~~~ 315 (369)
.+++ .+-|.+.+|.+ ||+.|+.+-. -=.-++||-..
T Consensus 151 Di~~--~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 151 DIKT--SGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eccC--CceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence 4544 47799999999 9998877543 33568898543
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.68 E-value=6.9 Score=37.52 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=116.8
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCCc----EEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYGH----LIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-.+....+||++ ..++.+.|..|. ++++|+.++ ..+.. .+.. ....++.|.+++..++.+.-
T Consensus 124 ~~~~~~~~Spdg---~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d---~i~~-------~~~~~~~W~~d~~~~~y~~~ 189 (414)
T PF02897_consen 124 VSLGGFSVSPDG---KRLAYSLSDGGSEWYTLRVFDLETG-KFLPD---GIEN-------PKFSSVSWSDDGKGFFYTRF 189 (414)
T ss_dssp EEEEEEEETTTS---SEEEEEEEETTSSEEEEEEEETTTT-EEEEE---EEEE-------EESEEEEECTTSSEEEEEEC
T ss_pred EEeeeeeECCCC---CEEEEEecCCCCceEEEEEEECCCC-cCcCC---cccc-------cccceEEEeCCCCEEEEEEe
Confidence 344567888885 355667677665 889998765 11111 1100 00123899997777666652
Q ss_pred cc---------cceEEEEeCCcceEE---E-EeeeCCcceeeeccCCCCCCCCcEEE-EEc--C-CeEEEEeCCccc-CC
Q 017601 169 SF---------SKSIDVYDQDIHLRT---L-RTLWYPSSLNFVQNLSPVNGGPNMLA-VTE--G-CQLTIWDLRMKE-NG 230 (369)
Q Consensus 169 s~---------d~~i~lwd~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~~lla-~s~--d-~~v~iwD~~~~~-~~ 230 (369)
.. ...|..|+++..... + ...........+. .++|+..++. ... + ..+.+.|+..+. ..
T Consensus 190 ~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~---~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 190 DEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVS---RSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp STTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEE---E-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred CcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEE---ecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 22 334778887643221 1 1111122011111 2345555443 332 3 457888887630 00
Q ss_pred ceeeeeeccCCCcEEEEEECCCC--cEEEE--eCCCcEEEEeCCCcee---eeeccccccCceEEEEEcCCCCCEEEE-E
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG--NIAVA--GADRTVTIYDPRRWSA---LSRWVHCSKYEITGLSFSSIDSNYIYV-Q 302 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g--~lasg--s~D~~v~vwD~~~~~~---~~~~~~h~~~~v~~l~~sp~d~~~l~s-~ 302 (369)
.....+.....+..+.+... .+ ++.+- ...+.|...++.+... ...+..| ...+.-..+.. .+.+|+. .
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~-~~~~Lvl~~ 343 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSL-FKDYLVLSY 343 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE-ETTEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEE-ECCEEEEEE
Confidence 22333332212334445444 44 33342 2345666678777543 2255555 55433333344 3445544 4
Q ss_pred ECCC--eEEEEECcCCceeEEEEcCCC--eeeeeEcC-CCCEEEEEeC---CCcEEEEECCCCcch
Q 017601 303 GVDY--EVFCGQWRESSKVFAFRGDSN--WLGFSKCS-NRDVLGGWSD---SGSIFVADVVAKENE 360 (369)
Q Consensus 303 s~D~--~i~vwd~~~~~~~~~~~g~~~--~~~~~~~~-d~~~l~sgs~---dg~I~iWd~~~~~~~ 360 (369)
-.++ .|+++|+..+........... ..++.... ...+.++-+. -++++.||+.+++..
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4454 689999983344444433221 01111112 2334443332 368899999988753
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.22 E-value=2.7 Score=42.30 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=94.4
Q ss_pred EEEECCCCceeEEEEeccc------ceEEEEeCCcceEE----EEeeeCCcceeeeccCCCCCCCCcEEEEEcCC-----
Q 017601 153 GLCFSPSQWSMAAVARSFS------KSIDVYDQDIHLRT----LRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC----- 217 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d------~~i~lwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~----- 217 (369)
++++.. +.++++| +.| .++..||....... +........+..+. +..++.+|.||
T Consensus 327 ~~~~~~--~~lYv~G-G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~-------g~iYavGG~dg~~~l~ 396 (571)
T KOG4441|consen 327 GVAVLN--GKLYVVG-GYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD-------GKLYAVGGFDGEKSLN 396 (571)
T ss_pred cEEEEC--CEEEEEc-cccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC-------CEEEEEeccccccccc
Confidence 455554 3567776 666 46777876532221 11111122222322 34455566664
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC------cEEEEeCCC--ceeeeeccccccCceEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR------TVTIYDPRR--WSALSRWVHCSKYEITG 288 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~------~v~vwD~~~--~~~~~~~~~h~~~~v~~ 288 (369)
++..||.++.+ ...+..+... ....-.+ .-+| ..++||.|+ +|..||..+ |+.+..+..- ......
T Consensus 397 svE~YDp~~~~-W~~va~m~~~-r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~ 471 (571)
T KOG4441|consen 397 SVECYDPVTNK-WTPVAPMLTR-RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGV 471 (571)
T ss_pred cEEEecCCCCc-ccccCCCCcc-eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccceE
Confidence 58889988751 1122212111 1112222 2256 777887554 578899887 4444444432 222222
Q ss_pred EEEcCCCCCEEEEEECCC-----eEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCC-----cEEEEECCC
Q 017601 289 LSFSSIDSNYIYVQGVDY-----EVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSG-----SIFVADVVA 356 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~-----~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg-----~I~iWd~~~ 356 (369)
..+ ++.+.+.||.|+ +|..+|..+.+-... +.....-.++. ..++...+.|+.|| +|..||..+
T Consensus 472 a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 472 AVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCC
Confidence 222 567788888776 367778776543222 11111000111 12677778888886 566777665
Q ss_pred Cc
Q 017601 357 KE 358 (369)
Q Consensus 357 ~~ 358 (369)
.+
T Consensus 548 d~ 549 (571)
T KOG4441|consen 548 DT 549 (571)
T ss_pred Cc
Confidence 53
No 380
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.06 E-value=1.5 Score=44.68 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=74.1
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCc-------c----------cCCceeeeeeccCCCcEEEEEEC--CCC
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRM-------K----------ENGGCLHRICGSVGDILYAVCSS--STG 253 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~-------~----------~~~~~~~~~~~~~~~~v~~v~~s--p~g 253 (369)
..++++....++. ...|++|.+||.|.+|.+++ . ...++...+... ...++++++ ...
T Consensus 101 HtIN~i~v~~lg~-~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~--~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 101 HTINFIKVGDLGG-EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG--ASAWGLDIHDYKKS 177 (717)
T ss_pred ceeeEEEecccCC-eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC--CceeEEEEEecCcc
Confidence 3444444333333 45788899999999997631 0 001122333333 789999998 666
Q ss_pred -cEEEEeCCCcEEEEeCCCc--ee-eeeccccccCceEEEEEcCCC--CC---EEEEEECCCeEEEEEC
Q 017601 254 -NIAVAGADRTVTIYDPRRW--SA-LSRWVHCSKYEITGLSFSSID--SN---YIYVQGVDYEVFCGQW 313 (369)
Q Consensus 254 -~lasgs~D~~v~vwD~~~~--~~-~~~~~~h~~~~v~~l~~sp~d--~~---~l~s~s~D~~i~vwd~ 313 (369)
+||+++....|.||-.... +. ...-..| ...|.+|+|-+.+ +. .+++++-.|++.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEecccccccccccccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888754431 11 1111124 5678999997732 22 7888999999999888
No 381
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.06 E-value=1.9 Score=41.32 Aligned_cols=110 Identities=16% Similarity=0.224 Sum_probs=67.4
Q ss_pred EEEEEECCCC-cEEEE-eCCC----cEEEEeCCCceeeeec-cccccCceEEEEEcCCCCCEEEEEECCC----------
Q 017601 244 LYAVCSSSTG-NIAVA-GADR----TVTIYDPRRWSALSRW-VHCSKYEITGLSFSSIDSNYIYVQGVDY---------- 306 (369)
Q Consensus 244 v~~v~~sp~g-~lasg-s~D~----~v~vwD~~~~~~~~~~-~~h~~~~v~~l~~sp~d~~~l~s~s~D~---------- 306 (369)
+..+++||+| ++|.+ +..| +++++|+++++.+... ... . -..+.|.+ |++.|+-...|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~--~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K--FSSVSWSD-DGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E--SEEEEECT-TSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c--cceEEEeC-CCCEEEEEEeCcccccccCCCC
Confidence 3457889999 65543 3334 5999999999877632 322 1 23499999 887766655433
Q ss_pred -eEEEEECcCCce--eEEEEc--CCC-eeeeeEcCCCCEEEEEeC-C---CcEEEEECCCC
Q 017601 307 -EVFCGQWRESSK--VFAFRG--DSN-WLGFSKCSNRDVLGGWSD-S---GSIFVADVVAK 357 (369)
Q Consensus 307 -~i~vwd~~~~~~--~~~~~g--~~~-~~~~~~~~d~~~l~sgs~-d---g~I~iWd~~~~ 357 (369)
.|+.|.+.+... ...|.+ +.. +..+....|+++|+..+. . ..+++-++..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 378888877432 344543 232 445566778888664333 2 34677787764
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.05 E-value=9.6 Score=39.93 Aligned_cols=133 Identities=16% Similarity=0.202 Sum_probs=90.0
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI 294 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~ 294 (369)
.|.|.+|.+....+.+.++..... +.++++..- +| ++| +-.-+|++|+..+.+.++.-..| ...+..+...-
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~--Gav~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~-~~~~~aL~l~v- 878 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVK--GAVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNI-SNPIIALDLQV- 878 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeec--cceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcc-cCCeEEEEEEe-
Confidence 477888887764333344444444 777777432 35 443 34568999999988788877777 78899999988
Q ss_pred CCCEEEEEECCCeEEEEECcCCc--eeEEEE-cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 295 DSNYIYVQGVDYEVFCGQWRESS--KVFAFR-GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 d~~~l~s~s~D~~i~vwd~~~~~--~~~~~~-g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.+..++.|..-+.+.+...+..+ ..-.-+ -+.+|+.-...-+++..+.+-.+|.+++-...
T Consensus 879 ~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 879 KGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred cCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 89999999888887776665543 222111 25566543333377888888889999887654
No 383
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.97 E-value=0.27 Score=45.22 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=44.9
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEE-EeCCCcEEEEeCCCceeeeeccc
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAV-AGADRTVTIYDPRRWSALSRWVH 280 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~las-gs~D~~v~vwD~~~~~~~~~~~~ 280 (369)
.|-++|+.++ +.+.++... .++.+|..+.+. +|.+ ...++.+.+||..+++.++++.+
T Consensus 270 eVWv~D~~t~---krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTH---KRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTT---EEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCC---eEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 5777788888 888888876 778899999988 6654 45689999999999999988774
No 384
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.45 E-value=0.41 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=24.9
Q ss_pred CcEEEEEECCCC----cEEEEeCCCcEEEEeCCC
Q 017601 242 DILYAVCSSSTG----NIAVAGADRTVTIYDPRR 271 (369)
Q Consensus 242 ~~v~~v~~sp~g----~lasgs~D~~v~vwD~~~ 271 (369)
+.|.++.|||+. +|+.+-.-+.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999754 777787888999999995
No 385
>PHA02713 hypothetical protein; Provisional
Probab=92.36 E-value=1.1 Score=44.87 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=57.2
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEEeCCC---ceeeeeccccccCceE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIYDPRR---WSALSRWVHCSKYEIT 287 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vwD~~~---~~~~~~~~~h~~~~v~ 287 (369)
++..||.++.. ...+..+... .... ++ ..-+| ..+.|+.+ .+|..||+++ |+.+..+... .....
T Consensus 433 ~ve~YDP~td~-W~~v~~m~~~-r~~~-~~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVNNI-WETLPNFWTG-TIRP-GV-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR-LSALH 507 (557)
T ss_pred eEEEECCCCCe-EeecCCCCcc-cccC-cE-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-cccce
Confidence 57788887651 1112222111 1111 12 22246 66667654 2467899885 5666666655 44444
Q ss_pred EEEEcCCCCCEEEEEECCC--eEEEEECcCCceeEEEEcCC
Q 017601 288 GLSFSSIDSNYIYVQGVDY--EVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D~--~i~vwd~~~~~~~~~~~g~~ 326 (369)
.+.+ ++.+.+.||.|+ .+-.+|..+.+-...-..|+
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 4444 668899999888 77788887765544444444
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.30 E-value=4.1 Score=41.12 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=62.8
Q ss_pred CcEEEEEc-CCeEEEEeCCcccCCceeee--eeccCCCcEEEEEEC--CCC-cEEEEeCCCcEEEEeCC---------Cc
Q 017601 208 PNMLAVTE-GCQLTIWDLRMKENGGCLHR--ICGSVGDILYAVCSS--STG-NIAVAGADRTVTIYDPR---------RW 272 (369)
Q Consensus 208 ~~lla~s~-d~~v~iwD~~~~~~~~~~~~--~~~~~~~~v~~v~~s--p~g-~lasgs~D~~v~vwD~~---------~~ 272 (369)
+.++.+.. ..++.|||.+.+ ..... +..+ +.|..+.|. |+| .+.+-+-.+.|.+|--. ++
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~---~lE~~~~f~~~--~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSG---VLEYEESFSED--DPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCc---EEEEeeeecCC--CceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 35555554 457999999977 33332 3334 889999884 667 66666677788887421 13
Q ss_pred eeeeec--cccccCceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 273 SALSRW--VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 273 ~~~~~~--~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
.++.++ ..|-..+|.+..|-+ +|.+++.+ ++.+.|+|-
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 334332 344125799999999 88776654 467777763
No 387
>PRK13616 lipoprotein LpqB; Provisional
Probab=92.27 E-value=1.4 Score=44.44 Aligned_cols=96 Identities=15% Similarity=0.002 Sum_probs=55.8
Q ss_pred CCCCCCCcEEEEE------cCC--eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC-----------
Q 017601 202 SPVNGGPNMLAVT------EGC--QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD----------- 261 (369)
Q Consensus 202 ~~~~~~~~lla~s------~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D----------- 261 (369)
..++++..++.+. .|. .|.+++.. + .. ..+... .....-.|+|+| .|++.+..
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g---~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-G---VA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCC-C---cc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3456777777665 244 45555542 2 22 223222 347778999998 66665432
Q ss_pred -CcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEE
Q 017601 262 -RTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 262 -~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~v 310 (369)
+.+.+.++..++... .. ...|..+.||| ||..++... ++.|.+
T Consensus 429 ~gql~~~~vd~ge~~~---~~-~g~Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RV-PGPISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred CceEEEEeccCchhhh---cc-CCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence 222222333332222 22 56799999999 999988765 577777
No 388
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.13 E-value=3.4 Score=36.02 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=62.8
Q ss_pred EEEECCCCceeEEEEecccceEEEEeCCc---------ceEEEEeee-----CCcceeeeccCCCCCCCCcEEEEEcCCe
Q 017601 153 GLCFSPSQWSMAAVARSFSKSIDVYDQDI---------HLRTLRTLW-----YPSSLNFVQNLSPVNGGPNMLAVTEGCQ 218 (369)
Q Consensus 153 ~l~~~p~~~~~~a~~~s~d~~i~lwd~~~---------~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~lla~s~d~~ 218 (369)
+++|+.+...+..+- +.+-+|.-||.+. .+..++..+ .|..+.. +.+|..++++-..++
T Consensus 162 gl~Wd~d~K~fY~iD-sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I------D~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYID-SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI------DTEGNLYVATFNGGT 234 (310)
T ss_pred cccccccCcEEEEEc-cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE------ccCCcEEEEEecCcE
Confidence 689997554444444 8899999998431 122222111 1122111 124667777778899
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC---cEEEEeC
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG---NIAVAGA 260 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g---~lasgs~ 260 (369)
|.-.|..++ +.+.++..+ ...|+|+||---+ +.+++..
T Consensus 235 V~~~dp~tG---K~L~eiklP-t~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 235 VQKVDPTTG---KILLEIKLP-TPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred EEEECCCCC---cEEEEEEcC-CCceEEEEecCCCccEEEEEehh
Confidence 999999999 889888877 7899999996543 4444443
No 389
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.08 E-value=3.2 Score=35.72 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=66.2
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCC------CcEEEE-eCCC----ceeee
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGAD------RTVTIY-DPRR----WSALS 276 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D------~~v~vw-D~~~----~~~~~ 276 (369)
.|+.+...+.|.+||+.+. ......+|..- +.|..+.++..| +|+|--.+ ..+|+| +.|. .+++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~-~~~~~~~F~Tv--~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQE-ECPLLCTFSTV--GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred eEEEEcCCCEEEEEEcccC-CCceeEEEcch--hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4545577789999999833 33566677765 889999999999 88885332 256665 2221 12221
Q ss_pred -ecccc--------------------ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 277 -RWVHC--------------------SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 277 -~~~~h--------------------~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
.+.|| +...+.+++..|..|++++. .++.+.+|.+..
