Query 017603
Match_columns 369
No_of_seqs 249 out of 2117
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00012 chlorophyll synthetas 100.0 3.3E-50 7.2E-55 396.6 34.3 323 21-345 20-345 (375)
2 PRK07566 bacteriochlorophyll/c 100.0 5.8E-42 1.3E-46 332.7 30.4 273 65-345 8-282 (314)
3 TIGR02056 ChlG chlorophyll syn 100.0 6.3E-42 1.4E-46 331.4 29.3 273 73-346 4-277 (306)
4 TIGR01476 chlor_syn_BchG bacte 100.0 4.2E-39 9E-44 308.7 27.9 259 85-350 1-259 (283)
5 PRK09573 (S)-2,3-di-O-geranylg 100.0 5.9E-38 1.3E-42 300.2 26.6 260 83-362 2-265 (279)
6 PRK12392 bacteriochlorophyll c 100.0 5.9E-37 1.3E-41 298.6 29.9 265 82-348 10-276 (331)
7 COG0109 CyoE Polyprenyltransfe 100.0 2.7E-38 5.9E-43 298.3 17.3 268 80-368 14-287 (304)
8 PRK12869 ubiA protoheme IX far 100.0 2.6E-36 5.7E-41 288.7 27.4 261 83-367 1-269 (279)
9 PRK13362 protoheme IX farnesyl 100.0 1.9E-36 4E-41 292.7 26.2 269 79-367 8-283 (306)
10 TIGR01475 ubiA_other putative 100.0 1.2E-36 2.6E-41 291.6 24.2 250 83-351 1-257 (282)
11 PRK12883 ubiA prenyltransferas 100.0 2.9E-36 6.2E-41 288.2 26.7 255 83-356 2-257 (277)
12 PRK12874 ubiA prenyltransferas 100.0 2.7E-36 5.9E-41 289.8 25.5 249 82-348 6-263 (291)
13 PRK12884 ubiA prenyltransferas 100.0 4.6E-36 1E-40 287.0 26.7 258 82-358 2-262 (279)
14 PRK13387 1,4-dihydroxy-2-napht 100.0 1.4E-35 3E-40 288.0 28.8 250 83-345 2-281 (317)
15 PRK12882 ubiA prenyltransferas 100.0 7.8E-36 1.7E-40 285.1 26.3 255 82-352 2-258 (276)
16 PRK04375 protoheme IX farnesyl 100.0 9E-36 2E-40 287.3 26.6 265 79-366 5-277 (296)
17 PRK06080 1,4-dihydroxy-2-napht 100.0 2.6E-35 5.7E-40 283.7 29.3 252 83-346 2-261 (293)
18 PRK12886 ubiA prenyltransferas 100.0 2.1E-35 4.6E-40 283.7 28.0 247 82-348 6-258 (291)
19 PRK12847 ubiA 4-hydroxybenzoat 100.0 4.1E-35 8.9E-40 281.4 27.5 252 81-350 4-262 (285)
20 PRK12895 ubiA prenyltransferas 100.0 2.9E-35 6.3E-40 281.2 25.2 250 83-351 2-257 (286)
21 PRK12887 ubiA tocopherol phyty 100.0 6.6E-35 1.4E-39 282.2 26.8 259 81-350 10-283 (308)
22 PRK12888 ubiA prenyltransferas 100.0 8.2E-35 1.8E-39 278.7 26.0 252 83-352 1-259 (284)
23 PRK05951 ubiA prenyltransferas 100.0 1.5E-34 3.3E-39 278.7 27.8 221 82-313 2-232 (296)
24 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.3E-34 2.9E-39 277.4 27.0 253 82-354 3-263 (282)
25 TIGR01474 ubiA_proteo 4-hydrox 100.0 5.9E-35 1.3E-39 279.7 24.2 258 87-366 7-268 (281)
26 PRK12878 ubiA 4-hydroxybenzoat 100.0 7.8E-35 1.7E-39 282.4 24.9 211 82-304 28-245 (314)
27 TIGR01473 cyoE_ctaB protoheme 100.0 1.2E-34 2.6E-39 277.5 24.7 261 85-367 1-270 (280)
28 PRK12870 ubiA 4-hydroxybenzoat 100.0 2.4E-34 5.3E-39 276.4 25.2 204 82-302 7-217 (290)
29 PRK07419 1,4-dihydroxy-2-napht 100.0 1E-33 2.2E-38 272.9 29.2 253 79-345 7-266 (304)
30 PRK13595 ubiA prenyltransferas 100.0 7.1E-34 1.5E-38 270.4 25.4 261 80-360 8-269 (292)
31 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.8E-33 6E-38 265.0 28.6 271 81-363 5-286 (303)
32 PRK13106 ubiA prenyltransferas 100.0 1.1E-33 2.4E-38 272.3 25.9 210 80-307 11-232 (300)
33 PLN02922 prenyltransferase 100.0 7.6E-33 1.6E-37 268.3 29.7 255 78-345 9-281 (315)
34 TIGR00751 menA 1,4-dihydroxy-2 100.0 4.9E-33 1.1E-37 266.2 27.7 242 92-346 1-257 (284)
35 PRK12873 ubiA prenyltransferas 100.0 5.6E-33 1.2E-37 265.9 26.5 250 81-347 4-264 (294)
36 PLN02809 4-hydroxybenzoate non 100.0 5.5E-33 1.2E-37 266.5 26.2 250 82-350 4-263 (289)
37 PLN02776 prenyltransferase 100.0 6.8E-33 1.5E-37 269.1 25.5 253 90-367 1-263 (341)
38 TIGR02235 menA_cyano-plnt 1,4- 100.0 2.9E-32 6.2E-37 261.1 28.2 245 87-345 2-253 (285)
39 COG0382 UbiA 4-hydroxybenzoate 100.0 2.9E-32 6.3E-37 262.1 25.6 206 83-304 12-220 (289)
40 PRK12871 ubiA prenyltransferas 100.0 2.1E-31 4.6E-36 256.5 27.5 257 82-356 3-278 (297)
41 PRK12876 ubiA prenyltransferas 100.0 1.2E-31 2.5E-36 256.8 25.1 212 82-307 2-228 (300)
42 PRK13105 ubiA prenyltransferas 100.0 1.1E-29 2.4E-34 242.2 26.8 254 84-354 1-258 (282)
43 PRK12872 ubiA prenyltransferas 100.0 4E-29 8.8E-34 239.6 24.2 259 83-354 3-263 (285)
44 PLN02878 homogentisate phytylt 100.0 3.2E-28 7E-33 229.2 22.8 181 124-310 25-215 (280)
45 PRK12875 ubiA prenyltransferas 100.0 1.3E-26 2.9E-31 221.5 27.5 212 81-307 5-221 (282)
46 PF01040 UbiA: UbiA prenyltran 100.0 1.9E-27 4.2E-32 223.1 20.8 188 97-298 2-193 (257)
47 PRK08238 hypothetical protein; 99.9 9E-26 1.9E-30 230.1 24.3 235 33-284 135-377 (479)
48 KOG1380 Heme A farnesyltransfe 99.9 3.6E-27 7.8E-32 221.5 8.1 309 19-353 12-350 (409)
49 KOG1381 Para-hydroxybenzoate-p 99.9 3E-26 6.5E-31 210.8 12.8 208 81-302 61-275 (353)
50 PRK13592 ubiA prenyltransferas 99.9 2.1E-24 4.5E-29 204.9 21.7 198 130-348 54-268 (299)
51 PRK13591 ubiA prenyltransferas 99.9 9.1E-24 2E-28 202.1 25.1 176 131-320 67-249 (307)
52 PRK12324 phosphoribose diphosp 99.9 1.2E-21 2.7E-26 188.1 23.9 164 79-257 6-171 (295)
53 KOG4581 Predicted membrane pro 99.8 9.8E-20 2.1E-24 164.4 6.3 264 71-346 48-320 (359)
54 PRK12884 ubiA prenyltransferas 89.5 5.5 0.00012 37.9 11.9 36 257-293 43-78 (279)
55 TIGR02056 ChlG chlorophyll syn 89.5 4.3 9.3E-05 39.5 11.3 32 261-293 64-95 (306)
56 PLN00012 chlorophyll synthetas 88.3 5.8 0.00013 39.9 11.4 31 262-293 134-164 (375)
57 PRK13592 ubiA prenyltransferas 88.3 13 0.00029 36.1 13.4 50 253-303 48-100 (299)
58 PRK12872 ubiA prenyltransferas 88.2 2.1 4.6E-05 40.9 8.0 40 135-177 174-214 (285)
59 PRK13595 ubiA prenyltransferas 87.6 8.3 0.00018 37.4 11.6 23 263-285 59-81 (292)
60 PRK13591 ubiA prenyltransferas 86.9 1.7 3.8E-05 42.3 6.5 72 140-216 197-273 (307)
61 PF01040 UbiA: UbiA prenyltran 86.4 8.5 0.00018 35.5 10.8 48 247-294 18-67 (257)
62 PRK12324 phosphoribose diphosp 85.9 9.6 0.00021 37.0 11.2 37 257-293 52-89 (295)
63 PRK12888 ubiA prenyltransferas 85.7 6.6 0.00014 37.8 9.9 34 130-163 167-201 (284)
64 COG0382 UbiA 4-hydroxybenzoate 85.4 14 0.00031 35.4 12.1 39 255-293 51-90 (289)
65 PRK12392 bacteriochlorophyll c 84.9 7.3 0.00016 38.4 10.0 30 133-162 191-221 (331)
66 PRK12882 ubiA prenyltransferas 84.5 17 0.00037 34.5 12.1 35 258-293 45-79 (276)
67 PRK12875 ubiA prenyltransferas 83.9 11 0.00024 36.3 10.5 53 130-185 173-226 (282)
68 PRK12874 ubiA prenyltransferas 83.6 12 0.00025 36.2 10.6 33 131-163 176-209 (291)
69 PRK07419 1,4-dihydroxy-2-napht 83.6 7.3 0.00016 38.0 9.2 26 134-159 186-212 (304)
70 PRK12883 ubiA prenyltransferas 82.9 13 0.00029 35.3 10.6 33 260-293 46-78 (277)
71 PRK07566 bacteriochlorophyll/c 82.9 10 0.00022 37.0 9.9 38 263-301 77-117 (314)
72 PLN02809 4-hydroxybenzoate non 82.6 20 0.00044 34.6 11.8 34 260-293 54-88 (289)
73 TIGR01476 chlor_syn_BchG bacte 81.8 7.3 0.00016 37.2 8.4 29 135-163 174-203 (283)
74 PRK12871 ubiA prenyltransferas 81.6 5.9 0.00013 38.4 7.7 31 133-163 186-217 (297)
75 TIGR01474 ubiA_proteo 4-hydrox 81.4 7.7 0.00017 37.2 8.4 34 130-163 168-202 (281)
76 PRK04375 protoheme IX farnesyl 81.2 20 0.00044 34.5 11.3 53 248-300 40-97 (296)
77 PRK09573 (S)-2,3-di-O-geranylg 81.0 23 0.0005 33.8 11.5 43 258-301 44-89 (279)
78 PRK12887 ubiA tocopherol phyty 80.8 29 0.00064 33.8 12.3 23 270-293 72-94 (308)
79 TIGR02235 menA_cyano-plnt 1,4- 79.6 13 0.00029 35.8 9.4 39 134-175 173-212 (285)
80 PRK12869 ubiA protoheme IX far 79.6 24 0.00053 33.7 11.2 46 248-293 32-79 (279)
81 PRK13362 protoheme IX farnesyl 79.5 28 0.00061 33.9 11.7 47 247-293 42-90 (306)
82 PRK05951 ubiA prenyltransferas 79.2 30 0.00065 33.4 11.7 38 246-283 34-72 (296)
83 PRK12895 ubiA prenyltransferas 79.0 8.3 0.00018 37.2 7.8 36 128-163 165-201 (286)
84 PRK12848 ubiA 4-hydroxybenzoat 78.8 34 0.00073 32.7 11.9 33 261-293 52-85 (282)
85 PRK12847 ubiA 4-hydroxybenzoat 78.8 9.3 0.0002 36.6 8.1 33 131-163 174-207 (285)
86 TIGR01475 ubiA_other putative 78.7 11 0.00024 36.0 8.5 31 132-162 168-199 (282)
87 PRK12873 ubiA prenyltransferas 77.3 38 0.00083 32.9 11.8 34 260-293 53-87 (294)
88 PRK12870 ubiA 4-hydroxybenzoat 77.1 35 0.00076 32.9 11.5 47 247-293 41-89 (290)
89 PRK06080 1,4-dihydroxy-2-napht 77.1 15 0.00033 35.1 9.0 44 133-179 179-223 (293)
90 PRK13105 ubiA prenyltransferas 76.8 30 0.00066 33.3 10.9 20 269-288 52-71 (282)
91 COG1575 MenA 1,4-dihydroxy-2-n 75.9 24 0.00051 34.4 9.8 25 133-157 187-211 (303)
92 PRK12886 ubiA prenyltransferas 74.7 18 0.00039 35.0 8.8 31 133-163 173-204 (291)
93 TIGR01473 cyoE_ctaB protoheme 74.4 44 0.00094 31.9 11.3 44 258-301 42-89 (280)
94 PRK13106 ubiA prenyltransferas 73.8 9.8 0.00021 37.0 6.7 33 130-162 185-218 (300)
95 PRK13387 1,4-dihydroxy-2-napht 73.7 13 0.00029 36.3 7.7 39 134-175 201-240 (317)
96 PRK12878 ubiA 4-hydroxybenzoat 72.0 20 0.00042 35.1 8.4 34 130-163 200-234 (314)
97 COG3476 Tryptophan-rich sensor 71.2 74 0.0016 28.1 12.9 121 135-264 20-143 (161)
98 PRK08238 hypothetical protein; 69.5 42 0.00091 34.9 10.6 37 257-293 232-269 (479)
99 TIGR00751 menA 1,4-dihydroxy-2 69.4 31 0.00068 33.2 9.1 35 135-172 177-212 (284)
100 PLN02922 prenyltransferase 69.3 21 0.00045 35.0 7.9 36 134-172 200-236 (315)
101 PRK12876 ubiA prenyltransferas 55.1 73 0.0016 31.0 8.7 38 256-293 52-90 (300)
102 PLN02776 prenyltransferase 52.6 1.4E+02 0.003 29.7 10.3 35 259-293 37-72 (341)
103 PLN02878 homogentisate phytylt 30.9 2.7E+02 0.0058 26.9 8.2 27 136-162 170-197 (280)
104 KOG3146 Dolichyl pyrophosphate 27.9 2.3E+02 0.0049 26.3 6.7 38 209-249 142-179 (228)
105 TIGR03750 conj_TIGR03750 conju 25.5 2.2E+02 0.0047 23.6 5.7 36 150-187 6-41 (111)
106 COG0109 CyoE Polyprenyltransfe 23.7 7E+02 0.015 24.4 11.3 55 247-301 47-106 (304)
107 cd00867 Trans_IPPS Trans-Isopr 22.2 39 0.00084 30.8 0.8 36 262-297 157-202 (236)
108 PRK10581 geranyltranstransfera 21.6 50 0.0011 32.0 1.5 42 261-302 213-265 (299)
109 COG0142 IspA Geranylgeranyl py 21.5 94 0.002 30.4 3.4 65 231-296 175-250 (322)
No 1
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=3.3e-50 Score=396.62 Aligned_cols=323 Identities=76% Similarity=1.221 Sum_probs=270.9
Q ss_pred cccccCCCCccccccccccceecccCCCCCCCCCCCCCCc--CCCCCcchhhhhhccccccccchHHHHHhhhCccchHH
Q 017603 21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA--PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP 98 (369)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~k~yl~l~RP~~~~l 98 (369)
+.+++...++.+...++||+..+.++++..+++.+++++. +.|.++..||++|.||++.|++++|+|++++||++|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~ 99 (375)
T PLN00012 20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP 99 (375)
T ss_pred hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence 4445555667777788889999999999999999998886 45788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHH
Q 017603 99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 178 (369)
Q Consensus 99 ~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~ 178 (369)
.++++++|++..+.++|...++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.+
T Consensus 100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~ 179 (375)
T PLN00012 100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 179 (375)
T ss_pred HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence 99999999987777776543333345667778888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHH
Q 017603 179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258 (369)
Q Consensus 179 ~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~ 258 (369)
+++++++.+..+.++.++..+.+++++++++++||.||+++||++++||+++|..++.+|++++++++|.+++..+++++
T Consensus 180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal 259 (375)
T PLN00012 180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL 259 (375)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 88888877754443346777888888888899999999999999999999999999988887777788999999999999
Q ss_pred HHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHH
Q 017603 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLR 337 (369)
Q Consensus 259 ~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~ 337 (369)
++++|..++++.||++|+|+|+++|+||+||++|.+++++++...+.+..+.++.++... ....| ...+.+.+++++
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~--~~~~y~~~~~~l~l~~l~ 337 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAI--GKPYYALALLGLIIPQIF 337 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765555554444443321 22333 455666678888
Q ss_pred HHHHHHhc
Q 017603 338 CFAEVLFT 345 (369)
Q Consensus 338 ~~~~~~~~ 345 (369)
...+.+.+
T Consensus 338 ~~~~~~~~ 345 (375)
T PLN00012 338 FQFKYFLP 345 (375)
T ss_pred HHHHHHhc
Confidence 88887765
No 2
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=5.8e-42 Score=332.74 Aligned_cols=273 Identities=51% Similarity=0.817 Sum_probs=218.2
Q ss_pred CcchhhhhhccccccccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 017603 65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144 (369)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~ 144 (369)
.+.-||++|+|+++++++++|.|++++||+++..++++.+.|++.++.++|........++++++++.++++++|++|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~ 87 (314)
T PRK07566 8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY 87 (314)
T ss_pred ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999999988776655543111222344556677789999999999
Q ss_pred ccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccc
Q 017603 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW 224 (369)
Q Consensus 145 ~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~ 224 (369)
+|+|+|++|+|+||+++|++|+++++.++.++.++++++++.+ ++....+++++.+++++||.||+++||+++
T Consensus 88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~ 160 (314)
T PRK07566 88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW 160 (314)
T ss_pred hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 9999999999999999999999999999999999999888776 455677777888889999999999999998
Q ss_pred hhhHHHHHHHhHHHHHHHH-HHh-cCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603 225 IGNFALGASYISLPWWAGQ-ALF-GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 225 ~g~l~vg~~~g~lp~~~~~-a~~-g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
++|+++|+++|.+|++++. +.. +..++..++++++.++|..++++.||++|+|+|+++|+||+|+++|++++.+++..
