Query 017607
Match_columns 369
No_of_seqs 489 out of 3087
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 8.6E-63 1.9E-67 475.2 32.9 304 39-356 2-305 (308)
2 KOG1562 Spermidine synthase [A 100.0 2.6E-62 5.6E-67 454.2 15.5 329 6-355 5-333 (337)
3 PRK00536 speE spermidine synth 100.0 6.4E-60 1.4E-64 443.7 25.7 252 77-356 8-259 (262)
4 PRK00811 spermidine synthase; 100.0 2.5E-56 5.5E-61 427.2 30.0 271 78-354 12-283 (283)
5 COG0421 SpeE Spermidine syntha 100.0 3.8E-56 8.2E-61 422.6 26.0 280 52-354 2-281 (282)
6 PLN02823 spermine synthase 100.0 8.1E-53 1.8E-57 409.8 30.8 273 78-358 39-317 (336)
7 TIGR00417 speE spermidine synt 100.0 9.5E-51 2.1E-55 386.4 28.7 264 76-348 6-270 (270)
8 PF01564 Spermine_synth: Sperm 100.0 1.2E-49 2.6E-54 373.5 26.1 242 54-309 1-242 (246)
9 PRK03612 spermidine synthase; 100.0 3.7E-44 8E-49 369.2 25.1 255 80-350 232-494 (521)
10 PRK01581 speE spermidine synth 100.0 2.9E-43 6.2E-48 341.8 24.9 219 86-309 96-318 (374)
11 COG4262 Predicted spermidine s 100.0 5.1E-42 1.1E-46 325.8 19.9 250 82-348 230-483 (508)
12 PRK04457 spermidine synthase; 99.9 2.5E-23 5.4E-28 197.2 23.2 200 92-305 11-217 (262)
13 COG2521 Predicted archaeal met 99.6 5.2E-15 1.1E-19 134.7 15.9 166 110-279 102-271 (287)
14 PF12847 Methyltransf_18: Meth 99.6 3E-15 6.5E-20 122.6 9.5 108 143-256 2-110 (112)
15 TIGR03533 L3_gln_methyl protei 99.6 1.6E-15 3.6E-20 145.5 8.5 198 50-258 30-252 (284)
16 PRK14966 unknown domain/N5-glu 99.6 5.6E-15 1.2E-19 147.0 10.5 197 50-257 164-381 (423)
17 PRK11805 N5-glutamine S-adenos 99.5 2.9E-14 6.2E-19 138.3 10.8 229 50-302 42-295 (307)
18 PRK01544 bifunctional N5-gluta 99.5 6.6E-15 1.4E-19 151.7 6.6 198 49-257 24-269 (506)
19 PF13659 Methyltransf_26: Meth 99.5 7.1E-14 1.5E-18 115.4 11.3 110 144-257 2-115 (117)
20 TIGR00536 hemK_fam HemK family 99.5 1.7E-14 3.8E-19 138.4 7.1 200 50-258 24-245 (284)
21 TIGR00091 tRNA (guanine-N(7)-) 99.5 6.5E-13 1.4E-17 120.5 14.4 114 142-259 16-134 (194)
22 PF05175 MTS: Methyltransferas 99.5 2.1E-13 4.5E-18 121.1 9.8 107 142-255 31-138 (170)
23 PRK00121 trmB tRNA (guanine-N( 99.5 1.1E-12 2.4E-17 119.7 14.8 127 142-276 40-171 (202)
24 COG4123 Predicted O-methyltran 99.5 3.2E-12 6.9E-17 119.3 17.6 131 141-279 43-188 (248)
25 TIGR02752 MenG_heptapren 2-hep 99.4 1.3E-11 2.7E-16 114.4 17.4 115 129-256 35-150 (231)
26 COG2226 UbiE Methylase involve 99.4 6.8E-12 1.5E-16 116.8 15.3 105 142-256 51-155 (238)
27 COG4122 Predicted O-methyltran 99.4 5.9E-12 1.3E-16 115.7 14.3 105 141-255 58-164 (219)
28 PLN02476 O-methyltransferase 99.4 1.4E-11 2.9E-16 117.4 17.2 105 141-255 117-226 (278)
29 TIGR03704 PrmC_rel_meth putati 99.4 8.7E-12 1.9E-16 117.7 15.1 155 93-257 39-216 (251)
30 PF13847 Methyltransf_31: Meth 99.4 2.6E-12 5.7E-17 111.6 10.5 107 142-257 3-110 (152)
31 TIGR00138 gidB 16S rRNA methyl 99.4 1.4E-11 3E-16 110.7 15.4 101 142-257 42-142 (181)
32 COG2890 HemK Methylase of poly 99.4 7.2E-13 1.6E-17 126.9 7.2 195 52-258 24-239 (280)
33 PRK14121 tRNA (guanine-N(7)-)- 99.4 7.5E-12 1.6E-16 124.0 14.1 116 142-261 122-239 (390)
34 COG4106 Tam Trans-aconitate me 99.4 3.7E-12 8.1E-17 115.1 10.8 112 129-259 20-131 (257)
35 PLN02781 Probable caffeoyl-CoA 99.4 1.9E-11 4.2E-16 114.1 15.8 105 141-255 67-176 (234)
36 PRK15451 tRNA cmo(5)U34 methyl 99.4 6.5E-12 1.4E-16 118.1 12.4 107 141-256 55-163 (247)
37 PRK09328 N5-glutamine S-adenos 99.4 1.9E-12 4.1E-17 122.9 8.5 194 52-257 21-238 (275)
38 PF01596 Methyltransf_3: O-met 99.4 5.5E-12 1.2E-16 115.4 11.1 106 141-256 44-154 (205)
39 PRK00107 gidB 16S rRNA methylt 99.3 2.4E-11 5.2E-16 109.7 14.9 102 141-257 44-145 (187)
40 TIGR02469 CbiT precorrin-6Y C5 99.3 8.7E-12 1.9E-16 103.3 10.9 104 142-257 19-122 (124)
41 PF08241 Methyltransf_11: Meth 99.3 3.8E-12 8.2E-17 100.1 8.3 95 147-255 1-95 (95)
42 PF01209 Ubie_methyltran: ubiE 99.3 3.5E-12 7.5E-17 119.1 9.2 106 141-256 46-152 (233)
43 PRK15001 SAM-dependent 23S rib 99.3 1.2E-11 2.6E-16 122.8 13.3 137 129-279 218-355 (378)
44 TIGR03534 RF_mod_PrmC protein- 99.3 4.7E-12 1E-16 118.3 9.2 151 95-257 44-217 (251)
45 PRK15128 23S rRNA m(5)C1962 me 99.3 2.9E-11 6.2E-16 121.1 15.1 127 142-271 220-353 (396)
46 PRK08287 cobalt-precorrin-6Y C 99.3 5.4E-11 1.2E-15 107.0 15.5 120 141-279 30-150 (187)
47 PRK01683 trans-aconitate 2-met 99.3 2E-11 4.3E-16 115.1 13.2 102 141-258 30-131 (258)
48 PRK11036 putative S-adenosyl-L 99.3 2.6E-11 5.7E-16 114.4 12.8 107 141-257 43-149 (255)
49 PRK09489 rsmC 16S ribosomal RN 99.3 4.7E-11 1E-15 117.5 14.7 121 143-279 197-318 (342)
50 PLN02233 ubiquinone biosynthes 99.3 4E-11 8.7E-16 113.8 12.5 109 141-256 72-181 (261)
51 PLN02244 tocopherol O-methyltr 99.3 3.1E-11 6.8E-16 118.7 12.1 106 141-256 117-222 (340)
52 PRK14103 trans-aconitate 2-met 99.3 2.6E-11 5.7E-16 114.4 11.1 99 141-257 28-126 (255)
53 TIGR00740 methyltransferase, p 99.3 8.4E-11 1.8E-15 109.8 14.4 107 141-256 52-160 (239)
54 COG2230 Cfa Cyclopropane fatty 99.3 2.7E-11 5.9E-16 115.0 10.9 106 141-258 71-177 (283)
55 PF13649 Methyltransf_25: Meth 99.3 1.3E-11 2.9E-16 99.7 7.5 97 146-251 1-101 (101)
56 PRK00377 cbiT cobalt-precorrin 99.3 1.2E-10 2.6E-15 105.9 14.6 122 141-277 39-161 (198)
57 COG2242 CobL Precorrin-6B meth 99.3 1.1E-10 2.3E-15 104.1 13.8 119 141-277 33-151 (187)
58 PF02390 Methyltransf_4: Putat 99.3 4.6E-11 1E-15 108.6 11.3 124 145-276 20-148 (195)
59 PF02353 CMAS: Mycolic acid cy 99.2 2.7E-11 5.9E-16 115.6 10.1 107 140-258 60-167 (273)
60 PRK00517 prmA ribosomal protei 99.2 1.6E-10 3.5E-15 108.9 14.5 161 110-304 88-249 (250)
61 PRK07402 precorrin-6B methylas 99.2 1.7E-10 3.7E-15 104.6 14.1 106 141-259 39-144 (196)
62 PRK14967 putative methyltransf 99.2 2.5E-10 5.4E-15 105.7 15.3 106 142-256 36-158 (223)
63 COG2813 RsmC 16S RNA G1207 met 99.2 1.7E-10 3.7E-15 109.9 14.0 133 129-279 148-281 (300)
64 TIGR00537 hemK_rel_arch HemK-r 99.2 1.5E-10 3.2E-15 103.5 12.9 105 142-257 19-140 (179)
65 PRK13944 protein-L-isoaspartat 99.2 1.2E-10 2.7E-15 106.5 12.6 100 142-256 72-172 (205)
66 PRK04266 fibrillarin; Provisio 99.2 4.9E-10 1.1E-14 104.2 16.7 102 141-255 71-174 (226)
67 PRK11207 tellurite resistance 99.2 1.2E-10 2.7E-15 105.8 12.4 103 142-255 30-132 (197)
68 TIGR00080 pimt protein-L-isoas 99.2 1.2E-10 2.6E-15 107.2 12.4 110 129-257 67-177 (215)
69 TIGR02072 BioC biotin biosynth 99.2 1.2E-10 2.6E-15 107.4 11.9 103 141-257 33-135 (240)
70 PRK13942 protein-L-isoaspartat 99.2 1.4E-10 2.9E-15 106.8 12.1 110 128-256 65-175 (212)
71 COG1092 Predicted SAM-dependen 99.2 1.7E-10 3.7E-15 114.7 13.5 127 142-271 217-350 (393)