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg--~~~~l~lf~l~~ 164 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG--CGNKLVLFTLKY 164 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE--cCCEEEEEEEEE
Confidence 22222 23457789999977777654 467899998764
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.94 E-value=1.1 Score=38.97 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCeEEEEeCCcccCCceeee-------eec------cCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCC
Q 017601 206 GGPNMLAVTEGCQLTIWDLRMKENGGCLHR-------ICG------SVGDILYAVCSSSTG-NIAVAGADRTVTIYDPR 270 (369)
Q Consensus 206 ~~~~lla~s~d~~v~iwD~~~~~~~~~~~~-------~~~------~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~ 270 (369)
.+..+++.+.+|.+++||++++ +++.. +.. .....|..+.++.+| -|++- .+|....||..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~---k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKG---KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCC---eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence 3678999999999999999987 43322 110 113678888889888 44443 35778888754
No 391
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.53 E-value=6.1 Score=37.78 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred cEEEEEECCCC-cEEEEeCCCcEEEEeCCCce-------------------------------------------eeeec
Q 017601 243 ILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS-------------------------------------------ALSRW 278 (369)
Q Consensus 243 ~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~-------------------------------------------~~~~~ 278 (369)
.|..+.|+++. .|++|...|-|-||-....+ +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47778888887 88888888888877432210 11112
Q ss_pred cccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc-C------C--CeeeeeE--cC---CC---CEEE
Q 017601 279 VHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG-D------S--NWLGFSK--CS---NR---DVLG 341 (369)
Q Consensus 279 ~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g-~------~--~~~~~~~--~~---d~---~~l~ 341 (369)
... +++|++++.| |=.++|.|..+|.+.|.|+|....++.-.- + . ....++. +. |+ -.++
T Consensus 83 ~~~-~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAK-QGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ----S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ecc-CCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 233 5789999997 457999999999999999988776666311 1 0 0012222 11 33 3688
Q ss_pred EEeCCCcEEEEECC
Q 017601 342 GWSDSGSIFVADVV 355 (369)
Q Consensus 342 sgs~dg~I~iWd~~ 355 (369)
.|...|.+.+|.+-
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999874
No 392
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.16 E-value=0.84 Score=42.92 Aligned_cols=91 Identities=18% Similarity=0.057 Sum_probs=55.3
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee-ecccc------------
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS-RWVHC------------ 281 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~-~~~~h------------ 281 (369)
.+.+.|||+.++ .. ..+... ...+....|||+| .+|-.. ++.|.+++..+++..+ +..|-
T Consensus 22 ~~~y~i~d~~~~---~~-~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETG---EI-TPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTT---EE-EESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCC---ce-EECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 457999999986 32 222221 2677888999999 666654 6789999987764432 22220
Q ss_pred ---ccCceEEEEEcCCCCCEEEEEECC-CeEEEEEC
Q 017601 282 ---SKYEITGLSFSSIDSNYIYVQGVD-YEVFCGQW 313 (369)
Q Consensus 282 ---~~~~v~~l~~sp~d~~~l~s~s~D-~~i~vwd~ 313 (369)
.-+.-.++-||| |+++||....| ..|+.+.+
T Consensus 96 eEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp HHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEE
T ss_pred cccccccccceEECC-CCCEEEEEEECCcCCceEEe
Confidence 001235688999 99999887654 34554443
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.95 E-value=0.94 Score=28.09 Aligned_cols=32 Identities=13% Similarity=-0.020 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCC--CEEEEEECCCeEEEEECcC
Q 017601 284 YEITGLSFSSIDS--NYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 284 ~~v~~l~~sp~d~--~~l~s~s~D~~i~vwd~~~ 315 (369)
+.|.++.|||..+ .+|+-+-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998344 4677666678999999985
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.90 E-value=13 Score=34.23 Aligned_cols=81 Identities=12% Similarity=0.004 Sum_probs=52.5
Q ss_pred CcEEEEEECCCC-cEEE-EeCCCcEEEEeCCC--cee-----eeeccccccCceEEEEEcCCCCCEEEEEECCC-eEEEE
Q 017601 242 DILYAVCSSSTG-NIAV-AGADRTVTIYDPRR--WSA-----LSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY-EVFCG 311 (369)
Q Consensus 242 ~~v~~v~~sp~g-~las-gs~D~~v~vwD~~~--~~~-----~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~-~i~vw 311 (369)
..-+.||||||+ .|.. =+..+.|.-|++.. +.. ...+... .+..-.++... +|.+.+++-.++ .|.+|
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~-~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE-PGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC-CCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 445789999999 5544 45557888777652 111 1112222 34555666666 788876555554 89999
Q ss_pred ECcCCceeEEEEcC
Q 017601 312 QWRESSKVFAFRGD 325 (369)
Q Consensus 312 d~~~~~~~~~~~g~ 325 (369)
+.. ++++..+.-.
T Consensus 241 ~pd-G~l~~~i~lP 253 (307)
T COG3386 241 NPD-GKLLGEIKLP 253 (307)
T ss_pred CCC-CcEEEEEECC
Confidence 988 8888888765
No 395
>PHA03098 kelch-like protein; Provisional
Probab=90.39 E-value=9.1 Score=38.16 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=51.8
Q ss_pred CC-cEEEEeCC------CcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC--------eEEEEECc
Q 017601 252 TG-NIAVAGAD------RTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY--------EVFCGQWR 314 (369)
Q Consensus 252 ~g-~lasgs~D------~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~--------~i~vwd~~ 314 (369)
++ .++.||.+ +.+..||+.+ +..+..+... ......+. - ++..++.||.+. .+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY--H-DGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE--E-CCEEEEECCccCCCCCcccceEEEecCC
Confidence 45 66666632 4688999876 4443333322 11112222 2 456666666432 37888887
Q ss_pred CCceeEEEE-cCCCeeeeeEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 017601 315 ESSKVFAFR-GDSNWLGFSKCSNRDVLGGWSDS-----GSIFVADVVAKE 358 (369)
Q Consensus 315 ~~~~~~~~~-g~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd~~~~~ 358 (369)
+++-...-. ...++.......++.+++.|+.+ +.|.++|..+.+
T Consensus 465 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 465 TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 653221110 00110100111266776667654 578888887653
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.84 E-value=5.8 Score=38.04 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=58.4
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc-eEEEEEcCCCC----------------CEEE-EE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE-ITGLSFSSIDS----------------NYIY-VQ 302 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~-v~~l~~sp~d~----------------~~l~-s~ 302 (369)
-.+.+++.+|.+ +.|+...=|.|.|+|+.++..++.|+|- .+. +.-+....... .+|+ =+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY-RdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY-RDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC-ccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 458899999999 7777777889999999999999999987 543 22121111011 1222 24
Q ss_pred ECCCeEEEEECcCCceeEEEEc
Q 017601 303 GVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 303 s~D~~i~vwd~~~~~~~~~~~g 324 (369)
-.-|.|-||.++.+..+..|..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 5678899999999988888753
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.51 E-value=15 Score=32.88 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=72.2
Q ss_pred ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC--cEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 231 GCLHRICGSVGDILYAVCSSSTG-NIAVAGADR--TVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 231 ~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~--~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
+.++++.|........+.|..+| ++-+.+.-| .|+.+|+.+++.+....-....---.+..-. .+...-.=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34555665523455667887778 666666655 7999999998876544321011122333333 233333345788
Q ss_pred EEEEECcCCceeEEEEcCC-CeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 308 VFCGQWRESSKVFAFRGDS-NWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 308 i~vwd~~~~~~~~~~~g~~-~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
..+||.++-+.+..|.-.. .| ++. .|++.|+....+..|+++|.++-+
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGW-GLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS---EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEEccccceEEEEEecCCcce-EEE--cCCCEEEEECCccceEEECCcccc
Confidence 9999999887777775332 22 343 577788877778899999987654
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.23 E-value=9.5 Score=39.46 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=50.1
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCce---------e---eeec-------c-ccccCceEEEEEcCC--CCCE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWS---------A---LSRW-------V-HCSKYEITGLSFSSI--DSNY 298 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~---------~---~~~~-------~-~h~~~~v~~l~~sp~--d~~~ 298 (369)
-.|..|.+||+| +||..|..+.+.+.=.+++. . .+++ . .+ ...|..+.|+|. ++.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~-~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNS-SLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCC-CceEEEEEEcCCCCCCCe
Confidence 468888999999 88888876644433223211 1 1111 1 22 457999999994 3578
Q ss_pred EEEEECCCeEEEEECcC
Q 017601 299 IYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 299 l~s~s~D~~i~vwd~~~ 315 (369)
|+.-..|+++|+||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 88889999999999975
No 399
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.88 E-value=17 Score=32.54 Aligned_cols=144 Identities=14% Similarity=0.030 Sum_probs=80.8
Q ss_pred CCcEEEEEcC--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeeccccccC
Q 017601 207 GPNMLAVTEG--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 207 ~~~lla~s~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
+..+-+.+.- ..|+.+|+.++ +...........---.++...+.....-=.++..-+||..+.+.+.++.-. .
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~--~ 130 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP--G 130 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-S--S
T ss_pred CEEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecC--C
Confidence 4444555544 47999999998 655544433111112233333323333456788999999999888877633 4
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeE-----cCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSK-----CSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~-----~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
+=..++ . |+..|+.+....+++++|..+-+....+....+-..+.. +.+|.+.|=.=....|..-|.++|+
T Consensus 131 EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 131 EGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp S--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred cceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 456666 3 666776666677899999888666655533210022222 2267777766666677777777775
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.84 E-value=18 Score=32.94 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=105.7
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCC-----cceEEEEe----------eeCCcceeeeccCCC--CC----CCC
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-----IHLRTLRT----------LWYPSSLNFVQNLSP--VN----GGP 208 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-----~~~~~~~~----------~~~~~~v~~~~~~~~--~~----~~~ 208 (369)
.| +++|+|.+.-. ++. ..-+...+||.. ...+.+.. ...|+.+.|.....| .. ...
T Consensus 25 ~W-Gia~~p~~~~W-Vad-ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AW-GLSYRPGGPFW-VAN-TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cc-eeEecCCCCEE-Eec-CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 46 89999966544 333 456788999985 11111111 113444444432222 01 123
Q ss_pred cEEEEEcCCeEEEEeCCcccCC--ceeeeeeccCCCcEEE-EEECCC--C-cE-EEEeCCCcEEEEeCCCceeeee---c
Q 017601 209 NMLAVTEGCQLTIWDLRMKENG--GCLHRICGSVGDILYA-VCSSST--G-NI-AVAGADRTVTIYDPRRWSALSR---W 278 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~--~~~~~~~~~~~~~v~~-v~~sp~--g-~l-asgs~D~~v~vwD~~~~~~~~~---~ 278 (369)
.++.+++||+|.=|...-.... ..+..+.......||. +++... + +| |+-=..++|.|||-. ..++.. +
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F 180 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSF 180 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCc
Confidence 5888999999999986543210 1112222111244543 565544 3 44 444468899999843 322211 1
Q ss_pred ccc-c--c---C---------ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--c--CCCeeeeeEcC----
Q 017601 279 VHC-S--K---Y---------EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--G--DSNWLGFSKCS---- 335 (369)
Q Consensus 279 ~~h-~--~---~---------~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g--~~~~~~~~~~~---- 335 (369)
... + . . .|+-..-.+ ++..=+.+.--+.|-++|.. +.+++.+. + ...| ++...|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~-~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPW-G~a~APa~FG 257 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDA-DRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPW-GLAIAPESFG 257 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCC-cccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCc-eeeeChhhhC
Confidence 100 0 0 0 111111122 22222233334688888875 45666662 2 2233 343322
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCc
Q 017601 336 --NRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 336 --d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.+.+|+.=-.||+|..+|..+++
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCc
Confidence 78889888889999999998876
No 401
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.74 E-value=3.2 Score=36.15 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=51.5
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec-------c-------ccccCceEEEEEcCCCCCEEEEEECCC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW-------V-------HCSKYEITGLSFSSIDSNYIYVQGVDY 306 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~-------~-------~h~~~~v~~l~~sp~d~~~l~s~s~D~ 306 (369)
.++..+ ..++ +|++-..+|.+++||+.+++.+..- . .. ...|..+.++. +|.-+++-+ ++
T Consensus 13 s~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~-~~~i~~~~lt~-~G~PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSS-SPNITSCSLTS-NGVPIVTLS-NG 87 (219)
T ss_pred CceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCC-CCcEEEEEEcC-CCCEEEEEe-CC
Confidence 444443 3456 8888899999999999997765432 1 23 56789999998 898888776 46
Q ss_pred eEEEEECcCCc
Q 017601 307 EVFCGQWRESS 317 (369)
Q Consensus 307 ~i~vwd~~~~~ 317 (369)
..+.||..-+.
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 78888876543
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.51 E-value=22 Score=33.53 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=64.5
Q ss_pred eEEEEeCCcccCCc--eeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC-------ceee-eecccc---ccC
Q 017601 218 QLTIWDLRMKENGG--CLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR-------WSAL-SRWVHC---SKY 284 (369)
Q Consensus 218 ~v~iwD~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~-------~~~~-~~~~~h---~~~ 284 (369)
.|.+++-..+. ++ ....+... ......++|.++| |.+++.....++.|... .+.+ ..+... ...
T Consensus 48 rI~~l~d~dgd-G~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~ 124 (367)
T TIGR02604 48 RILILEDADGD-GKYDKSNVFAEE-LSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH 124 (367)
T ss_pred EEEEEEcCCCC-CCcceeEEeecC-CCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence 66666544321 12 12333322 2456889999999 44455554444545432 1122 223221 024
Q ss_pred ceEEEEEcCCCCCEEEEEECC-------------------CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeC
Q 017601 285 EITGLSFSSIDSNYIYVQGVD-------------------YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSD 345 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D-------------------~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~ 345 (369)
....+.|.| ||.+.++.+.- +.|.-+|...++....-.|+.+-.++...++|+++++=..
T Consensus 125 ~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 125 SLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccC
Confidence 578899999 99887765521 3344445544433222234443345555567777765443
Q ss_pred C
Q 017601 346 S 346 (369)
Q Consensus 346 d 346 (369)
+
T Consensus 204 ~ 204 (367)
T TIGR02604 204 D 204 (367)
T ss_pred C
Confidence 3
No 403
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.34 E-value=24 Score=35.23 Aligned_cols=54 Identities=13% Similarity=-0.029 Sum_probs=33.5
Q ss_pred CeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.+.-+|+.+++..-.+.......+-.....+.+++.++.||.++.+|.++|+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~ 494 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEE 494 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCE
Confidence 346667777766555443222101101111566888899999999999999975
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.20 E-value=18 Score=32.16 Aligned_cols=144 Identities=17% Similarity=0.030 Sum_probs=73.8
Q ss_pred eeEEEECCCCceeEEEEeccc--ceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEE-EcCCeEEEEe-CCc
Q 017601 151 WSGLCFSPSQWSMAAVARSFS--KSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAV-TEGCQLTIWD-LRM 226 (369)
Q Consensus 151 ~~~l~~~p~~~~~~a~~~s~d--~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~-s~d~~v~iwD-~~~ 226 (369)
+...++++++..+.++. ..+ ..+.++..+.......... .+.. ..++++ +.+.++ ..+...+++. ...
T Consensus 26 ~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~~~~~~~~~~~g~---~l~~---PS~d~~-g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVS-EGDGGRSLYVGPAGGPVRPVLTGG---SLTR---PSWDPD-GWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred ccceEECCCCCeEEEEE-EcCCCCEEEEEcCCCcceeeccCC---cccc---ccccCC-CCEEEEEcCCCceEEEEecCC
Confidence 45789999665444443 233 3455555544333322111 1111 123344 455554 3455556663 333
Q ss_pred ccCCceeeeeeccC-CCcEEEEEECCCC-cEEEEe---CCCcEEEEeCCC---c------eeeeeccccccCceEEEEEc
Q 017601 227 KENGGCLHRICGSV-GDILYAVCSSSTG-NIAVAG---ADRTVTIYDPRR---W------SALSRWVHCSKYEITGLSFS 292 (369)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~v~~v~~sp~g-~lasgs---~D~~v~vwD~~~---~------~~~~~~~~h~~~~v~~l~~s 292 (369)
+. ...+ .+.... ...|.++.+|||| ++|.-. .++.|.|--+.. + .+....... ...+++++|.
T Consensus 98 g~-~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~ 174 (253)
T PF10647_consen 98 GT-GEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVTDVAWS 174 (253)
T ss_pred Cc-ceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcceeeeec
Confidence 31 1121 122110 1289999999999 665544 456777665432 2 111222232 4679999999
Q ss_pred CCCCCEEEEEECCC
Q 017601 293 SIDSNYIYVQGVDY 306 (369)
Q Consensus 293 p~d~~~l~s~s~D~ 306 (369)
+ ++.+++.+...+
T Consensus 175 ~-~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 D-DSTLVVLGRSAG 187 (253)
T ss_pred C-CCEEEEEeCCCC
Confidence 9 888776665433
No 405
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=87.93 E-value=9.6 Score=38.54 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=63.2
Q ss_pred EEEEecccceEEEEeCCcceEEEEe-eeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCC------cccCCceeeee
Q 017601 164 AAVARSFSKSIDVYDQDIHLRTLRT-LWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLR------MKENGGCLHRI 236 (369)
Q Consensus 164 ~a~~~s~d~~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~------~~~~~~~~~~~ 236 (369)
+|+..+...++.|||.....-.+.. +.....+..+.|... ++++.++++|-.+.|.||--. .+....+++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst-~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST-PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec-CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3443366778999998754422221 122334444444332 678999999999999998542 11112334443
Q ss_pred e--ccCCCcEEEEEECCCCcEEEEeCCCcEEEEeC
Q 017601 237 C--GSVGDILYAVCSSSTGNIAVAGADRTVTIYDP 269 (369)
Q Consensus 237 ~--~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~ 269 (369)
. .....+|.+.+|-++|.|++|+ .+.+.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 2 2214789999999999555554 346777773
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.63 E-value=19 Score=35.82 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=58.3
Q ss_pred eeEEEECCC----CceeEEEEecccceEEEEeCCc----ceEEE--Ee--ee-----CCcceeeeccCCCCCCCCcEEEE
Q 017601 151 WSGLCFSPS----QWSMAAVARSFSKSIDVYDQDI----HLRTL--RT--LW-----YPSSLNFVQNLSPVNGGPNMLAV 213 (369)
Q Consensus 151 ~~~l~~~p~----~~~~~a~~~s~d~~i~lwd~~~----~~~~~--~~--~~-----~~~~v~~~~~~~~~~~~~~lla~ 213 (369)
+.|++|.|- -+.++|+ ..-+.|.+|.+.. ..+.+ ++ .. -+..+. |+| ..-++++
T Consensus 59 V~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCV---WHP----k~~iL~V 129 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAV--QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCV---WHP----KKAILTV 129 (671)
T ss_pred eeeeeecCcccCCCCceEEE--eccceEEEEEeccCccccccceeeeeeeccCCcccCCCccc---ccC----CCceEEE
Confidence 568999985 3456776 4778999997631 11111 00 00 111112 222 2345554
Q ss_pred E-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEE-eCCCcEEEEeCC
Q 017601 214 T-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVA-GADRTVTIYDPR 270 (369)
Q Consensus 214 s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasg-s~D~~v~vwD~~ 270 (369)
- ....-.+++++... ......++.. +.|.|.||.+|| +|+++ +..=.-++||-.