T Consensus 161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~ 240 (314)
T PRK07566 161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV 240 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence 8999999999888866554 433 36788888888888999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603 303 AIDITQISVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFT 345 (369)
Q Consensus 303 ~~~l~~l~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (369)
++.+.++.++.+... .....++....++..+.++...+..++
T Consensus 241 l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~ 282 (314)
T PRK07566 241 VIDLFQLAVIALLLA-WGQPLYAAIVGLLLIPQITLQDRLLRD 282 (314)
T ss_pred HHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 766666554333222 112222223333445666666666543
No 3
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=6.3e-42 Score=331.39 Aligned_cols=273 Identities=72% Similarity=1.210 Sum_probs=221.7
Q ss_pred hccccc-cccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 017603 73 GIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA 151 (369)
Q Consensus 73 ~~~~~~-~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~ 151 (369)
++++.. ++++++|+|+|++||+++..+++++++|...+++++|...+....++++++++.++++++|++|||+|+|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~ 83 (306)
T TIGR02056 4 GIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDA 83 (306)
T ss_pred CcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhc
Confidence 344444 6678899999999999999999999999987777776532222224455566778899999999999999999
Q ss_pred cCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603 152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (369)
Q Consensus 152 ~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg 231 (369)
+|+|+||+++|++|+++++.++.++.++++++++++..+.+..++..+.+++++++.+++||.||+++||++++||+.+|
T Consensus 84 ~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 84 INEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALG 163 (306)
T ss_pred cCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHH
Confidence 99999999999999999999999999999999988765543335667888888888999999999999999988999999
Q ss_pred HHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603 232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (369)
Q Consensus 232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~ 311 (369)
+.++..|++++++++|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..++..+
T Consensus 164 ~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~ 243 (306)
T TIGR02056 164 ASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLI 243 (306)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHH
Confidence 99988888877777899999999999999999999999999999999999999999999999999998887666666555
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603 312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTD 346 (369)
Q Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (369)
+.++... ....+.....++.++.+++..+.++++
T Consensus 244 ~~~~~~~-~~~~~~~ll~ll~~p~~~~~~~~~~~~ 277 (306)
T TIGR02056 244 AAYLLAI-GENLYAAALVALIIPQITFQDKYFLKD 277 (306)
T ss_pred HHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4443322 222222233444577788877766543
No 4
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=4.2e-39 Score=308.70 Aligned_cols=259 Identities=43% Similarity=0.664 Sum_probs=203.5
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcccc
Q 017603 85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 164 (369)
Q Consensus 85 k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~i 164 (369)
|+|++++||+++..+++++++|.+.++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i 80 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII 80 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence 46899999999999999999999776321111112222345466678889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHH
Q 017603 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA 244 (369)
Q Consensus 165 s~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a 244 (369)
|+++++.++.++..+++++++.++ ++....+++++.+.+++||.||+++||++++||+.+|++++..|+.++++
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988774 33336677778888999999999999999889999999888888877665
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 017603 245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRISTR 324 (369)
Q Consensus 245 ~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~~ 324 (369)
+.+++++..++.+++.+++..++++.||++|+|+|+++|+||+|+++|+|++++++..++.+.++.++.+... ...+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~-~~~~~~ 233 (283)
T TIGR01476 155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLI-WGQPWV 233 (283)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHH
Confidence 6677888888888899999999999999999999999999999999999999998887666666555433322 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603 325 DSRPLTSDIDQLRCFAEVLFTDDSRN 350 (369)
Q Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (369)
.....++..|.++...+.++++.++.
T Consensus 234 ~~l~~ll~~p~~~~~~~~~~~~~~~~ 259 (283)
T TIGR01476 234 ATIVFLLLVAQIYNQIKLFLRDPQQN 259 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHh
Confidence 22233333666777777666543333
No 5
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=5.9e-38 Score=300.17 Aligned_cols=260 Identities=25% Similarity=0.308 Sum_probs=209.7
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~ 160 (369)
++|+|+|++||+++..+++|+++|++.+. .+++. .++..++++.++++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~ 75 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLK------GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIP 75 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchH------HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcC
Confidence 57999999999999999999999987763 22332 13344557778899999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (369)
Q Consensus 161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~ 240 (369)
+|++|+++++.++.++.++++.+++.+ |+.++.+++++.++.++||. ++||+++++|+++|..+|..++.
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~ 145 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIF 145 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888776 45577888888878899995 69999998999999999988888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017603 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIR 320 (369)
Q Consensus 241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~ 320 (369)
|+.+..+ ....++++...++|+.++++.||++|+|+|+++|+||+|+++|+|++.+++.....+..+. +.+....+
T Consensus 146 g~~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~--~~~~~~~~ 221 (279)
T PRK09573 146 GGLAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL--SPLPYFLG 221 (279)
T ss_pred HHHHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 8876655 3455667778889999999999999999999999999999999999988876544333222 22222222
Q ss_pred -hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhc
Q 017603 321 -ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKF 362 (369)
Q Consensus 321 -~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (369)
.+..| ...++++..+++..+++.++++++++++.++...+.+
T Consensus 222 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m 265 (279)
T PRK09573 222 IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIM 265 (279)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34556 5677778889999999999999988888766554433
No 6
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=5.9e-37 Score=298.60 Aligned_cols=265 Identities=32% Similarity=0.487 Sum_probs=199.9
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~ 160 (369)
.++|+|+|++||++++ .++|+++|.+.+ +............+.++++.+.+..+++|++|||+|+|+|++|+|.||++
T Consensus 10 ~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~ 88 (331)
T PRK12392 10 DKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIP 88 (331)
T ss_pred HHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCC
Confidence 4689999999998888 777777776554 32111111111112333444555667889999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHH
Q 017603 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (369)
Q Consensus 161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~-~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~ 239 (369)
+|++|+++++.++.++.++++++++++....+. ..+..+..++++.+++++||.||+++||+++.++..+|++++..++
T Consensus 89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~ 168 (331)
T PRK12392 89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITF 168 (331)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999887654321 1122334456777889999999999999998889999999998888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 017603 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI 319 (369)
Q Consensus 240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l 319 (369)
+++.+..|++++..++++...++|+.++++.||++|+|+|++.|+||+|+++|++++.++......++.+..+. .....
T Consensus 169 ~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~-~~~~~ 247 (331)
T PRK12392 169 LSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAW-LAWSW 247 (331)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 78878889899888888888999999999999999999999999999999999999988876654344433322 22222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603 320 RISTRDSRPLTSDIDQLRCFAEVLFTDDS 348 (369)
Q Consensus 320 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (369)
+.+..+...+++..+.++.+.+..|+|..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~q~~l~r~p~~ 276 (331)
T PRK12392 248 GFTVLMYFILVGLVLNIVIQIQLYRDPKG 276 (331)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 23333333444446678888888888743
No 7
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=298.33 Aligned_cols=268 Identities=22% Similarity=0.167 Sum_probs=221.0
Q ss_pred ccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCC
Q 017603 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR 157 (369)
Q Consensus 80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~R 157 (369)
.+.++|+|++++||+.+.+.+++.+.|++.+....... . .++...+++.+..+++|++|+|+|+|+|++|+ ++|
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~---~-l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP---L-LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH---H-HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 55689999999999999999999999998875321211 1 24555667778889999999999999999999 599
Q ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHHHhH
Q 017603 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (369)
Q Consensus 158 Pl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~ 236 (369)
|+++|+++|+|++.++.++.++|..+++++. |+....+++++++ ...+||. ++||++++ |+++|...|.
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~aGa 159 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFAGA 159 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecccc
Confidence 9999999999999999999999999886553 6777888877765 5899996 89999996 8999999999
Q ss_pred HHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603 237 LPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315 (369)
Q Consensus 237 lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l 315 (369)
.|. +||.+++|++++..+++++++|+|+..+...-.++-+||++++|++++|++.|++.+++..... .+.. ..++++
T Consensus 160 ~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y-~~~l-~~~sl~ 237 (304)
T COG0109 160 MPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLY-TLAL-APVSLL 237 (304)
T ss_pred ccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHH-HHHH-HHHHHH
Confidence 876 5778999999999999999999999888888888888999999999999999999998877653 3322 223333
Q ss_pred hhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCCC
Q 017603 316 PTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKLC 368 (369)
Q Consensus 316 ~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (369)
+...+ .+..| +...++++.+++..+++++++|++.+ +.||+||.+||+
T Consensus 238 ~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A-----~klF~~S~~yL~ 287 (304)
T COG0109 238 LALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWA-----RKLFKYSIIYLA 287 (304)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHHHH
Confidence 33343 35567 78888899999999999999666554 456999999986
No 8
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2.6e-36 Score=288.74 Aligned_cols=261 Identities=21% Similarity=0.221 Sum_probs=202.1
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP 158 (369)
++|+|+|++||++..+..+++++|++.+++ +++. .++..++++.++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 74 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP 74 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence 478999999999999999999999987632 3332 13345557778899999999999999999998 6999
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhcccchHHH-HHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603 159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTIF-WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (369)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~~gl~l~~~-l~~~~~~~~~~~~-~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~ 236 (369)
+|+|++|++|++.++.++.++|+.++++ + |+... .+++...++.+.||. ++||++++ |..+|...|.
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~ 143 (279)
T PRK12869 75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN 143 (279)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence 9999999999999999999999998887 4 44433 334444567889994 79999985 7777777777
Q ss_pred HHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603 237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315 (369)
Q Consensus 237 lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l 315 (369)
+|++ +|++++|++++..++++++.++|+.++.+.++++|+|||+++|+||+|+++|+|++.+++..+..+... + ..+
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~-~-~~~ 221 (279)
T PRK12869 144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIP-Y-ILL 221 (279)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHH-H-HHH
Confidence 7665 556788999999999999999999999988999999999999999999999999998776654433222 1 111
Q ss_pred hhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603 316 PTQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL 367 (369)
Q Consensus 316 ~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
......+..| ...++.+..+++.+.+++++++++.+ +.++|+|..|+
T Consensus 222 ~~~~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~f~~s~~~l 269 (279)
T PRK12869 222 LYLYYIGLIGLILVAILSAALMATSIRALLNPTKEEA-----WKMFKASSPYL 269 (279)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHhhCCChHHH-----HHHHHHHHHHH
Confidence 2112245666 55556677889999999988876543 34456655443
No 9
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.9e-36 Score=292.65 Aligned_cols=269 Identities=20% Similarity=0.134 Sum_probs=204.7
Q ss_pred cccchHHHHHhhhCccchHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
..++++|+|++++||+++..+.+++++|++.+ +.+++. .++..++++.++++++|++|||+|+|+|++|+
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~------~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt 81 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV------LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT 81 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence 33457899999999999999999999999776 333331 13334456777899999999999999999887
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS 233 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~ 233 (369)
++||+++|++|+++++.++.++..+|+.++..+. |+....++.++.+ +.++||. ++||++++++++.|..
T Consensus 82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~ 152 (306)
T PRK13362 82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLS 152 (306)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHH
Confidence 5899999999999999999999999988765542 4445555545443 5779994 6999999877665544
Q ss_pred HhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHH
Q 017603 234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAA 313 (369)
Q Consensus 234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~ 313 (369)
.+..|+.||.+++|++++..++++...++|+.++.+..+++|+|||+++|+||+|+++|+|++++....... .. ...+
T Consensus 153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~-~~-~~~s 230 (306)
T PRK13362 153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYIL-VF-ALVT 230 (306)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHH-HH-HHHH
Confidence 434345677888999999999999999999999999999999999999999999999999998876554322 21 1223
Q ss_pred HHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603 314 SLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL 367 (369)
Q Consensus 314 ~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
.+....+ .+..| ...+++++.+++..++++|++++++ + +-+.||++|..||
T Consensus 231 ~l~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~-~--~a~~~f~~S~~yl 283 (306)
T PRK13362 231 ALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDT-V--WARQLFGFSILTI 283 (306)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCch-H--HHHHHHHHHHHHH
Confidence 3332233 35666 5667778889999999998753221 1 2367899998876
No 10
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.2e-36 Score=291.60 Aligned_cols=250 Identities=24% Similarity=0.176 Sum_probs=195.1
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP 158 (369)
++|+|+|++||+........+++|++.+ +.+++. .++.+++++.++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP 74 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK------TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP 74 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence 4789999999999999988888898765 333432 13345557778899999999999999999995 7999
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (369)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp 238 (369)
+++|++|+++++.++.++.++++.++..+ |+....++.++.++.+.|+ .+||++++++++.|..++..+
T Consensus 75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~ 143 (282)
T TIGR01475 75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP 143 (282)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence 99999999999999888777777776665 4445666777777788998 599999999999999888777
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh
Q 017603 239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP 316 (369)
Q Consensus 239 ~~~~~a~~g~~~--~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~ 316 (369)
+++|.+++|+++ ...++++++.++|+.++++.|+++|+|+|+++|+||+|+++|+|++.+++..+..++.+..... .
T Consensus 144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~-~ 222 (282)
T TIGR01475 144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLV-G 222 (282)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHH-H
Confidence 788888889888 7788899999999999999999999999999999999999999998887766554444332211 1
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhh
Q 017603 317 TQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNA 351 (369)
Q Consensus 317 ~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~ 351 (369)
...+.+..| ...++. ..+++...+..+.++++++
T Consensus 223 ~~~~~g~~y~~~~~~~-~~~l~~~~~~~~~~~~~~~ 257 (282)
T TIGR01475 223 FYVGNGYIALLALILI-GLILAYEHYIVDPGDQSKI 257 (282)
T ss_pred HHhhCcHHHHHHHHHH-HHHHHHHHHHcCCCCHHHH
Confidence 111235555 333333 4667777787776665543
No 11
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=2.9e-36 Score=288.24 Aligned_cols=255 Identities=26% Similarity=0.339 Sum_probs=197.9
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCc
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s 161 (369)
++|+|+|++||+++..+.++.+.|++.+ +..+.. . ..+..++++.+.++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~----~-~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI----K-TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH----H-HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 5789999999999999999999998765 333211 1 123334456667889999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (369)
Q Consensus 162 G~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~ 241 (369)
|++|+++++.++.++.++|+.+++.+ |+..+.+++++.+++++||. ++|++++++|+.+|..+|..|+.+
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g 146 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG 146 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999998888877765 45567777777778999995 789998889999999999888777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017603 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRI 321 (369)
Q Consensus 242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~ 321 (369)
+.++ +++++..++. ...+++..++++.||++|+|+|+++|+||+|+++|+|+++++......+. .+.+++......
T Consensus 147 ~~a~-~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~--~~~~~l~~~~~~ 222 (277)
T PRK12883 147 AIAV-GRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLT--VIASFLPVKAGI 222 (277)
T ss_pred HHHh-ccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHH--HHHHHHHHHHcc
Confidence 6654 7777765544 34677888899999999999999999999999999999988775543221 112222222223
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh
Q 017603 322 STRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQM 356 (369)
Q Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 356 (369)
+..|.+.+.++.++++...+++++++++++++.++
T Consensus 223 ~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 257 (277)
T PRK12883 223 GLGYLPIIIVDAIILYAAYLVLRNPDRETAHKGQK 257 (277)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 44454556678889999999999988877766633
No 12
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.7e-36 Score=289.84 Aligned_cols=249 Identities=18% Similarity=0.121 Sum_probs=196.3
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHhC-------CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-------~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~ 154 (369)
.++|+|+|++||++....+...++|++.+. .+++. .++..++++.++++++|++|||+|+|+|++|+
T Consensus 6 ~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 6 KKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK------LLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 478999999999999999998888876542 22321 23344556677899999999999999999998
Q ss_pred --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (369)
Q Consensus 155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~ 232 (369)
++||+++|++|++|++.++.++.++++.+++.+ |+....+++..+++..+|| .+||++.+++++.|.
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g~ 148 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLGL 148 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHHH
Confidence 699999999999999999988887777776655 5556667766777788999 599999999999998
Q ss_pred HHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH
Q 017603 233 SYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (369)
Q Consensus 233 ~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~ 312 (369)
.++..|+.||.+++|+++...+++++..++|+.++++.++++|+|+|+++|+||+|+++|++++.++...+..++.+...
