Query 017603
Match_columns 369
No_of_seqs 249 out of 2117
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 17:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 72.3 2.8 0.0002 36.6 6.2 37 262-298 208-255 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 29.9 11 0.00077 32.8 2.2 39 262-300 214-263 (299)
3 d1v4ea_ a.128.1.1 (A:) Octopre 20.5 54 0.0039 27.6 5.1 57 246-303 48-104 (280)
4 d1rqja_ a.128.1.1 (A:) Farnesy 13.4 1.2E+02 0.0088 25.4 5.6 48 257-304 70-118 (299)
5 d1fpsa_ a.128.1.1 (A:) Farnesy 10.4 68 0.0049 27.8 2.8 33 262-294 229-271 (348)
6 d1rtra_ a.128.1.1 (A:) Farnesy 9.2 1.8E+02 0.013 24.1 5.2 43 261-303 71-114 (290)
7 d2q80a1 a.128.1.1 (A:6-296) Ge 6.0 2E+02 0.015 23.7 3.9 47 256-303 44-90 (291)
8 d1fpsa_ a.128.1.1 (A:) Farnesy 5.8 3.5E+02 0.026 22.7 5.6 38 262-300 89-126 (348)
9 d1diha2 d.81.1.3 (A:131-240) D 5.0 2.8E+02 0.02 19.5 3.6 29 134-162 10-39 (110)
10 d1iwga8 f.35.1.1 (A:513-566,A: 4.6 4.3E+02 0.031 20.5 5.0 18 130-147 121-138 (222)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=72.34 E-value=2.8 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKW 298 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~ 298 (369)
-...++.+.+|+.|+. .|.+.|++|+|+.+|.+.+..
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 3456678889988875 467789999999998877643
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=29.87 E-value=11 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhccChH-----------HhHHCCCccccEEeChhhHHHHH
Q 017603 262 IAGLGIAIVNDFKSVE-----------GDRAMGLQSLPVAFGPETAKWIC 300 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e-----------~D~~aG~~Tl~v~~G~~~a~~~~ 300 (369)
-+..++.+.+|+.|+. .|.+.|+.|+|+.++.+.+....
T Consensus 214 ~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 3556678888888765 47778999999999988765433
No 3
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=20.47 E-value=54 Score=27.63 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=36.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHH
Q 017603 246 FGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA 303 (369)
Q Consensus 246 ~g~~~~~~~ll~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~ 303 (369)
.+..+...+-++..+=+.-.+..+.+|+.| ++|.+.|.+|.=..+|...+....-.+
T Consensus 48 g~~~~~~~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l 104 (280)
T d1v4ea_ 48 GVEIGEDAISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLV 104 (280)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHH
Confidence 344444444344333344455667788887 667888999999999988876554433
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=13.35 E-value=1.2e+02 Score=25.42 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhccChHH-hHHCCCccccEEeChhhHHHHHHHHH
Q 017603 257 TLLYSIAGLGIAIVNDFKSVEG-DRAMGLQSLPVAFGPETAKWICVGAI 304 (369)
Q Consensus 257 ~~~~~l~~~~~~~~~~~~D~e~-D~~aG~~Tl~v~~G~~~a~~~~~~~~ 304 (369)
+..+=+.-.+..+.+|+.|.+. |.+.|.+|.-..+|.+.+....-.++
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~ 118 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQ 118 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHH
Confidence 3333344455677889998776 57899999999999998876554443
No 5
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.43 E-value=68 Score=27.82 Aligned_cols=33 Identities=18% Similarity=-0.022 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccChH----------HhHHCCCccccEEeChh
Q 017603 262 IAGLGIAIVNDFKSVE----------GDRAMGLQSLPVAFGPE 294 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e----------~D~~aG~~Tl~v~~G~~ 294 (369)
-+..++.+.+|+.|+. +|.+.|++|+|+.+..+
T Consensus 229 ~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~ 271 (348)
T d1fpsa_ 229 EMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQ 271 (348)
T ss_dssp HHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHH
T ss_pred ccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHH
Confidence 3556678899988775 47778999999998653
No 6
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=9.18 E-value=1.8e+02 Score=24.15 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccChHHh-HHCCCccccEEeChhhHHHHHHHH
Q 017603 261 SIAGLGIAIVNDFKSVEGD-RAMGLQSLPVAFGPETAKWICVGA 303 (369)
Q Consensus 261 ~l~~~~~~~~~~~~D~e~D-~~aG~~Tl~v~~G~~~a~~~~~~~ 303 (369)
=+.-.+..+.+|+.|.++| .+.|++|.-.++|.+.+....-.+
T Consensus 71 EllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l 114 (290)
T d1rtra_ 71 EMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDAL 114 (290)
T ss_dssp HHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcch
Confidence 3444556788899887765 588999999999998876554433
No 7
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.99 E-value=2e+02 Score=23.71 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHHHHH
Q 017603 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA 303 (369)
Q Consensus 256 l~~~~~l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~~~~ 303 (369)
++..+=+.-.+..+.+|+.| ++|.+.|.+|.=..+|.+.+....-.+
T Consensus 44 ~a~aiEllH~asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l 90 (291)
T d2q80a1 44 IIEVTEMLHNASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYV 90 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccc-CcccccCCCccccccchhhhhhHHHHH
Confidence 33333344445566677765 445678999998899988776555443
No 8
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.84 E-value=3.5e+02 Score=22.70 Aligned_cols=38 Identities=8% Similarity=-0.115 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhccChHHhHHCCCccccEEeChhhHHHHH
Q 017603 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300 (369)
Q Consensus 262 l~~~~~~~~~~~~D~e~D~~aG~~Tl~v~~G~~~a~~~~ 300 (369)
+.-.+..+.+|+.| ++|.+.|++|+=.++|...+....
T Consensus 89 liH~asLihDDi~D-~~~~RRG~pt~~~~~g~~~ail~g 126 (348)
T d1fpsa_ 89 LFQAFFLVADDIMD-QSLTRRGQLCWYKKEGVGLDAIND 126 (348)
T ss_dssp HHHHHHHHHHHHTT-TCCEETTEECTTTSTTTTTTHHHH
T ss_pred HHHHHHHHhCcccc-CCccccccchhhhhccccHHHHHH
Confidence 34445566788877 667788999999999988765443
No 9
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=2.8e+02 Score=19.49 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=20.3
Q ss_pred HHHHhhhhccccccc-ccccCCCCCCCCcc
Q 017603 134 LTGYTQTINDWYDRE-IDAINEPYRPIPSG 162 (369)
Q Consensus 134 ~~~a~~~iNd~~D~~-~D~~~~~~RPl~sG 162 (369)
+.-++-.+|+++|.+ +|..++.+.--|||
T Consensus 10 ~~~~a~~l~~~~dieI~E~HH~~K~DaPSG 39 (110)
T d1diha2 10 LEKAAKVMGDYTDIEIIEAHHRHKVDAPSG 39 (110)
T ss_dssp HHHHHHHHTTTSEEEEEEEECTTCCSSSCH
T ss_pred HHHHHHhcccccChhhHHHHHhcCCCCCch
Confidence 344566788889988 56666666666777
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=4.3e+02 Score=20.53 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=9.1
Q ss_pred HHHHHHHHhhhhcccccc
Q 017603 130 SGPCLTGYTQTINDWYDR 147 (369)
Q Consensus 130 a~~l~~~a~~~iNd~~D~ 147 (369)
.|.....+...++++.|.
T Consensus 121 ~Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 121 IGLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccc
Confidence 344445555556555443
Done!