72 PTZ00098 phosphoethanolamine N 99.2 1.3E-10 2.8E-15 110.4 12.3 113 129-256 42-155 (263)
73 PLN02589 caffeoyl-CoA O-methyl 99.2 1.1E-10 2.4E-15 109.7 11.3 105 141-255 78-188 (247)
74 COG0220 Predicted S-adenosylme 99.2 2.4E-10 5.2E-15 106.0 13.3 115 144-262 50-169 (227)
75 COG2519 GCD14 tRNA(1-methylade 99.2 1.9E-10 4.2E-15 106.8 12.4 118 141-277 93-211 (256)
76 PF08242 Methyltransf_12: Meth 99.2 3.9E-12 8.4E-17 102.2 1.1 99 147-253 1-99 (99)
77 COG2518 Pcm Protein-L-isoaspar 99.2 1.4E-10 3E-15 105.5 10.8 100 141-258 71-170 (209)
78 PLN03075 nicotianamine synthas 99.2 1.9E-10 4.2E-15 110.2 12.1 109 142-257 123-233 (296)
79 smart00828 PKS_MT Methyltransf 99.2 1.1E-10 2.5E-15 107.5 10.0 103 144-256 1-103 (224)
80 TIGR00406 prmA ribosomal prote 99.2 4.3E-10 9.3E-15 108.2 14.3 147 110-279 128-277 (288)
81 COG2227 UbiG 2-polyprenyl-3-me 99.2 1.7E-10 3.7E-15 106.4 10.8 105 142-259 59-163 (243)
82 PLN02396 hexaprenyldihydroxybe 99.2 2E-10 4.4E-15 112.0 11.6 106 142-258 131-236 (322)
83 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.5E-09 3.2E-14 99.0 16.2 144 100-257 13-159 (199)
84 PF05401 NodS: Nodulation prot 99.2 2.4E-10 5.3E-15 102.7 10.5 126 141-279 42-173 (201)
85 PF06325 PrmA: Ribosomal prote 99.1 9.4E-11 2E-15 112.8 8.3 164 111-304 131-294 (295)
86 PRK11873 arsM arsenite S-adeno 99.1 4.2E-10 9.1E-15 107.0 12.7 106 141-256 76-182 (272)
87 TIGR00477 tehB tellurite resis 99.1 3.1E-10 6.8E-15 103.0 11.2 102 142-255 30-131 (195)
88 PRK10258 biotin biosynthesis p 99.1 3.7E-10 7.9E-15 106.1 11.9 99 142-257 42-140 (251)
89 PRK11783 rlmL 23S rRNA m(2)G24 99.1 4.5E-10 9.9E-15 120.3 13.4 113 142-258 538-657 (702)
90 PF01135 PCMT: Protein-L-isoas 99.1 3.1E-10 6.8E-15 104.2 10.3 112 127-257 60-172 (209)
91 PRK11188 rrmJ 23S rRNA methylt 99.1 8.3E-10 1.8E-14 101.4 12.8 123 141-283 50-186 (209)
92 PLN02490 MPBQ/MSBQ methyltrans 99.1 1E-09 2.3E-14 107.6 14.2 102 142-256 113-214 (340)
93 PLN02336 phosphoethanolamine N 99.1 6.7E-10 1.5E-14 113.9 13.3 104 141-256 265-368 (475)
94 PLN02672 methionine S-methyltr 99.1 1.4E-09 3.1E-14 119.6 15.4 149 108-258 85-279 (1082)
95 PRK06922 hypothetical protein; 99.1 4.9E-10 1.1E-14 116.8 11.0 111 142-257 418-537 (677)
96 COG2264 PrmA Ribosomal protein 99.1 1.1E-09 2.4E-14 104.9 12.5 129 111-257 132-263 (300)
97 PRK14968 putative methyltransf 99.1 1.6E-09 3.6E-14 96.5 12.8 112 141-259 22-150 (188)
98 PRK08317 hypothetical protein; 99.1 1.6E-09 3.4E-14 99.7 12.9 105 141-256 18-123 (241)
99 PRK12335 tellurite resistance 99.1 6.7E-10 1.4E-14 106.8 10.7 102 142-255 120-221 (287)
100 PRK11088 rrmA 23S rRNA methylt 99.1 8.3E-10 1.8E-14 105.3 10.9 96 142-259 85-183 (272)
101 KOG1271 Methyltransferases [Ge 99.1 1.3E-09 2.8E-14 96.3 10.6 111 142-259 67-183 (227)
102 TIGR01177 conserved hypothetic 99.0 1.7E-09 3.6E-14 106.0 12.2 110 141-258 181-295 (329)
103 PF08704 GCD14: tRNA methyltra 99.0 2.7E-09 5.9E-14 100.2 13.0 121 140-276 38-161 (247)
104 PHA03411 putative methyltransf 99.0 1.8E-09 4E-14 102.3 11.8 118 142-271 64-198 (279)
105 PRK10901 16S rRNA methyltransf 99.0 3.1E-09 6.7E-14 107.8 14.2 116 141-261 243-376 (427)
106 PRK00216 ubiE ubiquinone/menaq 99.0 2.4E-09 5.2E-14 98.8 12.2 105 142-255 51-156 (239)
107 PRK11705 cyclopropane fatty ac 99.0 1.8E-09 3.9E-14 107.9 12.1 101 141-257 166-267 (383)
108 TIGR03587 Pse_Me-ase pseudamin 99.0 3.6E-09 7.9E-14 96.8 13.1 94 141-248 42-135 (204)
109 KOG1540 Ubiquinone biosynthesi 99.0 3.2E-09 6.9E-14 98.4 12.5 107 142-255 100-212 (296)
110 TIGR00438 rrmJ cell division p 99.0 3.9E-09 8.4E-14 95.1 12.5 120 141-279 31-164 (188)
111 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 6.3E-09 1.4E-13 95.0 13.9 104 141-256 38-142 (223)
112 PRK14902 16S rRNA methyltransf 99.0 4.3E-09 9.2E-14 107.3 14.0 116 141-261 249-383 (444)
113 PRK00312 pcm protein-L-isoaspa 99.0 2.3E-09 4.9E-14 98.3 10.9 99 141-257 77-175 (212)
114 PF10672 Methyltrans_SAM: S-ad 99.0 2.9E-09 6.3E-14 102.0 11.9 132 142-276 123-257 (286)
115 TIGR02716 C20_methyl_CrtF C-20 99.0 2E-09 4.4E-14 104.2 11.1 106 141-256 148-253 (306)
116 PRK14904 16S rRNA methyltransf 99.0 9.5E-09 2.1E-13 104.7 16.3 114 141-261 249-381 (445)
117 KOG1270 Methyltransferases [Co 99.0 6.6E-10 1.4E-14 103.4 7.0 104 143-258 90-196 (282)
118 TIGR00446 nop2p NOL1/NOP2/sun 99.0 8.8E-09 1.9E-13 97.9 14.7 131 141-279 70-219 (264)
119 TIGR00095 RNA methyltransferas 99.0 6.8E-09 1.5E-13 93.9 13.0 107 142-257 49-159 (189)
120 PRK13943 protein-L-isoaspartat 99.0 7.9E-09 1.7E-13 100.8 14.2 101 141-257 79-180 (322)
121 cd02440 AdoMet_MTases S-adenos 99.0 6.4E-09 1.4E-13 81.3 10.8 103 145-256 1-103 (107)
122 smart00650 rADc Ribosomal RNA 99.0 4.9E-09 1.1E-13 92.8 10.8 100 142-258 13-114 (169)
123 PRK15068 tRNA mo(5)U34 methylt 99.0 9.4E-09 2E-13 100.5 13.7 117 126-256 109-225 (322)
124 PHA03412 putative methyltransf 99.0 4.6E-09 1E-13 97.5 10.6 101 142-255 49-160 (241)
125 PTZ00146 fibrillarin; Provisio 98.9 3.4E-08 7.4E-13 94.6 16.7 148 141-304 131-286 (293)
126 TIGR02021 BchM-ChlM magnesium 98.9 8.3E-09 1.8E-13 95.0 12.2 102 142-255 55-156 (219)
127 PRK14903 16S rRNA methyltransf 98.9 1.4E-08 3E-13 103.1 14.7 114 141-259 236-368 (431)
128 TIGR00563 rsmB ribosomal RNA s 98.9 1.1E-08 2.3E-13 103.8 13.6 118 141-261 237-372 (426)
129 PLN02336 phosphoethanolamine N 98.9 3.4E-09 7.4E-14 108.7 10.1 105 142-256 37-141 (475)
130 TIGR03438 probable methyltrans 98.9 9.4E-09 2E-13 99.6 12.5 112 141-257 62-177 (301)
131 KOG2904 Predicted methyltransf 98.9 2.1E-08 4.6E-13 93.8 13.9 160 93-258 99-286 (328)
132 PRK14901 16S rRNA methyltransf 98.9 1.5E-08 3.3E-13 103.0 14.2 115 141-259 251-386 (434)
133 PF03848 TehB: Tellurite resis 98.9 5.1E-09 1.1E-13 94.7 9.5 102 142-255 30-131 (192)
134 KOG2899 Predicted methyltransf 98.9 8.8E-09 1.9E-13 94.8 10.7 125 142-271 58-222 (288)
135 TIGR00452 methyltransferase, p 98.9 1.7E-08 3.6E-13 98.2 13.3 113 127-256 109-224 (314)
136 PF03602 Cons_hypoth95: Conser 98.9 4.6E-09 1E-13 94.6 8.7 109 142-258 42-154 (183)
137 PRK05785 hypothetical protein; 98.9 1.9E-08 4.1E-13 93.5 12.6 91 142-251 51-141 (226)
138 KOG2352 Predicted spermine/spe 98.9 2.1E-09 4.6E-14 107.8 6.4 149 126-280 272-437 (482)
139 PRK01544 bifunctional N5-gluta 98.9 2.3E-08 5.1E-13 103.4 14.3 116 142-261 347-466 (506)
140 KOG3010 Methyltransferase [Gen 98.9 4.1E-09 8.8E-14 97.0 7.4 108 140-259 31-139 (261)
141 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.3E-08 2.8E-13 93.8 10.4 110 141-255 33-150 (213)