T Consensus 149 ~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 228 (291)
T PRK12874 149 SLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWL 228 (291)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHH
Confidence 88877778888889999988888999999999999999999999999999999999999999988776554433322211
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603 313 ASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDS 348 (369)
Q Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (369)
. .......+.+|...+.++..+++...+..+++++
T Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (291)
T PRK12874 229 L-FVWCAHLGLFAYLGVIVSALILLYEHYLVRKDFK 263 (291)
T ss_pred H-HHHHhcchHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 1 1111122344455666777888888888876554
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.6e-36 Score=286.96 Aligned_cols=258 Identities=26% Similarity=0.328 Sum_probs=203.7
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCC
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP 160 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~ 160 (369)
+++++|+|++||+.+....+++++|++.++ ..++. .++..++++.++++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLD------EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 579999999999999999999999987763 22221 13334557778899999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (369)
Q Consensus 161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~ 240 (369)
+|++|+++++.++.++.+++++++..+ ++..+.+++++.++++.||. ++||+++++|+.+|...+..+..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~ 145 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIF 145 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999888776 45567777778788999995 79999988999999887765556
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH-HHHhhhh
Q 017603 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA-ASLPTQI 319 (369)
Q Consensus 241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~-~~l~~~l 319 (369)
++.+..+ .+...++++...++|+.++++.+|++|+|+|+++|+||+|+++|+|++.+++.....+..+... .++...
T Consensus 146 g~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (279)
T PRK12884 146 GGIAVGE-LNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGI- 223 (279)
T ss_pred HHHHhCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6665444 4446778888889999999999999999999999999999999999999877665554443222 222221
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q 017603 320 RISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSL 358 (369)
Q Consensus 320 ~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 358 (369)
.+.+| ...+..+..+++...+..|++++++.++.+.++
T Consensus 224 -~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 262 (279)
T PRK12884 224 -FNILYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKIT 262 (279)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 24455 455566667788888999988888877774443
No 14
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=288.03 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=203.8
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC----
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---- 154 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~---- 154 (369)
++|.|++++||++...+++|+++|.+.+ +.++|. ..+..+++..++|+++|++|||+|++.|.+++
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~ 75 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG 75 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence 4789999999999999999999997654 345543 23445556677899999999999998666554
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
++|++++|.+|++++...+..+.+++++++.++.... ++..+.+++++.+.++.||.||+++||+++ ||+.++.++
T Consensus 76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~ 151 (317)
T PRK13387 76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM 151 (317)
T ss_pred CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence 6799999999999999999999999999998887654 566788899999999999999999999996 899999999
Q ss_pred hHHHHHHH-HHHhcCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 235 g~lp~~~~-~a~~g~~~~~~~l--------------------l~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
|..++.+. +.+++.+++..++ .+++.++...++++.||++|+|+|+++|+||+|+++|+
T Consensus 152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~ 231 (317)
T PRK13387 152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR 231 (317)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence 98766554 6777877766554 78899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603 294 ETAKWICVGAIDITQISVAASLP-TQIRISTRDSRPLTSDIDQLRCFAEVLFT 345 (369)
Q Consensus 294 ~~a~~~~~~~~~l~~l~~~~~l~-~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (369)
|++.+++..++.++++.++.... ..+| .++ ...++.+|..++..+.+++
T Consensus 232 ~~a~~l~~~l~~~a~l~~~~~v~~g~lp--~~~-ll~ll~lP~~~~~~~~~~~ 281 (317)
T PRK13387 232 EKGVVLFAILFYASYLAIAVIVLMGYIS--PWA-LLSFLTLRKPISNLQSFQK 281 (317)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhH--HHH-HHHHHHHHHHHHHHHHHHh
Confidence 99999998888888766543322 2222 333 2334447888888887765
No 15
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.8e-36 Score=285.08 Aligned_cols=255 Identities=28% Similarity=0.322 Sum_probs=198.4
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCc
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS 161 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s 161 (369)
+++|+|+|++||+++..+++++++|++.+...... .. ..+.+++++.++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 m~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~~-~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 2 MTVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---PS-LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---HH-HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 35899999999999999999999999876332111 11 133455577788999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603 162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (369)
Q Consensus 162 G~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~ 241 (369)
|++|++|++.++.++.++|+++++.+ |+..+.+++++.++.++||. ++||++++||+.+|...|..+.++
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g 147 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFG 147 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999888876 45567777777777889996 899999889999998888776666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh-h
Q 017603 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI-R 320 (369)
Q Consensus 242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l-~ 320 (369)
+.+.........+++++..++|..++++.||++|+|+|+++|+||+|+++|+|++.+++.....+..+. ....... .
T Consensus 148 ~~~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~--~~~~~~~~~ 225 (276)
T PRK12882 148 GAAVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA--SPLPYLLST 225 (276)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 654332334455677888889999999999999999999999999999999999998876654433222 1111111 2
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhh
Q 017603 321 ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAY 352 (369)
Q Consensus 321 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~ 352 (369)
.+..| ...+..+..+++...+..++++++.++
T Consensus 226 ~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 258 (276)
T PRK12882 226 FGLWYLVLVAPADLVMLAAAYRSLKKTDPTASQ 258 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34555 566666677888888888887765443
No 16
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=9e-36 Score=287.29 Aligned_cols=265 Identities=21% Similarity=0.213 Sum_probs=202.8
Q ss_pred cccchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
..++++|+|+|++||+++....+++++|++.+. .+++. .++.+++++.++++++|++|||+|+|+|++|+
T Consensus 5 ~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~------~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt 78 (296)
T PRK04375 5 SSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL------LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERT 78 (296)
T ss_pred chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCcc
Confidence 556689999999999999999999999998763 23331 13345557778899999999999999999988
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhH-heeecCCCCCCcccccchhhHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS 233 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~-l~~~Ys~pP~~LKr~~~~g~l~vg~~ 233 (369)
|+||+++|++|++|++.++.++.++|+++++++. |+....+++++.+ +.++||. ++||+++ +|..+|..
T Consensus 79 ~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~~ 148 (296)
T PRK04375 79 KNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGGA 148 (296)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHHH
Confidence 6999999999999999999999999998876542 3444555555543 4668994 6999997 67888877
Q ss_pred HhHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHH
Q 017603 234 YISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312 (369)
Q Consensus 234 ~g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~ 312 (369)
.|.+|+ +||++++|++++..+++++..++|+.+++..++++|+|||+++|+||+|+++|+++++++......+. +. .
T Consensus 149 ~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~-~~-~ 226 (296)
T PRK04375 149 AGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLL-VA-V 226 (296)
T ss_pred HHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHH-HH-H
Confidence 776654 56678889999989999999999999999999999999999999999999999999887665543322 11 2
Q ss_pred HHHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCC
Q 017603 313 ASLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDK 366 (369)
Q Consensus 313 ~~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (369)
.++....+ .+.+| ...+.++..+++...+..+++++++ . +.+|++|..|
T Consensus 227 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~---~--~~~F~~s~~~ 277 (296)
T PRK04375 227 SLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKW---A--RKLFRYSINY 277 (296)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHH---H--HHHHHHHHHH
Confidence 22222222 35666 4356677888888888998765443 3 3445555433
No 17
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2.6e-35 Score=283.69 Aligned_cols=252 Identities=18% Similarity=0.205 Sum_probs=201.0
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHh---CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccc--cccccC--CC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAIN--EP 155 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~---g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~--~~D~~~--~~ 155 (369)
++|.|++++||+++..+++|+++|.+.+ +.+++. .++..+++..++++++|.+|||+|+ +.|+++ ++
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~ 75 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL------LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP 75 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence 5789999999999999999999998665 344442 1333445677789999999999999 567543 47
Q ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (369)
Q Consensus 156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g 235 (369)
+||+++|++|+++++.++.++.++++++++.+.... ++..+.+++++.++++.||.||.++|++++ ||+.+|+.+|
T Consensus 76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G 151 (293)
T PRK06080 76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG 151 (293)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence 999999999999999999999998888887765543 455677888888899999999999999987 8999999998
Q ss_pred HHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603 236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS 314 (369)
Q Consensus 236 ~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~ 314 (369)
.+.+.+ ++.++|.+++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++.++++..+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~ 231 (293)
T PRK06080 152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLL 231 (293)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHH
Confidence 776554 4677888999999999999999999999999999999999999999999999999999988888887665443
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603 315 LPTQIRISTRDSRPLTSDIDQLRCFAEVLFTD 346 (369)
Q Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (369)
..... .+.++. ..++.+|...+..+.++++
T Consensus 232 ~~~~~-~~~~~l-l~ll~~p~~~~~~~~~~~~ 261 (293)
T PRK06080 232 ALLGL-ASPWGL-LFLLSLPLAVKAARPVLRK 261 (293)
T ss_pred HHHhh-hhHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 32211 233343 2333366666666655543
No 18
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-35 Score=283.75 Aligned_cols=247 Identities=23% Similarity=0.139 Sum_probs=191.4
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCC
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYR 157 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~R 157 (369)
+++|+|+|++||+.......++++|++.+. .+++. .++.++++..++++++|++|||+|+|+|++|+ ++|
T Consensus 6 ~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R 79 (291)
T PRK12886 6 TKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR 79 (291)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence 578999999999999999999999987752 23321 13344557778899999999999999999998 689
Q ss_pred CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHH
Q 017603 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237 (369)
Q Consensus 158 Pl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~l 237 (369)
|+++|++|++|++.+...+.++++.+...+ |+.++.+++++.+..++|| .+||++.+++++.|.+.+..
T Consensus 80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~~ 148 (291)
T PRK12886 80 AIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLALA 148 (291)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHHH
Confidence 999999999999988655555544444444 5666777777777788999 58999999999988887766
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017603 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT 317 (369)
Q Consensus 238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~ 317 (369)
|+.+|++++|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|++++.++...+..+.....+ +..
T Consensus 149 ~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~--~~~ 226 (291)
T PRK12886 149 PLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF--ALG 226 (291)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH--HHH
Confidence 777788889999999999999999999999999999999999999999999999999998877554433332221 111
Q ss_pred hh-hhhhhH-HHHHHHHHHHHHHHHHHHhcCCc
Q 017603 318 QI-RISTRD-SRPLTSDIDQLRCFAEVLFTDDS 348 (369)
Q Consensus 318 ~l-~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~ 348 (369)
.. +.+..| +..++.++.+++ ..+..+++|+
T Consensus 227 ~~~~~~~~y~~~~~~~~~~~l~-~~~~~~~~~~ 258 (291)
T PRK12886 227 ISAGLGPWFLAGLAVTGILLLY-EHWLLRGGDL 258 (291)
T ss_pred HHhcCcHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 11 234555 555566666664 6777776663
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=281.37 Aligned_cols=252 Identities=20% Similarity=0.207 Sum_probs=193.1
Q ss_pred cchHHHHHhhhCcc---chHHHHHHHHHHHHHhCCCC-CchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 81 TNKWKIRLQLTKPV---TWPPLIWGIVCGAAASGNFH-WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 81 ~~~~k~yl~l~RP~---~~~l~~~~~l~G~~~~g~~~-~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
.+++++|+|++||+ ...++++|+++|.+.+.... .. .. ..+.+++++.++++++|++|||+|+|+|++|+
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~---~~-~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPD---IS-LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCc---HH-HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 35799999988777 45578899999987652211 11 11 23445556778899999999999999999877
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
++||+++|++|++|++.++.++.++++.+++.+ |+..+.+++++.++.+.|| ..||++.+++++.|.++
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~ 148 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYP----LMKRFFYWPQLFLGFTF 148 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcc----ccccCCcccHHHHHHHH
Confidence 589999999999999999999999998887665 5567888888888899998 49999988999999888
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603 235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS 314 (369)
Q Consensus 235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~ 314 (369)
+..++.+|.+++|++++..++++++.++|+.++++.++++|+|+|+++|+||+|+++|+|++.+++.......++..+.
T Consensus 149 ~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~- 227 (285)
T PRK12847 149 NMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLIL- 227 (285)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHH-
Confidence 8767778888899999999999999999999999999999999999999999999999999988877654443332221
Q ss_pred Hhhhhhh-hhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603 315 LPTQIRI-STRDSRPLTSDIDQLRCFAEVLFTDDSRN 350 (369)
Q Consensus 315 l~~~l~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (369)
....+. +.+|....+ ....++......+.+++++
T Consensus 228 -~~~~~~~~~~y~~~~~-~~~~l~~~~~~~~~~~~~~ 262 (285)
T PRK12847 228 -GIISSLHNIFYLAILA-AAGIFYYQYKLLDFDNPAN 262 (285)
T ss_pred -HHHhcCcHHHHHHHHH-HHHHHHHHHHHhCCCCHHH
Confidence 111222 344432222 2334555555666555443
No 20
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.9e-35 Score=281.20 Aligned_cols=250 Identities=15% Similarity=0.019 Sum_probs=191.8
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP 158 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RP 158 (369)
++|+|+|++||++.+..+...++|++.+.+ +++. .++..++++.++++++|++||++|+|+|++|+ |+||
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~------~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RP 75 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI------KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWA 75 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCC
Confidence 589999999999999999999999877632 3321 12334446677899999999999999999996 6999
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (369)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp 238 (369)
+|+|++|++||+.+..++.++++.+.+.+ |+.++.++.....+...|+ .+||+++++|+++|+++|..|
T Consensus 76 LpsG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~ 144 (286)
T PRK12895 76 LVSGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGV 144 (286)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHH
Confidence 99999999999999999999998877766 5666777776666666776 699999999999999999777
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh
Q 017603 239 WWAGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP 316 (369)
Q Consensus 239 ~~~~~a~~g~~~~--~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~ 316 (369)
+++|.++.|++++ ..+++++..++|+.+++++++++|+|+|++.|+||+|+++|++++.++...+..++..... ..
T Consensus 145 l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~--~~ 222 (286)
T PRK12895 145 LAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFW--IS 222 (286)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHH--HH
Confidence 7888888888764 4567888899999999999999999999999999999999999988766544444332221 11
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhh
Q 017603 317 TQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNA 351 (369)
Q Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 351 (369)
.....+.+|...+.+....+....+..+.+|+++.
T Consensus 223 g~~~~~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~ 257 (286)
T PRK12895 223 GIYIRTLWYLAALIIIYTLVIYQHLIIDPRNPINK 257 (286)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 11112444533343334455555666666555443
No 21
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=6.6e-35 Score=282.22 Aligned_cols=259 Identities=17% Similarity=0.116 Sum_probs=191.3
Q ss_pred cchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhh----hcccccccccccCC
Q 017603 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQT----INDWYDREIDAINE 154 (369)
Q Consensus 81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~----iNd~~D~~~D~~~~ 154 (369)
.+.++.|+|++||++...+.++...+.+.+. ..+......+...+ .+.+.+.++|+ +|||+|+|+|++|+
T Consensus 10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l----~~~~~~~~~nv~i~~iNd~~D~~iD~ink 85 (308)
T PRK12887 10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLL----GAWIACLCGNVYIVGLNQLTDIEIDRINK 85 (308)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence 3567999999999999999999887765431 11111000111122 33334555555 99999999999999
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
|+||+++|++|+++++....++.++|+++++.+ ++..+.+++++.++++.||.||+|+||+++++++.++...
T Consensus 86 p~rPiasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 86 PHLPLAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred CCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999988776 4556788888889999999999999999998888766565
Q ss_pred hHHHHHHHH----H---HhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603 235 ISLPWWAGQ----A---LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (369)
Q Consensus 235 g~lp~~~~~----a---~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~ 307 (369)
|..+.+|.+ . ..+.+++..++++++.++|+.++++.||++|+|+|++.|+||+|+++|+|++.+++..++.++
T Consensus 159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 555444421 1 123567777888889999999999999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhhhh-hhhhhH-HHHHHHHHHHHHHHHHHHhcCCchh
Q 017603 308 QISVAASLPTQI-RISTRD-SRPLTSDIDQLRCFAEVLFTDDSRN 350 (369)
Q Consensus 308 ~l~~~~~l~~~l-~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (369)
|+..+....... +....+ .....+....++...+..+.+++++
T Consensus 239 y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (308)
T PRK12887 239 YLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQA 283 (308)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchH
Confidence 766544332222 223223 2333333445666666666665543
No 22
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=8.2e-35 Score=278.70 Aligned_cols=252 Identities=22% Similarity=0.166 Sum_probs=191.1
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHH----h-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAA----S-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~----~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~ 155 (369)
++|+|+|++||++.+....-.+.|+.. + +.+++. .++..+++..++++++|++|||+|+|+|++|+ +
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~ 74 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA------DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA 74 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence 478999999999999866655555432 2 344432 13344557777899999999999999999998 6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (369)
Q Consensus 156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g 235 (369)
+||+|+|++|++|++.++.++.++++.++..+ |+.++.++.++.+..+.|+ ..||++++++++.|++++
T Consensus 75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~ 143 (284)
T PRK12888 75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA 143 (284)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence 99999999999999998887777777776655 5556777777777778997 599999999999999888
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHH
Q 017603 236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASL 315 (369)
Q Consensus 236 ~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l 315 (369)
..|+++|++++|++++..++++++.++|+.++++.|+++|+|+|+++|+||+|+++|+|++.+++..+..++.+.....
T Consensus 144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~- 222 (284)
T PRK12888 144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF- 222 (284)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH-
Confidence 7788888888999999999999999999999999999999999999999999999999999876655544443322111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhh
Q 017603 316 PTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAY 352 (369)
Q Consensus 316 ~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 352 (369)
....+.+..|...+.+....+.+..+..+.+|+++..
