Query 017605
Match_columns 369
No_of_seqs 117 out of 152
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 2E-125 4E-130 946.8 38.2 357 1-369 11-394 (394)
2 KOG2819 Uncharacterized conser 100.0 2E-117 4E-122 852.9 25.3 355 1-368 23-404 (413)
3 PRK11251 DNA-binding transcrip 54.1 23 0.00051 30.2 4.5 22 198-219 34-55 (109)
4 PF04355 SmpA_OmlA: SmpA / Oml 52.0 6.3 0.00014 30.1 0.7 21 199-219 11-31 (71)
5 COG4454 Uncharacterized copper 48.1 12 0.00026 34.0 2.0 20 265-284 133-152 (158)
6 PF14105 DUF4278: Domain of un 44.0 35 0.00076 25.3 3.6 15 104-118 23-37 (57)
7 PF11399 DUF3192: Protein of u 35.5 27 0.00058 29.6 2.0 27 199-225 30-56 (102)
8 PF14504 CAP_assoc_N: CAP-asso 32.5 28 0.00061 30.7 1.8 20 202-221 1-20 (141)
9 PF08006 DUF1700: Protein of u 32.4 18 0.00039 32.7 0.6 30 203-232 40-69 (181)
10 PF15530 Toxin_50: Putative to 29.7 57 0.0012 29.7 3.2 36 86-121 89-137 (168)
11 PF00609 DAGK_acc: Diacylglyce 28.8 21 0.00045 31.8 0.3 18 246-263 2-19 (161)
12 KOG2667 COPII vesicle protein 27.1 62 0.0013 33.4 3.4 21 80-100 235-257 (379)
13 KOG3384 Selenoprotein [General 25.6 90 0.0019 28.0 3.6 36 4-42 91-127 (154)
14 PF09697 Porph_ging: Protein o 23.7 26 0.00056 27.6 -0.0 15 340-354 56-70 (70)
15 PF02728 Cu_amine_oxidN3: Copp 23.0 97 0.0021 25.4 3.3 29 248-276 68-100 (101)
16 PRK10301 hypothetical protein; 22.1 2.6E+02 0.0057 24.1 5.9 40 26-66 32-72 (124)
17 PRK11548 outer membrane biogen 22.0 56 0.0012 27.6 1.7 21 198-218 44-64 (113)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=2e-125 Score=946.80 Aligned_cols=357 Identities=47% Similarity=0.862 Sum_probs=328.5
Q ss_pred CCHHHHHHHHhcCCcccceEEEEecCCCCCCcceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEccccccCCCCc
Q 017605 1 MPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTL 80 (369)
Q Consensus 1 M~l~~vl~~Lk~~~~~~~~v~v~Ys~~~Pl~~~ivi~l~~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~ 80 (369)
|||||||++||+++++||+|||+||+++|+..||||+||++||||+|||++||||||||+||++++|+|++++|++|++.
T Consensus 11 ~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~~~~~~~p~~~ 90 (394)
T PF03676_consen 11 MSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYKGSVFSSPEIG 90 (394)
T ss_pred CcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeCcccccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeehhccCCCCCCcccCCCCEEEEeecceEEEeeCCccccccccccCCCcccccCCCCCcceeEEEEeeCCCCcccc
Q 017605 81 ATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVG 160 (369)
Q Consensus 81 ~t~~~Iy~~FGPTyPG~y~~~~~~y~LsYpGlaF~F~i~~~~~~~~~~~~~~l~l~~~~~~~p~~~~m~I~~~~~d~~v~ 160 (369)
|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ +++|+++++|+++||+||
T Consensus 91 pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaIf--------- 159 (394)
T PF03676_consen 91 PTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAIF--------- 159 (394)
T ss_pred cchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEEE---------
Confidence 999999999999999999999999999999999999999988888877753 889999999999999999
Q ss_pred cCCcccccCCCCCCC----CCeeEEEEEEEcCC------cEEEEecc--------------eEEEcCCCHHHHHHhcCCC
Q 017605 161 VGSLFDKAIAPSLPV----GSLYIEEVHAKLGE------ELHFTVGS--------------QHIPFGASPQDVWTELGRP 216 (369)
Q Consensus 161 ~G~s~~e~~~p~~~~----~~~~~e~v~v~~~~------~l~f~~~~--------------~~I~fG~T~QDVl~eLG~P 216 (369)