142 PRK05134 bifunctional 3-demeth 98.9 2.1E-08 4.5E-13 93.0 11.9 104 142-257 48-151 (233)
143 PF13489 Methyltransf_23: Meth 98.9 1.3E-08 2.8E-13 87.9 9.2 96 141-258 21-116 (161)
144 PRK13168 rumA 23S rRNA m(5)U19 98.8 3.7E-08 8E-13 100.4 13.8 114 127-257 285-400 (443)
145 COG2263 Predicted RNA methylas 98.8 2.8E-08 6E-13 88.7 10.9 93 142-247 45-137 (198)
146 TIGR01983 UbiG ubiquinone bios 98.8 3E-08 6.6E-13 91.1 11.4 105 142-257 45-149 (224)
147 PRK06202 hypothetical protein; 98.8 1.9E-08 4.2E-13 93.5 10.2 102 141-254 59-164 (232)
148 TIGR00479 rumA 23S rRNA (uraci 98.8 2E-07 4.3E-12 94.7 17.8 102 142-256 292-395 (431)
149 smart00138 MeTrc Methyltransfe 98.8 1.2E-08 2.5E-13 97.1 8.1 111 142-256 99-241 (264)
150 KOG4300 Predicted methyltransf 98.8 1.7E-08 3.7E-13 90.9 8.6 104 143-256 77-181 (252)
151 PRK07580 Mg-protoporphyrin IX 98.8 5.7E-08 1.2E-12 89.6 12.1 102 141-254 62-163 (230)
152 PRK03522 rumB 23S rRNA methylu 98.8 7.6E-08 1.7E-12 93.8 13.4 102 142-257 173-274 (315)
153 PRK04338 N(2),N(2)-dimethylgua 98.8 5.4E-08 1.2E-12 97.2 12.2 100 144-257 59-158 (382)
154 TIGR02085 meth_trns_rumB 23S r 98.8 2.2E-07 4.9E-12 92.7 16.6 102 142-257 233-334 (374)
155 PRK13255 thiopurine S-methyltr 98.8 4.1E-08 8.9E-13 90.8 10.4 107 142-253 37-151 (218)
156 PLN02585 magnesium protoporphy 98.8 1.2E-07 2.6E-12 92.3 13.9 123 142-279 144-267 (315)
157 PF07021 MetW: Methionine bios 98.7 3.5E-08 7.7E-13 88.6 8.3 72 141-224 12-83 (193)
158 PF02475 Met_10: Met-10+ like- 98.7 5.9E-08 1.3E-12 88.5 9.8 128 108-254 71-199 (200)
159 KOG1663 O-methyltransferase [S 98.7 1.2E-07 2.7E-12 86.9 11.7 120 122-256 58-182 (237)
160 PRK05031 tRNA (uracil-5-)-meth 98.7 6.9E-07 1.5E-11 88.8 17.2 99 143-256 207-319 (362)
161 TIGR02143 trmA_only tRNA (urac 98.7 9.3E-07 2E-11 87.6 17.5 100 143-257 198-311 (353)
162 COG0742 N6-adenine-specific me 98.7 3.3E-07 7.2E-12 82.2 12.7 110 142-258 43-155 (187)
163 PF05891 Methyltransf_PK: AdoM 98.7 3.7E-08 8.1E-13 90.0 6.6 133 114-255 24-159 (218)
164 PF00891 Methyltransf_2: O-met 98.7 8.4E-08 1.8E-12 89.6 8.7 98 141-256 99-198 (241)
165 COG3963 Phospholipid N-methylt 98.6 5.3E-07 1.2E-11 78.9 11.7 108 142-260 48-159 (194)
166 COG4976 Predicted methyltransf 98.6 1.1E-08 2.3E-13 93.6 1.2 102 143-259 126-227 (287)
167 TIGR00308 TRM1 tRNA(guanine-26 98.6 3.1E-07 6.7E-12 91.4 11.4 100 144-256 46-146 (374)
168 PRK11727 23S rRNA mA1618 methy 98.6 1.4E-06 3E-11 85.0 15.4 82 142-226 114-199 (321)
169 TIGR02081 metW methionine bios 98.5 5.5E-07 1.2E-11 81.4 10.0 92 142-249 13-104 (194)
170 PTZ00338 dimethyladenosine tra 98.5 1.5E-06 3.2E-11 84.0 13.0 75 142-225 36-110 (294)
171 PRK11933 yebU rRNA (cytosine-C 98.5 2.9E-06 6.3E-11 86.8 15.7 114 141-259 112-244 (470)
172 COG2520 Predicted methyltransf 98.5 1.2E-05 2.6E-10 78.7 19.1 175 108-301 158-335 (341)
173 PRK13256 thiopurine S-methyltr 98.5 8.9E-07 1.9E-11 82.2 10.5 111 141-255 42-161 (226)
174 KOG1541 Predicted protein carb 98.5 8.3E-07 1.8E-11 81.0 9.6 125 142-280 50-182 (270)
175 PF05185 PRMT5: PRMT5 arginine 98.5 4.4E-07 9.5E-12 92.4 8.5 111 143-261 187-301 (448)
176 PF09445 Methyltransf_15: RNA 98.4 5.1E-07 1.1E-11 79.6 7.4 80 144-230 1-81 (163)
177 PRK14896 ksgA 16S ribosomal RN 98.4 2.7E-06 5.8E-11 80.6 12.8 72 142-225 29-100 (258)
178 PF10294 Methyltransf_16: Puta 98.4 1.1E-06 2.5E-11 78.2 9.5 109 141-255 44-154 (173)
179 KOG1661 Protein-L-isoaspartate 98.4 1.3E-06 2.9E-11 79.1 9.0 104 142-257 82-193 (237)
180 KOG1709 Guanidinoacetate methy 98.4 2.1E-06 4.5E-11 78.0 10.3 120 123-255 85-204 (271)
181 PF01170 UPF0020: Putative RNA 98.4 1.1E-06 2.3E-11 78.9 8.1 111 141-256 27-150 (179)
182 PRK00274 ksgA 16S ribosomal RN 98.4 1.6E-06 3.5E-11 82.8 9.6 73 141-224 41-113 (272)
183 KOG3191 Predicted N6-DNA-methy 98.4 5.9E-06 1.3E-10 73.3 12.1 123 142-276 43-183 (209)
184 COG1041 Predicted DNA modifica 98.4 2.5E-06 5.4E-11 83.1 10.7 120 128-258 185-311 (347)
185 PF05724 TPMT: Thiopurine S-me 98.4 1.1E-06 2.3E-11 81.4 7.6 107 141-252 36-150 (218)
186 PF03291 Pox_MCEL: mRNA cappin 98.3 1.5E-06 3.2E-11 85.3 7.9 115 142-257 62-186 (331)
187 TIGR00755 ksgA dimethyladenosi 98.3 5.2E-06 1.1E-10 78.3 11.2 73 141-225 28-103 (253)
188 PF08003 Methyltransf_9: Prote 98.3 7.6E-06 1.7E-10 78.5 12.1 115 126-257 102-219 (315)
189 COG0030 KsgA Dimethyladenosine 98.3 3.8E-06 8.3E-11 79.2 9.7 74 143-226 31-105 (259)
190 PF02527 GidB: rRNA small subu 98.2 2.1E-05 4.6E-10 70.8 12.4 100 145-259 51-150 (184)
191 PF05219 DREV: DREV methyltran 98.2 1.8E-05 4E-10 74.2 11.2 92 142-255 94-186 (265)
192 PRK00050 16S rRNA m(4)C1402 me 98.2 1.3E-05 2.9E-10 77.3 10.4 87 129-224 9-98 (296)
193 TIGR02987 met_A_Alw26 type II 98.1 1.3E-05 2.7E-10 83.6 10.6 132 142-277 31-216 (524)
194 PF13578 Methyltransf_24: Meth 98.1 1.2E-06 2.6E-11 71.2 2.1 97 147-255 1-103 (106)
195 KOG1975 mRNA cap methyltransfe 98.1 1.5E-05 3.1E-10 76.6 9.3 116 141-257 116-237 (389)
196 PLN02232 ubiquinone biosynthes 98.1 1E-05 2.2E-10 71.1 7.8 80 170-256 1-80 (160)
197 PF01728 FtsJ: FtsJ-like methy 98.1 2.1E-05 4.5E-10 70.2 9.5 136 129-284 10-161 (181)
198 COG2265 TrmA SAM-dependent met 98.1 8.8E-05 1.9E-09 75.3 14.9 102 142-256 293-395 (432)
199 PF02384 N6_Mtase: N-6 DNA Met 98.1 9.2E-06 2E-10 78.7 7.2 134 142-277 46-204 (311)
200 PF05430 Methyltransf_30: S-ad 98.0 2E-05 4.4E-10 66.5 8.2 93 196-304 31-123 (124)
201 KOG2361 Predicted methyltransf 98.0 7.1E-06 1.5E-10 75.9 5.7 107 142-256 71-182 (264)
202 PRK11783 rlmL 23S rRNA m(2)G24 98.0 2.8E-05 6E-10 83.8 11.1 113 142-257 190-347 (702)
203 TIGR00478 tly hemolysin TlyA f 98.0 5E-05 1.1E-09 70.7 11.4 68 111-181 46-113 (228)
204 COG0144 Sun tRNA and rRNA cyto 98.0 5.8E-05 1.3E-09 74.9 12.2 116 142-261 156-292 (355)
205 KOG2940 Predicted methyltransf 98.0 7.5E-06 1.6E-10 75.2 5.3 98 143-255 73-172 (325)
206 COG4076 Predicted RNA methylas 98.0 1.4E-05 3.1E-10 71.3 6.5 113 126-256 22-134 (252)
207 PF05958 tRNA_U5-meth_tr: tRNA 98.0 8.1E-05 1.8E-09 73.8 12.4 129 143-294 197-339 (352)
208 KOG3420 Predicted RNA methylas 98.0 2E-05 4.4E-10 67.6 6.8 97 142-248 48-144 (185)
209 KOG1499 Protein arginine N-met 98.0 2.1E-05 4.5E-10 76.5 7.5 102 142-255 60-165 (346)
210 PRK01747 mnmC bifunctional tRN 98.0 4.6E-05 9.9E-10 81.6 10.8 113 143-257 58-206 (662)
211 KOG0820 Ribosomal RNA adenine 97.9 3.2E-05 6.9E-10 72.8 8.2 79 141-228 57-135 (315)
212 COG0293 FtsJ 23S rRNA methylas 97.9 0.00015 3.3E-09 66.0 12.0 123 141-283 44-180 (205)
213 PF03059 NAS: Nicotianamine sy 97.9 0.00012 2.6E-09 69.9 11.0 108 142-257 120-230 (276)