T Consensus 223 ~~~~~~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (284)
T PRK12888 223 GLAVGFGALWWIGLAITAGAFAYEHAIVSPTDLSRVN 259 (284)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHcCccCHHHHH
Confidence 1111234555333333444555566666666555433
No 23
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=278.69 Aligned_cols=221 Identities=19% Similarity=0.156 Sum_probs=183.2
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC---
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--- 154 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--- 154 (369)
.++|.|++++||+++..++.|+++|.+.+ ++++|.. .+.++++..++++++|++|||+|++.|.+++
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~------~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt 75 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL------GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT 75 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 37899999999999999999999997543 4556532 3445567778999999999999966555544
Q ss_pred --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (369)
Q Consensus 155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~ 232 (369)
++||+++|++|++|+...+.++..+++.++..+.... ++..+.+++++.+.++.||.||+++|++++ ||+.++.
T Consensus 76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~ 151 (296)
T PRK05951 76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY 151 (296)
T ss_pred CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence 6799999999999999999998888887776654332 455778888898999999999999999987 8999999
Q ss_pred HHhHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603 233 SYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (369)
Q Consensus 233 ~~g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~ 311 (369)
++|.+.+++ ++.++|.+++..++.+++..+++.+..+.||++|+|+|+++|+||+|+++|+|++ +++...+.++++.+
T Consensus 152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~ 230 (296)
T PRK05951 152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL 230 (296)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence 999766554 4678899999999999999999999999999999999999999999999999999 55555556666554
Q ss_pred HH
Q 017603 312 AA 313 (369)
Q Consensus 312 ~~ 313 (369)
+.
T Consensus 231 ~~ 232 (296)
T PRK05951 231 QI 232 (296)
T ss_pred HH
Confidence 43
No 24
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=277.38 Aligned_cols=253 Identities=19% Similarity=0.197 Sum_probs=192.6
Q ss_pred chHHHHHhhhC---ccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 82 NKWKIRLQLTK---PVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 82 ~~~k~yl~l~R---P~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
+++|+|+|++| |+...+.++|+++|...+. .+++. .++.++++..++++++|++|||+|+|+|++|+
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 47899999996 6677888899999987652 23321 12334446667899999999999999999887
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
|+||+++|++|++|++.++.++..+++++++.+ |+..+.+++++.+..++|+ ..||++.+++++.|+.+
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~ 145 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAAF 145 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHHH
Confidence 589999999999999999999999998877666 5556777877877888996 48999988999989888
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHH
Q 017603 235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAAS 314 (369)
Q Consensus 235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~ 314 (369)
|..+.++|.+++|++++.++++++..++|+..+++.++++|+|+|+++|+||+|+++|+|++.++.... .+.... .+.
T Consensus 146 g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~-~~~~~~-~~~ 223 (282)
T PRK12848 146 GWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQ-LATLAL-LAW 223 (282)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHH-HHHHHH-HHH
Confidence 876677888889999999999999999999999999999999999999999999999999988766443 222211 122
Q ss_pred HhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 017603 315 LPTQIRISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNG 354 (369)
Q Consensus 315 l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (369)
.....+.+.+| ...+..++.+++. .+..++++++++.+.
T Consensus 224 ~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 263 (282)
T PRK12848 224 AGWLLGLGWAYYWGLLVAAALFVYQ-QKLIRDREREACFKA 263 (282)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHH
Confidence 22112334555 4444444444444 456666665554443
No 25
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=5.9e-35 Score=279.67 Aligned_cols=258 Identities=22% Similarity=0.229 Sum_probs=191.4
Q ss_pred HHhhhCccchHHHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccc
Q 017603 87 RLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGA 163 (369)
Q Consensus 87 yl~l~RP~~~~l~~~~~l~G~~~~g~~-~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~ 163 (369)
..++.||+.+.+.++|+++|+..+... ... +.. .++.++++..++++++|++|||+|+|+|++|+ |+||+++|+
T Consensus 7 l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~~-~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 83 (281)
T TIGR01474 7 LMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PLY-LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGA 83 (281)
T ss_pred HHccccHHHHHHHHHHHHHHHHHHhcccCCC--cHH-HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCC
Confidence 344557999999999999998765321 111 111 13334456667899999999999999999887 589999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHH
Q 017603 164 ISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQ 243 (369)
Q Consensus 164 is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~ 243 (369)
+|++|++.++.++.++|+.+++.+ |+....+++++.++.+.|| .+||++.+++++.|+.++..|+.+|+
T Consensus 84 is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~~~g~~ 152 (281)
T TIGR01474 84 VSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGALMGWA 152 (281)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887765 5667788888888899998 59999999999999888777778888
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017603 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRIST 323 (369)
Q Consensus 244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~~~ 323 (369)
+++|++++..+++++..++|+.++++.++++|+|+|+++|+||+|+++|+|++.+..........+..+. ....+.+.
T Consensus 153 a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 230 (281)
T TIGR01474 153 AVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALA--GLIAGLGP 230 (281)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHH--HHHhCCcH
Confidence 8899999888888889999999999999999999999999999999999988766554432222221111 11112344
Q ss_pred hH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCC
Q 017603 324 RD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDK 366 (369)
Q Consensus 324 ~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (369)
.| ....+.+..+++... ..+++|+++ . +.+||.|..+
T Consensus 231 ~y~~~~~~~~~~~~~~~~-~~~~~~~~~---~--~~~F~~~~~~ 268 (281)
T TIGR01474 231 VYYLGLAAAALLLIRQIA-TLDIRDPEN---C--LKLFKANNYV 268 (281)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCCCHHH---H--HHHHHHhhHH
Confidence 45 444455555555555 445555443 2 3456666544
No 26
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7.8e-35 Score=282.45 Aligned_cols=211 Identities=23% Similarity=0.290 Sum_probs=177.7
Q ss_pred chHHHHHhhh---CccchHHHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 82 NKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNFH--WNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 82 ~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~g~~~--~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
.++++|+|++ ||++..+.++|+++|.+++.... +...+.. .++..++++.++++++|++|||+|+|+|++|+
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~-~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt 106 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW-HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVART 106 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 5899999999 99999999999999987653210 0001112 23344557778999999999999999999887
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
++||+++|++|++|++.++.++.++|+.+.+.+ |+..+.++++++++.+.|| .+||++.++++..|+.+
T Consensus 107 ~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~Gl~~ 175 (314)
T PRK12878 107 RSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFFLGLAF 175 (314)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHHHHHHH
Confidence 589999999999999999988888888887665 4557888888888899998 59999998888888887
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHH
Q 017603 235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI 304 (369)
Q Consensus 235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~ 304 (369)
+..|+.+|++++|++++..+++++..++|+..++..++++|+|+|+++|+||+|+++|++++.+++....
T Consensus 176 ~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~ 245 (314)
T PRK12878 176 SWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYG 245 (314)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHH
Confidence 7667778889999999988999999999999999999999999999999999999999999988775443
No 27
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=1.2e-34 Score=277.52 Aligned_cols=261 Identities=19% Similarity=0.123 Sum_probs=198.5
Q ss_pred HHHHhhhCccchHHHHHHHHHHHHHhCC---CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCC
Q 017603 85 KIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI 159 (369)
Q Consensus 85 k~yl~l~RP~~~~l~~~~~l~G~~~~g~---~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl 159 (369)
|+|+|++||+++....+++++|++.++. +++. .++.+++++.++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl 74 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPP------LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPL 74 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCC
Confidence 4799999999999999999999987643 2321 23445557778899999999999999999987 69999
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (369)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp 238 (369)
++|++|++++..++.++.++|+.++.... |+....+++++.++ .++||. ++||++++ +..+|...|.+|
T Consensus 75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~ 144 (280)
T TIGR01473 75 VTGRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVP 144 (280)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHH
Confidence 99999999999999999988888554421 55566777777654 889995 69999986 566676777776
Q ss_pred HH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017603 239 WW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPT 317 (369)
Q Consensus 239 ~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~ 317 (369)
++ +|++++|++++..+++++..++|+..+.....++|+|||+++|+||+|+++|+|++.++......+. ....++..
T Consensus 145 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~--~~~~~~~~ 222 (280)
T TIGR01473 145 PLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAAL--LPVSLLLA 222 (280)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 54 5577789999999999999999999888888899999999999999999999999887665443222 11222222
Q ss_pred hhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603 318 QIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL 367 (369)
Q Consensus 318 ~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
..+ .+..| ...++++..+++...++.++++++ ++. +.++++|..|+
T Consensus 223 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~--~~~--~~~f~~s~~~~ 270 (280)
T TIGR01473 223 FLGGTGWLYLIVATLLGALFLYLAFKFYRDPTDR--KKA--RKLFKFSLIYL 270 (280)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHH--HHHHHHHHHHH
Confidence 222 35566 456677778888888888876321 123 55667666554
No 28
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.4e-34 Score=276.40 Aligned_cols=204 Identities=23% Similarity=0.246 Sum_probs=173.4
Q ss_pred chHHHHHhhhCccc---hHHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--
Q 017603 82 NKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 82 ~~~k~yl~l~RP~~---~~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
+++++|+|++||+. ..+.++|+++|+..+ +.+++. .++.++++..++++++|++|||+|+|+|++|+
T Consensus 7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~------~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt 80 (290)
T PRK12870 7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP------LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT 80 (290)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence 57899999986555 667778999998765 333332 13344456677899999999999999999877
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
++||+++|++|++|+..++.++.++++.+++.+ |+.++.+++.+.++.++|| ..||++.+++++.|.++
T Consensus 81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~ 149 (290)
T PRK12870 81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAIAW 149 (290)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehHHH
Confidence 489999999999999999999999999888776 5667778888888888998 48999999999999988
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603 235 ISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 235 g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
+..++.+|.+++|++++..+++++..++|+.++++.++++|+|+|+++|+||+|+++|++++.++...
T Consensus 150 ~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~ 217 (290)
T PRK12870 150 GFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF 217 (290)
T ss_pred HhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH
Confidence 87677788889999999999999999999999999999999999999999999999999998876653
No 29
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=1e-33 Score=272.89 Aligned_cols=253 Identities=17% Similarity=0.165 Sum_probs=203.5
Q ss_pred cccchHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--cccc
Q 017603 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI 152 (369)
Q Consensus 79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~ 152 (369)
+..++++.|++.+||+++..+++|+++|.+.+ +.++|.. .+.+++++.++|+++|.+|||+|++ .|+.
T Consensus 7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~------~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~ 80 (304)
T PRK07419 7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ------FITFLLAAILILAWENLSNDVFDADTGIDKN 80 (304)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44567999999999999999999999997654 3456532 3345557778999999999999987 6773
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (369)
Q Consensus 153 ~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~ 232 (369)
++ ....++..+++++...+.++++++++++.++.... ++..+.+++++.+.+++||.||+++||+++ ||+.+++
T Consensus 81 -~~-~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v~l 154 (304)
T PRK07419 81 -KF-HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLCFL 154 (304)
T ss_pred -cc-cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHHHH
Confidence 22 23445556899999999999999999998876554 566788899999999999999999999997 8999999
Q ss_pred HHhHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603 233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (369)
Q Consensus 233 ~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~ 311 (369)
++|.+++.+. +.++|++++..++.+++..+.+.++++.||++|+|+|+++|++|+++++|+|++++++..++..+++.+
T Consensus 155 ~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~ 234 (304)
T PRK07419 155 AFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALE 234 (304)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHH
Confidence 9998877654 688999999999999999999999999999999999999999999999999999999988888887766
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603 312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFT 345 (369)
Q Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (369)
+...... ...++....++.+|..++..+.+++
T Consensus 235 i~~v~~g--~~p~~~Ll~ll~lPl~~~~~~~~~~ 266 (304)
T PRK07419 235 LLPVLLG--FWPWTTLLSLLSLPFAIKLIRLVRE 266 (304)
T ss_pred HHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322 1122323344447777777777755
No 30
>PRK13595 ubiA prenyltransferase; Provisional
Probab=100.00 E-value=7.1e-34 Score=270.38 Aligned_cols=261 Identities=16% Similarity=0.117 Sum_probs=193.7
Q ss_pred ccchHHHHHhhhCccchHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Q 017603 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158 (369)
Q Consensus 80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RP 158 (369)
....++.+++++||.+|+....++++|+..+|. ++|.... ..+.++ .....+.+.|.+|||+|+|+|++|+|+||
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~~---~~l~~~-~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPGV---LPLLLY-LTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhHH---HHHHHH-HHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 345688999999999999999999999988763 5652111 122223 22346779999999999999999999999
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (369)
Q Consensus 159 l~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp 238 (369)
+++|++|+++++.+...+...++.++..+.... ++..+.+.+++.++.+.||.||+|+|++++++++.. ..+| +|
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p 158 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-LP 158 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-HH
Confidence 999999999999876666655544443333322 566677777888899999999999999999988876 3444 47
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhh
Q 017603 239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQ 318 (369)
Q Consensus 239 ~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~ 318 (369)
+..+.++.|+......+ +..++|..+.+.+++++|+|+|++.|+||+|+++|+|++.+++..++.++... +..
T Consensus 159 ~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~-----~~~ 231 (292)
T PRK13595 159 LALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL-----LWP 231 (292)
T ss_pred HHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH-----HHH
Confidence 66666677765443333 34578889999999999999999999999999999999999887765443221 222
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhh
Q 017603 319 IRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMH 360 (369)
Q Consensus 319 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 360 (369)
.+...+.+ +.++......++.++++.|+++|+|+.++.
T Consensus 232 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (292)
T PRK13595 232 VSRLTALA----LWLICGGMALALWRRPTPETAHRLYPLSIV 269 (292)
T ss_pred hcchHHHH----HHHHHHHHHHHHhcCCCHHHHhccchHHHH
Confidence 22222111 334555566677799999999999998653
No 31
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-33 Score=265.01 Aligned_cols=271 Identities=17% Similarity=0.187 Sum_probs=214.6
Q ss_pred cchHHHHHhhhCccchHHHHHHHHHHHHHh---C-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--cccc--
Q 017603 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI-- 152 (369)
Q Consensus 81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~---g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~-- 152 (369)
.++.+.|++++||+++..++.|+++|.+.+ + .++| +. .+.++++..+++.++|..|||.|++ .|.+
T Consensus 5 ~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~-~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~ 78 (303)
T COG1575 5 TSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LV-ALLALIAAILLQILVNLANDYFDYKKGTDTHGP 78 (303)
T ss_pred cHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HH-HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC
Confidence 346689999999999999999999997544 2 3444 22 3445557778999999999999986 5642
Q ss_pred --CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHH
Q 017603 153 --NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL 230 (369)
Q Consensus 153 --~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~v 230 (369)
.+.++-+...+++++..+...+.+...+.+++..+.... +|..+.+|+++++.++.||.||+|++|.|+ ||+.+
T Consensus 79 ~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi~~ 154 (303)
T COG1575 79 DRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEIFV 154 (303)
T ss_pred ccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHHHH
Confidence 224667777788888888888888877777777665443 566788999999999999999999999997 89999
Q ss_pred HHHHhHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHH
Q 017603 231 GASYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309 (369)
Q Consensus 231 g~~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l 309 (369)
|.++|.+.+. +++.+++++++..++.+++.++.+.+++..||++|+|+|+|+|++|+||++|++.++.++..++..+++
T Consensus 155 ~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l 234 (303)
T COG1575 155 GVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYL 234 (303)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHH
Confidence 9999988665 457889999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcC
Q 017603 310 SVAASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFS 363 (369)
Q Consensus 310 ~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (369)
..+....... ..+++ ...++.+|...+..|.+++.+.+...+.+++.|.+++
T Consensus 235 ~~~~~~i~~~-~~~~~-ll~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~ 286 (303)
T COG1575 235 AIVIFVILGL-FPVWG-LLFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKAN 286 (303)
T ss_pred HHHHHHHHHh-chHHH-HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 6654333221 23333 2333347788888888777665667777777777664
No 32
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.1e-33 Score=272.32 Aligned_cols=210 Identities=20% Similarity=0.121 Sum_probs=170.0
Q ss_pred ccchHHHHHhhhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603 80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (369)
Q Consensus 80 ~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~ 155 (369)
.++++|+|+|++||+.....+.++.+|++.+. .+++. .++.++++..++++++|++|||+|+|+|++|+ +
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~ 84 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK 84 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence 34579999999999999999999999987763 33332 13344557777899999999999999999996 6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHh
Q 017603 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI 235 (369)
Q Consensus 156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g 235 (369)
+||+|+|++|++|++.+..++.+.++.+++.+ |+.+..++.++.++.+.|| .+||+++++|+++|.+++
T Consensus 85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~ 153 (300)
T PRK13106 85 NRPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQG 153 (300)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHH
Confidence 99999999999999998766666666665555 5556777777776777898 599999999999999999
Q ss_pred HHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603 236 SLPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (369)
Q Consensus 236 ~lp~~~~~a~~g~~--------~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~ 307 (369)
..++.|+.++.|.. +..++++.+..++|+.++++.|+++|+|+|+++|+||+|+++| +++.++...+..++
T Consensus 154 ~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~ 232 (300)
T PRK13106 154 LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFS 232 (300)
T ss_pred HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHH
Confidence 88888888777743 2344666667889999999999999999999999999999999 87877766554443
No 33
>PLN02922 prenyltransferase
Probab=100.00 E-value=7.6e-33 Score=268.26 Aligned_cols=255 Identities=20% Similarity=0.204 Sum_probs=191.4
Q ss_pred ccccchHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--ccc
Q 017603 78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDA 151 (369)
Q Consensus 78 ~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~ 151 (369)
+++.+++|.|++.+||+++..+++|+++|.+.+ +.++|.. .+.++++..++|.++|.+|||+|++ .|+
T Consensus 9 ~~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~------~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~ 82 (315)
T PLN02922 9 GEELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR------YGTLLLSSVLVITWLNLSNDAYDADTGVDK 82 (315)
T ss_pred CCCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH------HHHHHHHHHHHHHHHHHHhhhhHhccCcCc
Confidence 366778999999999999999999999997654 4566542 3345557778999999999999986 576
Q ss_pred cCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603 152 INEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (369)
Q Consensus 152 ~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg 231 (369)
.++..+.-..| |++++...+..+.+++++ +..+..... .++..+.+++++++.++.||.||+++||+++ ||+.++
T Consensus 83 ~~~~~~~~~~~--s~~~v~~~~~~~~~la~~-g~~ll~~~~-~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v~ 157 (315)
T PLN02922 83 NKKESVVNLVG--SRRGVLAAAIGCLALGAA-GLVWASLVA-GNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLCF 157 (315)
T ss_pred ccCCCCCCccc--CHHHHHHHHHHHHHHHHH-HHHHHHHHc-cChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHHH
Confidence 43322112233 999999988888888874 443321210 1466788899999999999999999999998 899999
Q ss_pred HHHhHHHHHHH-HHHhc----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHH
Q 017603 232 ASYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300 (369)
Q Consensus 232 ~~~g~lp~~~~-~a~~g----------~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~ 300 (369)
..+|.+++.+. +.++| .+++..++.+++..+++.++++.||++|+|+|+++|++|+++++|+|++++++
T Consensus 158 i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~ 237 (315)
T PLN02922 158 AAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVV 237 (315)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHH
Confidence 99998877654 46666 35677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhc
Q 017603 301 VGAIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLRCFAEVLFT 345 (369)
Q Consensus 301 ~~~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~ 345 (369)
..++.++|+.++...... ...++ ....++.+|......+.+++
T Consensus 238 ~~l~~~~y~~~i~~v~~~--~~p~~~~l~~ll~lpl~~~~~~~~~~ 281 (315)
T PLN02922 238 RWAVLLLYSLLAALGLLK--ALPLPCALLCFLTLPLGKLVVDFVEK 281 (315)
T ss_pred HHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876664433321 11222 22233335544555555554
No 34
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=4.9e-33 Score=266.23 Aligned_cols=242 Identities=18% Similarity=0.164 Sum_probs=194.6
Q ss_pred CccchHHHHHHHHHHHHHh---CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--ccccC--CCCCCCCcccc
Q 017603 92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI 164 (369)
Q Consensus 92 RP~~~~l~~~~~l~G~~~~---g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~--~D~~~--~~~RPl~sG~i 164 (369)
||+++..++.|+++|.+.+ +.++|.. .+..+++..++|+++|.+|||+|++ .|+.+ .++|++++|.+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~~------~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i 74 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLHAFVWLV------ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI 74 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCccHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence 8999999999999997654 3455432 3344557778999999999999985 46533 37899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccch------HHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHH
Q 017603 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFP------TIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP 238 (369)
Q Consensus 165 s~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~------~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp 238 (369)
|++++...+.++++++++++.++.... ++ ....+++++++.++.||.||+++|++++ ||+.+++++|.++
T Consensus 75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~---~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~ 150 (284)
T TIGR00751 75 TPREVKTALITSVALGALSGLVLALLA---APNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLA 150 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHH
Confidence 999999999999999999988876554 23 3567888888899999999999999997 8999999999887
Q ss_pred HHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHh-
Q 017603 239 WWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLP- 316 (369)
Q Consensus 239 ~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~- 316 (369)
+.+ ++.++|++++..++.+++..+++.++++.||++|+|+|+++|++|+++++|+|++++++..++..+++.++....