T Consensus 130 LT~~dvSV~~sV~~d~-srVkaDi~~~--G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDS-SRVKADIKTS--GLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EecCceeEeeeeeeCC-ceEEEeccCC--ceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3 33333466776542 1233345555 999999999999 55443 223334688844
No 407
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.60 E-value=13 Score=29.57 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCeEEEEeCCccc-----CCceeeeeeccCCCcEEEEE---ECCCC---cEEEEeCCCcEEEEeCCCceee
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKE-----NGGCLHRICGSVGDILYAVC---SSSTG---NIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~-----~~~~~~~~~~~~~~~v~~v~---~sp~g---~lasgs~D~~v~vwD~~~~~~~ 275 (369)
...|++++..++|.|++..... ....+..+.-. ..|++++ |.|+. .|+.|+ ..++..||+.+..-+
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL 86 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh
Confidence 3478888888999999876432 12345566554 7888885 44333 666766 456889999886655
Q ss_pred eeccccccCceEEEEEcCC--CCCEEEEEECCCeEEEEECcCCce
Q 017601 276 SRWVHCSKYEITGLSFSSI--DSNYIYVQGVDYEVFCGQWRESSK 318 (369)
Q Consensus 276 ~~~~~h~~~~v~~l~~sp~--d~~~l~s~s~D~~i~vwd~~~~~~ 318 (369)
..-.- .+.|.++.+-.. ...-|+-.+-...|.-+|....+.
T Consensus 87 Fyke~--~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 87 FYKEV--PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred hhhhC--ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 43222 466777766321 123455555566777777655443
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=22 Score=32.18 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=53.2
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEE-EEECCCC-cEEEEe-----CCCcEEEEeCCC-ceeeeeccccccCceEEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYA-VCSSSTG-NIAVAG-----ADRTVTIYDPRR-WSALSRWVHCSKYEITGL 289 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~g-~lasgs-----~D~~v~vwD~~~-~~~~~~~~~h~~~~v~~l 289 (369)
...++|..+. +...++....+...+. =.||||| +|...- .-|.|-|||.+. .+.+.++..| .-.-..+
T Consensus 92 f~~vfD~~~~---~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~-GiGpHev 167 (366)
T COG3490 92 FAMVFDPNGA---QEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTH-GIGPHEV 167 (366)
T ss_pred eEEEECCCCC---cCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccC-CcCccee
Confidence 4667888876 3333322110112222 2699999 554432 246799999986 4667788888 7677889
Q ss_pred EEcCCCCCEEEEEE
Q 017601 290 SFSSIDSNYIYVQG 303 (369)
Q Consensus 290 ~~sp~d~~~l~s~s 303 (369)
.+.+ ||+.++.+.
T Consensus 168 ~lm~-DGrtlvvan 180 (366)
T COG3490 168 TLMA-DGRTLVVAN 180 (366)
T ss_pred EEec-CCcEEEEeC
Confidence 9999 999988754
No 409
>PRK10115 protease 2; Provisional
Probab=87.49 E-value=21 Score=36.96 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=64.7
Q ss_pred CcEEEEEECCCC-cEEEEe-----CCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECC------CeEE
Q 017601 242 DILYAVCSSSTG-NIAVAG-----ADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVD------YEVF 309 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs-----~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D------~~i~ 309 (369)
-.+..+.+||+| +|+.+. +.-.|++.|+.++..+...... .. ..++|++ |++.|+-...| ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEee-CCCEEEEEEecCCCCCCCEEE
Confidence 446677899999 665542 2336889999888654332222 11 5699999 88766555432 3678
Q ss_pred EEECcCC--ceeEEEEc--CCCeeeeeEcCCCCEEEEEeC---CCcEEEEEC
Q 017601 310 CGQWRES--SKVFAFRG--DSNWLGFSKCSNRDVLGGWSD---SGSIFVADV 354 (369)
Q Consensus 310 vwd~~~~--~~~~~~~g--~~~~~~~~~~~d~~~l~sgs~---dg~I~iWd~ 354 (369)
.+++.++ +....|.. ...+.......|+.+++..+. ++.+.+|+.
T Consensus 203 ~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 203 RHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8888876 44444543 222222233447776554333 357888885
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.43 E-value=12 Score=39.02 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=64.1
Q ss_pred CcEEEEeCCCcEEEEeCCCceeeeeccccccC-------ceEEEEEcC---------------CCCCEEEEEECCCeEEE
Q 017601 253 GNIAVAGADRTVTIYDPRRWSALSRWVHCSKY-------EITGLSFSS---------------IDSNYIYVQGVDYEVFC 310 (369)
Q Consensus 253 g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~-------~v~~l~~sp---------------~d~~~l~s~s~D~~i~v 310 (369)
+.++.++.++.|.-.|.++++.+-++...... .+..+++-. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 36666677777777788877766554422000 122233311 13357888889999999
Q ss_pred EECcCCceeEEEEcCCC--ee-----------eeeEcC--CCCEEEEEeC----------CCcEEEEECCCCcc
Q 017601 311 GQWRESSKVFAFRGDSN--WL-----------GFSKCS--NRDVLGGWSD----------SGSIFVADVVAKEN 359 (369)
Q Consensus 311 wd~~~~~~~~~~~g~~~--~~-----------~~~~~~--d~~~l~sgs~----------dg~I~iWd~~~~~~ 359 (369)
.|.++++..-.|..+.. |. .+...+ .+..++.|+. +|.|+-+|+++|+.
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99999988877642210 10 112223 3344444532 68899999999974
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=87.37 E-value=43 Score=35.45 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=75.8
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCC-
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSI- 294 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~- 294 (369)
..|+++|-. ..+..+... ..++..+.+.+. .++.++.++.+-..++..+........-...+|.|+.++|.
T Consensus 470 ~~iRl~ss~-----~~~~~W~~p--~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~ 542 (1096)
T KOG1897|consen 470 NSIRLVSSA-----GLRSEWRPP--GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLG 542 (1096)
T ss_pred ccEEEEcch-----hhhhcccCC--CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCC
Confidence 358888755 233444444 455555555566 77777777777777766554222211112468999999984
Q ss_pred -CCC---EEEEEECCCeEEEEECcCC-ceeEEE--EcCCCeeeeeEcC---CCCEEEEEeCCCcEEEEECC
Q 017601 295 -DSN---YIYVQGVDYEVFCGQWRES-SKVFAF--RGDSNWLGFSKCS---NRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 295 -d~~---~l~s~s~D~~i~vwd~~~~-~~~~~~--~g~~~~~~~~~~~---d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.+ +++.|.++..+.+--.-.. ..+... .+..--.++..+. |..+|.++..||.+..+-+.
T Consensus 543 d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 543 DAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred CCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 333 7888888877665544332 222222 2221001111111 57899999999999766443
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.36 E-value=12 Score=33.29 Aligned_cols=101 Identities=20% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCCCcEEEEE--c-CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEE-eCCCceee--e-
Q 017601 205 NGGPNMLAVT--E-GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIY-DPRRWSAL--S- 276 (369)
Q Consensus 205 ~~~~~lla~s--~-d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vw-D~~~~~~~--~- 276 (369)
++++.++++. + ...+.++.. + ........ ...+..-.|++++ ..+....+...+++ +...++.. .
T Consensus 33 ~dg~~~A~v~~~~~~~~L~~~~~--~---~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v 105 (253)
T PF10647_consen 33 PDGSRVAAVSEGDGGRSLYVGPA--G---GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV 105 (253)
T ss_pred CCCCeEEEEEEcCCCCEEEEEcC--C---Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence 4566676666 2 234555543 3 22222222 3567778999999 54555555556666 33333222 1
Q ss_pred eccccccCceEEEEEcCCCCCEEEEEE---CCCeEEEEECc
Q 017601 277 RWVHCSKYEITGLSFSSIDSNYIYVQG---VDYEVFCGQWR 314 (369)
Q Consensus 277 ~~~~h~~~~v~~l~~sp~d~~~l~s~s---~D~~i~vwd~~ 314 (369)
.+..- ...|+++.+|| ||..++... .++.|.+--+.
T Consensus 106 ~~~~~-~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 106 DWPGL-RGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred ccccc-CCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence 12211 22899999999 999988766 35677777654
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.29 E-value=14 Score=37.93 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=87.5
Q ss_pred eEEEEEEeCCeEEEEEEeCCchhhhcCC---CccccccCcccccccccccCCccceeeEEEEeecCCCCceEEEEEecCC
Q 017601 42 SCFVYIASGCHLYKLQVMMDDWFVSEGK---DSLLIPEQTPVMDSSMLNRCPHRSEVQSIALAETDSSGYMVLGSVDSYG 118 (369)
Q Consensus 42 ~~~~~~as~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~H~~~V~~l~~s~~~~~~~~~las~d~~g 118 (369)
.+++++|.+..|+.....-.... ...+ .....|........ ...-.+-...|+-|....=+ +..+|+.+.++|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~-p~~~p~~~~~t~p~~~~~~D~-~~s~~p~PHtIN~i~v~~lg--~~EVLl~c~DdG 124 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQL-PSRKPCLRFDTKPEFTSTPDR-LISTWPFPHTINFIKVGDLG--GEEVLLLCTDDG 124 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccc-cccccccccccCccccccccc-cccCCCCCceeeEEEecccC--CeeEEEEEecCC
Confidence 66889999998877763221111 1000 00112211111111 11111233457777654432 346888888899
Q ss_pred cEEEEEecCCC-------CCCccc--cccccCCC-CCCCCCCeeEEEEC--CCCceeEEEEecccceEEEEeCCc-----
Q 017601 119 HLIVSKLDTSG-------KDVDRL--TYSVLPQD-CGVGEGSWSGLCFS--PSQWSMAAVARSFSKSIDVYDQDI----- 181 (369)
Q Consensus 119 ~v~~~~~~~~~-------~~~~~~--~~~~~~~~-~~~~~~~~~~l~~~--p~~~~~~a~~~s~d~~i~lwd~~~----- 181 (369)
.|.+|.+..-. .+.+.. ...+.|.- ..++...| ||+++ . ...+||++ +....|.||-...
T Consensus 125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaW-GLdIh~~~-~~rlIAVS-sNs~~VTVFaf~l~~~r~ 201 (717)
T PF08728_consen 125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAW-GLDIHDYK-KSRLIAVS-SNSQEVTVFAFALVDERF 201 (717)
T ss_pred eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCcee-EEEEEecC-cceEEEEe-cCCceEEEEEEecccccc
Confidence 99999764210 011100 01122211 12233346 89998 4 45677777 7888888884321
Q ss_pred -ceEEEEeeeCCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeC
Q 017601 182 -HLRTLRTLWYPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDL 224 (369)
Q Consensus 182 -~~~~~~~~~~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~ 224 (369)
...........-+|.|+.... ++.|. .+++++-.|.+.+|++
T Consensus 202 ~~~~s~~~~hNIP~VSFl~~~~-d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 YHVPSHQHSHNIPNVSFLDDDL-DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccCCCeeEeecCCC-CCccceEEEEEeccCcEEEEEE
Confidence 111111222345677776432 12222 5556777899988887
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=87.20 E-value=27 Score=34.36 Aligned_cols=138 Identities=9% Similarity=-0.083 Sum_probs=65.7
Q ss_pred cEEEEEcC--CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC---cEEEEeCCC--ceeeeeccc
Q 017601 209 NMLAVTEG--CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR---TVTIYDPRR--WSALSRWVH 280 (369)
Q Consensus 209 ~lla~s~d--~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~---~v~vwD~~~--~~~~~~~~~ 280 (369)
.++.+|.+ ..+..||..++. ...+..+... ......+ .-+| ..+.||.++ ++..||.++ |+....+..
T Consensus 321 iYviGG~~~~~sve~ydp~~n~-W~~~~~l~~~-r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAA-WVNMPSLLKP-RCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred EEEECCcCCCCceEEEECCCCe-EEECCCCCCC-CcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 33444432 468889876541 1111222211 1111122 2356 667777553 577899876 443333332
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCC-----CcEEEEE
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDS-----GSIFVAD 353 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~d-----g~I~iWd 353 (369)
. ......+.+ ++.+.+.|+ .+-++|.++++-... +.......+.. ..++.+.+.|+.+ ..|..||
T Consensus 397 ~-r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd 468 (480)
T PHA02790 397 P-HYKSCALVF---GRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYN 468 (480)
T ss_pred c-cccceEEEE---CCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEE
Confidence 2 222222222 455656553 467788776433211 11101001111 2267777777754 4677888
Q ss_pred CCCCc
Q 017601 354 VVAKE 358 (369)
Q Consensus 354 ~~~~~ 358 (369)
.++.+
T Consensus 469 ~~~~~ 473 (480)
T PHA02790 469 NRTYS 473 (480)
T ss_pred CCCCe
Confidence 87654
No 415
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.73 E-value=4.2 Score=33.91 Aligned_cols=31 Identities=6% Similarity=-0.057 Sum_probs=24.1
Q ss_pred ceEEEEEcCC----C-CCEEEEEECCCeEEEEECcC
Q 017601 285 EITGLSFSSI----D-SNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 285 ~v~~l~~sp~----d-~~~l~s~s~D~~i~vwd~~~ 315 (369)
.|.+++|||. + +.+|+....++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999993 2 34577788899999998653
No 416
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.65 E-value=11 Score=37.64 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCcEEEEeCCCcEEEEeCCCceeeeeccccccCceE----------EEEEcCCCCCEEEEEECCCeEEEEECcCCceeEE
Q 017601 252 TGNIAVAGADRTVTIYDPRRWSALSRWVHCSKYEIT----------GLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFA 321 (369)
Q Consensus 252 ~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~----------~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~ 321 (369)
++.++.++.++.|.-+|.++++.+-++.......+. .+++ .+..++.++.|+.+...|.++++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 446777777888888899988876554421011111 1222 235677788899999999999888765
Q ss_pred EEc--CCCeeeeeEcC---CCCEEEEEe-----CCCcEEEEECCCCcc
Q 017601 322 FRG--DSNWLGFSKCS---NRDVLGGWS-----DSGSIFVADVVAKEN 359 (369)
Q Consensus 322 ~~g--~~~~~~~~~~~---d~~~l~sgs-----~dg~I~iWd~~~~~~ 359 (369)
+.. +.....+...| ++.+++..+ .+|.|+.+|.++|+.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence 532 11001222233 454444322 268999999998874
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.39 E-value=18 Score=35.31 Aligned_cols=101 Identities=11% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeecc-C--CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeee-eccccc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGS-V--GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALS-RWVHCS 282 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~-~--~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~-~~~~h~ 282 (369)
.+.|+-.| +..|.=-|.|-.. ..+...... + ....+|..-...|++|.||..|-|++|| |-+.... .+.+-
T Consensus 528 eqtlvGlS-~~svFrIDPR~~g--NKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyD-Rig~rAKtalP~l- 602 (776)
T COG5167 528 EQTLVGLS-DYSVFRIDPRARG--NKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYD-RIGKRAKTALPGL- 602 (776)
T ss_pred cceEEeec-ccceEEecccccC--CceeeeeehhccccccccccccccCceEEEecCCCceeeeh-hhcchhhhcCccc-
Confidence 44555544 4455556777542 222221111 0 2444555545556999999999999999 4444444 34454
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
...|-.+..+. +|.++++.+. .++.+-|++
T Consensus 603 G~aIk~idvta-~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 603 GDAIKHIDVTA-NGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccceeeeEeec-CCcEEEEeec-ceEEEEecc
Confidence 78899999999 9998777653 567777764
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.15 E-value=53 Score=34.43 Aligned_cols=147 Identities=12% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcE-------------EEEEECC---CCcEEEEeC----------
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDIL-------------YAVCSSS---TGNIAVAGA---------- 260 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v-------------~~v~~sp---~g~lasgs~---------- 260 (369)
+.+++..+.|+.+.-.|.+++ +.+-.+... +.| +.+.-+| ++.+++|+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TG---k~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~ 334 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTG---KLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEP 334 (764)
T ss_pred CCEEEEecCCCeEEEEECCCC---CEEEEecCC--CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCC
Confidence 357777778888888898888 555443321 111 1111122 345666643
Q ss_pred CCcEEEEeCCCceeeeeccc-c--c-----cC--------ce-EEEEEcCCCCCEEEEE------------------ECC
Q 017601 261 DRTVTIYDPRRWSALSRWVH-C--S-----KY--------EI-TGLSFSSIDSNYIYVQ------------------GVD 305 (369)
Q Consensus 261 D~~v~vwD~~~~~~~~~~~~-h--~-----~~--------~v-~~l~~sp~d~~~l~s~------------------s~D 305 (369)
+|.|+-+|+++|+.+-.+.. . . .+ .+ ...++.| ...+++.. -..
T Consensus 335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~ 413 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYS 413 (764)
T ss_pred CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCccccc
Confidence 68899999999887655431 0 0 00 01 1233444 22222221 123
Q ss_pred CeEEEEECcCCceeEEEEc--CCCee------ee-eEcC--CCC---EEEEEeCCCcEEEEECCCCcc
Q 017601 306 YEVFCGQWRESSKVFAFRG--DSNWL------GF-SKCS--NRD---VLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 306 ~~i~vwd~~~~~~~~~~~g--~~~~~------~~-~~~~--d~~---~l~sgs~dg~I~iWd~~~~~~ 359 (369)
+.|.-.|.++++..=.|+- |..|. .+ .... +|+ .++.++.+|.+++.|.++|+.
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 4566678888877666643 33332 11 1111 453 799999999999999999974
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.74 E-value=33 Score=35.61 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=30.4
Q ss_pred cceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCccc
Q 017601 193 SSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKE 228 (369)
Q Consensus 193 ~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~ 228 (369)
..+.-+.|+|.+..+..|+.-+.|+++|+||+....
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 456778888988888899999999999999997553
No 420
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=22 Score=34.24 Aligned_cols=143 Identities=13% Similarity=-0.002 Sum_probs=80.0
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceee----eeccccc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSAL----SRWVHCS 282 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~----~~~~~h~ 282 (369)
+..+-+...|.+.=|-++......++ .+.....++|.++.||+|. .||+--.|.+|.+++....+.. .+.+..
T Consensus 34 NkqlfavrSggatgvvvkgpndDVpi-Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k- 111 (657)
T KOG2377|consen 34 NKQLFAVRSGGATGVVVKGPNDDVPI-SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK- 111 (657)
T ss_pred cceEEEEecCCeeEEEEeCCCCCCCc-eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-
Confidence 44444444455666766544222222 2332225799999999999 9999999999999987432222 233333
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcC----CceeEEEEcCCCeeeeeEcCCCCE--EEEEeCCCcEEEEECCC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE----SSKVFAFRGDSNWLGFSKCSNRDV--LGGWSDSGSIFVADVVA 356 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~----~~~~~~~~g~~~~~~~~~~~d~~~--l~sgs~dg~I~iWd~~~ 356 (369)
...|.+..|+. + .-+|-.+. .-+-+|.... -+.+.+.....+| ...|++... |+++-..+++.=+.+++
T Consensus 112 ~~~IlGF~W~~-s-~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnW--y~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 112 NANILGFCWTS-S-TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNW--YMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred cceeEEEEEec-C-eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccE--EEEccccceEeeeccccccccccEEEee
Confidence 34588999987 4 44554443 3355555433 2334444444444 234665443 33333555555555544
Q ss_pred C
Q 017601 357 K 357 (369)
Q Consensus 357 ~ 357 (369)
+
T Consensus 187 ~ 187 (657)
T KOG2377|consen 187 G 187 (657)
T ss_pred c
Confidence 3
No 421
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=83.98 E-value=37 Score=31.76 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCCcEEEEE-cCC--eEEEEeCCcccCCceeeeeeccCCCcEEE-EEECCCC--cEEEEeCCC----cEEEEeCCCcee
Q 017601 205 NGGPNMLAVT-EGC--QLTIWDLRMKENGGCLHRICGSVGDILYA-VCSSSTG--NIAVAGADR----TVTIYDPRRWSA 274 (369)
Q Consensus 205 ~~~~~lla~s-~d~--~v~iwD~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~g--~lasgs~D~----~v~vwD~~~~~~ 274 (369)
+++..++-.+ .|| .|.++|...+ . ...+... .-.|.. +.|++++ .+.+|..+. .+..-++..+..