214 PF12147 Methyltransf_20: Puta 97.9 0.0002 4.2E-09 68.4 12.1 117 141-263 134-254 (311)
215 COG0357 GidB Predicted S-adeno 97.8 0.00043 9.4E-09 63.8 13.2 99 143-256 68-167 (215)
216 PF06080 DUF938: Protein of un 97.8 7.7E-05 1.7E-09 68.0 7.8 110 145-257 28-141 (204)
217 KOG2915 tRNA(1-methyladenosine 97.8 0.00022 4.7E-09 67.3 10.9 102 141-256 104-209 (314)
218 PF01861 DUF43: Protein of unk 97.8 0.00028 6.2E-09 65.7 11.6 101 142-253 44-144 (243)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00023 5.1E-09 68.4 11.5 132 142-279 85-239 (283)
220 PRK10742 putative methyltransf 97.7 0.00036 7.8E-09 65.5 11.4 82 145-229 91-177 (250)
221 KOG1500 Protein arginine N-met 97.7 0.00013 2.9E-09 70.4 8.5 100 142-254 177-279 (517)
222 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00011 2.3E-09 69.9 7.6 110 129-256 20-133 (262)
223 PRK04148 hypothetical protein; 97.7 0.00015 3.2E-09 61.9 7.0 67 142-222 16-83 (134)
224 PF01739 CheR: CheR methyltran 97.6 0.00021 4.6E-09 65.0 8.5 111 142-256 31-174 (196)
225 KOG0822 Protein kinase inhibit 97.5 0.00055 1.2E-08 69.7 10.0 125 143-276 368-497 (649)
226 PF01269 Fibrillarin: Fibrilla 97.5 0.0007 1.5E-08 62.4 9.8 123 141-279 72-206 (229)
227 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00036 7.9E-09 69.7 8.0 104 143-257 50-154 (377)
228 KOG3178 Hydroxyindole-O-methyl 97.5 0.00032 7E-09 68.4 7.3 96 143-255 178-273 (342)
229 PF04816 DUF633: Family of unk 97.4 0.0011 2.4E-08 60.8 10.0 101 146-257 1-101 (205)
230 KOG2730 Methylase [General fun 97.4 0.00036 7.9E-09 63.9 6.5 84 142-232 94-179 (263)
231 COG0116 Predicted N6-adenine-s 97.4 0.00089 1.9E-08 66.4 9.4 110 143-257 192-344 (381)
232 PF08123 DOT1: Histone methyla 97.3 0.00089 1.9E-08 61.4 8.5 118 129-255 32-156 (205)
233 TIGR03439 methyl_EasF probable 97.3 0.0038 8.3E-08 61.0 12.7 113 141-258 75-198 (319)
234 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0018 3.8E-08 63.7 10.2 102 143-257 53-154 (380)
235 TIGR00006 S-adenosyl-methyltra 97.3 0.0021 4.6E-08 62.3 10.7 88 129-224 10-100 (305)
236 PF05148 Methyltransf_8: Hypot 97.3 0.00059 1.3E-08 62.3 6.4 104 141-276 71-175 (219)
237 PRK10611 chemotaxis methyltran 97.2 0.00081 1.8E-08 64.8 7.3 110 142-255 115-260 (287)
238 PF04989 CmcI: Cephalosporin h 97.2 0.0027 5.8E-08 58.1 9.5 116 124-256 20-146 (206)
239 KOG4589 Cell division protein 97.1 0.011 2.4E-07 53.1 12.7 122 142-283 69-205 (232)
240 PRK11760 putative 23S rRNA C24 97.1 0.0014 3E-08 64.2 6.9 87 141-250 210-296 (357)
241 COG0500 SmtA SAM-dependent met 97.0 0.0069 1.5E-07 49.0 10.1 103 146-258 52-156 (257)
242 PF09243 Rsm22: Mitochondrial 97.0 0.0039 8.4E-08 59.7 9.8 47 142-188 33-80 (274)
243 TIGR01444 fkbM_fam methyltrans 97.0 0.0018 3.9E-08 55.0 6.7 56 146-205 2-57 (143)
244 COG2384 Predicted SAM-dependen 97.0 0.0042 9.1E-08 57.1 9.2 105 142-257 16-120 (226)
245 PF07942 N2227: N2227-like pro 97.0 0.0057 1.2E-07 58.3 10.2 111 142-258 56-203 (270)
246 COG1352 CheR Methylase of chem 97.0 0.0033 7.2E-08 59.9 8.5 110 142-255 96-239 (268)
247 PF05971 Methyltransf_10: Prot 96.9 0.0074 1.6E-07 58.3 10.3 97 125-226 82-187 (299)
248 KOG3115 Methyltransferase-like 96.9 0.0037 8.1E-08 56.7 7.5 114 144-258 62-184 (249)
249 PF03141 Methyltransf_29: Puta 96.8 0.0027 5.8E-08 64.8 7.0 133 109-259 82-221 (506)
250 PF01795 Methyltransf_5: MraW 96.8 0.0039 8.4E-08 60.6 7.3 88 129-224 10-101 (310)
251 KOG1562 Spermidine synthase [A 96.8 0.00094 2E-08 63.7 2.8 157 84-257 122-293 (337)
252 PF07091 FmrO: Ribosomal RNA m 96.7 0.0039 8.4E-08 58.5 6.4 74 141-222 104-177 (251)
253 KOG2187 tRNA uracil-5-methyltr 96.6 0.0089 1.9E-07 61.1 8.6 107 141-260 382-492 (534)
254 KOG3045 Predicted RNA methylas 96.6 0.0079 1.7E-07 56.6 7.6 91 142-263 180-271 (325)
255 PF06962 rRNA_methylase: Putat 96.6 0.028 6.1E-07 48.4 10.4 87 168-257 1-92 (140)
256 COG0275 Predicted S-adenosylme 96.5 0.018 3.8E-07 55.5 9.9 88 129-224 13-104 (314)
257 PRK11524 putative methyltransf 96.5 0.017 3.6E-07 55.6 9.4 63 195-257 6-80 (284)
258 COG1889 NOP1 Fibrillarin-like 96.4 0.042 9.1E-07 50.0 11.1 125 141-277 75-205 (231)
259 KOG1122 tRNA and rRNA cytosine 96.4 0.037 8.1E-07 55.4 11.3 132 142-279 241-391 (460)
260 PF04445 SAM_MT: Putative SAM- 96.4 0.0047 1E-07 57.6 4.7 82 144-228 77-163 (234)
261 PF04672 Methyltransf_19: S-ad 96.3 0.024 5.2E-07 53.9 9.5 108 142-257 68-190 (267)
262 COG3897 Predicted methyltransf 96.3 0.0071 1.5E-07 54.7 5.1 98 142-255 79-176 (218)
263 COG1063 Tdh Threonine dehydrog 96.2 0.047 1E-06 54.0 11.2 98 143-257 169-269 (350)
264 KOG1099 SAM-dependent methyltr 96.2 0.06 1.3E-06 49.9 10.8 147 142-311 41-211 (294)
265 KOG3201 Uncharacterized conser 96.1 0.013 2.8E-07 51.5 5.5 110 143-257 30-140 (201)
266 COG1568 Predicted methyltransf 96.0 0.02 4.4E-07 54.4 7.1 102 143-254 153-257 (354)
267 KOG1253 tRNA methyltransferase 96.0 0.0085 1.9E-07 60.9 4.6 104 142-256 109-215 (525)
268 PRK13699 putative methylase; P 95.9 0.014 3E-07 54.4 5.8 59 198-256 2-71 (227)
269 PF13679 Methyltransf_32: Meth 95.9 0.018 3.8E-07 49.4 6.0 76 141-221 24-104 (141)
270 KOG2198 tRNA cytosine-5-methyl 95.9 0.052 1.1E-06 53.6 9.5 136 140-279 153-320 (375)
271 KOG1269 SAM-dependent methyltr 95.8 0.017 3.7E-07 57.4 5.8 116 129-256 98-214 (364)
272 KOG2352 Predicted spermine/spe 95.8 0.051 1.1E-06 55.4 9.2 105 145-257 51-161 (482)
273 PTZ00357 methyltransferase; Pr 95.8 0.058 1.3E-06 57.1 9.7 106 145-252 703-830 (1072)
274 COG1189 Predicted rRNA methyla 95.7 0.082 1.8E-06 49.3 9.6 108 129-255 68-176 (245)
275 KOG3987 Uncharacterized conser 95.6 0.0039 8.3E-08 56.8 0.5 106 128-255 98-205 (288)
276 KOG1596 Fibrillarin and relate 95.4 0.098 2.1E-06 48.9 8.7 121 141-277 155-286 (317)
277 COG1064 AdhP Zn-dependent alco 95.3 0.089 1.9E-06 51.8 9.0 94 141-257 165-259 (339)
278 KOG4058 Uncharacterized conser 95.3 0.021 4.5E-07 49.5 4.0 76 129-208 58-134 (199)
279 PRK09424 pntA NAD(P) transhydr 95.2 0.13 2.8E-06 53.5 10.4 109 142-256 164-284 (509)
280 cd08283 FDH_like_1 Glutathione 95.1 0.16 3.4E-06 50.7 10.4 109 141-257 183-306 (386)
281 cd00315 Cyt_C5_DNA_methylase C 94.9 0.068 1.5E-06 51.1 6.7 148 145-306 2-165 (275)
282 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.9 0.01 2.2E-07 56.2 1.0 113 142-256 56-198 (256)
283 PRK09880 L-idonate 5-dehydroge 94.7 0.23 4.9E-06 48.5 10.2 97 142-257 169-266 (343)
284 PRK05562 precorrin-2 dehydroge 94.7 0.19 4.1E-06 46.7 8.9 108 125-259 7-118 (223)
285 TIGR00518 alaDH alanine dehydr 94.6 0.34 7.4E-06 48.4 11.2 100 142-256 166-266 (370)
286 KOG0024 Sorbitol dehydrogenase 94.6 0.23 5E-06 48.4 9.4 101 142-255 169-271 (354)