+|++|++++.|++|. +++|+++|+|...+ .|.|.... ++|+||+|||||++|||||
T Consensus 160 ~G~s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P 239 (394)
T PF03676_consen 160 SGSSWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPP 239 (394)
T ss_pred cCCchhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCc
Confidence 999999999997764 89999999884432 44444332 7999999999999999999
Q ss_pred CccccccCCceeeccCCCCCCCCCCcCcceeeecccceeEEEeCCcceEEEEEeeeCCCCccCcCceeeeeeEEeccCCC
Q 017605 217 CGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFA 296 (369)
Q Consensus 217 ~~if~K~ddrM~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN~PG~~~Fn~Y~RC~w~I~~~~~~ 296 (369)
++||||+||||+||++++++...+..+|||||||+||||||||++||+|||||||||+||||+||+|+||||+|....++
T Consensus 240 ~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC~f~I~~~~~~ 319 (394)
T PF03676_consen 240 DRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRCNFEIELSNDS 319 (394)
T ss_pred cceeecccccccccccccccCCccCCCCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeeeeeEEEecCcc
Confidence 99999999999999998888888889999999999999999999999999999999999999999999999999997643
Q ss_pred CCcccccccccccCCCCChhHhHhhhCCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEEcCCceEEEEEeeC
Q 017605 297 GTSAEVHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 369 (369)
Q Consensus 297 ~~~~~~~~~~~~it~~~~~~~i~~~l~~~~-~pvvlnR~~~~--npfGsT~lyG~~~iIfEV~~n~~IasVtlf~~ 369 (369)
... +.......|+++++|++|++.|+... |||||+|++++ ||||+|+||||+|||||||+||+|||||||+.
T Consensus 320 ~~~-~~~~~~~~i~~~~kwd~i~~~L~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasVTly~~ 394 (394)
T PF03676_consen 320 NET-DSPTNSPMITPYTKWDDIQEILGKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASVTLYQA 394 (394)
T ss_pred ccc-ccccccceeeccCCHhHhHHhhcccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEEEEecC
Confidence 321 22223335999999999999997655 99999999886 99999999999999999999999999999974
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-117 Score=852.89 Aligned_cols=355 Identities=46% Similarity=0.790 Sum_probs=323.7
Q ss_pred CCHHHHHHHHhcCCcccceEEEEecCCCCCCcceEEEcCCCCeEEEecCCCCeEEEEEEeeCCcceEEEccccccCCCCc
Q 017605 1 MPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTL 80 (369)
Q Consensus 1 M~l~~vl~~Lk~~~~~~~~v~v~Ys~~~Pl~~~ivi~l~~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~ 80 (369)
|||+||+++||+|++++++|||+||+++||..||||+||++||||+|||.+||||+|||.|+++++|+|+|..|++|++.
T Consensus 23 Mpi~qaiAiiqqh~riik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIEV~dl~~vklrY~gv~fnsp~~l 102 (413)
T KOG2819|consen 23 MPIAQAIAIIQQHPRIIKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQRLKLIEVFDLKKVKLRYCGVHFNSPAIL 102 (413)
T ss_pred ChHHHHHHHHHhCccceeeEEEEEecCCCcceeEEEecCCCceEEEechhhhceeEEEEecceEEEEEEeeeEecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeehhccCCCCCCcccCCCCEEEEeecceEEEeeCCcccccccccc--CCCcccccCCCCCcceeEEEEeeCCCCcc
Q 017605 81 ATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDR--EAELPLEFPDGTTPVTCRVSIYDGSADKK 158 (369)
Q Consensus 81 ~t~~~Iy~~FGPTyPG~y~~~~~~y~LsYpGlaF~F~i~~~~~~~~~~~--~~~l~l~~~~~~~p~~~~m~I~~~~~d~~ 158 (369)
||+++|+++|||||||.||+++++|+|+||||||+||.+....+.+..+ .+.+||+||+|++|+++||.||
T Consensus 103 pTieqi~~sFGaThPGvYd~~~~iy~l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~~~~g~tPv~~kmsiY------- 175 (413)