T Consensus 245 ~~~~~~l~~s~~~G~~hly~~~~~~~---~-~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 245 PDGNEFLWISERDGYRHLYLYDLDGG---K-PRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp TTSSEEEEEEETTSSEEEEEEETTSS---E-EEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred CCCCEEEEEEEcCCCcEEEEEccccc---c-eeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 3455666554 466 4555666554 2 3344422 366755 6788887 555666533 455556662334
Q ss_pred eeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 275 LSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 275 ~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
+..+... ...-..+.||| ++++++-.
T Consensus 320 ~~~LT~~-~~~~~~~~~Sp-dg~y~v~~ 345 (353)
T PF00930_consen 320 PKCLTCE-DGDHYSASFSP-DGKYYVDT 345 (353)
T ss_dssp EEESSTT-SSTTEEEEE-T-TSSEEEEE
T ss_pred eEeccCC-CCCceEEEECC-CCCEEEEE
Confidence 4444433 22226999999 98887653
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.78 E-value=18 Score=34.29 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=49.9
Q ss_pred EECCCC--cEEEEeCCCc--EEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE
Q 017601 248 CSSSTG--NIAVAGADRT--VTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR 323 (369)
Q Consensus 248 ~~sp~g--~lasgs~D~~--v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~ 323 (369)
+|.++| +|..+..|+. +.+.|+.+++..+--.+. .........+| +.+.++=......++-.|+++.+....+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-GDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-CCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 688999 4555555664 556688887665533332 23344566778 67777656566788999999987777777
Q ss_pred cCCCeeee-eE--cCCCCEEEE
Q 017601 324 GDSNWLGF-SK--CSNRDVLGG 342 (369)
Q Consensus 324 g~~~~~~~-~~--~~d~~~l~s 342 (369)
-...|.+. .. ..|+..++.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEE
T ss_pred CCcccccccceeeCCCccEEEE
Confidence 67766642 11 335665544
No 423
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.49 E-value=31 Score=31.68 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCe-EEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEe-CCCceee----eeccc
Q 017601 207 GPNMLAVTEGCQ-LTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYD-PRRWSAL----SRWVH 280 (369)
Q Consensus 207 ~~~lla~s~d~~-v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD-~~~~~~~----~~~~~ 280 (369)
++.+++++..|. +.-||--... -..+.... ...|.++.|+|++.|-.....|.|+.=| ....+.- .....
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~--~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~ 230 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNS--SRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKT 230 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS---EEEE--S--SS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS
T ss_pred CCcEEEEECcccEEEEecCCCcc--ceEEccCc--cceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCccc
Confidence 456777776655 4578754320 11222222 4889999999999333344788888776 2222221 11222
Q ss_pred cccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEc----CCCeeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 281 CSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRG----DSNWLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 281 h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g----~~~~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
- ...+..++|.+ +....++++ .+.+.+ ....++-=..-+. ..+...+... +.+.-+.-+++|.|--|
T Consensus 231 ~-~~~~ld~a~~~-~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~-~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 231 N-GYGILDLAYRP-PNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFV-NPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ---S-EEEEEESS-SS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEE-ETTEEEEE-STTEEEEE
T ss_pred C-ceeeEEEEecC-CCCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEc-CCCceEEECCCcEEEEe
Confidence 2 34589999999 777777665 444433 3333322222211 1111222222 23455555677777655
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.35 E-value=2.4 Score=43.71 Aligned_cols=140 Identities=11% Similarity=-0.043 Sum_probs=79.3
Q ss_pred CeEEEEeCCcccCCce----eeeeeccCCCcEEEEEECC---CC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEE
Q 017601 217 CQLTIWDLRMKENGGC----LHRICGSVGDILYAVCSSS---TG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITG 288 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~----~~~~~~~~~~~v~~v~~sp---~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~ 288 (369)
|.+.+||+..- .++. +-+....++..+.-|.|.| +. ++-.+-.+++|++....+... .-+.+| ...++.
T Consensus 153 g~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsH-s~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSH-SQRVTD 229 (1283)
T ss_pred hhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhc-CCCccc
Confidence 67889998631 1121 1122222244555555654 34 666777888999877655322 344456 444433
Q ss_pred E-----------EEcCCCCCEEEEEECCCeEEEEECc-----CCceeEEEEcCCCe-eeeeEcC--------CCC--EEE
Q 017601 289 L-----------SFSSIDSNYIYVQGVDYEVFCGQWR-----ESSKVFAFRGDSNW-LGFSKCS--------NRD--VLG 341 (369)
Q Consensus 289 l-----------~~sp~d~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~g~~~~-~~~~~~~--------d~~--~l~ 341 (369)
+ ..|| ||..++.++.||.+++|.+. ..+|++..+.|..- .....|. -+. +++
T Consensus 230 ~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEE
Confidence 2 3689 99999999999999998764 23455555544310 0000021 121 344
Q ss_pred EEe-CCCcEEEEECCCCcch
Q 017601 342 GWS-DSGSIFVADVVAKENE 360 (369)
Q Consensus 342 sgs-~dg~I~iWd~~~~~~~ 360 (369)
+++ ....+++|....-++.
T Consensus 309 tttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecccCCcceeEeeccchhhh
Confidence 444 4578899987655544
No 425
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=81.07 E-value=55 Score=31.59 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCC--ceeeeeeccCCCcEEEEEEC---CC-C--cEEEEeCCCcEEEEeCCC--ce---
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENG--GCLHRICGSVGDILYAVCSS---ST-G--NIAVAGADRTVTIYDPRR--WS--- 273 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~--~~~~~~~~~~~~~v~~v~~s---p~-g--~lasgs~D~~v~vwD~~~--~~--- 273 (369)
...++.+|..|.++||+....+.. ..+-..+. +.+|..+..- +. . .||+ =.-+.+.||.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l--~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL--KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec--CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 357888999999999998654211 12223333 3788888643 22 2 5555 3456777887632 11
Q ss_pred ----eeeecccc-ccCceEEEEEcCC---C-CCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEe
Q 017601 274 ----ALSRWVHC-SKYEITGLSFSSI---D-SNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 274 ----~~~~~~~h-~~~~v~~l~~sp~---d-~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs 344 (369)
.+..+..| +.....++..-|. . ..++..-|.||.+.+++-+.-...+.+.+----.++..++.-+.+++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 12222233 1222333333231 2 3678889999999999976533222232211002445566667788888
Q ss_pred CCCcEEEEEC
Q 017601 345 DSGSIFVADV 354 (369)
Q Consensus 345 ~dg~I~iWd~ 354 (369)
.+..+.-|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888877764
No 426
>PHA03098 kelch-like protein; Provisional
Probab=80.72 E-value=24 Score=35.10 Aligned_cols=130 Identities=10% Similarity=0.031 Sum_probs=61.6
Q ss_pred eEEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-cEEEEeCC-----CcEEEEeCCCc--eeeeeccccccCceE
Q 017601 218 QLTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-NIAVAGAD-----RTVTIYDPRRW--SALSRWVHCSKYEIT 287 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D-----~~v~vwD~~~~--~~~~~~~~h~~~~v~ 287 (369)
.+..||..+. +... .+... .....++. -++ .++.||.+ .++..||..+. +....+... .....
T Consensus 312 ~v~~yd~~~~---~W~~~~~~~~~-R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~ 384 (534)
T PHA03098 312 SVVSYDTKTK---SWNKVPELIYP-RKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPC 384 (534)
T ss_pred cEEEEeCCCC---eeeECCCCCcc-cccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-Cccce
Confidence 5778888765 3221 11111 11222222 256 67777765 35778888763 333333322 11112
Q ss_pred EEEEcCCCCCEEEEEECC------CeEEEEECcCCceeEE--EEcCCCeeeeeEcCCCCEEEEEeCCC--------cEEE
Q 017601 288 GLSFSSIDSNYIYVQGVD------YEVFCGQWRESSKVFA--FRGDSNWLGFSKCSNRDVLGGWSDSG--------SIFV 351 (369)
Q Consensus 288 ~l~~sp~d~~~l~s~s~D------~~i~vwd~~~~~~~~~--~~g~~~~~~~~~~~d~~~l~sgs~dg--------~I~i 351 (369)
.+. - ++.+.+.||.+ +.+..||..+.+-... +.... ........++.+.+.|+.++ .+.+
T Consensus 385 ~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 385 VVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 222 2 56777777742 4578888876432211 10000 00001112556666665432 3788
Q ss_pred EECCCCc
Q 017601 352 ADVVAKE 358 (369)
Q Consensus 352 Wd~~~~~ 358 (369)
||.++.+
T Consensus 461 yd~~~~~ 467 (534)
T PHA03098 461 YNPVTNK 467 (534)
T ss_pred ecCCCCc
Confidence 8887653
No 427
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.06 E-value=55 Score=31.04 Aligned_cols=195 Identities=18% Similarity=0.230 Sum_probs=102.4
Q ss_pred EEECCCCc--eeEEEEecccceEEEEeCC-cceEEEEeeeCCcceeeeccCCCCCCCCc--EEEEEc--C--CeEEEEeC
Q 017601 154 LCFSPSQW--SMAAVARSFSKSIDVYDQD-IHLRTLRTLWYPSSLNFVQNLSPVNGGPN--MLAVTE--G--CQLTIWDL 224 (369)
Q Consensus 154 l~~~p~~~--~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--lla~s~--d--~~v~iwD~ 224 (369)
+-.+|.++ .+++.+ ...+-+.+||+. +.++.+. ...+..+......+.+ +.. |+++++ + .+|++|-+
T Consensus 59 IWvnp~dp~kSlIigT-dK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~--g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGT-DKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLN--GKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EE--SS-GGG-EEEEE-ETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEET--TEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred EecCCCCcccceEEEE-eCCCCEEEEcCCCcEEEeec-CCCcceeeeecceecC--CceEEEEEEecCcCCCCeEEEEEe
Confidence 33444333 344444 567789999986 4444332 1222233222211111 222 445554 2 57999976
Q ss_pred CcccCCceeeeeecc------CCCcEEEEEE--CC-CC--cEEEEeCCCcEEEEeCC---Cc----eeeeeccccccCce
Q 017601 225 RMKENGGCLHRICGS------VGDILYAVCS--SS-TG--NIAVAGADRTVTIYDPR---RW----SALSRWVHCSKYEI 286 (369)
Q Consensus 225 ~~~~~~~~~~~~~~~------~~~~v~~v~~--sp-~g--~lasgs~D~~v~vwD~~---~~----~~~~~~~~h~~~~v 286 (369)
... + ..+..+... ....++.+|+ +| +| +.+....+|.+.-|-+. ++ +.+++|..- .++
T Consensus 135 d~~-~-g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~ 210 (381)
T PF02333_consen 135 DPD-T-GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQP 210 (381)
T ss_dssp ETT-T-TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-E
T ss_pred cCC-C-CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--Ccc
Confidence 521 1 233333211 0245788887 44 45 66778889988777653 33 456677643 578
Q ss_pred EEEEEcCCCCCEEEEEECCCeEEEEECcCC-----ceeEEEEcCC---CeeeeeE--cCC--CCEEEEEeCCCcEEEEEC
Q 017601 287 TGLSFSSIDSNYIYVQGVDYEVFCGQWRES-----SKVFAFRGDS---NWLGFSK--CSN--RDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 287 ~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~-----~~~~~~~g~~---~~~~~~~--~~d--~~~l~sgs~dg~I~iWd~ 354 (369)
-.|.... ....|+.+=.|.-|.-++.+.. ..+....+.. ..-++.- ..+ |-+|+|.=.+++..||+.
T Consensus 211 EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 211 EGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred eEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 8899888 7778888989988888888741 2222222221 1122222 233 335555556789999998
Q ss_pred CCC
Q 017601 355 VAK 357 (369)
Q Consensus 355 ~~~ 357 (369)
+..
T Consensus 290 ~~~ 292 (381)
T PF02333_consen 290 EGP 292 (381)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.36 E-value=10 Score=40.37 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=58.5
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCc--eeeeeccccccCc
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRW--SALSRWVHCSKYE 285 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~--~~~~~~~~h~~~~ 285 (369)
..+++..|+.|++.-+.... ..+..+.. +...+|++|+|-| .++.|-..|++.=|-..-. ..+.....-..+.
T Consensus 170 n~av~l~dlsl~V~~~~~~~--~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yr 245 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLA--QNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYR 245 (1405)
T ss_pred hhhhhccccchhhhhhhhhh--hhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcc
Confidence 45566778888888766431 23333333 3788999999999 9999999999988865422 2222222221367
Q ss_pred eEEEEEcCCCCCEEEE
Q 017601 286 ITGLSFSSIDSNYIYV 301 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s 301 (369)
|.+|.|-. ...++++
T Consensus 246 vl~v~Wl~-t~eflvv 260 (1405)
T KOG3630|consen 246 VLSVTWLS-TQEFLVV 260 (1405)
T ss_pred eeEEEEec-ceeEEEE
Confidence 99999976 5555555
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=78.54 E-value=23 Score=34.10 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCeEEEEeCCcccCCceeeeeeccCC-CcEEEEEEC--CCC--cEEEEeCCCcEEEE-eCCCc--ee--eeeccc-----
Q 017601 216 GCQLTIWDLRMKENGGCLHRICGSVG-DILYAVCSS--STG--NIAVAGADRTVTIY-DPRRW--SA--LSRWVH----- 280 (369)
Q Consensus 216 d~~v~iwD~~~~~~~~~~~~~~~~~~-~~v~~v~~s--p~g--~lasgs~D~~v~vw-D~~~~--~~--~~~~~~----- 280 (369)
..++.+||+++. +.++++..... .....|.|. |+. -++.+.-..+|-.| .-..+ +. +-++..
T Consensus 221 G~~l~vWD~~~r---~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 221 GHSLHVWDWSTR---KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp --EEEEEETTTT---EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred cCeEEEEECCCC---cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 568999999998 88888875311 345567664 544 23333334444433 22222 11 111111
Q ss_pred c-----------ccCceEEEEEcCCCCCEEEEEE-CCCeEEEEECcC
Q 017601 281 C-----------SKYEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRE 315 (369)
Q Consensus 281 h-----------~~~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~ 315 (369)
- ...-|+.+.+|. |.++|..+. .+|.||.||+..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSl-DDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISL-DDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp S---GGGGGG-EE------EEE-T-TS-EEEEEETTTTEEEEEE-SS
T ss_pred ccccccccccccCCCceEeEEEcc-CCCEEEEEcccCCcEEEEecCC
Confidence 0 023479999999 888887766 489999999976
No 430
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.46 E-value=13 Score=37.30 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=27.9
Q ss_pred eEEEEEcC---CCCCEEEEEECCCeEEEEECcCCceeEEE
Q 017601 286 ITGLSFSS---IDSNYIYVQGVDYEVFCGQWRESSKVFAF 322 (369)
Q Consensus 286 v~~l~~sp---~d~~~l~s~s~D~~i~vwd~~~~~~~~~~ 322 (369)
+..+++++ .+..+|++.+.|+++|+||+.++.++++.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 44444443 15678999999999999999999987665
No 431
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=77.80 E-value=18 Score=34.75 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=52.3
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCC----eeeeeEcCC---------------CCE-EEE
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSN----WLGFSKCSN---------------RDV-LGG 342 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~----~~~~~~~~d---------------~~~-l~s 342 (369)
...+.++..+| ++++.|..-.=|+|.++|+.++..++.++|-.. |.......+ ..+ ++=
T Consensus 307 ~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 55689999999 888777765557999999999888888877441 211111101 112 334
Q ss_pred EeCCCcEEEEECCCCcc
Q 017601 343 WSDSGSIFVADVVAKEN 359 (369)
Q Consensus 343 gs~dg~I~iWd~~~~~~ 359 (369)
.-.-|.|-||++++|..
T Consensus 386 aprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPR 402 (415)
T ss_pred eccCCeEEEEecCCCCE
Confidence 55689999999999864
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.64 E-value=12 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=24.2
Q ss_pred CCCcEEEEE-cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEE
Q 017601 206 GGPNMLAVT-EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCS 249 (369)
Q Consensus 206 ~~~~lla~s-~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~ 249 (369)
++..+.++. .+++|.++|..++ +.+..+... .....++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~---~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATN---KVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCC---eEEEEEECC--CCCceEEe
Confidence 344455443 5789999999877 666666543 33445554
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=76.53 E-value=42 Score=33.05 Aligned_cols=95 Identities=7% Similarity=-0.059 Sum_probs=47.1
Q ss_pred CcEEEEEcC---CeEEEEeCCcccCCceee--eeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeecc
Q 017601 208 PNMLAVTEG---CQLTIWDLRMKENGGCLH--RICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWV 279 (369)
Q Consensus 208 ~~lla~s~d---~~v~iwD~~~~~~~~~~~--~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~ 279 (369)
..++.+|.+ ..+..||.++. .... .+... ......+ .-+| ..+.|+ .+.+||.++ |+.+..+.