287 cd08281 liver_ADH_like1 Zinc-d 94.5 0.25 5.5E-06 48.8 10.0 100 141-257 190-290 (371)
288 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.21 4.5E-06 43.5 8.2 145 145-305 1-153 (157)
289 COG0286 HsdM Type I restrictio 94.4 0.32 6.9E-06 50.5 10.6 122 129-255 175-324 (489)
290 TIGR03451 mycoS_dep_FDH mycoth 94.3 0.32 7E-06 47.7 10.1 100 141-257 175-276 (358)
291 PF00107 ADH_zinc_N: Zinc-bind 94.1 0.12 2.7E-06 42.7 5.9 88 152-257 1-89 (130)
292 PF11968 DUF3321: Putative met 94.1 0.089 1.9E-06 48.5 5.1 87 143-252 52-139 (219)
293 COG5459 Predicted rRNA methyla 94.1 0.079 1.7E-06 52.0 5.0 110 142-256 113-224 (484)
294 PRK10309 galactitol-1-phosphat 94.0 0.48 1E-05 46.2 10.7 101 141-257 159-260 (347)
295 PHA01634 hypothetical protein 94.0 0.19 4.2E-06 42.5 6.5 74 142-225 28-101 (156)
296 cd05188 MDR Medium chain reduc 93.9 0.59 1.3E-05 42.9 10.6 99 141-257 133-232 (271)
297 PF10354 DUF2431: Domain of un 93.9 0.085 1.9E-06 46.7 4.6 105 147-255 1-123 (166)
298 PF14314 Methyltrans_Mon: Viru 93.9 0.52 1.1E-05 50.3 11.0 161 142-305 322-501 (675)
299 PF04378 RsmJ: Ribosomal RNA s 93.7 1.6 3.5E-05 41.1 12.9 118 147-278 62-183 (245)
300 cd08293 PTGR2 Prostaglandin re 93.6 0.52 1.1E-05 45.7 10.1 97 144-257 156-254 (345)
301 PF07279 DUF1442: Protein of u 93.5 1.3 2.8E-05 40.8 11.5 90 129-225 30-124 (218)
302 KOG1501 Arginine N-methyltrans 93.4 0.12 2.7E-06 52.0 5.0 101 145-252 69-169 (636)
303 PF03721 UDPG_MGDP_dh_N: UDP-g 93.3 2 4.4E-05 38.6 12.6 137 145-292 2-153 (185)
304 COG0604 Qor NADPH:quinone redu 93.3 0.47 1E-05 46.5 9.2 98 141-257 141-241 (326)
305 KOG0821 Predicted ribosomal RN 93.3 0.071 1.5E-06 49.2 3.1 59 144-208 52-110 (326)
306 KOG1331 Predicted methyltransf 93.1 0.047 1E-06 52.1 1.7 98 143-257 46-143 (293)
307 TIGR03366 HpnZ_proposed putati 92.8 1.3 2.9E-05 41.9 11.3 97 142-257 120-218 (280)
308 COG4121 Uncharacterized conser 92.6 0.16 3.4E-06 48.0 4.4 113 144-257 60-208 (252)
309 KOG2671 Putative RNA methylase 92.5 0.1 2.3E-06 51.0 3.2 112 141-257 207-354 (421)
310 cd08239 THR_DH_like L-threonin 92.5 1 2.3E-05 43.5 10.3 98 142-257 163-262 (339)
311 TIGR00561 pntA NAD(P) transhyd 92.5 1 2.2E-05 47.0 10.5 106 142-254 163-281 (511)
312 cd08254 hydroxyacyl_CoA_DH 6-h 92.3 1 2.2E-05 43.1 10.0 99 141-257 164-263 (338)
313 COG0686 Ald Alanine dehydrogen 92.3 1.1 2.4E-05 43.6 9.7 98 142-254 167-265 (371)
314 PF12692 Methyltransf_17: S-ad 92.0 0.15 3.3E-06 44.1 3.2 103 142-255 28-132 (160)
315 PF01555 N6_N4_Mtase: DNA meth 91.9 0.24 5.2E-06 44.7 4.7 53 130-184 179-231 (231)
316 PF02254 TrkA_N: TrkA-N domain 91.8 1.3 2.7E-05 35.9 8.5 94 146-259 1-98 (116)
317 PLN02353 probable UDP-glucose 91.7 3.4 7.4E-05 42.7 13.4 138 145-292 3-158 (473)
318 cd05278 FDH_like Formaldehyde 91.7 1.6 3.4E-05 42.2 10.5 99 141-256 166-266 (347)
319 PF05711 TylF: Macrocin-O-meth 91.5 1 2.2E-05 42.6 8.5 108 142-257 74-212 (248)
320 PLN02740 Alcohol dehydrogenase 91.4 1.6 3.5E-05 43.3 10.5 100 141-257 197-300 (381)
321 KOG2078 tRNA modification enzy 91.4 0.83 1.8E-05 46.1 8.1 102 101-211 212-314 (495)
322 PRK10637 cysG siroheme synthas 91.4 1 2.3E-05 46.2 9.2 99 134-259 3-105 (457)
323 PF11599 AviRa: RRNA methyltra 91.4 0.25 5.4E-06 45.5 4.1 59 127-188 39-99 (246)
324 PRK11524 putative methyltransf 91.4 0.38 8.2E-06 46.2 5.7 57 129-187 195-251 (284)
325 cd08285 NADP_ADH NADP(H)-depen 91.4 1.7 3.7E-05 42.3 10.4 99 141-256 165-265 (351)
326 COG0270 Dcm Site-specific DNA 91.1 3.3 7.1E-05 40.6 12.1 123 143-277 3-138 (328)
327 COG2961 ComJ Protein involved 91.1 3.7 7.9E-05 38.8 11.5 118 146-277 92-213 (279)
328 PF06460 NSP13: Coronavirus NS 91.1 1.6 3.5E-05 41.3 9.2 117 126-261 43-174 (299)
329 cd05285 sorbitol_DH Sorbitol d 91.1 2.1 4.5E-05 41.5 10.7 100 141-257 161-265 (343)
330 PF00145 DNA_methylase: C-5 cy 91.0 1.8 3.8E-05 41.5 9.9 146 145-306 2-164 (335)
331 cd08238 sorbose_phosphate_red 90.9 2.7 5.9E-05 42.2 11.6 103 142-255 175-286 (410)
332 PLN02827 Alcohol dehydrogenase 90.9 1.7 3.8E-05 43.1 10.1 100 141-257 192-295 (378)
333 TIGR02825 B4_12hDH leukotriene 90.8 2.2 4.8E-05 41.0 10.5 98 141-257 137-237 (325)
334 PF01262 AlaDh_PNT_C: Alanine 90.7 0.69 1.5E-05 40.7 6.3 106 142-254 19-136 (168)
335 TIGR01470 cysG_Nterm siroheme 90.7 2.3 5E-05 38.9 9.9 91 142-259 8-102 (205)
336 cd08230 glucose_DH Glucose deh 90.7 1.9 4.1E-05 42.2 10.0 94 142-257 172-269 (355)
337 TIGR03201 dearomat_had 6-hydro 90.6 1.9 4.2E-05 42.1 9.9 100 141-257 165-272 (349)
338 cd08294 leukotriene_B4_DH_like 90.6 2.1 4.5E-05 40.9 10.0 97 141-256 142-240 (329)
339 PRK11064 wecC UDP-N-acetyl-D-m 90.4 3.1 6.7E-05 42.2 11.4 105 144-261 4-123 (415)
340 PRK08293 3-hydroxybutyryl-CoA 90.3 2.3 5.1E-05 40.6 10.0 103 144-259 4-122 (287)
341 PF02737 3HCDH_N: 3-hydroxyacy 90.2 1.3 2.8E-05 39.5 7.7 101 145-259 1-116 (180)
342 PLN03154 putative allyl alcoho 90.2 2.3 5E-05 41.7 10.1 99 141-257 157-258 (348)
343 TIGR01202 bchC 2-desacetyl-2-h 90.1 1.7 3.6E-05 41.9 8.9 87 142-257 144-231 (308)
344 TIGR00497 hsdM type I restrict 90.0 5.9 0.00013 41.2 13.5 159 144-306 219-405 (501)
345 PRK09260 3-hydroxybutyryl-CoA 89.7 1.1 2.4E-05 42.9 7.3 103 144-259 2-119 (288)
346 cd08232 idonate-5-DH L-idonate 89.6 2.4 5.1E-05 40.9 9.6 97 142-257 165-262 (339)
347 PRK05808 3-hydroxybutyryl-CoA 89.5 1.1 2.3E-05 42.8 7.0 102 144-259 4-120 (282)
348 TIGR02818 adh_III_F_hyde S-(hy 89.5 3.2 6.8E-05 41.0 10.6 100 141-257 184-287 (368)
349 PRK07502 cyclohexadienyl dehyd 89.4 2.3 5E-05 41.1 9.3 90 144-255 7-98 (307)
350 cd08295 double_bond_reductase_ 89.3 3.5 7.7E-05 39.9 10.6 99 141-257 150-251 (338)
351 cd08300 alcohol_DH_class_III c 89.3 3.4 7.3E-05 40.7 10.6 99 141-256 185-287 (368)
352 PRK08223 hypothetical protein; 89.2 1.2 2.7E-05 42.9 7.1 34 143-177 27-62 (287)
353 cd08278 benzyl_alcohol_DH Benz 89.2 2.9 6.3E-05 41.1 10.0 100 141-257 185-285 (365)
354 PRK00066 ldh L-lactate dehydro 88.9 5.8 0.00013 38.7 11.7 109 141-257 4-122 (315)
355 COG4798 Predicted methyltransf 88.9 0.88 1.9E-05 41.4 5.4 113 140-256 46-165 (238)
356 cd05279 Zn_ADH1 Liver alcohol 88.8 4 8.7E-05 40.1 10.7 99 141-256 182-284 (365)
357 TIGR00936 ahcY adenosylhomocys 88.8 17 0.00036 36.9 15.1 87 142-257 194-282 (406)
358 PRK05597 molybdopterin biosynt 88.7 1.5 3.3E-05 43.5 7.6 34 143-176 28-62 (355)
359 PRK07066 3-hydroxybutyryl-CoA 88.6 2.7 5.9E-05 41.2 9.2 103 143-258 7-120 (321)
360 PRK07530 3-hydroxybutyryl-CoA 88.6 2.1 4.5E-05 41.0 8.3 103 143-259 4-121 (292)
361 cd08233 butanediol_DH_like (2R 88.6 3.7 8.1E-05 39.9 10.3 100 141-257 171-272 (351)