T Consensus 151 v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~ 230 (284)
T TIGR00751 151 VLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLA 230 (284)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 468899999999999999999999999999999999999999999999999999999998888777765533222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 017603 317 TQIRISTRDSRPLTSDIDQLRCFAEVLFTD 346 (369)
Q Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (369)
..+| . +....++.+|...+..+.++++
T Consensus 231 ~~~p--~-~~ll~ll~lPl~~~~~~~~~~~ 257 (284)
T TIGR00751 231 TPIS--W-WCVLFLLAAPLLLKAAGPVRSG 257 (284)
T ss_pred hhch--H-HHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 2 2223344477777777777653
No 35
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.6e-33 Score=265.88 Aligned_cols=250 Identities=20% Similarity=0.122 Sum_probs=187.9
Q ss_pred cchHHHHHhh---hCccchHHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC-
Q 017603 81 TNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE- 154 (369)
Q Consensus 81 ~~~~k~yl~l---~RP~~~~l~~~~~l~G~~~~g~--~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~- 154 (369)
.+++++|+|+ .||+...++++|+++|++.+.. +++. .++.+++++.++.+++|++||+.|+|+|++|+
T Consensus 4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~------~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 77 (294)
T PRK12873 4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLL------LLLLIILGGLAVSGAGCIANDLWDRRIDRKVER 77 (294)
T ss_pred hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 3479999999 6788888999999999876532 2321 23445567778899999999999999999998
Q ss_pred -CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHH
Q 017603 155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS 233 (369)
Q Consensus 155 -~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~ 233 (369)
++||+++|++|+++|+.++.++.++++.+++.++... |+.++.++++++++..+|| .+||++.+++++.|++
T Consensus 78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~---n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~~ 150 (294)
T PRK12873 78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPS---RNLCLSLAFLALPPILIYP----SAKRWFAYPQAILALC 150 (294)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHHH
Confidence 5999999999999999999999999988877663211 5667788888888888999 5999999999998888
Q ss_pred HhHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603 234 YISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (369)
Q Consensus 234 ~g~lp~~~~~a~~g~~~~~--~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~ 311 (369)
.+..|++||.+++|++++. .+++++..++|+.+++++++++|+|||+++|+||+|+++|++..++... ++.++.+.+
T Consensus 151 ~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~-~~~~~~~ll 229 (294)
T PRK12873 151 WGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQI-CYFLTSIFL 229 (294)
T ss_pred HHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHH-HHHHHHHHH
Confidence 8776778888999998863 3445578899999999999999999999999999999999865554333 333332211
Q ss_pred --HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC
Q 017603 312 --AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDD 347 (369)
Q Consensus 312 --~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (369)
.++. .+.+..|...+......+....+..+.++
T Consensus 230 ~~~g~~---~~l~~~y~~~~~~~~~~l~~~~~~~~~~~ 264 (294)
T PRK12873 230 ALAAFI---AQVGFIFWPFWLIASIGMQRDILKLFPEK 264 (294)
T ss_pred HHHHHH---hCCcHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 2221 22344453333333344555566666554
No 36
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=5.5e-33 Score=266.50 Aligned_cols=250 Identities=22% Similarity=0.213 Sum_probs=188.4
Q ss_pred chHHHHHhhh---CccchHHHHHHHHHHHHHh---CC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC
Q 017603 82 NKWKIRLQLT---KPVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE 154 (369)
Q Consensus 82 ~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~---g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~ 154 (369)
+++++|+|++ ||..+.+..+|+++|...+ +. +++. .++.++++..++++++|++||++|+|+|++|+
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~ 77 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKVE 77 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence 4688888877 5888899999999987654 22 2321 23345556677899999999999999999987
Q ss_pred --CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHH
Q 017603 155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA 232 (369)
Q Consensus 155 --~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~ 232 (369)
|+||+++|++|++|++.+..++.++++++++.+ |+.++.+++++.++.++|| .+||++++++++.|+
T Consensus 78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~ 146 (289)
T PLN02809 78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLGL 146 (289)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHHH
Confidence 599999999999999999999999999888776 4556778888888888998 599999999999998
Q ss_pred HHhHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHH
Q 017603 233 SYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV 311 (369)
Q Consensus 233 ~~g~lp~~~~~a~~g~~~~~~~l-l~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~ 311 (369)
+++..|+++|.+++|++++..++ +.+..++|+.++++.++++|+|+|+++|+||+|+++|+++..++.. +..+++..+
T Consensus 147 ~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l 225 (289)
T PLN02809 147 TFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGL 225 (289)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHH
Confidence 88877888888889988876664 7777889999999999999999999999999999999997666654 333333222
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCchh
Q 017603 312 AASLPTQIRISTRDSRPLTSDIDQLRCFAEVLFTDDSRN 350 (369)
Q Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (369)
.. .....+.+..|...+......+....+..+.+|+++
T Consensus 226 ~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 263 (289)
T PLN02809 226 AL-SGYNAGLGWPYYAGLAAAAGHLAWQIQTVDLSSRAD 263 (289)
T ss_pred HH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 11 111113344442233333334555555665555554
No 37
>PLN02776 prenyltransferase
Probab=100.00 E-value=6.8e-33 Score=269.12 Aligned_cols=253 Identities=19% Similarity=0.104 Sum_probs=197.9
Q ss_pred hhCccchHHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccccC
Q 017603 90 LTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS 165 (369)
Q Consensus 90 l~RP~~~~l~~~~~l~G~~~~g--~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is 165 (369)
++||+...+++++.+.|++.+. .+++. .++.+.+++.++++++|++||++|+|+|++|+ ++||+|+|++|
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris 74 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS 74 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence 5899999999999999998763 23332 23445557777899999999999999999988 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHHhHHH-HHHHH
Q 017603 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP-WWAGQ 243 (369)
Q Consensus 166 ~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp-~~~~~ 243 (369)
+++|+.++.++.++|+.+..... |+.++.++++++++ ...|| .+||++++ |.++|+..|.+| ++||.
T Consensus 75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~ 143 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA 143 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence 99999999999888886554321 66677777776554 67999 59999987 789999999765 56788
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEe--ChhhHHHHHHHHHHHHHHHHHHHHhhhhh-
Q 017603 244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICVGAIDITQISVAASLPTQIR- 320 (369)
Q Consensus 244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~--G~~~a~~~~~~~~~l~~l~~~~~l~~~l~- 320 (369)
+++|++++..+++++..++|+..+.+...+.|+|||+++|+||+|+.. |+++++.+......+..+ ++++..++
T Consensus 144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~---~ll~~~~g~ 220 (341)
T PLN02776 144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPL---GFLAYDWGV 220 (341)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 899999999999999999999998889999999999999999999987 355555555443333222 22222222
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhhcCCCCC
Q 017603 321 ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYNGQMSLMHKFSPDKL 367 (369)
Q Consensus 321 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (369)
.+.+| +..+.+++.+++...++.+++|++ +-+.||++|..||
T Consensus 221 ~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~-----~ar~~F~~Sl~yL 263 (341)
T PLN02776 221 TSSPFALEAALLTAYLAASAASFYREPTNA-----NARKMFHGSLLYL 263 (341)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHH
Confidence 23444 677888888999999999876533 3377899998886
No 38
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=2.9e-32 Score=261.06 Aligned_cols=245 Identities=20% Similarity=0.190 Sum_probs=194.9
Q ss_pred HHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccc--cccCCCCCCCC
Q 017603 87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI--DAINEPYRPIP 160 (369)
Q Consensus 87 yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~--D~~~~~~RPl~ 160 (369)
|++.+||+++..++.|+++|.+.+ +.++|.. .+.++++..++|.++|.+|||+|++. |+.+. ....
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~------~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~ 73 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR------FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIV 73 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH------HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcc
Confidence 788999999999999999997654 4566542 33344577789999999999999864 76432 1222
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHH
Q 017603 161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240 (369)
Q Consensus 161 sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~ 240 (369)
++..+++++...+.++..++++++..+.... ++..+.+++++.+.++.||.||+++||+++ ||+.+++.+|.+++.
T Consensus 74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~ 149 (285)
T TIGR02235 74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA 149 (285)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence 3335688888888889999999888876654 466788888999999999999999999998 899999999988765
Q ss_pred H-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 017603 241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQI 319 (369)
Q Consensus 241 ~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l 319 (369)
+ ++.++|++++..++.+++..+.+.++++.||++|+|+|+++|+||+++++|+|++.+++..++.++|+.++......
T Consensus 150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~- 228 (285)
T TIGR02235 150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG- 228 (285)
T ss_pred HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5 46889999999999999999999999999999999999999999999999999999999988888887664433322
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc
Q 017603 320 RISTRDSRPLTSDIDQLRCFAEVLFT 345 (369)
Q Consensus 320 ~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (369)
...++....++.+|..++..+.+++
T Consensus 229 -~~p~~~ll~ll~lPl~~~~~~~~~~ 253 (285)
T TIGR02235 229 -FLPWTTLLALASIPWAVKLIRLVRQ 253 (285)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223323344447777777777765
No 39
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-32 Score=262.10 Aligned_cols=206 Identities=30% Similarity=0.373 Sum_probs=180.1
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCC--CCCC
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRPI 159 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~--~RPl 159 (369)
.++.++++.||..+.+..++..+|...+. .... ....+..++++.++++++|++||+.|+|+|++|+| +||+
T Consensus 12 ~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl 86 (289)
T COG0382 12 ALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL 86 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence 46777888899999999999999987764 2221 12344555677778999999999999999999997 9999
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHH
Q 017603 160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239 (369)
Q Consensus 160 ~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~ 239 (369)
++|++|+++++.+..++.++++++++.+ |+..+.+.+.+.++.+.|. ++||.++++++.+|.+++..+.
T Consensus 87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y~----~~Kr~~~~~~~~lg~~~~~~~~ 155 (289)
T COG0382 87 PSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAYP----FLKRFTFLPQLVLGLAFGLGAL 155 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 5556788888888999993 6999999999999999998888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHH
Q 017603 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI 304 (369)
Q Consensus 240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~ 304 (369)
+|+.++.|+.....+++.+..++|+.+++..++++|+|+|+++|+||+|+.+|++++.++.....
T Consensus 156 ~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~ 220 (289)
T COG0382 156 AGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL 220 (289)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999999999998887655
No 40
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.1e-31 Score=256.46 Aligned_cols=257 Identities=17% Similarity=0.180 Sum_probs=183.6
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHh----CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccC----
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN---- 153 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~----g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~---- 153 (369)
+++|+|++++||+.+.....++.+|.+.+ |.+++. .++.+++++.++..++|++|||+|+|.|++|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~------~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rt 76 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE------LTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENT 76 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence 46899999999998888888888887553 444442 1222334555666778999999999999864
Q ss_pred -----C--CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCccccc---
Q 017603 154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG--- 223 (369)
Q Consensus 154 -----~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~--- 223 (369)
+ ++||+++|++|+++++.++.++.++|++++..+.... .+..+.+++.+.++++.|+ +|++.
T Consensus 77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~-----~~kr~~~~ 148 (297)
T PRK12871 77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQ-----VKKRNQKY 148 (297)
T ss_pred hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-----cccccccc
Confidence 2 5899999999999999999999999998887765332 2334566667777788888 33332
Q ss_pred chhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHH
Q 017603 224 WIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA 303 (369)
Q Consensus 224 ~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~ 303 (369)
+.+.+.-+..++. +.+.+++++|+++...+++++..++|+.+++..||++|+|||+++|+||+|+++|+++++++...+
T Consensus 149 p~~~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~ 227 (297)
T PRK12871 149 PVAQLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGF 227 (297)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHH
Confidence 2223222234444 444445678999998899999999999999999999999999999999999999999888766554
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh
Q 017603 304 IDITQISVAASLPTQIRISTR-DSRPLTSDIDQLRCFAEVLFTDDSRNAYNGQM 356 (369)
Q Consensus 304 ~~l~~l~~~~~l~~~l~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 356 (369)
..+..+..+++.. ..+.. +...+....+.++.+.+..|.++++.+-+.-+
T Consensus 228 ~~l~~l~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 278 (297)
T PRK12871 228 TALHFLAAIFFLR---ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP 278 (297)
T ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4444333332222 22322 33333444667888888899988877655533
No 41
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=256.84 Aligned_cols=212 Identities=23% Similarity=0.164 Sum_probs=168.3
Q ss_pred chHHHHHhhhCccchHHHHHHHHHHHHHhC-------C-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017603 82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASG-------N-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN 153 (369)
Q Consensus 82 ~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g-------~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~ 153 (369)
+++|.|.|+.|-++.+..+--...|+..+. . +++.. + ..++.+.++.+++++++|++||++|+|+|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~--~-~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG--I-KTISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC--H-HHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 468999999999998887776777765442 1 11211 1 12344555667789999999999999999999
Q ss_pred C--CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHH
Q 017603 154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG 231 (369)
Q Consensus 154 ~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg 231 (369)
+ ++||+|+|++|++|++.++..+.++++.+...+ |+.++.++.+++++.++|| .+||++++++++.|
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG 147 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG 147 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence 9 599999999999999999876666666666666 6777888888888888998 59999999999999
Q ss_pred HHHhHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHH
Q 017603 232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI 306 (369)
Q Consensus 232 ~~~g~lp~~~~~a~~g~-~~~----~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l 306 (369)
.+++..|+++|.++.|+ +++ ..++.++..++|..+++++++++|+|+|++.|+||+|+++|++++.++...+..+
T Consensus 148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l 227 (300)
T PRK12876 148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA 227 (300)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence 99988788888887776 554 3344556677788899999999999999999999999999999886666544444
Q ss_pred H
Q 017603 307 T 307 (369)
Q Consensus 307 ~ 307 (369)
+
T Consensus 228 ~ 228 (300)
T PRK12876 228 S 228 (300)
T ss_pred H
Confidence 3
No 42
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.1e-29 Score=242.22 Aligned_cols=254 Identities=15% Similarity=0.166 Sum_probs=176.1
Q ss_pred HHHHHhhhCccchHHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcc
Q 017603 84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (369)
Q Consensus 84 ~k~yl~l~RP~~~~l~~~~~l~G~~~~g~-~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG 162 (369)
+|.+++++||++|+...+|+.+|+..++. ++|. + +++.+......+.+.|.+|||+|+|.|++|++++.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~~---~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDWL---F---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCCCCChH---H---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 37889999999999999999999987743 3331 1 111111111223344677999999999999865443 48
Q ss_pred ccCHHHHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHH
Q 017603 163 AISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241 (369)
Q Consensus 163 ~is~~~a~~~~~~l~~~gl~-l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~ 241 (369)
.++++|+......+..++++ +++.+... .++..+.++.++++.++.||.||+|+|++++.+++..+..+......|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHH
Confidence 89999986655554444443 33332221 156677888889899999999999999999987765555543333344
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017603 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIRI 321 (369)
Q Consensus 242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~~ 321 (369)
.+...+.+++..++++..+++|+.+++..||++|+|+|+++|+||+|+++|+|++.+++..++.++++.++ . ++.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~---~--~~~ 225 (282)
T PRK13105 151 LVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML---A--LPW 225 (282)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH---H--HHh
Confidence 44456678888888888999999999999999999999999999999999999999999887776654443 1 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh--cCCchhhhhh
Q 017603 322 STRDSRPLTSDIDQLRCFAEVLF--TDDSRNAYNG 354 (369)
Q Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~--~~~~~~~~~~ 354 (369)
...+ ..++.+|...+..+.++ ++++++-.+.
