BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017607
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 188/305 (61%), Positives = 235/305 (77%), Gaps = 16/305 (5%)
Query: 47 CHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESL 106
C STV+ GWFSE +P WPGEAHSLKV+++LF+GKS+YQ+V+VF+S
Sbjct: 39 CFSTVIPGWFSEX--------------SPXWPGEAHSLKVEKVLFQGKSDYQDVIVFQSA 84
Query: 107 AYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSV 166
YGKVLVLDG++QLTE+DECAYQE I HLPLCSIP+PK RE++RH S+
Sbjct: 85 TYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASI 144
Query: 167 ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 226
E ID CEIDK V+DVSK++FP++A+G+EDPRV L IGD V FL+ G YDA+IVDSSD
Sbjct: 145 EQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD 204
Query: 227 PVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAW 286
P+GPA+EL EKPFF ++A+ALRPGGV+C AES+WLH +IED++S CRE FKGSV+YAW
Sbjct: 205 PIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHXDIIEDIVSNCREIFKGSVNYAW 264
Query: 287 ASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALP 346
SVPTYPSG+IGF +CSTEGP VDF +P+NPI+ E + K L+FYN+EIHSAAF LP
Sbjct: 265 TSVPTYPSGVIGFXLCSTEGPDVDFKHPLNPID--ESSSKSNGPLKFYNAEIHSAAFCLP 322
Query: 347 AFLKR 351
+F K+
Sbjct: 323 SFAKK 327
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/278 (49%), Positives = 177/278 (63%), Gaps = 9/278 (3%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 50 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 109
Query: 136 PLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED 195
P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+ED
Sbjct: 110 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 169
Query: 196 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 170 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228
Query: 256 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 315
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 229 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TDTGLTKPN 285
Query: 316 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 353
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 286 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 318
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/278 (49%), Positives = 177/278 (63%), Gaps = 9/278 (3%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 11 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 70
Query: 136 PLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED 195
P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+ED
Sbjct: 71 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 130
Query: 196 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 131 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 189
Query: 256 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 315
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 190 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCS--KTDTGLTKPN 246
Query: 316 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 353
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 247 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 279
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/278 (49%), Positives = 177/278 (63%), Gaps = 9/278 (3%)
Query: 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHL 135
MWPG+A SLK+K+IL++ KS+YQ VLVFES YGKVLVLDG++QLTEKDE AY EM+ H+
Sbjct: 12 MWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHV 71
Query: 136 PLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED 195
P+ PK RE+ ++ SVE IDICEID+ VI+VSK YF ++ G+ED
Sbjct: 72 PMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED 131
Query: 196 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255
RV + I DA +FL V YD IIVDSSDP+GPA+ L + F++ I AL+P G
Sbjct: 132 KRVNVFIEDASKFLENVTNT-YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 190
Query: 256 MAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPI 315
ES+W+H I++MI ++ FK V YA S+PTYP G IG L CS P
Sbjct: 191 QCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSK--TDTGLTKPN 247
Query: 316 NPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREV 353
+E E AD L++YN E HSAAF LPAFL +E+
Sbjct: 248 KKLESKEFAD-----LKYYNYENHSAAFKLPAFLLKEI 280
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 195/306 (63%), Gaps = 20/306 (6%)
Query: 49 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAY 108
+ + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S Y
Sbjct: 16 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVEL 168
G VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+ RE+ +H SVE
