Query 017605
Match_columns 369
No_of_seqs 117 out of 152
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh9_A Small protein A, BAME p 72.9 3.2 0.00011 32.3 3.8 21 199-219 12-32 (88)
2 2km7_A Small protein A; BAME, 64.5 6.4 0.00022 31.6 4.0 22 198-219 25-46 (102)
3 4dm5_A Osmotically inducible l 20.7 38 0.0013 27.6 1.5 22 200-221 24-45 (103)
4 2pxg_A Outer membrane protein; 19.3 33 0.0011 28.2 1.0 21 199-219 25-45 (118)
5 4h0a_A Uncharacterized protein 15.3 50 0.0017 31.6 1.2 20 202-221 45-64 (323)
6 1f46_A Cell division protein Z 12.6 62 0.0021 27.3 0.9 26 93-120 61-86 (140)
7 2c9r_A COPC, copper resistance 12.4 1.6E+02 0.0056 23.1 3.4 35 27-63 7-42 (102)
8 3poj_A Mannan-binding lectin s 11.9 1.2E+02 0.0042 23.4 2.5 25 269-295 16-40 (115)
9 4ifa_A Extracellular protein c 11.1 87 0.003 30.3 1.6 23 199-221 52-74 (339)
10 2k54_A Protein ATU0742; protei 10.9 1.5E+02 0.0053 22.6 2.8 16 352-368 98-113 (123)
No 1
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=72.95 E-value=3.2 Score=32.27 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.9
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017605 199 HIPFGASPQDVWTELGRPCGI 219 (369)
Q Consensus 199 ~I~fG~T~QDVl~eLG~P~~i 219 (369)
.|..|.|-++|...||+|..+
T Consensus 12 ~i~~GmTk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 12 KIRVGMTQQQVAYALGTPLMS 32 (88)
T ss_dssp TCCTTCBHHHHHHHHCSCSEE
T ss_pred hccCCCCHHHHHHHcCCCccc
Confidence 678899999999999999875
No 2
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=64.54 E-value=6.4 Score=31.58 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.3
Q ss_pred eEEEcCCCHHHHHHhcCCCCcc
Q 017605 198 QHIPFGASPQDVWTELGRPCGI 219 (369)
Q Consensus 198 ~~I~fG~T~QDVl~eLG~P~~i 219 (369)
..|..|.|-++|...||+|..+
T Consensus 25 ~~i~~GmTk~qV~~lLG~P~~~ 46 (102)
T 2km7_A 25 SKIRVGMTQQQVAYALGTPLMS 46 (102)
T ss_dssp TTCCTTCBHHHHHHHHCCCCCC
T ss_pred HhccCCCCHHHHHHhcCCCccc
Confidence 3678899999999999999875
No 3
>4dm5_A Osmotically inducible lipoprotein OSME; unknown function; HET: MSE; 1.50A {Pseudomonas aeruginosa PAO1}
Probab=20.69 E-value=38 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEcCCCHHHHHHhcCCCCcccc
Q 017605 200 IPFGASPQDVWTELGRPCGIHQ 221 (369)
Q Consensus 200 I~fG~T~QDVl~eLG~P~~if~ 221 (369)
|.=|.|-|+|+..+|+|..+..
T Consensus 24 V~~GMTk~qV~rigG~PsS~~~ 45 (103)
T 4dm5_A 24 VEKGMSQQEVLRIGGTPSGTQK 45 (103)
T ss_dssp CCTTCBHHHHHHHHCSCSEEEE
T ss_pred hcCCCCHHHHHHhcCCCcceEE
Confidence 4568999999999999988754
No 4
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=19.33 E-value=33 Score=28.17 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=18.5
Q ss_pred EEEcCCCHHHHHHhcCCCCcc
Q 017605 199 HIPFGASPQDVWTELGRPCGI 219 (369)
Q Consensus 199 ~I~fG~T~QDVl~eLG~P~~i 219 (369)
.|..|.|-++|...||.|...