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~~-r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~ 434 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHD---QWQFGPSTYYP-HYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPI 434 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCC---EEEeCCCCCCc-cccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCC
Confidence 344444433 45778998765 2221 11111 1111122 2356 555664 578899876 44444443
Q ss_pred ccccCceEEEEEcCCCCCEEEEEECC-----CeEEEEECcC
Q 017601 280 HCSKYEITGLSFSSIDSNYIYVQGVD-----YEVFCGQWRE 315 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~d~~~l~s~s~D-----~~i~vwd~~~ 315 (369)
.. ......+.+ ++++.+.||.+ ..+.++|..+
T Consensus 435 ~~-r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 435 YP-RDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CC-ccccEEEEE---CCEEEEECCcCCCcccceEEEEECCC
Confidence 32 233333332 56777888765 2455566554
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.31 E-value=78 Score=29.77 Aligned_cols=145 Identities=11% Similarity=-0.015 Sum_probs=71.6
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccC-CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCceeeeecccccc-Cc
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSV-GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWSALSRWVHCSK-YE 285 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~~~~~~~h~~-~~ 285 (369)
+.+.+...+|.|.-.|..++ ..+-...... ...+.+-.+..+|.+..++.++.+..+|.++++.+-..... . ..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g---~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~-~~~~ 144 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTG---LVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVG-GSPY 144 (370)
T ss_pred CeEEEecCCCcEEEEeCCCC---cEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecC-CCeE
Confidence 34555556666666666665 2221111000 01111112222778999999999999999888887766655 3 11
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCe-eeeeEc--CCCCEEEEEeC--CCcEEEEECCCCc
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNW-LGFSKC--SNRDVLGGWSD--SGSIFVADVVAKE 358 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~-~~~~~~--~d~~~l~sgs~--dg~I~iWd~~~~~ 358 (369)
+..-..-. ++ .+...+.|+.+...|..++...-.+...... ..+... .....++.+.. ++.+.-.|+++|.
T Consensus 145 ~~~~~v~~-~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 145 YASPPVVG-DG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred EecCcEEc-Cc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11111111 22 3333336677777777776654443221100 001111 12334444444 5556656665554
No 435
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.11 E-value=1.2e+02 Score=31.85 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=48.4
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeec----c-----------c----cccCceEEEEEcCCCCCEEEE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRW----V-----------H----CSKYEITGLSFSSIDSNYIYV 301 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~----~-----------~----h~~~~v~~l~~sp~d~~~l~s 301 (369)
..|.+++...-+ .++..-.||+|.++|-.+.+.+... . | + -..+..++||| ++..++.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSP-t~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSP-TMCSLVQ 337 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc-CCCCceEEECc-ccceEEE
Confidence 567788777777 8899999999999998887555433 1 0 1 11334588999 8888888
Q ss_pred EECCCeEE
Q 017601 302 QGVDYEVF 309 (369)
Q Consensus 302 ~s~D~~i~ 309 (369)
-..|+.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888765
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.07 E-value=4.3 Score=42.05 Aligned_cols=104 Identities=14% Similarity=-0.020 Sum_probs=61.5
Q ss_pred EECCCC-cEEEEeCCCcEEEEeCC-----Cceeeeecccccc-CceEEEEEcCCC--------CCEEEEEEC-CCeEEEE
Q 017601 248 CSSSTG-NIAVAGADRTVTIYDPR-----RWSALSRWVHCSK-YEITGLSFSSID--------SNYIYVQGV-DYEVFCG 311 (369)
Q Consensus 248 ~~sp~g-~lasgs~D~~v~vwD~~-----~~~~~~~~~~h~~-~~v~~l~~sp~d--------~~~l~s~s~-D~~i~vw 311 (369)
..|||| .+|.+..||.++.|.+- .-.+++.|+.| . .+-.|..|..+. -.++++++. ...+++|
T Consensus 242 ~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph-d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w 320 (1283)
T KOG1916|consen 242 SLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH-DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFW 320 (1283)
T ss_pred eeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC-CCCCceeeeeccccccCCccceeEEEEecccCCcceeEe
Confidence 379999 99999999999888653 35667788888 4 333333344310 124555554 4579999
Q ss_pred ECcCCceeEEEEcCCCeeeeeEcCCCC------------EEEEEeCCCcEEEEEC
Q 017601 312 QWRESSKVFAFRGDSNWLGFSKCSNRD------------VLGGWSDSGSIFVADV 354 (369)
Q Consensus 312 d~~~~~~~~~~~g~~~~~~~~~~~d~~------------~l~sgs~dg~I~iWd~ 354 (369)
....-.|+..+..+. ..+...+|+. .+++-+-+++|.+|.-
T Consensus 321 ~~a~w~Cll~~~~d~--v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 321 AEAPWQCLLDKLIDG--VQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred eccchhhhhhhcccc--eEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 887766652222111 1111111221 2456677888888854
No 437
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.93 E-value=49 Score=30.04 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=54.6
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEe------CCCcEEEEeCCCcee--eee-ccccccCce
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAG------ADRTVTIYDPRRWSA--LSR-WVHCSKYEI 286 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs------~D~~v~vwD~~~~~~--~~~-~~~h~~~~v 286 (369)
..|.+||..+. +....-.+ -.+.|+++.|..+. +++.|. ....+..||..+..- +.. ...-+.++|
T Consensus 16 ~~lC~yd~~~~---qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNS---QWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCC---EeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 36899998765 33222222 14789999998666 666664 456788899876432 222 111124678
Q ss_pred EEEEEcCCCCCEEE-EEE-CC--CeEEEEEC
Q 017601 287 TGLSFSSIDSNYIY-VQG-VD--YEVFCGQW 313 (369)
Q Consensus 287 ~~l~~sp~d~~~l~-s~s-~D--~~i~vwd~ 313 (369)
+.+.+...|+..+. .|. .+ ..+..||=
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 88888554555444 332 23 35666763
No 438
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=73.75 E-value=18 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred cEEEEEECC----CC-cEEEEeCCCcEEEEeCCCceeeee
Q 017601 243 ILYAVCSSS----TG-NIAVAGADRTVTIYDPRRWSALSR 277 (369)
Q Consensus 243 ~v~~v~~sp----~g-~lasgs~D~~v~vwD~~~~~~~~~ 277 (369)
.+.++++++ +. ++++-+.|+++|+||+.+++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 455566666 34 889999999999999999988554
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.95 E-value=15 Score=21.85 Aligned_cols=29 Identities=14% Similarity=0.262 Sum_probs=21.0
Q ss_pred CCC-cE-EEEeCCCcEEEEeCCCceeeeecc
Q 017601 251 STG-NI-AVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 251 p~g-~l-asgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
|++ +| ++.-.+++|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 456 44 445568899999998887777655
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.48 E-value=50 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCC----CcEEEEeCCCcEEEEeCCCceee
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSST----GNIAVAGADRTVTIYDPRRWSAL 275 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~----g~lasgs~D~~v~vwD~~~~~~~ 275 (369)
+.-+|..+....+..||+... ..+..-..+ +.|+++.+-.- .-++..+.+-+|.=||..-.+..
T Consensus 63 ~~D~LliGt~t~llaYDV~~N---~d~Fyke~~--DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 63 GRDCLLIGTQTSLLAYDVENN---SDLFYKEVP--DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred CcCEEEEeccceEEEEEcccC---chhhhhhCc--cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 345666677788999999876 444332333 67788766322 23444444567777776544433
No 441
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=70.69 E-value=58 Score=28.86 Aligned_cols=129 Identities=12% Similarity=0.127 Sum_probs=69.6
Q ss_pred EEEEeCCcccCCceeeeeeccCCCcEEEE--EECCCC-cEEEEeC-C--CcEEEEeCCC------ceee-eeccccccCc
Q 017601 219 LTIWDLRMKENGGCLHRICGSVGDILYAV--CSSSTG-NIAVAGA-D--RTVTIYDPRR------WSAL-SRWVHCSKYE 285 (369)
Q Consensus 219 v~iwD~~~~~~~~~~~~~~~~~~~~v~~v--~~sp~g-~lasgs~-D--~~v~vwD~~~------~~~~-~~~~~h~~~~ 285 (369)
-.+||+.++ + +..+... ..+.|- +|-||| +|.+|+. | +.+++++.-. +... ..+... ..
T Consensus 48 s~~yD~~tn---~-~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~--RW 119 (243)
T PF07250_consen 48 SVEYDPNTN---T-FRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG--RW 119 (243)
T ss_pred EEEEecCCC---c-EEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC--Cc
Confidence 457999886 2 3333332 333333 577999 7777764 2 4688888654 1111 111211 12
Q ss_pred eEEEEEcCCCCCEEEEEECCC-eEEEEECcC-Cc-eeE-EEEc------CCCeeeeeE-cCCCCEEEEEeCCCcEEEEEC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDY-EVFCGQWRE-SS-KVF-AFRG------DSNWLGFSK-CSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~-~i~vwd~~~-~~-~~~-~~~g------~~~~~~~~~-~~d~~~l~sgs~dg~I~iWd~ 354 (369)
-.++..=| ||+.|+.||.+. +.-+|.-+. .. ... .+.. ..++-.+.. ++||++++.+..+..| ||.
T Consensus 120 YpT~~~L~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i--~d~ 196 (243)
T PF07250_consen 120 YPTATTLP-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII--YDY 196 (243)
T ss_pred cccceECC-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE--EeC
Confidence 22334446 999999988875 455665432 11 111 1111 112233333 6699999988876554 577
Q ss_pred CCCc
Q 017601 355 VAKE 358 (369)
Q Consensus 355 ~~~~ 358 (369)
.+.+
T Consensus 197 ~~n~ 200 (243)
T PF07250_consen 197 KTNT 200 (243)
T ss_pred CCCe
Confidence 6664
No 442
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=70.02 E-value=81 Score=28.14 Aligned_cols=153 Identities=13% Similarity=0.102 Sum_probs=84.3
Q ss_pred ECCCCceeEEEEec----ccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEe-CCc----
Q 017601 156 FSPSQWSMAAVARS----FSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWD-LRM---- 226 (369)
Q Consensus 156 ~~p~~~~~~a~~~s----~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD-~~~---- 226 (369)
...+++..++++-. .+..+++|.............-|..+..+-.-...| ..-.+|++.+..|.+|- ++-
T Consensus 25 l~gDGd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep-~~P~iAVA~G~~vyiYkNlkP~yKf 103 (257)
T PF14779_consen 25 LQGDGDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEP-RTPAIAVAAGPSVYIYKNLKPFYKF 103 (257)
T ss_pred cCCCCeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCC-CCCeEEEEeCCEEEEEecccceeee
Confidence 34456666666621 357899999876666555555566655443222222 23577777778888873 210
Q ss_pred -------------------ccCC---------ceeee---------------------------eec---cCCCcEEEEE
Q 017601 227 -------------------KENG---------GCLHR---------------------------ICG---SVGDILYAVC 248 (369)
Q Consensus 227 -------------------~~~~---------~~~~~---------------------------~~~---~~~~~v~~v~ 248 (369)
.++. +.++. .+. .....|+|++
T Consensus 104 tlP~~~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~ 183 (257)
T PF14779_consen 104 TLPPLEINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMA 183 (257)
T ss_pred cCCCCCCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEee
Confidence 0000 00000 000 0023577775
Q ss_pred E------CCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCC--CCEEEEEECCCeEEE
Q 017601 249 S------SSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSID--SNYIYVQGVDYEVFC 310 (369)
Q Consensus 249 ~------sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d--~~~l~s~s~D~~i~v 310 (369)
- .++. .|+.|.++|.|.|.|......+.++.-. .-++.=....-.| .-.++.++.||.|++
T Consensus 184 tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lp-svPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 184 TIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLP-SVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred eecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecC-CCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3 2334 8999999999999999887777766544 3333211111111 234666778888765
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=68.17 E-value=1.1e+02 Score=28.87 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=12.9
Q ss_pred CcEEEEEECCCC-cEEEEe
Q 017601 242 DILYAVCSSSTG-NIAVAG 259 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs 259 (369)
...+.++|+|+| ++++-.
T Consensus 184 rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 184 QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCccceECCCCCEEEEcc
Confidence 456789999999 555533
No 444
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.69 E-value=98 Score=33.60 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcc
Q 017601 335 SNRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 335 ~d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.++..++++-.||.+.+||+..++.
T Consensus 244 ~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 244 RDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCCceEEEEEecCCEEeeecCCCce
Confidence 3689999999999999999988753
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=67.68 E-value=1.1e+02 Score=28.57 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=52.5
Q ss_pred CcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCCcEEEEeCCCcEEEEeCCC---ceeeeeccccccC
Q 017601 208 PNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTGNIAVAGADRTVTIYDPRR---WSALSRWVHCSKY 284 (369)
Q Consensus 208 ~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~ 284 (369)
+.++.++..|.+.+=....++.-+.+..-.......++++.|.|++.+..++.+|.|.. -... ++.+....+- ..
T Consensus 226 g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~-~~ 303 (334)
T PRK13684 226 GNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEV-PS 303 (334)
T ss_pred CCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCC-Cc
Confidence 45666677777653223333211111110000124578899999885555566776653 2232 3332211222 34
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
..+.+.|.. +++.++ .+..|.|.-|+
T Consensus 304 ~~~~~~~~~-~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 304 NFYKIVFLD-PEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred ceEEEEEeC-CCceEE-ECCCceEEEec
Confidence 577788776 555544 56778877665
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=66.84 E-value=1.1e+02 Score=30.31 Aligned_cols=131 Identities=17% Similarity=0.046 Sum_probs=75.3
Q ss_pred EcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--------cEEEEeCCCcEEEEeCCCce-eeeeccccccC
Q 017601 214 TEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--------NIAVAGADRTVTIYDPRRWS-ALSRWVHCSKY 284 (369)
Q Consensus 214 s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--------~lasgs~D~~v~vwD~~~~~-~~~~~~~h~~~ 284 (369)
+.-..+.--|+..| +.+..+..+ ..+ -+.|.|+. .-++|-.+.+|--.|.|-.. .+.... . ++
T Consensus 487 ~~~~kLykmDIErG---kvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-s-Kd 558 (776)
T COG5167 487 GERDKLYKMDIERG---KVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-S-KD 558 (776)
T ss_pred CCcccceeeecccc---eeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-e-hh
Confidence 34455666677666 788888766 555 57788864 23456667777666887532 222111 1 23
Q ss_pred ceEEEEEcC---CCCCEEEEEECCCeEEEEECcCCc---eeEEEEcCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 285 EITGLSFSS---IDSNYIYVQGVDYEVFCGQWRESS---KVFAFRGDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 285 ~v~~l~~sp---~d~~~l~s~s~D~~i~vwd~~~~~---~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
.++--.||. ....++|.+|.-|-||++|--.-+ .+..+...- ..+...++|++|++.+.. .+.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI--k~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI--KHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccce--eeeEeecCCcEEEEeecc-eEEEEecc
Confidence 333333432 145789999999999999964322 222222122 344445688877665543 55555654
No 447
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=66.74 E-value=81 Score=29.65 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=60.9
Q ss_pred CCCcEEEEeCCCcEEEEeCCCceeeeecccc-ccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCee
Q 017601 251 STGNIAVAGADRTVTIYDPRRWSALSRWVHC-SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWL 329 (369)
Q Consensus 251 p~g~lasgs~D~~v~vwD~~~~~~~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~ 329 (369)
-++.+..+..||.|.-.|..++..+-....- ....+..-.+-. +|+ ++.++.++.+.+.|.++++..-.++.... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~ 143 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-P 143 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC-e
Confidence 3456666678888888888877654211100 011222222222 555 67788888999999988888777765541 0
Q ss_pred eeeEcC--CCCEEEEEeCCCcEEEEECCCCcc
Q 017601 330 GFSKCS--NRDVLGGWSDSGSIFVADVVAKEN 359 (369)
Q Consensus 330 ~~~~~~--d~~~l~sgs~dg~I~iWd~~~~~~ 359 (369)
.+...+ ....+..++.++.++.-|..+++.
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~ 175 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTL 175 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcE
Confidence 111112 333444454778887777776653
No 448
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=66.10 E-value=1.1e+02 Score=32.22 Aligned_cols=114 Identities=13% Similarity=0.030 Sum_probs=67.2
Q ss_pred CCcEEEEEECCCC--cEEEEeCCCcEEEEeCCC--------ceeeeeccccc------cCceEEEEEcCCCCCEEEEEEC
Q 017601 241 GDILYAVCSSSTG--NIAVAGADRTVTIYDPRR--------WSALSRWVHCS------KYEITGLSFSSIDSNYIYVQGV 304 (369)
Q Consensus 241 ~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~--------~~~~~~~~~h~------~~~v~~l~~sp~d~~~l~s~s~ 304 (369)
+.+...++|+|.. .||.-...|...|||+.. ........|++ .+....+.|.+ +.+.|+.+.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-
Confidence 3677889999988 999999999999999921 11111111221 12344788988 777777664
Q ss_pred CCeEEEEECcCCceeEEEEc---CCCeeeeeEcCC-CCEEEEEeCCCcEEEEECCCC
Q 017601 305 DYEVFCGQWRESSKVFAFRG---DSNWLGFSKCSN-RDVLGGWSDSGSIFVADVVAK 357 (369)
Q Consensus 305 D~~i~vwd~~~~~~~~~~~g---~~~~~~~~~~~d-~~~l~sgs~dg~I~iWd~~~~ 357 (369)
...+.++|+++......+.. ..+...+..+++ ..+++--. ...|...++...
T Consensus 223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 45678889988654331211 222234444542 23333222 256666677663
No 449
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=65.62 E-value=25 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=16.7
Q ss_pred CcEEEEEECCCC-cE-EEEeCC--CcEEEE
Q 017601 242 DILYAVCSSSTG-NI-AVAGAD--RTVTIY 267 (369)
Q Consensus 242 ~~v~~v~~sp~g-~l-asgs~D--~~v~vw 267 (369)
..-...+||||| .| .+...+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 566778999999 44 455555 666555
No 450
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.47 E-value=57 Score=29.64 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=54.1
Q ss_pred ccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEE--cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECC
Q 017601 278 WVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFR--GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 278 ~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~--g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+.+- ...+.++.|+| +.+.|.+......-.||=-.+|..++++. |-....+++..-+|.+.++--.++.+++..+.
T Consensus 81 i~g~-~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGE-TANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccc-cccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 3454 56699999999 88888887766666677666788887763 32222345555577777777778888888765
Q ss_pred CC
Q 017601 356 AK 357 (369)
Q Consensus 356 ~~ 357 (369)
..