T Consensus 226 ~~~~--l~ll~~p~~~~~~~~~~~~~~~~~~l~~~ 258 (282)
T PRK13105 226 PGWL--AAVLALPYVVNTARFWSVTDADCERANRG 258 (282)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 2222 22333455555555554 4454444443
No 43
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4e-29 Score=239.61 Aligned_cols=259 Identities=20% Similarity=0.122 Sum_probs=188.3
Q ss_pred hHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCcc
Q 017603 83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG 162 (369)
Q Consensus 83 ~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG 162 (369)
-++.++++.|+.+..........+.......++.. ....+++..+.+.++|++|||+|+|+|++|+|+||.+
T Consensus 3 ~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~-- 74 (285)
T PRK12872 3 LLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF-- 74 (285)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH--
Confidence 46899999999999888887777653321122221 1123334556788999999999999999999999987
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCC-CcccccchhhHHHHHHHhHHHHHH
Q 017603 163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWA 241 (369)
Q Consensus 163 ~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~-~LKr~~~~g~l~vg~~~g~lp~~~ 241 (369)
|++++......+..+++.++.++.... .++..+.+++++.++++.||.||. ++||.+..+|+.+|..+|..|.++
T Consensus 75 --s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~ 150 (285)
T PRK12872 75 --SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLIL 150 (285)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 556666666666666666665543221 256677788888888999999876 489999899999999999888765
Q ss_pred H-HHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017603 242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQIR 320 (369)
Q Consensus 242 ~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~l~ 320 (369)
+ +...+.++...++.++..+++.+..+..+|++|+|+|+++|+||+|+++|+|++++++..+..++++..+.......
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~- 229 (285)
T PRK12872 151 GVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL- 229 (285)
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 5 44455567777778888888999999999999999999999999999999999999988777666554432222111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 017603 321 ISTRDSRPLTSDIDQLRCFAEVLFTDDSRNAYNG 354 (369)
Q Consensus 321 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (369)
.+.++...+.+..+.++...++.+++++++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T PRK12872 230 LPLLLLVLLLLLAYVLYYIIKLFAADDKKDLLYL 263 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 2333344444445566666777777776664444
No 44
>PLN02878 homogentisate phytyltransferase
Probab=99.96 E-value=3.2e-28 Score=229.18 Aligned_cols=181 Identities=25% Similarity=0.507 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 017603 124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV 203 (369)
Q Consensus 124 ~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l 203 (369)
++..+++..++..+...+|||+|+|+||+|||+||+|||++|+++++.+...+.++|+.+++.++.+ + .+....
T Consensus 25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~~-----~-l~~al~ 98 (280)
T PLN02878 25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSW-----P-LFWALF 98 (280)
T ss_pred HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHChH-----H-HHHHHH
Confidence 4445556777888889999999999999999999999999999999999999999999999887421 1 233334
Q ss_pred HHhHheeecCC--CCCCcccccchhhHHHHHHHhHH---HHHHH--HHHhc---CCCHHHHHHHHHHHHHHHHHHHHhhc
Q 017603 204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYISL---PWWAG--QALFG---TLTPDIIVLTLLYSIAGLGIAIVNDF 273 (369)
Q Consensus 204 ~~~~l~~~Ys~--pP~~LKr~~~~g~l~vg~~~g~l---p~~~~--~a~~g---~~~~~~~ll~~~~~l~~~~~~~~~~~ 273 (369)
.++++++.||. ||+|+||+++.........-+.. +++.+ ....| .++...++..+.+++...++++.||+
T Consensus 99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi 178 (280)
T PLN02878 99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI 178 (280)
T ss_pred HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 45578899996 99999999987654432222222 22222 12334 23334455544566677789999999
Q ss_pred cChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHH
Q 017603 274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS 310 (369)
Q Consensus 274 ~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~ 310 (369)
+|+|||++.|++|+|+++|+|++.+++..++.++|..
T Consensus 179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~ 215 (280)
T PLN02878 179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA 215 (280)
T ss_pred cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888764
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.3e-26 Score=221.48 Aligned_cols=212 Identities=21% Similarity=0.254 Sum_probs=136.4
Q ss_pred cchHHHHHhhhCccchHHHHHHHHHHHHHhCC--C-CCchhhHHHHHHHHHHHHHH-HHHHhhhhcccccccccccCCCC
Q 017603 81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN--F-HWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINEPY 156 (369)
Q Consensus 81 ~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~--~-~~~~~~~~~~~l~~~~a~~l-~~~a~~~iNd~~D~~~D~~~~~~ 156 (369)
..++|.|+++.||++|..++.|+++|.+.+.. . .+.. .+++++....+ .....|.+|||+|+|+|+.|+|+
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 45789999999999999999999999876532 1 1221 11222211111 22345668999999999999865
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (369)
Q Consensus 157 RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~ 236 (369)
+. |+...++.......+.+++++++..+.... ++....+.+..+++.+.||.||+|+|++++.+..+.|. + .
T Consensus 80 ~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~~~~~~g~-~-~ 151 (282)
T PRK12875 80 DR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVLDSLSNGL-Y-I 151 (282)
T ss_pred cC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHHHHHHHHH-H-H
Confidence 43 221112211111111111222222221111 22223333445677999999999999999864443343 3 3
Q ss_pred HHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHHHHHH
Q 017603 237 LPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT 307 (369)
Q Consensus 237 lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~ 307 (369)
+|.+ ++++++|++++..++++ .++|+.++++.|+++|+|+|+++|+||+|+++|+|++++++..+..++
T Consensus 152 ~~~~~~y~~~tg~~~~~~l~~a--~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a 221 (282)
T PRK12875 152 LPGVAAYALVSGSLPPLLAVAG--GWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLA 221 (282)
T ss_pred HHHHHHHHHHcCCCcHHHHHHH--HHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHH
Confidence 5554 45677888877554443 579999999999999999999999999999999999998777665544
No 46
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.96 E-value=1.9e-27 Score=223.07 Aligned_cols=188 Identities=32% Similarity=0.537 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc--CCCCCCCCccccCHHHHHHH
Q 017603 97 PPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQ 172 (369)
Q Consensus 97 ~l~~~~~l~G~~~~--g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~--~~~~RPl~sG~is~~~a~~~ 172 (369)
..++.+++.|.... +..++.. ....+++..+.+.++|.+||+.|+|+|++ |+|+||+++|+++++++..+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~ 75 (257)
T PF01040_consen 2 PLSFLPVLAGLALASGGPFNWPI------FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIF 75 (257)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHH
Confidence 45667777775443 2333321 22223344467889999999999999999 67899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHH
Q 017603 173 IWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD 252 (369)
Q Consensus 173 ~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~ 252 (369)
+.++.++++++++.. ++..+.+.+++.+.++.|| +|+++||+++++++.+|++++..+.+++++..++.+..
T Consensus 76 ~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (257)
T PF01040_consen 76 ALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPP 147 (257)
T ss_pred HHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHH
Confidence 888888888888544 4556777777777789999 88899999998999999988877777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHH
Q 017603 253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW 298 (369)
Q Consensus 253 ~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~ 298 (369)
.++++...+++..+....+|++|+|+|+++|+||+|+++|++++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 148 PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 8888888888888899999999999999999999999999999987
No 47
>PRK08238 hypothetical protein; Validated
Probab=99.94 E-value=9e-26 Score=230.06 Aligned_cols=235 Identities=18% Similarity=0.209 Sum_probs=181.6
Q ss_pred cccccccceecccCCCCCCCCCCCCCCcCCCCCcchhhhhhccccc-----cccchHHHHHhhhCccchHHHHHHHHHHH
Q 017603 33 VSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAA-----QETNKWKIRLQLTKPVTWPPLIWGIVCGA 107 (369)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~yl~l~RP~~~~l~~~~~l~G~ 107 (369)
+.++++++.|.||+..|.|.+..+.++..+|++.++++..-+++-. ..+.++++|++++||++|...++.. +++
T Consensus 135 ~~l~~~~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~ 213 (479)
T PRK08238 135 EAFGERGFDYAGNSAADLPVWAAARRAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVF-VPL 213 (479)
T ss_pred HHhCccCeeEecCCHHHHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHH-HHH
Confidence 4567778999999999999999999999999999888544433332 4456799999999999999877764 366
Q ss_pred HHhCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 017603 108 AASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLA 184 (369)
Q Consensus 108 ~~~g~~-~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is~~~a~~~~~~l~~~gl~l~ 184 (369)
+.++.+ +.. .+. ..+..+++++++.+++|++||++|+|+|++|+ |+||+++|++|+++++.++.+++++|++++
T Consensus 214 l~a~~~~~~~--~~~-~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~ 290 (479)
T PRK08238 214 LAAHQFGDLQ--ALL-AALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALA 290 (479)
T ss_pred HHhcccCChH--HHH-HHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 655443 221 122 23345556778899999999999999999995 799999999999999999999999999888
Q ss_pred HHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 017603 185 GLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264 (369)
Q Consensus 185 ~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~ 264 (369)
+.+ |+..+.+.+..+++.++||. ++||+++++++++|+.++.-++.|+. +.+ +++..|++++.+ +..
T Consensus 291 ~~l-------~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a~~-~~~s~wll~~~~-~~~ 357 (479)
T PRK08238 291 LAL-------GPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-AIG-VALSFWLLAFSM-FFF 357 (479)
T ss_pred HHH-------hHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-Hhc-cCHHHHHHHHHH-HHH
Confidence 776 45455555666677889995 79999999999999888543444444 444 777777776443 334
Q ss_pred HHHHHHhhccChHHhHHCCC
Q 017603 265 LGIAIVNDFKSVEGDRAMGL 284 (369)
Q Consensus 265 ~~~~~~~~~~D~e~D~~aG~ 284 (369)
+.+.+.+.+.|.+.++..|.
T Consensus 358 l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 358 LSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHHHhHHHHHHHHhcCC
Confidence 55788999999999998886
No 48
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=3.6e-27 Score=221.48 Aligned_cols=309 Identities=18% Similarity=0.155 Sum_probs=222.6
Q ss_pred cccccccCCCCccccccccccceecccCCCCCCCCCCCCCC-----------cCCCCCcchhhhhhccccc---------
Q 017603 19 TNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDK-----------APAASGSSFNQLLGIKGAA--------- 78 (369)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--------- 78 (369)
+...|.||...|....|.|+-....+...++.-+...++.- +...+.+.+...++ +.
T Consensus 12 ~~~~~trp~p~p~~~~~~~~~~a~~~k~q~~~~~~~~~~~is~s~~d~~~~~a~~~pd~~v~~~~~---~~~s~~l~ly~ 88 (409)
T KOG1380|consen 12 SRISQTRPLPNPVLIPFSRETSAVNSKSQPTVMTTLTAKLISLSRKDANTVFATATPDSQVTATTG---RWSSRPLALYT 88 (409)
T ss_pred ceeeeccCCCCCccchhhhhhhcccccccCcccccccccceecccCccccchhhcCCCcceeecch---hhcccchhhcC
Confidence 34566777777888888876555555444443333333210 01111111111122 22
Q ss_pred cccchHHHHHhhhCccchHHHHHHHHHHHHHh-CCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--C
Q 017603 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P 155 (369)
Q Consensus 79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~-g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~ 155 (369)
-+....+.|+||+||+...+++.+...|++++ +.+++. .+++..++..++.+++|.+||++|...|..|+ +
T Consensus 89 lp~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~ 162 (409)
T KOG1380|consen 89 LPGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQ 162 (409)
T ss_pred CCcchHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhc
Confidence 11234679999999999999999999999876 455554 24455556677888999999999999999998 5
Q ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHh-eeecCCCCCCcccccchhhHHHHHHH
Q 017603 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 156 ~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l-~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
+||+++|++||.+|+.++.+....|..+..+- + ||+...+|...+++ +.+|| ++||... .|.++|...
T Consensus 163 ~Rplv~g~isp~hA~~fAt~~g~~G~slL~~g---v---Npl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavV 231 (409)
T KOG1380|consen 163 NRPLVRGRISPLHAVTFATLTGTAGVSLLAFG---V---NPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVV 231 (409)
T ss_pred ccccccCccChHHHHHHHHHhccccceeeeec---c---cHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHh
Confidence 99999999999999999988888887766542 1 88889999888764 88999 8999987 599999999
Q ss_pred hHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeC---hhhHHHHHHHHHHHHHHH
Q 017603 235 ISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFG---PETAKWICVGAIDITQIS 310 (369)
Q Consensus 235 g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G---~~~a~~~~~~~~~l~~l~ 310 (369)
|++|. +||.+++|.+++..|+++.+.+.|++-..-.-...-++|+.++|.+++++.-. ++.+.+....++.++
T Consensus 232 GAIPPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~--- 308 (409)
T KOG1380|consen 232 GAIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLS--- 308 (409)
T ss_pred ccCCccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhh---
Confidence 99964 68889999999999999999999987543332333457888999999999873 344555555443332
Q ss_pred HHHHHhhhhh-hhhhH-HHHHHHHHHHHHHHHHHHhcCCchhhhh
Q 017603 311 VAASLPTQIR-ISTRD-SRPLTSDIDQLRCFAEVLFTDDSRNAYN 353 (369)
Q Consensus 311 ~~~~l~~~l~-~~~~~-~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 353 (369)
+....++ .++|| +-.+.++..+.|..+++++++|.+++|+
T Consensus 309 ---~~~~~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRk 350 (409)
T KOG1380|consen 309 ---YAAPSTDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARK 350 (409)
T ss_pred ---ccccccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHH
Confidence 2221223 35666 7889999999999999999998777554
No 49
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=3e-26 Score=210.80 Aligned_cols=208 Identities=25% Similarity=0.306 Sum_probs=173.3
Q ss_pred cchHHHHHhhh---CccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHH-HHHHhhhhcccccccccccCC--
Q 017603 81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINE-- 154 (369)
Q Consensus 81 ~~~~k~yl~l~---RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l-~~~a~~~iNd~~D~~~D~~~~-- 154 (369)
..+||.|.|+. ||....+..+|+.+..+++......+ . . .++.+|-.|.+ +++++|++||++|+|+|++.+
T Consensus 61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p-~-~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRt 137 (353)
T KOG1381|consen 61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP-S-I-KMLALFGVGALLMRGAGCTINDLWDKDLDAKVERT 137 (353)
T ss_pred CccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc-h-h-HHHHHhcccHHHhccCCceehhhhhhhhhhhHhhh
Confidence 34699999988 59999999999999987653221111 1 1 24555555555 789999999999999999988
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHH
Q 017603 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY 234 (369)
Q Consensus 155 ~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~ 234 (369)
+.||+++|++|++|++.+-.+.+.+|+++...+ |+....++..++.+.+.|+ -+||.++++++++|.+|
T Consensus 138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~yp----l~kr~TY~pq~vLgltf 206 (353)
T KOG1381|consen 138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYP----LMKRFTYWPQLVLGLTF 206 (353)
T ss_pred cccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEee----hhhhcchhHHHHHhhhc
Confidence 589999999999999999888888999988887 5667888988888999999 49999999999999999
Q ss_pred hHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603 235 ISLPWWAGQALFGTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 235 g~lp~~~~~a~~g~~~~~~~-ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
+...++||.+.-|+..+.+. -+.+.-..|++.++.++..+|.++|.++|+|+.+.++|+++..|+..+
T Consensus 207 nwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf 275 (353)
T KOG1381|consen 207 NWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGF 275 (353)
T ss_pred chhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhh
Confidence 98888999988898877433 344455679999999999999999999999999999999999988764
No 50
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=2.1e-24 Score=204.91 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=141.6
Q ss_pred HHHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHhe
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLS 209 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~ 209 (369)
.+.+..+++|++|||+|+|+|++|+|+||+|||++|+++++.++.++.++++.+.... ...+...++.