T Consensus 25 ql~~GMTk~QV~~lLGtP~~~ 45 (118)
T 2pxg_A 25 QLQVGQSKQQVSALLGTPSIP 45 (118)
T ss_dssp TTCCCSCHHHHHHHHTSCCCC
T ss_pred HccCCCCHHHHHHHcCCCccc
Confidence 567799999999999999875
No 5
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=15.28 E-value=50 Score=31.61 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=18.3
Q ss_pred cCCCHHHHHHhcCCCCcccc
Q 017605 202 FGASPQDVWTELGRPCGIHQ 221 (369)
Q Consensus 202 fG~T~QDVl~eLG~P~~if~ 221 (369)
||++.++|...||.|.|+.-
T Consensus 45 IG~~~~~v~~~~G~P~R~~~ 64 (323)
T 4h0a_A 45 VGKDIKVLTSKFGQADRVYP 64 (323)
T ss_dssp TTSBTHHHHHHHCSCSEEEE
T ss_pred hCCCHHHHHHHhCCcccccc
Confidence 69999999999999999853
No 6
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=12.55 E-value=62 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.7
Q ss_pred CCCCcccCCCCEEEEeecceEEEeeCCc
Q 017605 93 TFPGVYDKERSVYMLFYPGLSFAFPIPA 120 (369)
Q Consensus 93 TyPG~y~~~~~~y~LsYpGlaF~F~i~~ 120 (369)
+-||.|+++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 457777764 33458999999999985
No 7
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=12.40 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=25.3
Q ss_pred CCCCCcceEEEcCCCCeEEEecCCCC-eEEEEEEeeCC
Q 017605 27 EEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIK 63 (369)
Q Consensus 27 ~~Pl~~~ivi~l~~~GirL~Fd~~~Q-RL~lIEv~d~~ 63 (369)
++|...-.+ .-|.. |+|.|+..-+ ++.-|.|.|.+
T Consensus 7 s~Pa~ga~v-~aP~~-v~L~Fse~v~~~~s~v~v~~~~ 42 (102)
T 2c9r_A 7 STPAEGSEG-AAPAK-IELHFSENLVTQFSGAKLVMTA 42 (102)
T ss_dssp EESCTTCEE-SCCSC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCccCccEEEEECCC
Confidence 457777777 76665 9999998543 66777777664
No 8
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=11.87 E-value=1.2e+02 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.1
Q ss_pred EeeeCCCCccCcCceeeeeeEEeccCC
Q 017605 269 IMHTNYPGHADFNSYIKCNFIILGSDF 295 (369)
Q Consensus 269 ILHtN~PG~~~Fn~Y~RC~w~I~~~~~ 295 (369)
|.--|+|+.|.=| ..|.|.|.....
T Consensus 16 i~SP~yP~~Yp~~--~~C~w~I~~~~g 40 (115)
T 3poj_A 16 ITSPDYPNPYPKS--SECSYTIDLEEG 40 (115)
T ss_dssp EECTTTTSCCCTT--CEEEEEEECCTT
T ss_pred EcCCCCCcCCcCC--CeEEEEEEcCCC
Confidence 3344889877643 579999999764
No 9
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=11.08 E-value=87 Score=30.26 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEcCCCHHHHHHhcCCCCcccc
Q 017605 199 HIPFGASPQDVWTELGRPCGIHQ 221 (369)
Q Consensus 199 ~I~fG~T~QDVl~eLG~P~~if~ 221 (369)
-.-||++.++|...||.|.|+..
T Consensus 52 ~~~IG~~~~~v~~~~G~P~R~~~ 74 (339)
T 4ifa_A 52 LNMIGGDSENLLAKWGEPSRIEP 74 (339)
T ss_dssp HHHTTSBHHHHHHHHCSCSEEEE
T ss_pred HHHhCCCHHHHHHHhCCCccccc
Confidence 34579999999999999999854
No 10
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=10.91 E-value=1.5e+02 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=13.8
Q ss_pred EEEEEcCCceEEEEEee
Q 017605 352 AFEVMKNGYISTVTMFQ 368 (369)
Q Consensus 352 IfEV~~n~~IasVtlf~ 368 (369)
||+| +||.|+.++.|-
T Consensus 98 vf~v-~dGkI~~~~~~~ 113 (123)
T 2k54_A 98 IYEV-ENGRIAKAWFKI 113 (123)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred EEEE-ECCEEEEEEEEc
Confidence 7887 999999999873
Done!