T Consensus 159 ~~ 160 (316)
T COG3204 159 AD 160 (316)
T ss_pred CC
Confidence 54
No 451
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=64.89 E-value=8.6 Score=27.02 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=15.8
Q ss_pred CccccceeEEEecCC-CceEEEEEE
Q 017601 25 GNIQCTRLALHVNED-GCSCFVYIA 48 (369)
Q Consensus 25 ~~~~~~r~~~~~~~~-~~~~~~~~a 48 (369)
..+.+++++++|+++ +++|+++|+
T Consensus 43 ~~~~~~~ll~GT~t~~~~~n~l~v~ 67 (74)
T PF12265_consen 43 NYPHSQYLLLGTQTSGQEQNYLYVM 67 (74)
T ss_dssp -SEEEEEEEEE---SS-S-EEEEEE
T ss_pred CCccEEEEEEEECcCCCCCCEEEEE
Confidence 457889999999984 599999999
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=64.87 E-value=1.2e+02 Score=28.16 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=33.3
Q ss_pred cEEEEEECCCCcEEEEeCCCcEEEEeCCCcee---eeec----cccccCceEEEEEcC
Q 017601 243 ILYAVCSSSTGNIAVAGADRTVTIYDPRRWSA---LSRW----VHCSKYEITGLSFSS 293 (369)
Q Consensus 243 ~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~~---~~~~----~~h~~~~v~~l~~sp 293 (369)
...+|+|.|||.++++-..|.|.+++ ..+.. +..+ ... ......++|+|
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~-~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADG-ERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTST-TBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccc-cCCcccceecc
Confidence 35789999999556667799999999 33332 3222 123 45689999999
No 453
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.82 E-value=1.2e+02 Score=27.97 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=69.0
Q ss_pred CeeEEEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeC-Cccc
Q 017601 150 SWSGLCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDL-RMKE 228 (369)
Q Consensus 150 ~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~-~~~~ 228 (369)
.+..+..++ +..+++++ +.-.-..-||.+......+.......+..+. +.++ +.|...+..+.|+.=|. ...+
T Consensus 146 s~~~~~r~~-dG~~vavs-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~g---f~~~-~~lw~~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 146 SINDITRSS-DGRYVAVS-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMG---FSPD-GNLWMLARGGQIQFSDDPDDGE 219 (302)
T ss_dssp -EEEEEE-T-TS-EEEEE-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEE---E-TT-S-EEEEETTTEEEEEE-TTEEE
T ss_pred eeEeEEECC-CCcEEEEE-CcccEEEEecCCCccceEEccCccceehhce---ecCC-CCEEEEeCCcEEEEccCCCCcc
Confidence 455677777 44567776 5555566788765433322222233333333 2343 45555668888888872 2221
Q ss_pred CC-ceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 229 NG-GCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 229 ~~-~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.- +.+..+... ...+..++|.+++ ..|+|+ .|++.+ .... ++.......- ....+.+.|.+ +.+-+ ..+
T Consensus 220 ~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~-~~n~~~i~f~~-~~~gf-~lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENV-PSNLYRIVFVN-PDKGF-VLG 293 (302)
T ss_dssp EE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTS-SS---EEEEEE-TTEEE-EE-
T ss_pred ccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECccccCC-CCceEEEEEcC-CCceE-EEC
Confidence 00 111111111 3458999999988 556555 454433 3333 4444333333 45688899976 44444 456
Q ss_pred CCCeEEEE
Q 017601 304 VDYEVFCG 311 (369)
Q Consensus 304 ~D~~i~vw 311 (369)
.||.+.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78876544
No 454
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.68 E-value=1e+02 Score=27.24 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=59.0
Q ss_pred CcEEEEEECCCC--cEEEEeCCCcEEEEe--CCCce-----eeeecccc---ccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 242 DILYAVCSSSTG--NIAVAGADRTVTIYD--PRRWS-----ALSRWVHC---SKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 242 ~~v~~v~~sp~g--~lasgs~D~~v~vwD--~~~~~-----~~~~~~~h---~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
..-+.++|+.+. ...+-+.+-+|.-|| ..+|. .+..++.. ....--.++... +|.+.+++=.-++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence 344678898777 566778888898888 44433 23333321 011123344455 788888888888999
Q ss_pred EEECcCCceeEEEEcCCCeeeeeEcC
Q 017601 310 CGQWRESSKVFAFRGDSNWLGFSKCS 335 (369)
Q Consensus 310 vwd~~~~~~~~~~~g~~~~~~~~~~~ 335 (369)
-.|..+++.+..+.-.. ..++.|+
T Consensus 237 ~~dp~tGK~L~eiklPt--~qitscc 260 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLPT--PQITSCC 260 (310)
T ss_pred EECCCCCcEEEEEEcCC--CceEEEE
Confidence 99999999998887555 3444433
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.48 E-value=37 Score=36.52 Aligned_cols=97 Identities=10% Similarity=0.040 Sum_probs=63.7
Q ss_pred EcCCeEEEEeCCcccCCc--eeeeeecc-----CCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCc-eeeeecccccc
Q 017601 214 TEGCQLTIWDLRMKENGG--CLHRICGS-----VGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRW-SALSRWVHCSK 283 (369)
Q Consensus 214 s~d~~v~iwD~~~~~~~~--~~~~~~~~-----~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~-~~~~~~~~h~~ 283 (369)
+.+..|..||+++-.... ....+..+ ......++.|+|.= ..|....|+.|++.-+.-. ....++. ..
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p--~t 198 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP--VT 198 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC--cc
Confidence 445589999998532111 01111111 02455677899987 7788889999998876532 2222322 24
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEEC
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQW 313 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~ 313 (369)
..+++++|+| .|..|+.|-..|++.-|..
T Consensus 199 ~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 199 NSQTAVLWSP-RGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred cceeeEEecc-ccceeeEecCCCeEEEeec
Confidence 6789999999 9999999988888877754
No 456
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=62.87 E-value=18 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=20.2
Q ss_pred CCcEEEEeCCCcEEEEeCCCceeeee
Q 017601 252 TGNIAVAGADRTVTIYDPRRWSALSR 277 (369)
Q Consensus 252 ~g~lasgs~D~~v~vwD~~~~~~~~~ 277 (369)
++.++.++.++.+..+|.++++.+-+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 34677788899999999988876543
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.15 E-value=91 Score=34.22 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCcEEEEEECCCCcEEEEeCCCcEEEEeCC----C---ce-e----------------eeecc-ccccCceEEEEEcCCC
Q 017601 241 GDILYAVCSSSTGNIAVAGADRTVTIYDPR----R---WS-A----------------LSRWV-HCSKYEITGLSFSSID 295 (369)
Q Consensus 241 ~~~v~~v~~sp~g~lasgs~D~~v~vwD~~----~---~~-~----------------~~~~~-~h~~~~v~~l~~sp~d 295 (369)
+..|+|+....+|++.-|+.|| .||.+- . ++ + +..+. .+ .++|..+.... .
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~-~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSS-KDPIRQITIDN-S 253 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCC-CCcceeeEecc-c
Confidence 5778999978888777777777 556532 1 01 0 11233 45 78999999987 7
Q ss_pred CCEEEEEECCCeEEEEECcC
Q 017601 296 SNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 296 ~~~l~s~s~D~~i~vwd~~~ 315 (369)
.+.+.+-+.-++|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 78899999999999999976
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.83 E-value=1.5 Score=42.14 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=86.5
Q ss_pred EEECCCCceeEEEEecccceEEEEeCCcceEEEEeeeCCcceeeeccCCCCCCCCcEE-EEEcCCeEEEEeCCcccCCce
Q 017601 154 LCFSPSQWSMAAVARSFSKSIDVYDQDIHLRTLRTLWYPSSLNFVQNLSPVNGGPNML-AVTEGCQLTIWDLRMKENGGC 232 (369)
Q Consensus 154 l~~~p~~~~~~a~~~s~d~~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ll-a~s~d~~v~iwD~~~~~~~~~ 232 (369)
..|-|.+.. ++++ +.+..+..||....... ....+...-...+ +.++..++ .+-..+.+.|||+.+... +.
T Consensus 40 ~~w~~e~~n-lava-ca~tiv~~YD~agq~~l--e~n~tg~aldm~w---DkegdvlavlAek~~piylwd~n~eyt-qq 111 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVA-CANTIVIYYDKAGQVIL--ELNPTGKALDMAW---DKEGDVLAVLAEKTGPIYLWDVNSEYT-QQ 111 (615)
T ss_pred eeEecCCCc-eehh-hhhhHHHhhhhhcceec--ccCCchhHhhhhh---ccccchhhhhhhcCCCeeechhhhhhH-HH
Confidence 567786665 6666 67888999986543321 1111211111111 12233333 345578999999986521 11
Q ss_pred eeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEE
Q 017601 233 LHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVF 309 (369)
Q Consensus 233 ~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~ 309 (369)
+ .+.+. ..-.-+.|++.+ .++.|-..+.+.|++.++.+.+-..-.| ...++++++.+ .+ +.+.++.|..+-
T Consensus 112 L-E~gg~--~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~l-Ed-~vil~dcd~~L~ 183 (615)
T KOG2247|consen 112 L-ESGGT--SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTL-ED-YVILCDCDNTLS 183 (615)
T ss_pred H-hccCc--chHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecc-cc-eeeecCcHHHHH
Confidence 1 11121 222226899988 8899989999999998877666555558 88999999998 43 455666565443
No 459
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=59.07 E-value=1.7e+02 Score=28.39 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred ccceEEEEeCC--cceEEEEeee---CCcceeeeccCCCCCCCC-cEEEEEcCCeEEEEeC-Cccc-CCceeeeeeccC-
Q 017601 170 FSKSIDVYDQD--IHLRTLRTLW---YPSSLNFVQNLSPVNGGP-NMLAVTEGCQLTIWDL-RMKE-NGGCLHRICGSV- 240 (369)
Q Consensus 170 ~d~~i~lwd~~--~~~~~~~~~~---~~~~v~~~~~~~~~~~~~-~lla~s~d~~v~iwD~-~~~~-~~~~~~~~~~~~- 240 (369)
+-.++.+||.. +.++++..-. -+-.+.|... |+.. -++.+.-..+|..|=- ..++ ..+.+..+....
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~----P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHD----PDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SS----TT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCC----CCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 44689999986 3445554321 2345667653 3222 3444444445544432 2221 001111111100
Q ss_pred ---------------CCcEEEEEECCCC-cE-EEEeCCCcEEEEeCCC
Q 017601 241 ---------------GDILYAVCSSSTG-NI-AVAGADRTVTIYDPRR 271 (369)
Q Consensus 241 ---------------~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~~ 271 (369)
..-|+.|..|.|. +| ++.=.+|.|+.||+..
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 1347889999999 44 5555699999999875
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=57.63 E-value=1.8e+02 Score=27.74 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=66.6
Q ss_pred EEEEcCCeEEEEeCCcccC----CceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC-----ceeeeecc-
Q 017601 211 LAVTEGCQLTIWDLRMKEN----GGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR-----WSALSRWV- 279 (369)
Q Consensus 211 la~s~d~~v~iwD~~~~~~----~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~-----~~~~~~~~- 279 (369)
+....+|.+.-|-+....+ .+.+++|... ..+-.|...... .|..|-+|.-|.-|+.+- ++.+....
T Consensus 175 ~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g 252 (381)
T PF02333_consen 175 FVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG 252 (381)
T ss_dssp EEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS
T ss_pred EEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc
Confidence 3355688777777653222 2457778766 788888887776 999999998888787753 23333333
Q ss_pred ccccCceEEEEEcCC-CC-CEEE-EEECCCeEEEEECcC-CceeEEE
Q 017601 280 HCSKYEITGLSFSSI-DS-NYIY-VQGVDYEVFCGQWRE-SSKVFAF 322 (369)
Q Consensus 280 ~h~~~~v~~l~~sp~-d~-~~l~-s~s~D~~i~vwd~~~-~~~~~~~ 322 (369)
.|+...|-.|++-.. ++ .+|+ |.-.+++..+||.+. ...+..|
T Consensus 253 ~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 253 DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 244677888877421 33 3444 444578999999875 3545555
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=56.28 E-value=1e+02 Score=25.50 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=26.7
Q ss_pred ceeeEEEEeecCC--CCceEEEEEecCCcEEEEEec
Q 017601 93 SEVQSIALAETDS--SGYMVLGSVDSYGHLIVSKLD 126 (369)
Q Consensus 93 ~~V~~l~~s~~~~--~~~~~las~d~~g~v~~~~~~ 126 (369)
..|.+++|||.+- ...-+||....+|.|.+|.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 3789999999652 235788999999999998654
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=54.81 E-value=1 Score=43.25 Aligned_cols=111 Identities=9% Similarity=0.075 Sum_probs=71.5
Q ss_pred CCcEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceee-eecccccc
Q 017601 207 GPNMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSAL-SRWVHCSK 283 (369)
Q Consensus 207 ~~~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~-~~~~~h~~ 283 (369)
+..++.+..+..+..||-.. +........ +..-.++|.-++ .++.+-..+.+.+||+.+.... -.+.+.+.
T Consensus 46 ~~nlavaca~tiv~~YD~ag----q~~le~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKAG----QVILELNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred CCceehhhhhhHHHhhhhhc----ceecccCCc--hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 44566667778888998543 233223332 556678899888 5566777889999998763221 12222212
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCC
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDS 326 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~ 326 (369)
... +.|++ ....++.+-..+.+.+++..+.+.+....-|.
T Consensus 120 ~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~ 159 (615)
T KOG2247|consen 120 KSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQ 159 (615)
T ss_pred HHH--Hhhcc-CCccccccccccceEEEeccchhhhhhhcccc
Confidence 222 78898 77778888888899999988765544443244
No 463
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=53.14 E-value=24 Score=21.03 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=16.7
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 017601 336 NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 336 d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.+..|+.++.||.++..|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 567899999999999999864
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=52.33 E-value=2e+02 Score=26.71 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCcceeeeccCCCCCCCCcEEEEEcCCeEEEEeCCcccCCceeeee---eccCCCcEEEEEECCC----Cc-EEEEeCC-
Q 017601 191 YPSSLNFVQNLSPVNGGPNMLAVTEGCQLTIWDLRMKENGGCLHRI---CGSVGDILYAVCSSST----GN-IAVAGAD- 261 (369)
Q Consensus 191 ~~~~v~~~~~~~~~~~~~~lla~s~d~~v~iwD~~~~~~~~~~~~~---~~~~~~~v~~v~~sp~----g~-lasgs~D- 261 (369)
.|..+.+.+ + +.++.+-..|.|++++ ..+.....+..+ ..........++|+|+ ++ .++-+..
T Consensus 3 ~P~~~a~~p------d-G~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLP------D-GRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEET------T-SCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeC------C-CcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 445566654 4 4666667799999999 333211122222 1111467899999995 53 3332311
Q ss_pred -------CcEEEEeCCCc-------ee-eeeccc--cccCceEEEEEcCCCCCEEEEEECCCe
Q 017601 262 -------RTVTIYDPRRW-------SA-LSRWVH--CSKYEITGLSFSSIDSNYIYVQGVDYE 307 (369)
Q Consensus 262 -------~~v~vwD~~~~-------~~-~~~~~~--h~~~~v~~l~~sp~d~~~l~s~s~D~~ 307 (369)
..|.-|..... +. +..+.. .....-..|.|.| |+.+.++.+..+.
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTT
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCC
Confidence 12332332221 11 112222 1023456799999 9988777765544
No 465
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.25 E-value=91 Score=22.81 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=27.4
Q ss_pred EEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 257 VAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 257 sgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
.+..+|.+--||+++++..--+.+= .--+.|+++| |+..++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~-d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSP-DESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-T-TSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCC--CccCeEEEcC-CCCEEEEE
Confidence 3455677888999987654444432 3468999999 99976665
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.45 E-value=2.4e+02 Score=27.10 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=41.1
Q ss_pred CcEEEEEECCCCcEEEEeCCCcEEEEeCC--CceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 242 DILYAVCSSSTGNIAVAGADRTVTIYDPR--RWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 242 ~~v~~v~~sp~g~lasgs~D~~v~vwD~~--~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
..++++.|.+++.+..++..|.+....-. +++....-..- ....+.+.|.+ +++.++ .+.+|.|.-|
T Consensus 328 ~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~-~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNI-AANLYSVKFFD-DKKGFV-LGNDGVLLRY 396 (398)
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCC-CcceeEEEEcC-CCceEE-EeCCcEEEEe
Confidence 45899999988866666678877665321 23332211222 45678999977 655554 4567776544
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=46.95 E-value=2.3e+02 Score=25.93 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=33.9
Q ss_pred CC-cEEEEeC-----CCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEECCC----eEEEEECcCCc
Q 017601 252 TG-NIAVAGA-----DRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDY----EVFCGQWRESS 317 (369)
Q Consensus 252 ~g-~lasgs~-----D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~----~i~vwd~~~~~ 317 (369)
++ .++.|+. ...+..||+++ ++.+..+... . ........- ++++.+.|+.++ .+.++|.++.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~-r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-P-RVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-C-CCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCe
Confidence 45 5566664 24688899876 4444433321 1 111122223 567777777664 34578877643
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=44.60 E-value=4e+02 Score=28.07 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=48.5
Q ss_pred eeeEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCcccccccc----CC--CCCCCCCCeeEEEECCCCceeEEEE
Q 017601 94 EVQSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVL----PQ--DCGVGEGSWSGLCFSPSQWSMAAVA 167 (369)
Q Consensus 94 ~V~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~l~~~p~~~~~~a~~ 167 (369)
..-+++|+|.. ...+|.+|..|+.-||++...... ....+.+. +. .......+|..+.|.++... ++++
T Consensus 147 ~~aDv~FnP~~---~~q~AiVD~~G~Wsvw~i~~~~~~-~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~-lLv~ 221 (765)
T PF10214_consen 147 PHADVAFNPWD---QRQFAIVDEKGNWSVWDIKGRPKR-KSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNR-LLVC 221 (765)
T ss_pred ccceEEeccCc---cceEEEEeccCcEEEEEecccccc-CCcceeeccCCCccccCCCcccCcceeeEecCCCCE-EEEE
Confidence 44589999874 469999999999999999322110 00011110 10 00111246889999885444 4544
Q ss_pred ecccceEEEEeCCc
Q 017601 168 RSFSKSIDVYDQDI 181 (369)
Q Consensus 168 ~s~d~~i~lwd~~~ 181 (369)
....+.++|++.
T Consensus 222 --~r~~l~~~d~~~ 233 (765)
T PF10214_consen 222 --NRSKLMLIDFES 233 (765)
T ss_pred --cCCceEEEECCC
Confidence 356788888763
No 469
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=44.50 E-value=1.2e+02 Score=22.05 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCEEEEEE-CCCeEEEEECcC
Q 017601 284 YEITGLSFSSIDSNYIYVQG-VDYEVFCGQWRE 315 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s-~D~~i~vwd~~~ 315 (369)
..-+.+.++| ++++|..++ ..+.|+++..+.