T Consensus 54 ~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~ 121 (299)
T PRK13592 54 TVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFL 121 (299)
T ss_pred HHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999988866666665443 1122233344
Q ss_pred eec-----CCCCCCcccccchhhHHHHHHHhHHHHHH--HH------HHhcCCCH--HHHHHHHHHHHHHHHHHHHhhcc
Q 017603 210 YIY-----SAPPLKLKQNGWIGNFALGASYISLPWWA--GQ------ALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFK 274 (369)
Q Consensus 210 ~~Y-----s~pP~~LKr~~~~g~l~vg~~~g~lp~~~--~~------a~~g~~~~--~~~ll~~~~~l~~~~~~~~~~~~ 274 (369)
+.| +. ++|+.++.||+.++...|.....+ .+ ...|.... ..+++++..++..+++++.+|++
T Consensus 122 ~lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~Kdie 198 (299)
T PRK13592 122 YIYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIR 198 (299)
T ss_pred HHHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455 75 899999999999998877543211 11 11232221 12566677888889999999999
Q ss_pred ChHHhHHCCCccccEEeChhhHHHHHHHHHHHHHHHHHHHHhhh-hh-hhhhHHHHHHHHHHHHHHHHHHHhcCCc
Q 017603 275 SVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAASLPTQ-IR-ISTRDSRPLTSDIDQLRCFAEVLFTDDS 348 (369)
Q Consensus 275 D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~~l~~~-l~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (369)
| |||++ |.+|+|+.+|.|++.++...+..++.+ .+.++.. .+ .+. ...++.++..+++.++++|++++
T Consensus 199 D-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~--~s~lp~~~~g~~g~--~~l~~~~~~~l~~~~~~lk~p~~ 268 (299)
T PRK13592 199 A-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL--TNFALLWNISHVGV--VVLVLNVIWMTVQFEQFIKSPTR 268 (299)
T ss_pred C-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH--HhhHHHHHhhhhHH--HHHHHHHHHHHHHHHHHhcCCCc
Confidence 9 88886 599999999999999888765544322 2222211 11 122 44556667888999999999866
No 51
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=9.1e-24 Score=202.13 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=126.9
Q ss_pred HHHHHHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHhee
Q 017603 131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY 210 (369)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~ 210 (369)
+.+...++|++|||+|+|+|++|+|+||.+ +++.++.++.+..++|+.+++.. ++ ..+++++.+.++
T Consensus 67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~-------g~--~ll~ll~~l~g~ 133 (307)
T PRK13591 67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMD-------GM--LLLAFLPFITGY 133 (307)
T ss_pred HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHH-------hH--HHHHHHHHHHHH
Confidence 445678999999999999999999999986 77888887777777787777655 33 235677778899
Q ss_pred ecCCC----CC--CcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCC
Q 017603 211 IYSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL 284 (369)
Q Consensus 211 ~Ys~p----P~--~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~ 284 (369)
.||.+ |+ ++|..+..||+.+|..+|...+.+.....+.+ ......++......++.+.+||++|+|+|+++|+
T Consensus 134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~ 212 (307)
T PRK13591 134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGI 212 (307)
T ss_pred HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCC
Confidence 99986 55 77888888999999999875443211112221 1111111111122355668999999999999999
Q ss_pred ccccEEeChhhHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 017603 285 QSLPVAFGPETAKWICVGAIDITQISVAA-SLPTQIR 320 (369)
Q Consensus 285 ~Tl~v~~G~~~a~~~~~~~~~l~~l~~~~-~l~~~l~ 320 (369)
+|+|+++|+++++++...+..++++.++. .+...++
T Consensus 213 kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~ 249 (307)
T PRK13591 213 KTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIA 249 (307)
T ss_pred eeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988877777765533 3333444
No 52
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=188.10 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=118.3
Q ss_pred cccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CC
Q 017603 79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY 156 (369)
Q Consensus 79 ~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~~~~~~~l~~~~a~~l~~~a~~~iNd~~D~~~D~~~~--~~ 156 (369)
+.++++|+|+|++||++|...++....+.+..+..+.. .+.. .+..+++++++++++|++||++|+|+|++|+ |+
T Consensus 6 ~~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~~-~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 6 PPKNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALLK-VLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred ChHHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 34457999999999999998777544333332222211 1112 2334445566788999999999999999984 79
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhHheeecCCCCCCcccccchhhHHHHHHHhH
Q 017603 157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236 (369)
Q Consensus 157 RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~~~~l~l~~~~l~~~Ys~pP~~LKr~~~~g~l~vg~~~g~ 236 (369)
||+++|++|+++++.++.++.++|+++++.+ |+..+.+.+...++.++||. ++|++++++++.++..++
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~- 151 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFV- 151 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHH-
Confidence 9999999999999999999999999888766 44455555566677889995 899999999999888775
Q ss_pred HHHHHHHHHhcCCCHHHHHHH
Q 017603 237 LPWWAGQALFGTLTPDIIVLT 257 (369)
Q Consensus 237 lp~~~~~a~~g~~~~~~~ll~ 257 (369)
++++.+..+.+ .+.+.|++.
T Consensus 152 lr~~~G~~a~~-~~~s~wll~ 171 (295)
T PRK12324 152 LRAIAGGVAIG-VPLSPWLLL 171 (295)
T ss_pred HHHHHHHHHhC-CCccHHHHH
Confidence 45555444443 344445443
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.79 E-value=9.8e-20 Score=164.44 Aligned_cols=264 Identities=17% Similarity=0.184 Sum_probs=193.9
Q ss_pred hhhccccccccchHHHHHhhhCccchHHHHHHHHHHHHHhCCCCCchh-hHHHHHHHHHHHHHHHHHHhhhhcccccc--
Q 017603 71 LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLE-DVAKSIVCMIMSGPCLTGYTQTINDWYDR-- 147 (369)
Q Consensus 71 ~~~~~~~~~~~~~~k~yl~l~RP~~~~l~~~~~l~G~~~~g~~~~~~~-~~~~~~l~~~~a~~l~~~a~~~iNd~~D~-- 147 (369)
+.|--.++...++.+.|+-..||+..-.++.|+.+|-+.+-.-+|.-. .+...++|.+ +...+++++|.+|.|+|.
T Consensus 48 ltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~-avlavh~agnlvntyfdf~k 126 (359)
T KOG4581|consen 48 LTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAF-AVLAVHCAGNLVNTYFDFIK 126 (359)
T ss_pred ccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHh-hheeeecccchhhhhhhhhh
Confidence 445555666778889999999999999999999999765421112110 1111233333 333478999999999997
Q ss_pred cccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH----HHHHHHHHhHheeecCCCCCCccccc
Q 017603 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSAPPLKLKQNG 223 (369)
Q Consensus 148 ~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~~~----~~~l~l~~~~l~~~Ys~pP~~LKr~~ 223 (369)
.+|.+...+|.++...+.+.++..++..+..+|+.....+... .|. ..++...++--.++||.+- .+|+..
T Consensus 127 gid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytggi-gfkyia 201 (359)
T KOG4581|consen 127 GIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTGGI-GFKYIA 201 (359)
T ss_pred ccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEeccc-ceEEEe
Confidence 4788777899999999999999999999999888877655433 231 2233333444578999764 789987
Q ss_pred chhhHHHHHHHhHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603 224 WIGNFALGASYISLPW-WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 224 ~~g~l~vg~~~g~lp~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
+ |++++-+.+|.+.+ +++..++|++.+..+..++|..+-+-++.+.|+.+|.|.||++|+-|+++..|+..+..++..
T Consensus 202 l-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~ 280 (359)
T KOG4581|consen 202 L-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAM 280 (359)
T ss_pred c-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHH
Confidence 6 67777677776654 345678999988888888888888889999999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHhcC
Q 017603 303 AIDITQISVAASLPTQIRISTRD-SRPLTSDIDQLRCFAEVLFTD 346 (369)
Q Consensus 303 ~~~l~~l~~~~~l~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~~~ 346 (369)
++.+.|+.+ ....++.+.|+ ++.+. +|..++..+.+|++
T Consensus 281 llf~py~lf---~i~~~~~si~~~lpllt--ip~afqiek~frne 320 (359)
T KOG4581|consen 281 LLFAPYLLF---FIFALHCSISFALPLLT--IPMAFQIEKQFRNE 320 (359)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhHHhh--chhHHhHHHHhhhH
Confidence 766666433 12234456666 44444 78888889999885
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=89.54 E-value=5.5 Score=37.94 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
.+..++...+-...||+-|+|.|+++ ++.=|..-|+
T Consensus 43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~ 78 (279)
T PRK12884 43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR 78 (279)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence 33445566677899999999999998 7888888775
No 55
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=89.50 E-value=4.3 Score=39.48 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
.+.+.+....||+-|+|.|++.+ ++=|+.-|.
T Consensus 64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~ 95 (306)
T TIGR02056 64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA 95 (306)
T ss_pred HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence 45556678999999999998876 455665554
No 56
>PLN00012 chlorophyll synthetase; Provisional
Probab=88.31 E-value=5.8 Score=39.86 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
+.+.+-..+||+-|+|-|++++ +.=|+.-|.
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~ 164 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINE-PYRPIPSGA 164 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCC-CCCCcCCCc
Confidence 3344567899999999998875 556666664
No 57
>PRK13592 ubiA prenyltransferase; Provisional
Probab=88.26 E-value=13 Score=36.09 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHHHH
Q 017603 253 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICVGA 303 (369)
Q Consensus 253 ~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~~~ 303 (369)
.++.++..++...+-...||+.|+|-|+.+ ++.=|+--|+ |.++.....+
T Consensus 48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 48 EFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence 333344455566677899999999999765 6777776664 5555554443
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.24 E-value=2.1 Score=40.86 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=26.2
Q ss_pred HHHhhhhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHH
Q 017603 135 TGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLL 177 (369)
Q Consensus 135 ~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~ 177 (369)
...-+++||.-|+|.|+++. +.=|..-|+ +.+..+..++.
T Consensus 174 ~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~ 214 (285)
T PRK12872 174 SFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILN 214 (285)
T ss_pred HHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHH
Confidence 44556889999999999876 566765554 44444433333
No 59
>PRK13595 ubiA prenyltransferase; Provisional
Probab=87.64 E-value=8.3 Score=37.41 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHhhccChHHhHHCCCc
Q 017603 263 AGLGIAIVNDFKSVEGDRAMGLQ 285 (369)
Q Consensus 263 ~~~~~~~~~~~~D~e~D~~aG~~ 285 (369)
......-+||+-|+|.|+++-++
T Consensus 59 ~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 59 FNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHHhhhhhhhhccCCCC
Confidence 34456889999999999887433
No 60
>PRK13591 ubiA prenyltransferase; Provisional
Probab=86.85 E-value=1.7 Score=42.32 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=38.6
Q ss_pred hhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHHHH---HHHHHHHHHHhhcccchHHHHHH-HHHhHheeecCC
Q 017603 140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLA---GLGLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA 214 (369)
Q Consensus 140 ~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~---gl~l~~~l~~~~~~~~~~~~~l~-l~~~~l~~~Ys~ 214 (369)
.+||+-|.|.|+.+. +.=|+.=|+ +.+..+...+.++ ..+++..++... ..|...+.. +.+++....|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999887 455665553 3333333222222 222222233221 134434433 445556778887
Q ss_pred CC
Q 017603 215 PP 216 (369)
Q Consensus 215 pP 216 (369)
|+
T Consensus 272 ~~ 273 (307)
T PRK13591 272 PF 273 (307)
T ss_pred Cc
Confidence 64
No 61
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=86.37 E-value=8.5 Score=35.52 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=31.5
Q ss_pred cCCCHHHHHH-HHHHHHHHHHHHHHhhccChHHhHHC-CCccccEEeChh
Q 017603 247 GTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGPE 294 (369)
Q Consensus 247 g~~~~~~~ll-~~~~~l~~~~~~~~~~~~D~e~D~~a-G~~Tl~v~~G~~ 294 (369)
+..++..... .+..++...+....||+.|.|.|+.+ +++.-|..-|+-
T Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i 67 (257)
T PF01040_consen 18 GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRI 67 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHH
Confidence 3455543333 33344566678899999999999996 456666665543
No 62
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=85.94 E-value=9.6 Score=36.98 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhccChHHhHHC-CCccccEEeCh
Q 017603 257 TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGP 293 (369)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~D~e~D~~a-G~~Tl~v~~G~ 293 (369)
++.+++...+....||+.|+|.|+++ .++.=|..-|+
T Consensus 52 fl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 52 FVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 33344455667899999999999997 45555665554
No 63
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.66 E-value=6.6 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
...+.+.+-..+|++.|+|.|++.. |.=|+.-|.
T Consensus 167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 3344566678999999999999877 666775564
No 64
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=85.36 E-value=14 Score=35.37 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 255 ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
+..+..++...+....||+.|+|-|+++-. +.=|..-|+
T Consensus 51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 344445566777899999999999999855 566776665
No 65
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.95 E-value=7.3 Score=38.43 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=22.6
Q ss_pred HHHHHhhhhcccccccccccCC-CCCCCCcc
Q 017603 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (369)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG 162 (369)
+...+..++||+-|+|.|+... +.=|+.=|
T Consensus 191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 191 FMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 4455667899999999999876 55676445
No 66
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=84.46 E-value=17 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 258 ~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
+..++...+-...||+-|+|-|+.+. +.=|..-|+
T Consensus 45 l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~ 79 (276)
T PRK12882 45 AAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCC
Confidence 34445566678999999999999754 777877775
No 67
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=83.94 E-value=11 Score=36.30 Aligned_cols=53 Identities=15% Similarity=-0.042 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHHHHHHHHHH
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGLGLAG 185 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~ 185 (369)
++.+...+...+||+-|+|.|++.. +.=|..-| .+.+..+..++..++.++..
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG---~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLG---ERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchhhcc---HhhHHHHHHHHHHHHHHHHH
Confidence 3345566778999999999999776 45555333 44555555555555544433
No 68
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=83.64 E-value=12 Score=36.24 Aligned_cols=33 Identities=15% Similarity=-0.007 Sum_probs=25.0
Q ss_pred HHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
..+.+.+-..+|++.|+|.|++.. |.=|+.-|+
T Consensus 176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 344566667899999999998776 677776664
No 69
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=83.59 E-value=7.3 Score=37.98 Aligned_cols=26 Identities=12% Similarity=-0.045 Sum_probs=19.6
Q ss_pred HHHHhhhhcccccccccccCCC-CCCC
Q 017603 134 LTGYTQTINDWYDREIDAINEP-YRPI 159 (369)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~~~~-~RPl 159 (369)
........||+-|+|.|+++.| .=|.
T Consensus 186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v 212 (304)
T PRK07419 186 ATSLILFCSHFHQVEDDLAAGKRSPIV 212 (304)
T ss_pred HHHHHHHHcCCcchhhHHHcCCcceee
Confidence 3455667899999999999875 3344
No 70
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=82.90 E-value=13 Score=35.35 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhccChHHhHHCCCccccEEeCh
Q 017603 260 YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 260 ~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
.++...+-...||+-|+|.|+.+ +++=|+.-|+
T Consensus 46 ~~~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~ 78 (277)
T PRK12883 46 VYLGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA 78 (277)
T ss_pred HHHHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence 33444567899999999999975 4777777664
No 71
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=82.87 E-value=10 Score=37.05 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHH
Q 017603 263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICV 301 (369)
Q Consensus 263 ~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~ 301 (369)
...+....||+-|+|.|++++ +.=|+.-|. +.+.....
T Consensus 77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~ 117 (314)
T PRK07566 77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIA 117 (314)
T ss_pred HHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHH
Confidence 445567999999999998764 555655554 44444433
No 72
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=82.56 E-value=20 Score=34.59 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 260 ~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
.++...+-...||+.|+|-|+++.+ +.-|..-|+
T Consensus 54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 3455566789999999999998766 578888885
No 73
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=81.83 E-value=7.3 Score=37.25 Aligned_cols=29 Identities=24% Similarity=0.153 Sum_probs=21.5
Q ss_pred HHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 135 TGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 135 ~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
..+...+||+-|.|.|+++. +.=|+.-|+
T Consensus 174 ~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 174 AHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 44567899999999999876 455665553
No 74
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=81.62 E-value=5.9 Score=38.42 Aligned_cols=31 Identities=23% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
+.+..-..+||+.|+|.|+++. |.=|+.-|+
T Consensus 186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 3456667899999999999876 667776665
No 75
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=81.37 E-value=7.7 Score=37.17 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
+..+.+..-..+|++.|+|.|++.. |.=|+.-|+
T Consensus 168 ~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 168 ANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 4444566677899999999999876 667776664
No 76
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=81.17 E-value=20 Score=34.53 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh---hhHHHHH
Q 017603 248 TLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP---ETAKWIC 300 (369)
Q Consensus 248 ~~~~~~~l-l~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~---~~a~~~~ 300 (369)
..++...+ ..+..++...+-...||+.|+|-|+++.+ +.=|+.-|+ +.+..+.
T Consensus 40 ~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~ 97 (296)
T PRK04375 40 VPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFG 97 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHH
Confidence 34543332 22334445566789999999999998643 445555564 4444443
No 77
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=80.99 E-value=23 Score=33.76 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhccChHHhHHCCCccccEEeCh---hhHHHHHH
Q 017603 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP---ETAKWICV 301 (369)
Q Consensus 258 ~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~---~~a~~~~~ 301 (369)
+..++...+-...||+-|+|.|+++. +.=|..-|+ +.+..+..