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 169 IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 228
+ CEID+ VI VSKK+ P +A+G+ ++ LH+GD EF++Q + +D II DSSDP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPM 180
Query: 229 GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 288
GPA+ L ++ ++ + AL+ GVLC E WLH LI++M C+ F V YA+ +
Sbjct: 181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCT 239
Query: 289 VPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 348
+PTYPSG IGF++CS + P +F P+ P+ + + A + +L++YNS++H AAF LP F
Sbjct: 240 IPTYPSGQIGFMLCS-KNPSTNFQEPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEF 295
Query: 349 LKREVS 354
++ ++
Sbjct: 296 ARKALN 301
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/306 (42%), Positives = 195/306 (63%), Gaps = 20/306 (6%)
Query: 49 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAY 108
+ + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S Y
Sbjct: 16 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTY 61
Query: 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVEL 168
G VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+ RE+ +H SVE
Sbjct: 62 GNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVES 121
Query: 169 IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 228
+ CEID+ VI VSKK+ P +A+G+ ++ LH+GD EF++Q + +D II DSSDP+
Sbjct: 122 VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPM 180
Query: 229 GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 288
GPA+ L ++ ++ + AL+ GVLC E WLH LI++M C+ F V YA+ +
Sbjct: 181 GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCT 239
Query: 289 VPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 348
+PTYPSG IGF++CS + P +F P+ P+ + + A + +L++YNS++H AAF LP F
Sbjct: 240 IPTYPSGQIGFMLCS-KNPSTNFQEPVQPLTQQQVA---QMQLKYYNSDVHRAAFVLPEF 295
Query: 349 LKREVS 354
++ ++
Sbjct: 296 ARKALN 301
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 178/275 (64%), Gaps = 6/275 (2%)
Query: 77 WPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLP 136
WPG+A SL+VK++LF KS+YQ+VLVFES YG VLVLDGIVQ TE+DE +YQEM+AHLP
Sbjct: 43 WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102
Query: 137 LCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDP 196
+ + P PK RE+ +H+SVE + +CEID+MVIDV+KK+ P ++ GF P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162
Query: 197 RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256
++ L GD EFL+ + ++D II DSSDPVGPA+ L + +++ + AL+ G+L +
Sbjct: 163 KLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221
Query: 257 AESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPIN 316
ES+WLH LI +++ R+ F +V YA + V TYPSG +G+LIC+ +
Sbjct: 222 GESVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYPSGSMGYLICAKNANR----DVTT 276
Query: 317 PIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKR 351
P L LRFYNSE+H AAF LP F+K
Sbjct: 277 PARTLTAEQIKALNLRFYNSEVHKAAFVLPQFVKN 311
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 22/303 (7%)
Query: 51 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLA--- 107
+ GWF E N WPG+A SL+V+++L+ +++Q + +FES
Sbjct: 15 ISGGWFRE--------------ENDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGP 60
Query: 108 YGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE 167
+G V LDG +Q+T+ DE Y E++ H LCS P P+ RE+ RH +VE
Sbjct: 61 WGTVXALDGCIQVTDYDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVE 120
Query: 168 LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP 227
D+ +ID V + SK++FP+++ DPR + +GD + F+RQ P YD +I+D++DP
Sbjct: 121 HCDLVDIDGEVXEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDP 180
Query: 228 VGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWA 287
GPA +L + F+ + + L+P G+ CN ES+WL LIE RET SV YA
Sbjct: 181 AGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKXSRFIRETGFASVQYALX 240
Query: 288 SVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPA 347
VPTYP G IG L+CS + VD P+ P+E A ++L++Y+SE H A+FALP
Sbjct: 241 HVPTYPCGSIGTLVCSKKA-GVDVTKPLRPVEDXPFA----KDLKYYDSEXHKASFALPR 295
Query: 348 FLK 350
F +
Sbjct: 296 FAR 298
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 148/267 (55%), Gaps = 12/267 (4%)
Query: 83 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPS 142
++KV + L ++E+Q + + E+ +G +L LDG+V +EKDE Y EM+AH+PL + P+
Sbjct: 16 TMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTHPN 75
Query: 143 PKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI 202
P+ REI +H SV+ + +ID VI+ SKK+ P +A +DPRV + +
Sbjct: 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV 135
Query: 203 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 262