T Consensus 54 ~~aNGI~~s~-~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISP-DKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcC-CCCEEEEEeccCCeEEEEEecC
Confidence 3458899999 888877665 578999987653
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=43.50 E-value=3.3e+02 Score=26.70 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred eEEEEeecCCCCceEEEEEecCCcEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCC-----ceeEEEEec-
Q 017601 96 QSIALAETDSSGYMVLGSVDSYGHLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQ-----WSMAAVARS- 169 (369)
Q Consensus 96 ~~l~~s~~~~~~~~~las~d~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-----~~~~a~~~s- 169 (369)
+.|+|.||+ .++++--..|+|++++...... .....+.......+++|..+|+|+|+- ...|.++ .
T Consensus 33 w~maflPDG----~llVtER~~G~I~~v~~~~~~~---~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs-yt 104 (454)
T TIGR03606 33 WALLWGPDN----QLWVTERATGKILRVNPETGEV---KVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS-YT 104 (454)
T ss_pred eEEEEcCCC----eEEEEEecCCEEEEEeCCCCce---eeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE-Ee
Q ss_pred ---------ccceEEEEeCCcc------eEEEEeeeCCcceeeeccCCCCCCCCcEEEEEcCC
Q 017601 170 ---------FSKSIDVYDQDIH------LRTLRTLWYPSSLNFVQNLSPVNGGPNMLAVTEGC 217 (369)
Q Consensus 170 ---------~d~~i~lwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~lla~s~d~ 217 (369)
....|.-|..... .+.+-.........+-....|+||+..+++.++.+
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 471
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=42.71 E-value=1.1e+02 Score=22.20 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=29.7
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cE-EEEeCCCcEEEEeCC
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NI-AVAGADRTVTIYDPR 270 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~l-asgs~D~~v~vwD~~ 270 (369)
+.|-.||.+.. +. ...+- ...+.|.++|++ .| ++....+.|.+|..+
T Consensus 36 ~~Vvyyd~~~~---~~--va~g~--~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEV---KV--VASGF--SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEe---EE--eeccC--CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35666775432 21 12222 556789999998 44 555668899999865
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=42.28 E-value=2.8e+02 Score=25.51 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=63.8
Q ss_pred cEEEEEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCCcEEEEeCCC---ceeeeeccccccC
Q 017601 209 NMLAVTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADRTVTIYDPRR---WSALSRWVHCSKY 284 (369)
Q Consensus 209 ~lla~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~---~~~~~~~~~h~~~ 284 (369)
....+-++.-++|.|+.+.++...+..+... +--+++.. .| +..++..|.-.-+.|+.+ .+....+... ..
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~-~~ 172 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GG 172 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CC
Confidence 4444456678999999988654444444432 44455554 46 666666566667778776 3334444444 44
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
....++.|- ++-..+..|+-+.+-|+..
T Consensus 173 d~~~v~ISG---n~AYvA~~d~GL~ivDVSn 200 (370)
T COG5276 173 DTHDVAISG---NYAYVAWRDGGLTIVDVSN 200 (370)
T ss_pred CceeEEEec---CeEEEEEeCCCeEEEEccC
Confidence 445677655 6777778999999999976
No 473
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=42.27 E-value=80 Score=27.98 Aligned_cols=88 Identities=14% Similarity=0.021 Sum_probs=49.8
Q ss_pred EEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEEC-C--CeEEEEECcC---CceeEEE---EcCCCeee-eeEc
Q 017601 265 TIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGV-D--YEVFCGQWRE---SSKVFAF---RGDSNWLG-FSKC 334 (369)
Q Consensus 265 ~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~-D--~~i~vwd~~~---~~~~~~~---~g~~~~~~-~~~~ 334 (369)
.+||+.+++...--... .--+.+-.|-| ||++|.+|+. | ..+++++... ....... ....||-. ...+
T Consensus 49 ~~yD~~tn~~rpl~v~t-d~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQT-DTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEEeccCCC-CCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 57898876543211112 23344456778 9999999875 3 3588888644 1111111 12345543 3337
Q ss_pred CCCCEEEEEeCCC-cEEEEEC
Q 017601 335 SNRDVLGGWSDSG-SIFVADV 354 (369)
Q Consensus 335 ~d~~~l~sgs~dg-~I~iWd~ 354 (369)
+||+.|+.|+.+. +..+|.-
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCCEEEEeCcCCCcccccCC
Confidence 7999988777764 4455554
No 474
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=42.23 E-value=45 Score=19.64 Aligned_cols=26 Identities=15% Similarity=0.186 Sum_probs=20.7
Q ss_pred cEEEEeCCCcEEEEeCCCceeeeecc
Q 017601 254 NIAVAGADRTVTIYDPRRWSALSRWV 279 (369)
Q Consensus 254 ~lasgs~D~~v~vwD~~~~~~~~~~~ 279 (369)
.+..++.||.|.-.|.++|+.+-.+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35666899999999999998876554
No 475
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=41.75 E-value=65 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.048 Sum_probs=23.3
Q ss_pred cCCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEE
Q 017601 215 EGCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAV 257 (369)
Q Consensus 215 ~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~las 257 (369)
.+|.+.-||.+++ +..--+.+- ...+.|++++|+ .++.
T Consensus 35 ~~GRll~ydp~t~---~~~vl~~~L--~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 35 PTGRLLRYDPSTK---ETTVLLDGL--YFPNGVALSPDESFVLV 73 (89)
T ss_dssp --EEEEEEETTTT---EEEEEEEEE--SSEEEEEE-TTSSEEEE
T ss_pred CCcCEEEEECCCC---eEEEehhCC--CccCeEEEcCCCCEEEE
Confidence 3578889999987 322222232 567899999999 4433
No 476
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.22 E-value=4.4e+02 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=25.4
Q ss_pred cCCCeeeeeEcCCCCEEEEEeCCCcEEEEECCCCc
Q 017601 324 GDSNWLGFSKCSNRDVLGGWSDSGSIFVADVVAKE 358 (369)
Q Consensus 324 g~~~~~~~~~~~d~~~l~sgs~dg~I~iWd~~~~~ 358 (369)
.|+.|..+..+++.++|+--.++|.|.+-+....+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 45656666667788888888888888877665443
No 477
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=40.49 E-value=1.2e+02 Score=27.83 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=68.7
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCc---eE--EEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYE---IT--GLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~---v~--~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
-.|++|...++| +|++.-.-.+|.+.|.++++.+-.+.|. ... .. ..++-. |.+.+-.+..+++|.++|=..
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~-~~~df~~~~~~f~~QH-dar~~~~~~~~~~IslFDN~~ 221 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK-RNSDFTLPATNFSWQH-DARFLNESNDDGTISLFDNAN 221 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC-CCCcccccCCcEeecc-CCEEeccCCCCCEEEEEcCCC
Confidence 458889888888 9999888889999999998888777654 221 11 133322 555555556677788887621
Q ss_pred ----------C------------ceeEEEEcCC-----Cee-eeeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 316 ----------S------------SKVFAFRGDS-----NWL-GFSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 316 ----------~------------~~~~~~~g~~-----~~~-~~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+ ..++.+..+. .+. +...+++|..|++-+..+.+.=++.
T Consensus 222 ~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~ 288 (299)
T PF14269_consen 222 SDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTP 288 (299)
T ss_pred CCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECC
Confidence 0 1222222111 001 1122558999999998888765543
No 478
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.37 E-value=1.8e+02 Score=25.20 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=36.6
Q ss_pred EEEECCCC-cEEEEeCCCcEEEEeCCC--ceeeeeccccccCceEEEEEcCCCCCEEEEEE
Q 017601 246 AVCSSSTG-NIAVAGADRTVTIYDPRR--WSALSRWVHCSKYEITGLSFSSIDSNYIYVQG 303 (369)
Q Consensus 246 ~v~~sp~g-~lasgs~D~~v~vwD~~~--~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s 303 (369)
.++-++.+ ++++ .....|.+||+.. .+++.++.. -+.|..+.++. .|++|++-=
T Consensus 22 ~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~-~GDYlvTlE 78 (215)
T PF14761_consen 22 AVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSE-AGDYLVTLE 78 (215)
T ss_pred eeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcc--hhheeEEEecc-ccceEEEEE
Confidence 34444434 3333 4456799999883 445556654 37899999999 999999853
No 479
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=40.15 E-value=3e+02 Score=25.37 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=45.8
Q ss_pred EEEeCCCcEEEEeCCCceeeeecc--ccccCceEEEEEcCC-----CCCEEEEEECCCeEEEEECcCCceeEEEEc
Q 017601 256 AVAGADRTVTIYDPRRWSALSRWV--HCSKYEITGLSFSSI-----DSNYIYVQGVDYEVFCGQWRESSKVFAFRG 324 (369)
Q Consensus 256 asgs~D~~v~vwD~~~~~~~~~~~--~h~~~~v~~l~~sp~-----d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g 324 (369)
+.|..-|.|.+||+. +..++.+. +. -..-+.++..|. .+.+|+--=-|++|..+|..+++.+-.+..
T Consensus 216 v~G~G~G~VdvFd~~-G~l~~r~as~g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 216 VAGAGLGYVNVFTLN-GQLLRRVASSGR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred ccCCCcceEEEEcCC-CcEEEEeccCCc-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 344456789999964 77777663 33 334466666552 466777666699999999998877666654
No 480
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=39.45 E-value=3.5e+02 Score=25.84 Aligned_cols=134 Identities=15% Similarity=0.036 Sum_probs=65.7
Q ss_pred eEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEe---CCCc-EEEEeCCC-ceeeeeccccccC-ceEEE
Q 017601 218 QLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAG---ADRT-VTIYDPRR-WSALSRWVHCSKY-EITGL 289 (369)
Q Consensus 218 ~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs---~D~~-v~vwD~~~-~~~~~~~~~h~~~-~v~~l 289 (369)
.|.--|++++ +....+.. ...+.-+-|||.. +|+-|. .|.. -+||=+++ +.....+..|... .+..=
T Consensus 169 ~i~~idl~tG---~~~~v~~~--~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 169 RIFTIDLKTG---ERKVVFED--TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp EEEEEETTT-----EEEEEEE--SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred eEEEEECCCC---ceeEEEec--CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 4555677776 33323333 3677788899988 555544 3442 47786655 4444444433122 34445
Q ss_pred EEcCCCCCEEEEEE-----CCCeEEEEECcCCceeEEEEcCCCeeeeeEcCCCCEEEEEeCCC----------------c
Q 017601 290 SFSSIDSNYIYVQG-----VDYEVFCGQWRESSKVFAFRGDSNWLGFSKCSNRDVLGGWSDSG----------------S 348 (369)
Q Consensus 290 ~~sp~d~~~l~s~s-----~D~~i~vwd~~~~~~~~~~~g~~~~~~~~~~~d~~~l~sgs~dg----------------~ 348 (369)
-|.| ||..|.--+ .+..|.-.|+.+++......... ...+...+||++++.=+.|. -
T Consensus 244 fw~~-DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 244 FWVP-DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EE-T-TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-------------------E
T ss_pred cccC-CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 6788 888765433 35567777888765443332221 13344466888887555442 5
Q ss_pred EEEEECCCCc
Q 017601 349 IFVADVVAKE 358 (369)
Q Consensus 349 I~iWd~~~~~ 358 (369)
|++++++.++
T Consensus 322 i~~~~~~~~~ 331 (386)
T PF14583_consen 322 IYLFDVEAGR 331 (386)
T ss_dssp EEEEETTTTE
T ss_pred EEEeccccCc
Confidence 5677877654
No 481
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=2.7e+02 Score=24.24 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=68.5
Q ss_pred cEEEEEc--CCeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC--cEEEEeCCCcEEEEeCCCceeeeeccccccC
Q 017601 209 NMLAVTE--GCQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG--NIAVAGADRTVTIYDPRRWSALSRWVHCSKY 284 (369)
Q Consensus 209 ~lla~s~--d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g--~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~ 284 (369)
.+.+.+- ...|+.||++++ +.+...... ...+..=-...-| ..+-.=.||....+|.++.+.+..+.-. +
T Consensus 58 i~esTG~yg~S~ir~~~L~~g---q~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~--G 131 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTG---QEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE--G 131 (262)
T ss_pred EEEeccccccceeEEEeccCc---eEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC--C
Confidence 3444442 458999999987 544332211 0111110000111 1222234777788999988877765522 3
Q ss_pred ceEEEEEcCCCCCEEEEEECCCeEEEEECcCCc----eeEEEEcCCCeeeeeEc-----CCCCEEEEEeCCCcEEEEECC
Q 017601 285 EITGLSFSSIDSNYIYVQGVDYEVFCGQWRESS----KVFAFRGDSNWLGFSKC-----SNRDVLGGWSDSGSIFVADVV 355 (369)
Q Consensus 285 ~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~----~~~~~~g~~~~~~~~~~-----~d~~~l~sgs~dg~I~iWd~~ 355 (369)
+=..+.- |+.-|+.+....+++.=|.++-. ..-++.| ..+... -||.+.|-.=.+..|..-|..
T Consensus 132 eGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g----~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 132 EGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG----VPVSKLNELEWVDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred cceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECC----eecccccceeeeccEEEEeeeeecceEEEcCC
Confidence 3344442 44556555555577776766522 2222322 222222 266666655555555555555
Q ss_pred CCc
Q 017601 356 AKE 358 (369)
Q Consensus 356 ~~~ 358 (369)
+|+
T Consensus 205 sGr 207 (262)
T COG3823 205 SGR 207 (262)
T ss_pred CCc
Confidence 554
No 482
>PRK10115 protease 2; Provisional
Probab=37.64 E-value=4.9e+02 Score=27.04 Aligned_cols=240 Identities=8% Similarity=0.058 Sum_probs=108.3
Q ss_pred ceeeEEEEeecCCCCceEEEEEecCC----cEEEEEecCCCCCCccccccccCCCCCCCCCCeeEEEECCCCceeEEEEe
Q 017601 93 SEVQSIALAETDSSGYMVLGSVDSYG----HLIVSKLDTSGKDVDRLTYSVLPQDCGVGEGSWSGLCFSPSQWSMAAVAR 168 (369)
Q Consensus 93 ~~V~~l~~s~~~~~~~~~las~d~~g----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~a~~~ 168 (369)
-.+..+.+|||+ ..+..+.|..| .+++-|+.++. .+.. .+. . .. ..++|.+++..++.+.
T Consensus 127 ~~l~~~~~Spdg---~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~---~i~----~---~~-~~~~w~~D~~~~~y~~- 190 (686)
T PRK10115 127 YTLGGMAITPDN---TIMALAEDFLSRRQYGIRFRNLETGN-WYPE---LLD----N---VE-PSFVWANDSWTFYYVR- 190 (686)
T ss_pred EEEeEEEECCCC---CEEEEEecCCCcEEEEEEEEECCCCC-CCCc---ccc----C---cc-eEEEEeeCCCEEEEEE-
Confidence 456678889885 35666667766 45666665431 1110 010 0 01 2589999766665554
Q ss_pred ccc-----ceEEEEeCCcce---EEEEeee-CCcceeeeccCCCCCCCCcEEE-EE--cCCeEEEEeCCcccCCceeeee
Q 017601 169 SFS-----KSIDVYDQDIHL---RTLRTLW-YPSSLNFVQNLSPVNGGPNMLA-VT--EGCQLTIWDLRMKENGGCLHRI 236 (369)
Q Consensus 169 s~d-----~~i~lwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~lla-~s--~d~~v~iwD~~~~~~~~~~~~~ 236 (369)
-.+ ..|..++++... ..+.... ....+.... ..++..++. +. .++.+.+|+..... ......+
T Consensus 191 ~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~----s~d~~~l~i~~~~~~~~~~~l~~~~~~~-~~~~~~~ 265 (686)
T PRK10115 191 KHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHK----TTSKHYVVIHLASATTSEVLLLDAELAD-AEPFVFL 265 (686)
T ss_pred ecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEE----cCCCCEEEEEEECCccccEEEEECcCCC-CCceEEE
Confidence 322 356666766431 1111111 111111111 124444443 22 25679999954321 1222222
Q ss_pred eccCCCcEEEEEECCCC--cEEEEe--CCCcEEEEeCCCceeeeeccccc-cCceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 237 CGSVGDILYAVCSSSTG--NIAVAG--ADRTVTIYDPRRWSALSRWVHCS-KYEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 237 ~~~~~~~v~~v~~sp~g--~lasgs--~D~~v~vwD~~~~~~~~~~~~h~-~~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
... ....+.+. +..+ ++.+-. ....|...++........+..+. ...|..+.++. + .++++...++.-+++
T Consensus 266 ~~~-~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~-~l~~~~~~~g~~~l~ 341 (686)
T PRK10115 266 PRR-KDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-D-WLVVEERQRGLTSLR 341 (686)
T ss_pred ECC-CCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-C-EEEEEEEeCCEEEEE
Confidence 222 23334333 3334 444422 22233334544211123333331 23677888874 3 556666667755554
Q ss_pred --ECcCCceeEEEE-cCCCeeeee-Ec--CC-CCEEEEEeC---CCcEEEEECCCCc
Q 017601 312 --QWRESSKVFAFR-GDSNWLGFS-KC--SN-RDVLGGWSD---SGSIFVADVVAKE 358 (369)
Q Consensus 312 --d~~~~~~~~~~~-g~~~~~~~~-~~--~d-~~~l~sgs~---dg~I~iWd~~~~~ 358 (369)
|...+ ....+. ......... .. .+ +.++++.+. -+.++.+|+.+++
T Consensus 342 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 342 QINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 44333 233332 211011111 11 22 345544443 3788888887764
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.65 E-value=4.2e+02 Score=26.04 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeeee------eE----------------cCCCCEEEEE
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLGF------SK----------------CSNRDVLGGW 343 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~~------~~----------------~~d~~~l~sg 343 (369)
++++.+.+.++.+++|+=.-..|...|.++++..-.+..+..|..- .. -.-|+.-+.-
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~ 352 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHL 352 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEE
Confidence 7899998855555555544558999998888888888766655321 11 0135556666
Q ss_pred eCCC---cEEEEECCCC
Q 017601 344 SDSG---SIFVADVVAK 357 (369)
Q Consensus 344 s~dg---~I~iWd~~~~ 357 (369)
-.+| .|.++|=...
