Query 017603
Match_columns 369
No_of_seqs 249 out of 2117
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lsn_A Geranyltranstransferase 35.8 38 0.0013 31.5 4.8 42 261-302 213-265 (304)
2 3p8l_A Geranyltranstransferase 34.2 38 0.0013 31.6 4.5 41 262-302 217-268 (302)
3 3m0g_A Farnesyl diphosphate sy 30.8 60 0.0021 30.1 5.3 42 261-302 206-258 (297)
4 3pde_A Farnesyl-diphosphate sy 29.5 40 0.0014 31.6 3.8 41 262-302 216-267 (309)
5 3uca_A Geranyltranstransferase 29.4 50 0.0017 31.1 4.5 41 262-302 242-293 (324)
6 2h8o_A Geranyltranstransferase 28.2 53 0.0018 31.0 4.5 41 262-302 253-304 (335)
7 3ts7_A Geranyltranstransferase 27.6 41 0.0014 31.7 3.5 41 262-302 220-271 (324)
8 3llw_A Geranyltranstransferase 27.5 64 0.0022 30.1 4.9 42 261-302 220-270 (311)
9 4f62_A Geranyltranstransferase 27.4 51 0.0017 30.9 4.1 42 262-303 213-265 (317)
10 3lom_A Geranyltranstransferase 27.2 16 0.00056 34.3 0.7 41 262-302 221-272 (313)
11 1rtr_A Geranyltranstransferase 24.2 63 0.0022 29.9 4.1 41 262-302 209-260 (301)
12 3p8r_A Geranyltranstransferase 20.3 22 0.00076 33.1 0.1 41 262-302 220-271 (302)
13 2j1p_A Geranylgeranyl pyrophos 20.2 86 0.0029 28.9 4.1 38 262-302 224-261 (293)
No 1
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=35.82 E-value=38 Score=31.54 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEeChhhHHHHHHH
Q 017603 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
--+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 213 ~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 265 (304)
T 3lsn_A 213 QAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALE 265 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHH
Confidence 345667788999988755 667899999999999988766554
No 2
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=34.22 E-value=38 Score=31.58 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-+..++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-
T Consensus 217 ~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~ 268 (302)
T 3p8l_A 217 HYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTH 268 (302)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3556678888887763 5788899999999999988766544
No 3
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=30.83 E-value=60 Score=30.06 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccChHH-----------hHHCCCccccEEeChhhHHHHHHH
Q 017603 261 SIAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
--+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 206 ~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~ 258 (297)
T 3m0g_A 206 TALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258 (297)
T ss_dssp HHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 345667889999999855 677899999999999888765544
No 4
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=29.55 E-value=40 Score=31.57 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-...++.+.+|+.|+. .|.+.|+.|+|+.+|.+++.....-
T Consensus 216 ~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~ 267 (309)
T 3pde_A 216 AFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALID 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHH
Confidence 3456678888888874 5778899999999999888654443
No 5
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=29.36 E-value=50 Score=31.11 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-...++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-
T Consensus 242 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~ 293 (324)
T 3uca_A 242 KLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVN 293 (324)
T ss_dssp HHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHH
Confidence 3556678888887763 5788899999999999888766554
No 6
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=28.20 E-value=53 Score=31.01 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-..+++.+.+|+.|+. .|.+.|+.|+|+.+|.+.+.....-
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~ 304 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQE 304 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHH
Confidence 3556678888887775 4677899999999998887765544
No 7
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=27.58 E-value=41 Score=31.68 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-...++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-
T Consensus 220 ~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~ 271 (324)
T 3ts7_A 220 CIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEE 271 (324)
T ss_dssp HHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 4556678888888774 4778899999999999988766554
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=27.54 E-value=64 Score=30.12 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccChHHhH---------HCCCccccEEeChhhHHHHHHH
Q 017603 261 SIAGLGIAIVNDFKSVEGDR---------AMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~D~---------~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
--+..++.+.+|+.|+.+|. +.|+.|+|+.+|.+.+.....-
T Consensus 220 ~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~ 270 (311)
T 3llw_A 220 LKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQT 270 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHH
Confidence 34566788999999988765 5789999999999888655443
No 9
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=27.38 E-value=51 Score=30.95 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVGA 303 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~~ 303 (369)
-...++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-.
T Consensus 213 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~ 265 (317)
T 4f62_A 213 AIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRL 265 (317)
T ss_dssp HHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4556678899988874 46778999999999999887766543
No 10
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=27.19 E-value=16 Score=34.29 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 221 ~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~ 272 (313)
T 3lom_A 221 HIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAV 272 (313)
T ss_dssp HHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHH
Confidence 45566788888888754 678899999999999988766554
No 11
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=24.25 E-value=63 Score=29.92 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccChHH-----------hHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVEG-----------DRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~-----------D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-+..++.+.+|+.|+.+ |.+.|+.|+|+.+|.+.++....-
T Consensus 209 ~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~ 260 (301)
T 1rtr_A 209 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTY 260 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 35566788999988754 567799999999998887765544
No 12
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=20.33 E-value=22 Score=33.12 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-+..++.+.+|+.|+. .|.+.|+.|+|+.+|.+.++....-
T Consensus 220 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~ 271 (302)
T 3p8r_A 220 AVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHT 271 (302)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHH
Confidence 3455677888887764 4678899999999999888766544
No 13
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=20.17 E-value=86 Score=28.85 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHH
Q 017603 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~ 302 (369)
-...++.+.+|+.|+.+|. +.|+|+.+|.+.++....-
T Consensus 224 ~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~ 261 (293)
T 2j1p_A 224 CIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEK 261 (293)
T ss_dssp HHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHH
Confidence 4566788999999999988 8999999998888765544
Done!