T KOG2819|consen 103 PTIEQIDQSFGATHPGVYDSAHQIYVLSWPGLSFCFPGGENSNPKVHPGFAHGLRSLVFPAGATPVVTKMSIY------- 175 (413)
T ss_pred hhHHHHHHhhCCCCCCCcCChhhhceeecCceEEECCCCCCCCcccccCccccceeeEecCCCCceeEEEEEe-------
Confidence 9999999999999999999999999999999999999765544444332 3467999999999999999999
Q ss_pred cccCCcccccCCCCCC----CCCeeEEEEEEEcCC----cEEEE---------------ecceEEEcCCCHHHHHHhcCC
Q 017605 159 VGVGSLFDKAIAPSLP----VGSLYIEEVHAKLGE----ELHFT---------------VGSQHIPFGASPQDVWTELGR 215 (369)
Q Consensus 159 v~~G~s~~e~~~p~~~----~~~~~~e~v~v~~~~----~l~f~---------------~~~~~I~fG~T~QDVl~eLG~ 215 (369)
.|++..|++.|.+| .|++|.++|++.+.+ ||.+. ...++|.||+|||||+++||+
T Consensus 176 --~g~n~~e~~~~~~plscy~gq~~~rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~~v~~r~~~FGdScqDV~t~LGa 253 (413)
T KOG2819|consen 176 --RGSNPSEPESPDLPLSCYVGQLYTRSVEVLREGGNPVGLDLKLDTQCGRILLPERVSVYTRQIYFGDSCQDVQTMLGA 253 (413)
T ss_pred --cCCCccccccCCccchhhhhhhhhcccccccCCCCccceeEeecccCCcccccccceEeeEeeecCCcHhHHHHHhCC
Confidence 89999999999665 467777777766542 33332 356799999999999999999
Q ss_pred CCccccccCCceeeccCCCCCCCCCCcCcceeeecccceeEEEeCCcceEEEEEeeeCCCCccCcCceeeeeeEEeccCC
Q 017605 216 PCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDF 295 (369)
Q Consensus 216 P~~if~K~ddrM~IH~~~~~~~~~~~~~dyFyNYF~lGlDiLfd~~t~~v~K~ILHtN~PG~~~Fn~Y~RC~w~I~~~~~ 295 (369)
|.+||||+||||+||+++.+|+.++.++|||||||++|+|||||+.||+|||||||||+|||++||+|+||||+|.+..+
T Consensus 254 P~kvf~Ks~DkMkIHs~s~~r~~~t~~ndyFfNYFtlGlDiLFD~~t~kvkKFVLHTNyPGH~dFnmY~rCnF~i~l~ad 333 (413)
T KOG2819|consen 254 PTKVFYKSEDKMKIHSPSPKRQLPTKCNDYFFNYFTLGLDILFDAVTHKVKKFVLHTNYPGHCDFNMYHRCNFQIFLNAD 333 (413)
T ss_pred CcccccccccceeecCCCCcccCCCcCcchhhhhhhcchhheeecccceeeEEEEeccCCCcccccceeeeEEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCcccccccccccCCCCChhHhHhhhC-CCCCceEecCCCC-CCCCcceEEeeeCCeEEEEEcCCceEEEEEee
Q 017605 296 AGTSAEVHSYKNKITPNTKWEQVKEILG-DCGRAAIQTQGST-SNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQ 368 (369)
Q Consensus 296 ~~~~~~~~~~~~~it~~~~~~~i~~~l~-~~~~pvvlnR~~~-~npfGsT~lyG~~~iIfEV~~n~~IasVtlf~ 368 (369)
.. . .++...|++++|||+|+++|+ +++|||||.|.++ +||||||+||||+++|||||+|++|+|||+|+
T Consensus 334 ~~---~-ads~~ei~t~skwD~ise~~~~~~~rPvvlhrq~st~nPFGSTfcyG~q~~ifEvm~n~~i~svt~yd 404 (413)
T KOG2819|consen 334 AA---E-ADSQTEIRTYSKWDEISEALGSPPERPVVLHRQSSTSNPFGSTFCYGYQRMIFEVMENGHIASVTIYD 404 (413)
T ss_pred cc---c-cccCceeccccchhHHHHHhcCCCCCCceeeccccccCCCccchhhhhhhhhhhhhccCcccceEeec
Confidence 22 2 244556788999999999997 8899999999765 89999999999999999999999999999996
No 3
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=54.14 E-value=23 Score=30.20 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.1
Q ss_pred eEEEcCCCHHHHHHhcCCCCcc
Q 017605 198 QHIPFGASPQDVWTELGRPCGI 219 (369)
Q Consensus 198 ~~I~fG~T~QDVl~eLG~P~~i 219 (369)
..|..|.|-|+|...||.|...
T Consensus 34 ~qv~~GmTr~qV~~~lGtP~~~ 55 (109)
T PRK11251 34 KDVKKGMTRQQVAQIAGKPSSE 55 (109)
T ss_pred HHcCCCCCHHHHHHHcCCCCcc
Confidence 3678899999999999999754
No 4
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=51.95 E-value=6.3 Score=30.15 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.0
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017605 199 HIPFGASPQDVWTELGRPCGI 219 (369)
Q Consensus 199 ~I~fG~T~QDVl~eLG~P~~i 219 (369)
.|.-|.|-++|.+.||+|...