D + + +YD I+VDS++PVGPA L K F+ IAKAL+ G+ ++ W
Sbjct: 136 DDGFMHIAK-SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF 194
Query: 263 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLE 322
LI ++ +E F + Y A++PTYPSG+ F I S + +P+ +E
Sbjct: 195 TPELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKK------YDPL----AVE 243
Query: 323 GADKHKRELRFYNSEIHSAAFALPAFL 349
+ E ++Y +IH AAF LP F+
Sbjct: 244 DSRFFDIETKYYTKDIHKAAFVLPKFV 270
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 147/276 (53%), Gaps = 14/276 (5%)
Query: 84 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 143
+K+ +++ G+S+ Q + +FE+ G V LDGI TEKDE Y EM+AH+P+ P+P
Sbjct: 32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNP 91
Query: 144 KTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG 203
K RE+ +HDSVE +CE+D +VI+ ++KY + + GF+DPR + I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA 151
Query: 204 DAVEFLRQVPRGKYDAIIVDSSDPV-GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 262
+ E++R+ + ++D II+DS+DP G L + F+ AL+ GV E +
Sbjct: 152 NGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFY 210
Query: 263 HTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKL- 321
+ + F + Y + TYPSG+ + S I+PI+
Sbjct: 211 DIGWFKLAYRRISKVFPITRVYL-GFMTTYPSGMWSYTFAS---------KGIDPIKDFD 260
Query: 322 -EGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 356
E K +EL++YN E+H A+FALP F+K+E+ ++
Sbjct: 261 PEKVRKFNKELKYYNEEVHVASFALPNFVKKELGLM 296
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 11/270 (4%)
Query: 84 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSP 143
V +L+ K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE Y EM+ H+PL +
Sbjct: 25 FAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHA 84
Query: 144 KTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHI 202
K RE++RH +VE I + EID V+ ++Y P G ++DPR +L I
Sbjct: 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144
Query: 203 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWL 262
D V F+ Q + +D II D +DP+GP + L F++ + L PGG+ +L
Sbjct: 145 DDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203
Query: 263 HTHLIEDMISICRET--FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEK 320
E+ I R+ + V + A++PTY GI+ F + I
Sbjct: 204 QQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARF 260
Query: 321 LEGADKHKRELRFYNSEIHSAAFALPAFLK 350
L K R+YN IH+AAFALP +L+
Sbjct: 261 LASGLK----CRYYNPAIHTAAFALPQYLQ 286
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 14/237 (5%)
Query: 70 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129
MYF + P E +++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y
Sbjct: 5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYH 64
Query: 130 EMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189
E + H + + P PK RE+ +H +VE + +ID +++V+K++ PE
Sbjct: 65 ETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW 124
Query: 190 AVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAK 245
G F+DPR L I DA +L + +YD +I+D +DPVG PA+ L F+ +
Sbjct: 125 HQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA 183
Query: 246 ALRPGGVLCNMAESMWLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 301
L PGGV+ A + L H + ++ RE F+ V +Y + I GF +
Sbjct: 184 HLNPGGVMGMQAGMILLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 14/237 (5%)
Query: 70 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129
MYF + P E +++ ++ GK+ +Q+ +FES +GKVL+LD VQ TE+DE Y
Sbjct: 5 MYFFEHVTPYETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYH 64
Query: 130 EMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189
E + H + + P PK RE+ +H +VE + +ID +++V+K++ PE
Sbjct: 65 ETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEW 124
Query: 190 AVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG---PAQELVEKPFFDTIAK 245
G F+DPR L I DA +L + +YD +I+D +DPVG PA+ L F+ +
Sbjct: 125 HQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA 183
Query: 246 ALRPGGVLCNMAESMWLHTHLIEDMI-SICRETFKGSVHYAWASVPTYPSGIIGFLI 301
L PGGV+ + L H + ++ RE F+ V +Y + I GF +
Sbjct: 184 HLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR--------YVRSYKNHIPGFFL 232
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 144/289 (49%), Gaps = 30/289 (10%)
Query: 79 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 138
G + K+K+ +++ S+YQ++ V+E+ +G++L LDG VQL E +Y E + H +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 139 SIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFP------ELAVG 192
+ P PK RE+ +HD E+I + EID+ VI VSK E +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVI-MVEIDEDVIMVSKDLIKIDNGLLEAMLN 130