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~ 89 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSI 89 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHH
Confidence 34455666778999999999999864 666666664 44444443
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=80.79 E-value=29 Score=33.78 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.4
Q ss_pred HhhccChHHhHHCCCccccEEeCh
Q 017603 270 VNDFKSVEGDRAMGLQSLPVAFGP 293 (369)
Q Consensus 270 ~~~~~D~e~D~~aG~~Tl~v~~G~ 293 (369)
.||+.|+|-|+.+ +++.|+.-|+
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcc
Confidence 9999999999964 6888887765
No 79
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=79.62 E-value=13 Score=35.77 Aligned_cols=39 Identities=8% Similarity=-0.080 Sum_probs=25.2
Q ss_pred HHHHhhhhcccccccccccCCC-CCCCCccccCHHHHHHHHHH
Q 017603 134 LTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWV 175 (369)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~~~~-~RPl~sG~is~~~a~~~~~~ 175 (369)
...+....||+-|+|.|+++.| .=++- +-++.+......
T Consensus 173 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~l~~~ 212 (285)
T TIGR02235 173 ATTLILFCSHFHQVEDDLAHGKRSPVVR---LGTKLAAKIVPW 212 (285)
T ss_pred HHHHHHHhcCCccchhHHHcCCcceehe---ecHHhHHHHHHH
Confidence 4556678999999999998875 33443 334444443333
No 80
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=79.59 E-value=24 Score=33.68 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=29.9
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 248 TLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 248 ~~~~~~~l-l~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
..++..++ .++..++...+-...||+-|+|-|+++.+ +.=|..-|+
T Consensus 32 ~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 32 GVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 34543333 33344455667789999999999998754 445555554
No 81
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=79.48 E-value=28 Score=33.91 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=30.7
Q ss_pred cCCCHHHHHHH-HHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 247 g~~~~~~~ll~-~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
++.++...+++ +..++...+-...||+.|+|-|++..+ +.=|+.-|+
T Consensus 42 ~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 42 GHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 44555433332 234455567789999999999998755 356666665
No 82
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=79.16 E-value=30 Score=33.41 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=25.6
Q ss_pred hcCCCHHHHHHHH-HHHHHHHHHHHHhhccChHHhHHCC
Q 017603 246 FGTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEGDRAMG 283 (369)
Q Consensus 246 ~g~~~~~~~ll~~-~~~l~~~~~~~~~~~~D~e~D~~aG 283 (369)
.|++++...++++ ..++...+....||+.|.|.|....
T Consensus 34 ~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~ 72 (296)
T PRK05951 34 FRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH 72 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Confidence 3678876655443 3445667788999999966666554
No 83
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=79.04 E-value=8.3 Score=37.23 Aligned_cols=36 Identities=22% Similarity=0.035 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 128 IMSGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 128 ~~a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
+++..+-..+-.++.++.|+|.|++.. ++-|+.=|+
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 334445566667999999999999877 666665453
No 84
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=78.85 E-value=34 Score=32.75 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 261 SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
++...+-...||+-|+|-|++..+ +.=|..-|+
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 85 (282)
T PRK12848 52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGA 85 (282)
T ss_pred HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCC
Confidence 445566789999999999987554 356666665
No 85
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.83 E-value=9.3 Score=36.61 Aligned_cols=33 Identities=21% Similarity=-0.011 Sum_probs=24.2
Q ss_pred HHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 131 ~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
..+.+..-..+|++.|+|.|+++. |.=|+.-|.
T Consensus 174 ~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 174 CIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 344555666889999999999877 566766664
No 86
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=78.73 E-value=11 Score=36.04 Aligned_cols=31 Identities=23% Similarity=0.065 Sum_probs=23.3
Q ss_pred HHHHHHhhhhcccccccccccCC-CCCCCCcc
Q 017603 132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (369)
Q Consensus 132 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG 162 (369)
.+.+..-..+||..|+|.|++.. |.=|+.-|
T Consensus 168 ~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 168 GFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 34455667899999999998776 66677666
No 87
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=77.33 E-value=38 Score=32.86 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 260 ~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
.++...+-...||+-|+|-|+++.+ +.=|+.-|+
T Consensus 53 ~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~ 87 (294)
T PRK12873 53 GLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGK 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCC
Confidence 3445566789999999999998876 577877775
No 88
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=77.09 E-value=35 Score=32.89 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=30.0
Q ss_pred cCCCHHHHHHH-HHHHHHHHHHHHHhhccChHHhHHCCCc-cccEEeCh
Q 017603 247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGP 293 (369)
Q Consensus 247 g~~~~~~~ll~-~~~~l~~~~~~~~~~~~D~e~D~~aG~~-Tl~v~~G~ 293 (369)
+..++..++++ +..++...+-...||+-|+|-|++..+. .=|..-|+
T Consensus 41 ~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~ 89 (290)
T PRK12870 41 GLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRR 89 (290)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCC
Confidence 44454433333 2344456667899999999999876543 56666665
No 89
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=77.08 E-value=15 Score=35.15 Aligned_cols=44 Identities=23% Similarity=0.130 Sum_probs=27.1
Q ss_pred HHHHHhhhhcccccccccccCC-CCCCCCccccCHHHHHHHHHHHHHH
Q 017603 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLA 179 (369)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~ 179 (369)
+........||+-|+|.|+++. +.=|..=| .+.+..+...+..+
T Consensus 179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~ 223 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLAL 223 (293)
T ss_pred HHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHH
Confidence 3455667899999999999876 34455344 34444433333333
No 90
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=76.80 E-value=30 Score=33.31 Aligned_cols=20 Identities=20% Similarity=-0.016 Sum_probs=14.9
Q ss_pred HHhhccChHHhHHCCCcccc
Q 017603 269 IVNDFKSVEGDRAMGLQSLP 288 (369)
Q Consensus 269 ~~~~~~D~e~D~~aG~~Tl~ 288 (369)
-.||+-|.|.|..+.++.=+
T Consensus 52 ~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 52 GINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred hhhhhhhhhcCCCCcccCCC
Confidence 45999999998887665444
No 91
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=75.85 E-value=24 Score=34.42 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=20.5
Q ss_pred HHHHHhhhhcccccccccccCCCCC
Q 017603 133 CLTGYTQTINDWYDREIDAINEPYR 157 (369)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~~~~~R 157 (369)
+..+..+..|+.-|.|+|++|.|+-
T Consensus 187 il~~~Il~aNNirDie~D~~~gk~T 211 (303)
T COG1575 187 ILIANILLANNLRDIEEDIRNGKYT 211 (303)
T ss_pred HHHHHHHHhcccccchhHHhcCCcc
Confidence 3456778899999999999998754
No 92
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=74.73 E-value=18 Score=34.95 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=22.7
Q ss_pred HHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 133 CLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 133 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
+.+.+-..+|++.|+|.|++.. |.=|+.-|+
T Consensus 173 lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 173 FWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3455555788889999999776 777777665
No 93
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=74.38 E-value=44 Score=31.86 Aligned_cols=44 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh---hhHHHHHH
Q 017603 258 LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP---ETAKWICV 301 (369)
Q Consensus 258 ~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~---~~a~~~~~ 301 (369)
+..++...+-...||+-|+|-|+++.+ +.=|+.-|+ +.+..+..
T Consensus 42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~ 89 (280)
T TIGR01473 42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGL 89 (280)
T ss_pred HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHH
Confidence 344455667789999999999998543 455665554 44444433
No 94
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=73.76 E-value=9.8 Score=36.99 Aligned_cols=33 Identities=15% Similarity=-0.052 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhhcccccccccccCC-CCCCCCcc
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSG 162 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG 162 (369)
+..+.+.+-.++|+..|+|.|++.. ++=|+.=|
T Consensus 185 ~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 185 GTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 4444566677999999999999776 66677555
No 95
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=73.69 E-value=13 Score=36.29 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=25.2
Q ss_pred HHHHhhhhcccccccccccCCC-CCCCCccccCHHHHHHHHHH
Q 017603 134 LTGYTQTINDWYDREIDAINEP-YRPIPSGAISENEVITQIWV 175 (369)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~~~~-~RPl~sG~is~~~a~~~~~~ 175 (369)
..+.....||+-|+|.|+++.| .=|..=| ++.+.....+
T Consensus 201 l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~ 240 (317)
T PRK13387 201 TIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAI 240 (317)
T ss_pred HHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHH
Confidence 3455578999999999998875 3344333 4444444333
No 96
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=72.02 E-value=20 Score=35.10 Aligned_cols=34 Identities=24% Similarity=0.034 Sum_probs=24.1
Q ss_pred HHHHHHHHhhhhcccccccccccCC-CCCCCCccc
Q 017603 130 SGPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA 163 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 163 (369)
...+.+..-..++++.|+|.|++.. |.=|+.-|.
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3344455566778999999999876 666776665
No 97
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=71.23 E-value=74 Score=28.13 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHhhhhcccccccccccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hHHHHHHHHHhHheee
Q 017603 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDF---PTIFWLAVGGSLLSYI 211 (369)
Q Consensus 135 ~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l~~~~~~~~---~~~~~l~l~~~~l~~~ 211 (369)
..+++..++.-+...++..+|+ -.++..++...+....+..+++.++.+..+... ...+.+.++-.++...
T Consensus 20 a~gs~~~~~~~~~wy~~L~kP~------w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~a 93 (161)
T COG3476 20 ALGSFFISSRDPNWYNNLKKPF------WLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYLLQLILNFA 93 (161)
T ss_pred HHHHHHhccccHHHHHhccCCC------CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Confidence 3344455555554445444431 123344444433333333333334433322111 1223333344456778
Q ss_pred cCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 017603 212 YSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264 (369)
Q Consensus 212 Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~ 264 (369)
|| |+-.|-+.+......++.. .+..+....+.-..+..+-.+.+|+.+|.
T Consensus 94 ws--piff~l~~l~~a~i~~lll-~~~vl~l~i~~~~~s~~As~LLiPYllW~ 143 (161)
T COG3476 94 WS--PIFFGLRSLGAALIIILLL-WIAVLVLTIIVWPISKTASLLLIPYLLWS 143 (161)
T ss_pred HH--HHHHhhcCcchHHHHHHHH-HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 88 3344543332223332221 22222223344456776677777888885
No 98
>PRK08238 hypothetical protein; Validated
Probab=69.53 E-value=42 Score=34.86 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhccChHHhHHCC-CccccEEeCh
Q 017603 257 TLLYSIAGLGIAIVNDFKSVEGDRAMG-LQSLPVAFGP 293 (369)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~D~e~D~~aG-~~Tl~v~~G~ 293 (369)
++.+++...+....||+-|+|.|+++- ++.=|..-|+
T Consensus 232 f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~ 269 (479)
T PRK08238 232 FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGA 269 (479)
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCC
Confidence 334455666788999999999999983 4666776665
No 99
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=69.39 E-value=31 Score=33.19 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=23.0
Q ss_pred HHHhhhhcccccccccccCCCC-CCCCccccCHHHHHHH
Q 017603 135 TGYTQTINDWYDREIDAINEPY-RPIPSGAISENEVITQ 172 (369)
Q Consensus 135 ~~a~~~iNd~~D~~~D~~~~~~-RPl~sG~is~~~a~~~ 172 (369)
..+....||+-|.|.|+++.|+ =|.-=| .+.+...
T Consensus 177 ~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG---~~~a~~l 212 (284)
T TIGR00751 177 ACAVLNINNLRDIPTDARAGKNTLAVRLG---DARTRMY 212 (284)
T ss_pred HHHHHHHcCcccchhHHHcCCEeehhhcc---hHhHHHH
Confidence 4555679999999999988753 344333 4444443
No 100
>PLN02922 prenyltransferase
Probab=69.29 E-value=21 Score=34.95 Aligned_cols=36 Identities=8% Similarity=-0.069 Sum_probs=23.9
Q ss_pred HHHHhhhhcccccccccccCCCC-CCCCccccCHHHHHHH
Q 017603 134 LTGYTQTINDWYDREIDAINEPY-RPIPSGAISENEVITQ 172 (369)
Q Consensus 134 ~~~a~~~iNd~~D~~~D~~~~~~-RPl~sG~is~~~a~~~ 172 (369)
........||+-|+|.|+++.|+ =|..=| ++.+..+
T Consensus 200 l~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l 236 (315)
T PLN02922 200 TTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRV 236 (315)
T ss_pred HHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHH
Confidence 34466789999999999998753 344333 4444443
No 101
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=55.06 E-value=73 Score=31.03 Aligned_cols=38 Identities=16% Similarity=-0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 256 l~~~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
..+.+++.-.+-...||+-|+|-|+++-+ +.=|..-|+
T Consensus 52 ~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~ 90 (300)
T PRK12876 52 GGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL 90 (300)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence 34444555566789999999999999865 566666675
No 102
>PLN02776 prenyltransferase
Probab=52.59 E-value=1.4e+02 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhccChHHhHHCCC-ccccEEeCh
Q 017603 259 LYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP 293 (369)
Q Consensus 259 ~~~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G~ 293 (369)
..++...+-...||+-|+|-|+++.+ +.=|+.-|+
T Consensus 37 g~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 37 GTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 34455566789999999999998765 456666665
No 103
>PLN02878 homogentisate phytyltransferase
Probab=30.94 E-value=2.7e+02 Score=26.90 Aligned_cols=27 Identities=22% Similarity=0.030 Sum_probs=20.5
Q ss_pred HHhhhhcccccccccccCC-CCCCCCcc
Q 017603 136 GYTQTINDWYDREIDAINE-PYRPIPSG 162 (369)
Q Consensus 136 ~a~~~iNd~~D~~~D~~~~-~~RPl~sG 162 (369)
.....+||+-|.|-|++.. +.=|+.-|
T Consensus 170 ~~i~i~KDi~DieGD~~~Gi~Tlpv~lG 197 (280)
T PLN02878 170 VVIALFKDIPDVEGDRIFGIRSFSVRLG 197 (280)
T ss_pred HHHHHHhhCcCchhHHHCCCceechhhC
Confidence 3456999999999999877 55666444
No 104
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=27.88 E-value=2.3e+02 Score=26.30 Aligned_cols=38 Identities=24% Similarity=0.102 Sum_probs=26.7
Q ss_pred eeecCCCCCCcccccchhhHHHHHHHhHHHHHHHHHHhcCC
Q 017603 209 SYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL 249 (369)
Q Consensus 209 ~~~Ys~pP~~LKr~~~~g~l~vg~~~g~lp~~~~~a~~g~~ 249 (369)
...|+. ..+|++++ .++++|...|.+.-..|+...|++
T Consensus 142 ~v~~sR--Vyl~yHt~-sQVv~G~ivG~l~g~~Wf~~v~sl 179 (228)
T KOG3146|consen 142 YVCYSR--VYLKYHTL-SQVVVGAIVGGLVGILWFYLVNSL 179 (228)
T ss_pred HHHHHH--HHHHhccH-HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 446663 45889987 799999888877655666555654
No 105
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.51 E-value=2.2e+02 Score=23.59 Aligned_cols=36 Identities=33% Similarity=0.363 Sum_probs=23.4
Q ss_pred cccCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 017603 150 DAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLL 187 (369)
Q Consensus 150 D~~~~~~RPl~sG~is~~~a~~~~~~l~~~gl~l~~~l 187 (369)
|+.|. -|.+=+-+|..|.+..+.+...+++.+++.+
T Consensus 6 ~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l 41 (111)
T TIGR03750 6 DRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGLLL 41 (111)
T ss_pred hhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 2444455788998887777777777666544
No 106
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=7e+02 Score=24.41 Aligned_cols=55 Identities=25% Similarity=0.379 Sum_probs=32.1
Q ss_pred cCCCHHHHHHHHHH-HHHHHHHHHHhhccChHHhHHCCC-ccccEEeC---hhhHHHHHH
Q 017603 247 GTLTPDIIVLTLLY-SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFG---PETAKWICV 301 (369)
Q Consensus 247 g~~~~~~~ll~~~~-~l~~~~~~~~~~~~D~e~D~~aG~-~Tl~v~~G---~~~a~~~~~ 301 (369)
+..++..++..+.. .+-.-+-...|++-|+|=|++..+ +.=|+.-| ++.+.....
T Consensus 47 ~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl 106 (304)
T COG0109 47 GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGL 106 (304)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHH
Confidence 56666555544332 333445678899999999988742 23344445 444544443
No 107
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=22.20 E-value=39 Score=30.83 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccChHHhH----------HCCCccccEEeChhhHH
Q 017603 262 IAGLGIAIVNDFKSVEGDR----------AMGLQSLPVAFGPETAK 297 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~D~----------~aG~~Tl~v~~G~~~a~ 297 (369)
-+..++.+.||++|+.+|. +.|+.|+|.....+...
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~ 202 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAA 202 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHH
Confidence 3456678999999988877 89999999988744433
No 108
>PRK10581 geranyltranstransferase; Provisional
Probab=21.63 E-value=50 Score=31.99 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 261 SIAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
--+..++.+.+|+.|+. .|.+.|+.|+|+.+|.+.+.....-
T Consensus 213 ~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~ 265 (299)
T PRK10581 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARD 265 (299)
T ss_pred HHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHH
Confidence 34566788999999874 4677899999999998887765543
No 109
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=21.50 E-value=94 Score=30.43 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhccChHH-----------hHHCCCccccEEeChhhH
Q 017603 231 GASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETA 296 (369)
Q Consensus 231 g~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~~G~~~a 296 (369)
|..++..+..++....+. .-..=-+.-+.--..+++.+.+|+-|+.+ |.+.|++|+|+.++.+.+
T Consensus 175 a~L~~~a~~~ga~la~~~-~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~ 250 (322)
T COG0142 175 AALFAAAAVLGAILAGAD-EELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKA 250 (322)
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcC
Done!