362 COG1179 Dinucleotide-utilizing 88.5 1.5 3.3E-05 41.2 6.9 80 143-228 30-132 (263)
363 COG1062 AdhC Zn-dependent alco 88.4 6.2 0.00013 39.0 11.2 100 141-256 184-284 (366)
364 KOG2793 Putative N2,N2-dimethy 88.3 2.9 6.3E-05 39.5 8.8 105 142-253 86-195 (248)
365 PF13241 NAD_binding_7: Putati 88.3 5.1 0.00011 32.2 9.2 89 142-260 6-94 (103)
366 cd08234 threonine_DH_like L-th 88.1 3.6 7.9E-05 39.4 9.7 96 141-256 158-256 (334)
367 cd08301 alcohol_DH_plants Plan 88.1 4.1 8.9E-05 40.0 10.3 100 141-257 186-289 (369)
368 PRK15116 sulfur acceptor prote 88.0 2.2 4.7E-05 40.8 7.9 35 142-176 29-64 (268)
369 PRK06130 3-hydroxybutyryl-CoA 88.0 3.3 7.2E-05 39.9 9.3 101 144-257 5-115 (311)
370 PLN02545 3-hydroxybutyryl-CoA 87.9 2.8 6E-05 40.2 8.7 103 143-259 4-121 (295)
371 cd01487 E1_ThiF_like E1_ThiF_l 87.9 1.6 3.5E-05 38.7 6.6 31 145-176 1-33 (174)
372 PF02636 Methyltransf_28: Puta 87.8 0.48 1E-05 44.5 3.2 46 143-188 19-72 (252)
373 cd08237 ribitol-5-phosphate_DH 87.8 3.8 8.2E-05 40.0 9.7 93 141-257 162-256 (341)
374 COG0569 TrkA K+ transport syst 87.6 3.4 7.3E-05 38.3 8.7 71 144-225 1-75 (225)
375 PF10237 N6-adenineMlase: Prob 87.5 17 0.00036 32.1 12.6 121 142-295 25-149 (162)
376 PRK12475 thiamine/molybdopteri 87.4 1.6 3.5E-05 43.1 6.8 33 143-176 24-58 (338)
377 cd08277 liver_alcohol_DH_like 87.3 6 0.00013 38.9 10.8 100 141-257 183-286 (365)
378 TIGR02822 adh_fam_2 zinc-bindi 87.2 6.3 0.00014 38.2 10.9 90 141-257 164-254 (329)
379 PRK13699 putative methylase; P 87.2 1.3 2.9E-05 41.1 5.7 47 141-189 162-208 (227)
380 cd01065 NAD_bind_Shikimate_DH 87.1 15 0.00032 31.1 12.0 74 141-228 17-93 (155)
381 PRK06035 3-hydroxyacyl-CoA deh 87.0 4.7 0.0001 38.6 9.7 100 144-257 4-121 (291)
382 cd05290 LDH_3 A subgroup of L- 87.0 10 0.00022 36.9 12.0 106 145-257 1-119 (307)
383 PRK07819 3-hydroxybutyryl-CoA 87.0 2.4 5.2E-05 40.7 7.6 102 144-259 6-123 (286)
384 cd00755 YgdL_like Family of ac 86.9 1.9 4E-05 40.3 6.6 34 143-176 11-45 (231)
385 TIGR02356 adenyl_thiF thiazole 86.9 1.6 3.6E-05 39.6 6.1 33 142-175 20-54 (202)
386 PF01408 GFO_IDH_MocA: Oxidore 86.8 7.6 0.00016 31.3 9.6 107 145-277 2-112 (120)
387 PRK08268 3-hydroxy-acyl-CoA de 86.7 3.8 8.2E-05 42.8 9.4 104 142-259 6-124 (507)
388 KOG1227 Putative methyltransfe 86.7 0.71 1.5E-05 44.6 3.6 131 108-254 156-293 (351)
389 PRK08644 thiamine biosynthesis 86.3 2.3 5.1E-05 39.0 6.9 33 142-175 27-61 (212)
390 cd00401 AdoHcyase S-adenosyl-L 86.3 6.8 0.00015 39.8 10.7 87 142-257 201-289 (413)
391 PRK08328 hypothetical protein; 86.3 2.3 4.9E-05 39.6 6.8 34 143-176 27-61 (231)
392 COG0677 WecC UDP-N-acetyl-D-ma 85.9 13 0.00028 37.6 12.0 107 144-261 10-132 (436)
393 cd08236 sugar_DH NAD(P)-depend 85.8 7.7 0.00017 37.4 10.6 100 141-257 158-258 (343)
394 PRK03562 glutathione-regulated 85.8 5.3 0.00011 42.8 10.1 95 143-258 400-499 (621)
395 PTZ00117 malate dehydrogenase; 85.8 11 0.00023 36.9 11.6 105 143-256 5-121 (319)
396 COG0287 TyrA Prephenate dehydr 85.7 3.4 7.3E-05 39.7 7.8 109 144-280 4-114 (279)
397 cd01492 Aos1_SUMO Ubiquitin ac 85.5 3.5 7.6E-05 37.4 7.5 32 143-176 21-55 (197)
398 PF03269 DUF268: Caenorhabditi 85.5 2.6 5.5E-05 37.3 6.2 101 143-256 2-110 (177)
399 PRK05476 S-adenosyl-L-homocyst 85.3 17 0.00036 37.2 12.9 87 142-257 211-299 (425)
400 PRK06719 precorrin-2 dehydroge 85.1 2.8 6.1E-05 36.6 6.5 46 131-180 1-48 (157)
401 PF03141 Methyltransf_29: Puta 85.1 4.2 9.2E-05 42.0 8.5 103 141-256 364-466 (506)
402 KOG2798 Putative trehalase [Ca 84.9 1.4 3E-05 42.9 4.7 109 143-258 151-297 (369)
403 PRK09496 trkA potassium transp 84.9 5.3 0.00012 40.4 9.4 74 142-226 230-307 (453)
404 PF01488 Shikimate_DH: Shikima 84.8 8.4 0.00018 32.5 9.1 71 142-226 11-85 (135)
405 cd05291 HicDH_like L-2-hydroxy 84.7 12 0.00026 36.2 11.3 107 144-257 1-117 (306)
406 cd05288 PGDH Prostaglandin deh 84.7 8.1 0.00017 36.8 10.1 98 142-257 145-244 (329)
407 PF11899 DUF3419: Protein of u 84.4 2.1 4.5E-05 43.1 5.9 59 196-257 275-334 (380)
408 PRK07688 thiamine/molybdopteri 84.4 2.9 6.4E-05 41.3 6.9 33 143-176 24-58 (339)
409 cd05292 LDH_2 A subgroup of L- 84.2 20 0.00043 34.8 12.6 103 145-257 2-116 (308)
410 PRK10458 DNA cytosine methylas 84.0 16 0.00035 37.7 12.4 44 143-187 88-131 (467)
411 cd05298 GH4_GlvA_pagL_like Gly 84.0 7.7 0.00017 39.8 10.0 39 145-184 2-47 (437)
412 cd05281 TDH Threonine dehydrog 84.0 12 0.00026 36.2 11.0 100 141-257 162-262 (341)
413 PRK08618 ornithine cyclodeamin 84.0 35 0.00077 33.3 14.3 114 98-225 85-201 (325)
414 PRK10669 putative cation:proto 83.9 7.1 0.00015 41.1 10.0 96 144-259 418-517 (558)
415 cd08286 FDH_like_ADH2 formalde 83.9 12 0.00027 36.0 11.1 98 141-257 165-266 (345)
416 PRK03659 glutathione-regulated 83.8 6.4 0.00014 41.9 9.7 96 144-259 401-500 (601)
417 TIGR00675 dcm DNA-methyltransf 83.7 3.1 6.8E-05 40.5 6.8 68 146-225 1-68 (315)
418 cd08261 Zn_ADH7 Alcohol dehydr 83.3 10 0.00022 36.5 10.2 98 141-256 158-257 (337)
419 cd08255 2-desacetyl-2-hydroxye 83.3 11 0.00023 35.0 10.1 94 141-257 96-190 (277)
420 COG1565 Uncharacterized conser 83.1 2.2 4.8E-05 42.3 5.4 50 140-189 75-132 (370)
421 PRK06141 ornithine cyclodeamin 82.9 48 0.001 32.2 15.6 113 98-225 83-198 (314)
422 KOG1098 Putative SAM-dependent 82.9 3.9 8.5E-05 43.2 7.2 102 141-257 43-158 (780)
423 PLN02819 lysine-ketoglutarate 82.7 14 0.00031 41.8 12.2 106 143-256 569-701 (1042)
424 COG0541 Ffh Signal recognition 82.7 6.4 0.00014 40.1 8.5 105 142-255 99-219 (451)
425 PTZ00082 L-lactate dehydrogena 82.6 16 0.00036 35.7 11.3 77 143-227 6-85 (321)
426 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.0 6.5 0.00014 41.0 8.7 104 142-259 4-122 (503)
427 PRK06223 malate dehydrogenase; 82.0 17 0.00037 34.9 11.2 106 144-257 3-119 (307)
428 COG1648 CysG Siroheme synthase 82.0 3.7 7.9E-05 37.8 6.1 101 135-260 4-106 (210)
429 PF06859 Bin3: Bicoid-interact 81.7 0.2 4.3E-06 41.2 -2.1 46 216-262 1-48 (110)
430 cd00757 ThiF_MoeB_HesA_family 81.7 3.8 8.2E-05 37.9 6.2 34 143-176 21-55 (228)
431 cd01491 Ube1_repeat1 Ubiquitin 81.6 4.3 9.4E-05 39.2 6.7 32 143-176 19-53 (286)
432 TIGR00692 tdh L-threonine 3-de 81.6 15 0.00033 35.4 10.8 100 141-257 160-261 (340)
433 TIGR02819 fdhA_non_GSH formald 81.4 14 0.0003 37.0 10.6 107 141-257 184-299 (393)
434 PF02719 Polysacc_synt_2: Poly 81.4 6 0.00013 38.3 7.6 76 146-225 1-86 (293)
435 COG1748 LYS9 Saccharopine dehy 81.3 17 0.00038 36.6 11.1 139 144-295 2-161 (389)
436 PRK08306 dipicolinate synthase 81.2 14 0.0003 35.8 10.1 91 142-259 151-243 (296)