Query: 193 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 252
+ + +L IGD EF++ RG +D II DS+DPVGPA+ L + F+ + AL G+
Sbjct: 131 GKHEKAKLTIGDGFEFIKN-NRG-FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 253 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGP 307
A S++L T +++IS +E K + V Y +IG+ + +G
Sbjct: 189 YVTQAGSVYLFT---DELISAYKEMKK-----VFDRVYYYSFPVIGYASPWAFLVGVKG- 239
Query: 308 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 356
+DF K++ K +L +Y+ +H F +P +++ + L
Sbjct: 240 DIDFT-------KIDRERAKKLQLEYYDPLMHETLFQMPKYIRETLQRL 281
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 140/282 (49%), Gaps = 29/282 (10%)
Query: 79 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLC 138
G + KVK + + +SEYQ++ V+E+ +GK+L +DG VQL + E +Y E + H +
Sbjct: 13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAML 72
Query: 139 SIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFP------ELAVG 192
+ P+P+ RE+ +H+ VE + + EIDK VI++S KY E +
Sbjct: 73 AHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLS 132
Query: 193 FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 252
+ + +L IGD V+F+ + +D IIVDS+DPVGPA+ L + F+ +AL G+
Sbjct: 133 DKHEKGKLIIGDGVKFIEE--NSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALNDPGI 190
Query: 253 LCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGF-----LICSTEGP 307
A S++L T R+ F +Y++ +IG+ + +G
Sbjct: 191 YVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFP--------VIGYASPWAFLVGVKGS 242
Query: 308 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 349
+DF+ K++ K L +Y+ + H F +P ++
Sbjct: 243 -IDFM-------KVDAEKGKKLGLEYYDPDKHETLFQMPRYI 276
>pdb|2CMG|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMG|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|A Chain A, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|B Chain B, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
pdb|2CMH|C Chain C, Crystal Structure Of Spermidine Synthase From Helicobacter
Pylori
Length = 262
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 116/283 (40%), Gaps = 32/283 (11%)
Query: 70 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129
M+ + P ++ L +SE+ + +F+S +G++ +L+ QL K+ +
Sbjct: 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNR--QLLFKNFLHIE 58
Query: 130 -EMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYFPE 188
E++AH+ C+ K ++ ++D+ ID + D+ ++D +FP
Sbjct: 59 SELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTH--IDFVQADEKILDSFISFFPH 116
Query: 189 LAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR 248
F + + + A + L + KYD I + D + + L+
Sbjct: 117 ----FHEVKNNKNFTHAKQLL-DLDIKKYDLIFCLQEPDIHRI---------DGLKRMLK 162
Query: 249 PGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEG-P 307
GV ++A+ L +++ + F ++ + P G++ S + P
Sbjct: 163 EDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFV---APLRILSNKGYIYASFKTHP 219
Query: 308 HVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 350
D + P IE L +R+YN +IH AAFALP L+
Sbjct: 220 LKDLMTP--KIEALTS-------VRYYNEDIHRAAFALPKNLQ 253
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 77 WP---GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 133
WP G + E+++ S YQ + + S +G +L+L G V L E D AY I
Sbjct: 139 WPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIM 197
Query: 134 HLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICEIDKMVIDVSKKYF 186
+ K EI + +++ + EID+MVID KKY
Sbjct: 198 GSGKEDY-TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYM 248
>pdb|3UAU|A Chain A, Crystal Structure Of The Lipoprotein Jlpa
pdb|3UAU|B Chain B, Crystal Structure Of The Lipoprotein Jlpa
Length = 379
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 74 NPMWPGEAH-SLKVKEI---LFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKD 124
N ++ GE + S+ +KE LFK + Q LVFE G+ +V D L ++D
Sbjct: 106 NEIYKGETNTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQD 160
>pdb|3GJY|A Chain A, Crystal Structure Of A Probable Spermidine Synthase From
Corynebacterium Glutamicum Atcc 13032
Length = 317
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 171 ICEIDKMVIDVSKKYF--PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV 228
+ E+D + +S+++F P PRV++ + DA D II D
Sbjct: 118 VVELDAELARLSREWFDIPRA------PRVKIRVDDARXVAESFTPASRDVIIRDVFAGA 171
Query: 229 GPAQELVEKPFFDTIAKALRPGGV 252
Q FF+ + L PGG+
Sbjct: 172 ITPQNFTTVEFFEHCHRGLAPGGL 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,308,298
Number of Sequences: 62578
Number of extensions: 463436
Number of successful extensions: 866
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 22
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)