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 567898899999999999887
No 5
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=48.14 E-value=12 Score=33.98 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred EEEEEeeeCCCCccCcCcee
Q 017605 265 IKKFIMHTNYPGHADFNSYI 284 (369)
Q Consensus 265 v~K~ILHtN~PG~~~Fn~Y~ 284 (369)
--|+-+-+|+||||+++++.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g 152 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVG 152 (158)
T ss_pred CccEEEEecCCCcccCCcEE
Confidence 34677899999999999974
No 6
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=43.99 E-value=35 Score=25.27 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=8.9
Q ss_pred EEEEeecceEEEeeC
Q 017605 104 VYMLFYPGLSFAFPI 118 (369)
Q Consensus 104 ~y~LsYpGlaF~F~i 118 (369)
...+.|+|+++.+..
T Consensus 23 ~v~~~YRG~~y~~~~ 37 (57)
T PF14105_consen 23 EVEGTYRGQDYRFRY 37 (57)
T ss_pred ceeeeECcceecccc
Confidence 356666776664443
No 7
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=35.54 E-value=27 Score=29.62 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.9
Q ss_pred EEEcCCCHHHHHHhcCCCCccccccCC
Q 017605 199 HIPFGASPQDVWTELGRPCGIHQKQVD 225 (369)
Q Consensus 199 ~I~fG~T~QDVl~eLG~P~~if~K~dd 225 (369)
.+.+|.|-++|++.||.|+-.--|..+
T Consensus 30 ~L~lg~s~~~V~~~lG~pdfsEa~~~~ 56 (102)
T PF11399_consen 30 KLSLGMSKDQVIALLGTPDFSEAYRKD 56 (102)
T ss_pred hcCCCCCHHHHHHHhCCCCchhheeeC
Confidence 788999999999999999987655544
No 8
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=32.45 E-value=28 Score=30.73 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.7
Q ss_pred cCCCHHHHHHhcCCCCcccc
Q 017605 202 FGASPQDVWTELGRPCGIHQ 221 (369)
Q Consensus 202 fG~T~QDVl~eLG~P~~if~ 221 (369)
||+|.++|.+.||.|.|+--
T Consensus 1 IG~s~~~v~~~~G~P~R~~~ 20 (141)
T PF14504_consen 1 IGKSKEEVEEKLGEPDRIDP 20 (141)
T ss_pred CCCCHHHHHHHcCCccEeec
Confidence 69999999999999998743
No 9
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=32.42 E-value=18 Score=32.69 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=22.5
Q ss_pred CCCHHHHHHhcCCCCccccccCCceeeccC
Q 017605 203 GASPQDVWTELGRPCGIHQKQVDQMVIHSA 232 (369)
Q Consensus 203 G~T~QDVl~eLG~P~~if~K~ddrM~IH~~ 232 (369)
|.|-||++++||.|..+-++--+...|+..
T Consensus 40 G~sEeeii~~LG~P~~iA~~i~~~~~i~~~ 69 (181)
T PF08006_consen 40 GKSEEEIIAELGSPKEIAREILAEYSIKEE 69 (181)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHhhhhhhh
Confidence 779999999999999887654444445443
No 10
>PF15530 Toxin_50: Putative toxin 50
Probab=29.66 E-value=57 Score=29.68 Aligned_cols=36 Identities=36% Similarity=0.775 Sum_probs=24.4
Q ss_pred ehhccCCCCCCcc-cCCC----------CEEEEeec--ceEEEeeCCcc
Q 017605 86 VYALFGPTFPGVY-DKER----------SVYMLFYP--GLSFAFPIPAQ 121 (369)
Q Consensus 86 Iy~~FGPTyPG~y-~~~~----------~~y~LsYp--GlaF~F~i~~~ 121 (369)
|-=.|||=+||.+ |+++ ...-+||- |+.|+|-+-..