T Consensus 353 ~~~g~~~~l~vFDNg~~ 369 (477)
T PF05935_consen 353 IPDGPQGNLLVFDNGNG 369 (477)
T ss_dssp -TTS---SEEEEE--TT
T ss_pred cCCCCeEEEEEEECCCC
Confidence 7777 8888885544
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.90 E-value=1.2e+02 Score=27.58 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEE------CCCeEEEEECcCCc
Q 017601 261 DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQG------VDYEVFCGQWRESS 317 (369)
Q Consensus 261 D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s------~D~~i~vwd~~~~~ 317 (369)
-..|++||..+.+-..--.+ +.+.|+++.|.. +.++++.|. ....+..||+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 45689999876544433333 377899999986 666777665 35578889987753
No 485
>PLN02193 nitrile-specifier protein
Probab=35.76 E-value=4.3e+02 Score=25.86 Aligned_cols=103 Identities=11% Similarity=-0.038 Sum_probs=50.9
Q ss_pred CC-cEEEEeCCC-----cEEEEeCCCce--eeeec---cccccCceEEEEEcCCCCCEEEEEECC----CeEEEEECcCC
Q 017601 252 TG-NIAVAGADR-----TVTIYDPRRWS--ALSRW---VHCSKYEITGLSFSSIDSNYIYVQGVD----YEVFCGQWRES 316 (369)
Q Consensus 252 ~g-~lasgs~D~-----~v~vwD~~~~~--~~~~~---~~h~~~~v~~l~~sp~d~~~l~s~s~D----~~i~vwd~~~~ 316 (369)
++ +++.|+.++ .+..||+.+.+ .+... ... ...-..+.+ ++++++.++.+ ..+.++|+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSI-RGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCC-CCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence 45 666676543 46788887643 22211 111 111122222 55677777755 46888998875
Q ss_pred ceeEEEE-c---CCCeeeeeEcCCCCEEEEEeCC--------------CcEEEEECCCCc
Q 017601 317 SKVFAFR-G---DSNWLGFSKCSNRDVLGGWSDS--------------GSIFVADVVAKE 358 (369)
Q Consensus 317 ~~~~~~~-g---~~~~~~~~~~~d~~~l~sgs~d--------------g~I~iWd~~~~~ 358 (369)
+-...-. + ..+........++.+++.|+.+ ..+.++|..+.+
T Consensus 354 ~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 354 KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 4332211 1 0110100111256666666643 247788877653
No 486
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=35.12 E-value=99 Score=31.99 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=39.6
Q ss_pred CcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEE
Q 017601 242 DILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQ 312 (369)
Q Consensus 242 ~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd 312 (369)
..+.++.-+|.| .++.++.||+|.+|+.-.......+.. ..+-..+.|.. . -|++...|+++.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--~~p~~nlv~tn-h--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--AKPKENLVFTN-H--GLVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--cCCccceeeec-c--ceEEEeccchhheee
Confidence 557778888999 999999999999998644322211111 12233444544 2 244455566555553
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=34.79 E-value=1.2e+02 Score=31.36 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=28.2
Q ss_pred cCceEEEEEcCCCCCEEEEEECCCeEEEEECcCC
Q 017601 283 KYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRES 316 (369)
Q Consensus 283 ~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~ 316 (369)
...++++.-+| .++-+++++.|+.|+++++.+.
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeeccc
Confidence 34578888889 8999999999999999998653
No 488
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=34.74 E-value=3.1e+02 Score=25.08 Aligned_cols=84 Identities=14% Similarity=0.268 Sum_probs=38.9
Q ss_pred CeEEEEeCCcccCCceeeeeeccCCCcEEEEEECCCC-cEEEEeCCC----cEEEEeCCC--ceeeeecc-ccccC---c
Q 017601 217 CQLTIWDLRMKENGGCLHRICGSVGDILYAVCSSSTG-NIAVAGADR----TVTIYDPRR--WSALSRWV-HCSKY---E 285 (369)
Q Consensus 217 ~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~lasgs~D~----~v~vwD~~~--~~~~~~~~-~h~~~---~ 285 (369)
..+..||+++.+ ...+..+... ......+...++ +++.|+.++ .+.+||+++ ++.+.... +.... .
T Consensus 139 ~~v~~yd~~~~~-W~~~~~~p~~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~ 215 (323)
T TIGR03548 139 NKSYLFNLETQE-WFELPDFPGE--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLG 215 (323)
T ss_pred ceEEEEcCCCCC-eeECCCCCCC--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence 367888887651 1112212111 111122223356 667777654 356889876 44443321 11011 1
Q ss_pred eEEEEEcCCCCCEEEEEECC
Q 017601 286 ITGLSFSSIDSNYIYVQGVD 305 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D 305 (369)
..++.. . ++.+++.|+.+
T Consensus 216 ~~~~~~-~-~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKI-N-ESLLLCIGGFN 233 (323)
T ss_pred eeEEEE-C-CCEEEEECCcC
Confidence 112222 2 56777888876
No 489
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=33.98 E-value=87 Score=17.29 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCCEEEEEECCCeEEEE
Q 017601 284 YEITGLSFSSIDSNYIYVQGVDYEVFCG 311 (369)
Q Consensus 284 ~~v~~l~~sp~d~~~l~s~s~D~~i~vw 311 (369)
..|.+++.++ ++++.+..-+.+|+|
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEec
Confidence 3578888877 688888777889887
No 490
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=32.19 E-value=4.1e+02 Score=24.51 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=35.9
Q ss_pred CCcEEEEEECCCC-cEEEEeC-----CC--c-------EEE--EeCCC-ceeee----eccc-----cccCceEEEEEcC
Q 017601 241 GDILYAVCSSSTG-NIAVAGA-----DR--T-------VTI--YDPRR-WSALS----RWVH-----CSKYEITGLSFSS 293 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~-----D~--~-------v~v--wD~~~-~~~~~----~~~~-----h~~~~v~~l~~sp 293 (369)
...+-+++++|+| .|.++.+ |+ . +++ ||..+ +.+.. .+.. . ...|+.+.+-+
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~-~~~isd~~al~ 224 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPG-DNGISDIAALP 224 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccC-CCCceeEEEEC
Confidence 3668899999999 5665543 22 1 444 55554 32222 2222 2 45788888888
Q ss_pred CCCCEEEE
Q 017601 294 IDSNYIYV 301 (369)
Q Consensus 294 ~d~~~l~s 301 (369)
++++|+-
T Consensus 225 -d~~lLvL 231 (326)
T PF13449_consen 225 -DGRLLVL 231 (326)
T ss_pred -CCcEEEE
Confidence 8876664
No 491
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=30.26 E-value=3.8e+02 Score=23.60 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=50.0
Q ss_pred CCcEEEEEECCCC-cEEEEeCCCcEEEEeCCCceeee----eccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 241 GDILYAVCSSSTG-NIAVAGADRTVTIYDPRRWSALS----RWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 241 ~~~v~~v~~sp~g-~lasgs~D~~v~vwD~~~~~~~~----~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
...+-.|.|-|.. .|..-+.++.|+..|..++.... .+...+...-..+.|+| --..|=..|.++.=.-.+..+
T Consensus 26 ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP-~aDRlRvvs~~GqNlR~npdt 104 (236)
T PF14339_consen 26 GESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNP-AADRLRVVSNTGQNLRLNPDT 104 (236)
T ss_pred CCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCc-ccCcEEEEccCCcEEEECCCC
Confidence 4788999999987 66666778889999999876432 23333345578899999 444444444455433345555
Q ss_pred Cc
Q 017601 316 SS 317 (369)
Q Consensus 316 ~~ 317 (369)
+.
T Consensus 105 Ga 106 (236)
T PF14339_consen 105 GA 106 (236)
T ss_pred CC
Confidence 43
No 492
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.00 E-value=1e+02 Score=16.77 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=11.0
Q ss_pred EEEEECCCC-cEEEEeCCCcEEE
Q 017601 245 YAVCSSSTG-NIAVAGADRTVTI 266 (369)
Q Consensus 245 ~~v~~sp~g-~lasgs~D~~v~v 266 (369)
..++++++| .+++=.....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 456666666 4444444444443
No 493
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=28.39 E-value=1.2e+02 Score=30.33 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=35.7
Q ss_pred EEEECCCC--cEEEEeC-----CCcEEEE-----eCCCceeeeeccccccCceEEEEEcCCCCCEEEEE
Q 017601 246 AVCSSSTG--NIAVAGA-----DRTVTIY-----DPRRWSALSRWVHCSKYEITGLSFSSIDSNYIYVQ 302 (369)
Q Consensus 246 ~v~~sp~g--~lasgs~-----D~~v~vw-----D~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~s~ 302 (369)
-|+|.|.| ++.+=+. +...-+| |..+++...-+.+....+++..+|+| |++.|..+
T Consensus 504 nl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~Fsp-D~~TlFV~ 571 (616)
T COG3211 504 NLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSP-DGKTLFVN 571 (616)
T ss_pred ceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCC-CCceEEEE
Confidence 46788888 5555222 2234456 34445555555554367999999999 88876654
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.22 E-value=3e+02 Score=23.96 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=52.2
Q ss_pred cEEEEeC--CCcEEEEeCCCceeeeeccccccCceEEEEEcCCCCCEEE-EEECCCeEEEEECcCCceeEEE--EcCCCe
Q 017601 254 NIAVAGA--DRTVTIYDPRRWSALSRWVHCSKYEITGLSFSSIDSNYIY-VQGVDYEVFCGQWRESSKVFAF--RGDSNW 328 (369)
Q Consensus 254 ~lasgs~--D~~v~vwD~~~~~~~~~~~~h~~~~v~~l~~sp~d~~~l~-s~s~D~~i~vwd~~~~~~~~~~--~g~~~~ 328 (369)
++.+.+. ...|++||+++++.+..-.-. .+.+..=-... -+.++. -.=.|+....+|.++-+++..| .|..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~-~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-- 133 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITK-LGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-- 133 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecC-Cccccccceee-ccceEEEEEeccceeEEEChHHhhhhcccccCCcc--
Confidence 4444443 336899999988776543322 12222211111 222222 2235777788888886665554 4544
Q ss_pred eeeeEcCCCCEEEEEeCCCcEEEEECCC
Q 017601 329 LGFSKCSNRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 329 ~~~~~~~d~~~l~sgs~dg~I~iWd~~~ 356 (369)
.++ +.|+.-|..++..-+++.=|.++
T Consensus 134 WgL--t~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WGL--TSDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eee--ecCCcceEeeCCceEEEecCHHH
Confidence 233 34666666666666666656544
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=28.09 E-value=2.7e+02 Score=29.25 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCCeeEEEECCCCceeEEEEecccceEEEEeCC-cceEEEEeee-------CCcceeee-----------------ccCC
Q 017601 148 EGSWSGLCFSPSQWSMAAVARSFSKSIDVYDQD-IHLRTLRTLW-------YPSSLNFV-----------------QNLS 202 (369)
Q Consensus 148 ~~~~~~l~~~p~~~~~~a~~~s~d~~i~lwd~~-~~~~~~~~~~-------~~~~v~~~-----------------~~~~ 202 (369)
+.|+...+||. +...+++- -.+.+|-+++.. ..+...+... ..-.+.|- +..|
T Consensus 112 ~nGIvaa~wS~-DE~~~cvv-t~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp 189 (1243)
T COG5290 112 SNGIVAASWSA-DEKTWCVV-TSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMP 189 (1243)
T ss_pred cCceEEEeecc-CCceEEEE-EcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCc
Q ss_pred CCCCCCcEEEEEcCCeEEEE--eCCcccCCceeeeeeccCCCcEEE------------------EEECCCC-cEEEEeCC
Q 017601 203 PVNGGPNMLAVTEGCQLTIW--DLRMKENGGCLHRICGSVGDILYA------------------VCSSSTG-NIAVAGAD 261 (369)
Q Consensus 203 ~~~~~~~lla~s~d~~v~iw--D~~~~~~~~~~~~~~~~~~~~v~~------------------v~~sp~g-~lasgs~D 261 (369)
+.-|.+.+.++-...++..| |..-..-+..-..-... -.|++ ++|-|+| .+|+-+.|
T Consensus 190 ~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra--~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td 267 (1243)
T COG5290 190 YMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRA--FRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTD 267 (1243)
T ss_pred ccccccceeEeeCCceEEEEccCcceeeecchhcccccc--eeeeccccccccccCCcccchhccccccCCceeeeeccC
Q ss_pred C-----cEEEEeCCCceeeeecc---ccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC
Q 017601 262 R-----TVTIYDPRRWSALSRWV---HCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE 315 (369)
Q Consensus 262 ~-----~v~vwD~~~~~~~~~~~---~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~ 315 (369)
| .|..+. |+|-.-..+. +. ...+..++|+- ....++.+ ..+.+++|-..+
T Consensus 268 ~~~~S~~ViFfE-rNGLrHGef~lr~~~-dEk~~~~~wn~-~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 268 GCSTSESVIFFE-RNGLRHGEFDLRVGC-DEKAFLENWNL-LSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred CCCCcceEEEEc-cCCcccCCccccCCc-hhhhhhhhhhH-HHHHHHHh-hcceEEEEEccc
No 496
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=27.36 E-value=2.9e+02 Score=25.27 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCCEEEEEECCCeEEEEECcCCceeEEEEcCCCeee-------eeEcCCCCEEEEEeCCCcEEEEEC
Q 017601 286 ITGLSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAFRGDSNWLG-------FSKCSNRDVLGGWSDSGSIFVADV 354 (369)
Q Consensus 286 v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~~g~~~~~~-------~~~~~d~~~l~sgs~dg~I~iWd~ 354 (369)
+++|...+ +|.+|+|.-.=.+|.+.|-++++.+=.+.|..+ .. +..-.|.+++-.+..+++|.++|=
T Consensus 146 iNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCCCC-CcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 78888888 899999988888999999888887777766521 11 111125556656667788888875
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.25 E-value=5.4e+02 Score=28.70 Aligned_cols=133 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred EEcCCeEEEEeCCcccCCceeeeeeccCCCcEEEEE--------ECCCC-cEEEEeCCCcEEEEeC----CCcee---e-
Q 017601 213 VTEGCQLTIWDLRMKENGGCLHRICGSVGDILYAVC--------SSSTG-NIAVAGADRTVTIYDP----RRWSA---L- 275 (369)
Q Consensus 213 ~s~d~~v~iwD~~~~~~~~~~~~~~~~~~~~v~~v~--------~sp~g-~lasgs~D~~v~vwD~----~~~~~---~- 275 (369)
.+-|+.+.+|+..++ ...+.+.+- ...|..|. |-|.= ++..-+.---|.|+-+ .++.. .
T Consensus 95 iTiDn~L~lWny~~~---~e~~~~d~~-shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESD---NELAEYDGL-SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EEeCCeEEEEEcCCC---Cccccccch-hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence 356889999999986 444444432 24444443 33333 2222222333444432 22111 0
Q ss_pred -eeccccccCceEEEEEcCCCCCEEEEEECCCeEEEEECcC--------Ccee----------------EEEE-cCCCee
Q 017601 276 -SRWVHCSKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWRE--------SSKV----------------FAFR-GDSNWL 329 (369)
Q Consensus 276 -~~~~~h~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~~--------~~~~----------------~~~~-g~~~~~ 329 (369)
.++.-. .-.|+++.... +|+.+.+|- |+ .+|.+-- .+|. ..+. .+. .
T Consensus 171 ~~~i~~d-g~~V~~I~~t~-nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~--d 243 (1311)
T KOG1900|consen 171 SFKISVD-GVSVNCITYTE-NGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK--D 243 (1311)
T ss_pred ceeeecC-CceEEEEEecc-CCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC--C
Confidence 111122 34688888666 888887764 55 5665421 1111 1111 112 1
Q ss_pred eeeEcC---CCCEEEEEeCCCcEEEEECCC
Q 017601 330 GFSKCS---NRDVLGGWSDSGSIFVADVVA 356 (369)
Q Consensus 330 ~~~~~~---d~~~l~sgs~dg~I~iWd~~~ 356 (369)
++.... ....+.+-++.|+|.+||+..
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccC
Confidence 222211 345788999999999999976
No 498
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=26.97 E-value=6.2e+02 Score=24.91 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=26.2
Q ss_pred EEEcCCCCCEEEEEECCCeEEEEECcCCceeEEE--Ec-----CCCeeeeeEcCCCCEEEEEe
Q 017601 289 LSFSSIDSNYIYVQGVDYEVFCGQWRESSKVFAF--RG-----DSNWLGFSKCSNRDVLGGWS 344 (369)
Q Consensus 289 l~~sp~d~~~l~s~s~D~~i~vwd~~~~~~~~~~--~g-----~~~~~~~~~~~d~~~l~sgs 344 (369)
+.+-+ +|.+++..+ ..++..|+. |+.+..+ .+ |+ .+...++|.+|+.+.
T Consensus 153 ~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HH---D~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHH---DIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S----EEE-TTS-EEEEEE
T ss_pred eeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCccccccc---ccEECCCCCEEEEEe
Confidence 56667 888876655 788888885 4443333 22 33 455577888888777
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=26.25 E-value=5.9e+02 Score=24.44 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCCcEEEEeCCCcEEEEeCCCce-----eeeecccc-ccCceEEEEEcCCCCCEEEEEECCCeEEEEECc
Q 017601 241 GDILYAVCSSSTGNIAVAGADRTVTIYDPRRWS-----ALSRWVHC-SKYEITGLSFSSIDSNYIYVQGVDYEVFCGQWR 314 (369)
Q Consensus 241 ~~~v~~v~~sp~g~lasgs~D~~v~vwD~~~~~-----~~~~~~~h-~~~~v~~l~~sp~d~~~l~s~s~D~~i~vwd~~ 314 (369)
...++++.|.+++.++..+.+|.+.. ....++ ........ ....++++.|.+ ++..+ .++..|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~~-a~G~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEAW-AAGGSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcC-CCcEE-EEECCCcEEEeC-C
Confidence 36789999999994444456676543 333332 22222211 024589999998 76655 455677776653 2
Q ss_pred CCceeEEEE-cC---CCeeeeeEcCCCCEEEEEeCCCcEEEE
Q 017601 315 ESSKVFAFR-GD---SNWLGFSKCSNRDVLGGWSDSGSIFVA 352 (369)
Q Consensus 315 ~~~~~~~~~-g~---~~~~~~~~~~d~~~l~sgs~dg~I~iW 352 (369)
.++.-.... +. .++..+... +.......+.+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~-~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFF-DDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEc-CCCceEEEeCCcEEEEe
Confidence 332211111 11 111223322 33444555677777655
No 500
>PLN02153 epithiospecifier protein
Probab=25.39 E-value=5.4e+02 Score=23.70 Aligned_cols=12 Identities=8% Similarity=-0.291 Sum_probs=8.3
Q ss_pred CeEEEEECcCCc
Q 017601 306 YEVFCGQWRESS 317 (369)
Q Consensus 306 ~~i~vwd~~~~~ 317 (369)
..+.++|..+.+
T Consensus 217 ~~v~~yd~~~~~ 228 (341)
T PLN02153 217 NAVQFFDPASGK 228 (341)
T ss_pred CceEEEEcCCCc
Confidence 357888887654
Done!