437 PRK05396 tdh L-threonine 3-deh 81.1 12 0.00026 36.1 9.8 99 142-257 163-263 (341)
438 PRK06949 short chain dehydroge 80.9 31 0.00068 31.4 12.2 78 142-225 8-95 (258)
439 PF00072 Response_reg: Respons 80.9 9.5 0.00021 29.8 7.6 78 169-257 1-78 (112)
440 cd08243 quinone_oxidoreductase 80.9 20 0.00043 33.6 11.1 96 141-257 141-238 (320)
441 PRK09422 ethanol-active dehydr 80.6 21 0.00046 34.1 11.4 99 141-257 161-261 (338)
442 PRK07340 ornithine cyclodeamin 80.5 29 0.00063 33.6 12.2 73 141-225 123-197 (304)
443 TIGR01627 A_thal_3515 uncharac 80.5 13 0.00028 34.3 8.9 49 139-189 36-84 (225)
444 PRK06124 gluconate 5-dehydroge 80.4 20 0.00043 32.9 10.6 78 142-225 10-97 (256)
445 PRK08762 molybdopterin biosynt 80.2 3.9 8.4E-05 40.9 6.1 34 142-175 134-168 (376)
446 cd01483 E1_enzyme_family Super 80.2 7.2 0.00016 32.9 7.0 31 145-176 1-33 (143)
447 PRK15057 UDP-glucose 6-dehydro 80.1 37 0.00081 34.1 13.1 108 145-260 2-120 (388)
448 COG4017 Uncharacterized protei 80.1 3.4 7.5E-05 37.5 5.0 85 140-254 42-127 (254)
449 PRK07523 gluconate 5-dehydroge 79.5 28 0.00061 31.9 11.3 78 142-225 9-96 (255)
450 cd05213 NAD_bind_Glutamyl_tRNA 79.2 20 0.00044 34.7 10.7 41 142-184 177-221 (311)
451 PRK00258 aroE shikimate 5-dehy 79.2 41 0.00089 32.0 12.6 68 115-186 96-167 (278)
452 PRK09291 short chain dehydroge 78.8 22 0.00049 32.4 10.4 76 144-225 3-82 (257)
453 PRK10083 putative oxidoreducta 78.8 21 0.00045 34.3 10.6 99 141-257 159-259 (339)
454 PRK07454 short chain dehydroge 78.7 38 0.00082 30.6 11.9 77 142-224 5-91 (241)
455 cd08231 MDR_TM0436_like Hypoth 78.6 20 0.00043 34.9 10.5 99 142-257 177-280 (361)
456 PLN02702 L-idonate 5-dehydroge 78.5 15 0.00033 35.8 9.7 99 142-257 181-285 (364)
457 cd08240 6_hydroxyhexanoate_dh_ 78.4 18 0.00039 35.0 10.2 98 142-256 175-273 (350)
458 PRK09496 trkA potassium transp 78.3 20 0.00044 36.2 10.8 70 145-226 2-75 (453)
459 cd08263 Zn_ADH10 Alcohol dehyd 78.3 18 0.0004 35.3 10.2 100 141-257 186-287 (367)
460 cd08282 PFDH_like Pseudomonas 78.2 35 0.00077 33.5 12.3 107 141-255 175-283 (375)
461 PRK08267 short chain dehydroge 77.7 23 0.00049 32.6 10.2 74 144-225 2-86 (260)
462 PRK05600 thiamine biosynthesis 77.7 9 0.00019 38.3 7.8 34 142-175 40-74 (370)
463 PRK07102 short chain dehydroge 77.7 25 0.00054 31.9 10.3 75 144-224 2-84 (243)
464 cd05293 LDH_1 A subgroup of L- 77.6 58 0.0013 31.7 13.3 106 143-257 3-120 (312)
465 KOG1209 1-Acyl dihydroxyaceton 77.6 10 0.00022 35.2 7.4 80 141-226 5-91 (289)
466 TIGR03376 glycerol3P_DH glycer 77.5 31 0.00068 34.1 11.4 144 145-305 1-167 (342)
467 TIGR02354 thiF_fam2 thiamine b 77.4 22 0.00047 32.3 9.6 33 142-175 20-54 (200)
468 PRK15076 alpha-galactosidase; 77.2 20 0.00043 36.6 10.3 74 144-223 2-82 (431)
469 cd08245 CAD Cinnamyl alcohol d 77.2 32 0.0007 32.7 11.4 95 141-257 161-256 (330)
470 PRK07417 arogenate dehydrogena 77.2 11 0.00023 35.9 7.9 89 145-259 2-92 (279)
471 PRK12549 shikimate 5-dehydroge 77.2 34 0.00075 32.8 11.4 70 115-186 101-171 (284)
472 KOG0022 Alcohol dehydrogenase, 77.1 23 0.0005 34.8 9.9 101 141-256 191-293 (375)
473 cd01493 APPBP1_RUB Ubiquitin a 77.0 11 0.00024 38.5 8.3 32 143-176 20-54 (425)
474 PRK08213 gluconate 5-dehydroge 77.0 33 0.00071 31.5 11.0 77 143-225 12-98 (259)
475 TIGR02437 FadB fatty oxidation 77.0 11 0.00023 41.2 8.7 103 143-259 313-430 (714)
476 cd01488 Uba3_RUB Ubiquitin act 76.9 7.5 0.00016 37.6 6.7 31 145-177 1-34 (291)
477 cd00300 LDH_like L-lactate deh 76.7 25 0.00054 33.9 10.4 104 146-257 1-115 (300)
478 PRK12439 NAD(P)H-dependent gly 76.7 42 0.00092 32.9 12.2 144 141-304 5-160 (341)
479 cd05197 GH4_glycoside_hydrolas 76.7 12 0.00026 38.1 8.5 43 145-188 2-55 (425)
480 COG1086 Predicted nucleoside-d 76.2 15 0.00033 38.6 9.1 80 142-225 249-334 (588)
481 cd08297 CAD3 Cinnamyl alcohol 76.1 24 0.00052 33.9 10.2 99 141-257 164-265 (341)
482 PRK07533 enoyl-(acyl carrier p 76.0 45 0.00098 30.8 11.7 77 142-224 9-96 (258)
483 COG5379 BtaA S-adenosylmethion 76.0 5.5 0.00012 38.6 5.4 73 142-223 63-139 (414)
484 cd05297 GH4_alpha_glucosidase_ 75.8 5.7 0.00012 40.4 5.9 75 145-225 2-83 (423)
485 PRK14027 quinate/shikimate deh 75.6 50 0.0011 31.7 12.1 68 115-184 101-169 (283)
486 cd08290 ETR 2-enoyl thioester 75.3 15 0.00033 35.2 8.6 98 141-256 145-250 (341)
487 cd08279 Zn_ADH_class_III Class 75.2 22 0.00049 34.7 9.9 99 141-256 181-281 (363)
488 TIGR01963 PHB_DH 3-hydroxybuty 75.2 33 0.00071 31.1 10.4 75 144-225 2-87 (255)
489 TIGR02817 adh_fam_1 zinc-bindi 75.2 39 0.00085 32.2 11.4 96 143-256 149-246 (336)
490 PRK07576 short chain dehydroge 75.2 46 0.001 30.8 11.6 77 142-224 8-94 (264)
491 cd01485 E1-1_like Ubiquitin ac 75.1 13 0.00028 33.6 7.5 32 143-176 19-53 (198)
492 TIGR01408 Ube1 ubiquitin-activ 75.1 8.1 0.00018 43.7 7.3 32 143-176 24-58 (1008)
493 cd08265 Zn_ADH3 Alcohol dehydr 75.0 43 0.00092 33.1 11.9 101 141-257 202-307 (384)
494 cd08296 CAD_like Cinnamyl alco 74.9 29 0.00064 33.3 10.5 97 141-257 162-259 (333)
495 PRK12429 3-hydroxybutyrate deh 74.9 42 0.0009 30.5 11.1 77 143-225 4-90 (258)
496 PRK14851 hypothetical protein; 74.8 7 0.00015 42.3 6.5 35 143-177 43-78 (679)
497 COG0169 AroE Shikimate 5-dehyd 74.8 36 0.00078 32.8 10.8 74 115-188 98-172 (283)
498 PF03807 F420_oxidored: NADP o 74.7 14 0.00031 28.5 6.9 87 145-254 1-91 (96)
499 cd08287 FDH_like_ADH3 formalde 74.7 31 0.00066 33.2 10.6 100 141-257 167-268 (345)
500 cd08252 AL_MDR Arginate lyase 74.7 26 0.00057 33.3 10.1 97 143-257 150-248 (336)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=8.6e-63 Score=475.23 Aligned_cols=304 Identities=77% Similarity=1.349 Sum_probs=271.6
Q ss_pred cCccccccccccccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeE
Q 017607 39 SAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIV 118 (369)
Q Consensus 39 ~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~ 118 (369)
..|++...++..+++.||+|. .+.+++.+++++++++|++.+|+||+|.|+++..+|++|+|||.+
T Consensus 2 ~~~~~~~~~~~~~~~~w~~e~--------------~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~ 67 (308)
T PLN02366 2 AAPESEAKCHSTVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVI 67 (308)
T ss_pred CCCCCCccccchhhhceEeec--------------ccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEe
Confidence 467888899999999999997 445688999999999999999999999999999999999999999
Q ss_pred eecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCE
Q 017607 119 QLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRV 198 (369)
Q Consensus 119 q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 198 (369)