T Consensus 89 iGi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGps 137 (168)
T PF15530_consen 89 IGISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPS 137 (168)
T ss_pred EeeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCc
Confidence 3347999999999 4432 22345553 99999988544
No 11
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=28.75 E-value=21 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.0
Q ss_pred eeeecccceeEEEeCCcc
Q 017605 246 FYNYYTRGLDILFDGQTH 263 (369)
Q Consensus 246 FyNYF~lGlDiLfd~~t~ 263 (369)
|.|||..|+|--+....|
T Consensus 2 ~~NYfsiG~DA~ia~~Fh 19 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFH 19 (161)
T ss_pred eEecccccHhhHHHHHHh
Confidence 889999999998875543
No 12
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=62 Score=33.45 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.0
Q ss_pred cccceeehh--ccCCCCCCcccC
Q 017605 80 LATFVAVYA--LFGPTFPGVYDK 100 (369)
Q Consensus 80 ~~t~~~Iy~--~FGPTyPG~y~~ 100 (369)
...|.|+-+ .||+.|||..+|
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 367888775 999999998665
No 13
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=25.60 E-value=90 Score=28.01 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHHHHhc-CCcccceEEEEecCCCCCCcceEEEcCCCC
Q 017605 4 CEAFASIEQ-QPNIYDVVHVKYFDEEPLKLDIIISFPDHG 42 (369)
Q Consensus 4 ~~vl~~Lk~-~~~~~~~v~v~Ys~~~Pl~~~ivi~l~~~G 42 (369)
-|+-+.+++ .+..||+|+|+|=-. ..|++.-|..+|
T Consensus 91 PqiqaFi~sd~~~kFp~vkvkyVrg---~~P~l~llDadg 127 (154)
T KOG3384|consen 91 PQIQAFIESDEPEKFPGVKVKYVRG---SDPVLKLLDADG 127 (154)
T ss_pred HHHHHHHhcCchhhCCCceEEEecC---CCCeeEeecCCC
Confidence 478889999 889999999999775 346666666654
No 14
>PF09697 Porph_ging: Protein of unknown function (Porph_ging); InterPro: IPR019115 This family of proteins of unknown function is found in species belonging to the bacteroidetes.
Probab=23.74 E-value=26 Score=27.62 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=14.1
Q ss_pred CcceEEeeeCCeEEE
Q 017605 340 FGSTFVYGYQNIAFE 354 (369)
Q Consensus 340 fGsT~lyG~~~iIfE 354 (369)
+|+..+.|.||+|+|
T Consensus 56 ~GP~~f~GLPGLILE 70 (70)
T PF09697_consen 56 FGPWKFGGLPGLILE 70 (70)
T ss_pred CCChhhCCCCeEEeC
Confidence 699999999999998
No 15
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=23.01 E-value=97 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=23.8
Q ss_pred eecccc---eeEEEeCCcceEEEEEeee-CCCC
Q 017605 248 NYYTRG---LDILFDGQTHKIKKFIMHT-NYPG 276 (369)
Q Consensus 248 NYF~lG---lDiLfd~~t~~v~K~ILHt-N~PG 276 (369)
|||-|= |=+++|..+..|.|+..+. .+||
T Consensus 68 n~YahPi~gl~~~vD~~~~~vi~i~d~~v~~p~ 100 (101)
T PF02728_consen 68 NFYAHPIEGLEPLVDLDSMEVIRIEDRGVFYPG 100 (101)
T ss_dssp -GGGSEEECEEEEEETTTTEEEEEEEEEEEETT
T ss_pred cccccccCceEEEEECCCCEEEEEEeCCceeeC
Confidence 777764 5589999999999999999 7776
No 16
>PRK10301 hypothetical protein; Provisional
Probab=22.14 E-value=2.6e+02 Score=24.05 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=28.5
Q ss_pred CCCCCCcceEEEcCCCCeEEEecCCCC-eEEEEEEeeCCcce
Q 017605 26 DEEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIKRLQ 66 (369)
Q Consensus 26 ~~~Pl~~~ivi~l~~~GirL~Fd~~~Q-RL~lIEv~d~~~~~ 66 (369)
...|.....+=.-|+. |.|.|+.+-| ++.-|+|.|-+.-.
T Consensus 32 ~s~Pa~ga~v~~~P~~-V~L~F~e~v~~~~s~i~v~~~~g~~ 72 (124)
T PRK10301 32 HQYPAANAQVTAAPQA-LTLNFSEGIEPGFSGATITGPKQEN 72 (124)
T ss_pred ccCCCCCCccccCCCE-EEEEcCCCccccccEEEEEcCCCCE
Confidence 6677777776666666 9999998554 56678887776433
No 17
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=22.05 E-value=56 Score=27.62 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=18.0
Q ss_pred eEEEcCCCHHHHHHhcCCCCc
Q 017605 198 QHIPFGASPQDVWTELGRPCG 218 (369)
Q Consensus 198 ~~I~fG~T~QDVl~eLG~P~~ 218 (369)
..|..|.|-|+|...||.|.-
T Consensus 44 ~~l~~GmTk~qV~~lLGtP~~ 64 (113)
T PRK11548 44 AKIHVGMTQQQVAYTLGTPMM 64 (113)
T ss_pred HHhcCCCCHHHHHHHcCCCcc
Confidence 377889999999999999943
Done!