|++++|++.|||||+|+|++.|++|++||+||||+|++++++++++++.+|++||||++|++.||++|+..+.+++++|+
T Consensus 68 q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv 147 (308)
T PLN02366 68 QLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV 147 (308)
T ss_pred eecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce
Confidence 99999999999999999999999999999999999999999999988899999999999999999999877656789999
Q ss_pred EEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHC
Q 017607 199 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETF 278 (369)
Q Consensus 199 ~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F 278 (369)
+++++|+++++++.++++||+||+|+++|.+++..|++.+||+.++++|+|||++++|++++|...+.++.+.++++++|
T Consensus 148 ~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 148 NLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 99999999999865456899999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCCCCCCchhhhcccccCCCCCeeeCHHHHHHHhcCCHHHHHHhhcc
Q 017607 279 KGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 356 (369)
Q Consensus 279 ~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~~~~~l~~~ 356 (369)
+.++.++++.||+||+|.|||++||++.+..++.+|.+....++.......+|||||+++|+++|+||+|+++.|...
T Consensus 228 ~~~v~~~~~~vPsy~~g~w~f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~~ 305 (308)
T PLN02366 228 KGSVNYAWTTVPTYPSGVIGFVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVHRAAFCLPSFAKRELESL 305 (308)
T ss_pred CCceeEEEecCCCcCCCceEEEEEECCCccccccccccccchhhhhhcccCCCeEECHHHHHHHhcChHHHHHHHHhc
Confidence 558899999999999999999999997444444555443322110001124689999999999999999999999865
No 2
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-62 Score=454.24 Aligned_cols=329 Identities=47% Similarity=0.793 Sum_probs=303.3
Q ss_pred CCCccccccccCCccCCCCCCCccccchhcccccCccccccccccccccceeccccCCCccccccccCCCCCcccceeee
Q 017607 6 GKGLGCQKTMDGKESNKNGSAGAIPSCCLKARASAPELDAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLK 85 (369)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (369)
..++.|+.. +++++.+ .+|+.+++........+|+.+..+||+|.+.. .++|||++++++
T Consensus 5 ~~~l~~~~~--~~ad~~~-------~~~~~~~~~~q~~~~s~h~~i~~GwF~e~~~~-----------~~i~pg~a~tLk 64 (337)
T KOG1562|consen 5 TILLDFTLD--AKADEEA-------LRNELEQLFPQLELESSHPSIENGWFAEIHNK-----------KDIWPGQALTLK 64 (337)
T ss_pred eeeeeeecC--CcCCcch-------hhhhHhhhchhhhhccccCcccCCeEeeecCC-----------CCCCCCceeEEE
Confidence 344544443 5555554 78999998888888899999999999998654 458999999999
Q ss_pred eeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC
Q 017607 86 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS 165 (369)
Q Consensus 86 ~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~ 165 (369)
|+++++.++|.||++.|+++..||++|++||.+|++++||+.|+||++|+|+++|++|++||+||+|+|+..|++.+|..
T Consensus 65 Ve~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ 144 (337)
T KOG1562|consen 65 VEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKS 144 (337)
T ss_pred eeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHH
Q 017607 166 VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK 245 (369)
Q Consensus 166 ~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~ 245 (369)
+++++.+|||..+++.+++|+|.+.+++++++|.++.||+..|++..+.++|||||+|+++|.+|+..+|.+.+|+.+.+
T Consensus 145 ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~ 224 (337)
T KOG1562|consen 145 VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLD 224 (337)
T ss_pred ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988778999999999999999999999999999999
Q ss_pred hccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCCCCCCchhhhcccc
Q 017607 246 ALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGAD 325 (369)
Q Consensus 246 ~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~~p~~~~~~~~~~~ 325 (369)
+||+||++++|+++.|.+.+.++++.+.++.+|+ .+.|.++.+||||+|.+||++|||..+..++..|.++++..+...
T Consensus 225 aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~-~t~ya~ttvPTypsg~igf~l~s~~~~~~~~~~p~n~i~~~e~~~ 303 (337)
T KOG1562|consen 225 ALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFD-LTAYAITTVPTYPSGRIGFMLCSKLKPDGKYKTPGNPITCKEQLS 303 (337)
T ss_pred hhCCCcEEEEecceehHHHHHHHHHHHhHHHhcC-ccceeeecCCCCccceEEEEEecccCCCCCccCCCCccCHHHHHh
Confidence 9999999999999999999999999999999999 889999999999999999999998778899999999888654333
Q ss_pred cCCCCCeeeCHHHHHHHhcCCHHHHHHhhc
Q 017607 326 KHKRELRFYNSEIHSAAFALPAFLKREVSV 355 (369)
Q Consensus 326 ~~~~~~~yy~~~~h~a~f~lP~~~~~~l~~ 355 (369)
....+|+|||.++|+|+|+||.|+++.+..
T Consensus 304 l~~~~L~yyn~e~h~aaf~lPsf~~k~~~~ 333 (337)
T KOG1562|consen 304 LYEEQLLYYNVEFHSAAFVLPSFAEKWLFY 333 (337)
T ss_pred hhhhhhccCCchhceeeeechHHHHHHHHH
Confidence 334578999999999999999999998864
No 3
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=6.4e-60 Score=443.73 Aligned_cols=252 Identities=21% Similarity=0.284 Sum_probs=222.5
Q ss_pred CcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHH
Q 017607 77 WPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGV 156 (369)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~ 156 (369)
+++.+++++++++|++++|+||+|+|+++..||++|+|| .+|+++.|||+|||||+|+|++.|++|++||+||||+|++
T Consensus 8 ~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~ 86 (262)
T PRK00536 8 TPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLEL 86 (262)
T ss_pred CCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHH
Confidence 378899999999999999999999999999999999999 6667999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCcccccc
Q 017607 157 LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE 236 (369)
Q Consensus 157 ~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~ 236 (369)
+||++||+ .+|++||||++|+++||+++|.++.+++|||++++. ++.+...++||+||+|++ ++
T Consensus 87 ~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~---------~~ 150 (262)
T PRK00536 87 AHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE---------PD 150 (262)
T ss_pred HHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC---------CC
Confidence 99999996 499999999999999999999998889999999997 233333468999999974 45
Q ss_pred HHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCCCCCC
Q 017607 237 KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPIN 316 (369)
Q Consensus 237 ~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~~p~~ 316 (369)
++||+.++++|+|||++++|++|++++.+.++.+.++++++|+ .+.+|.++||+| |.|||++||++..|....
T Consensus 151 ~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~-~v~~y~~~vp~~--g~wgf~~aS~~~~p~~~~---- 223 (262)
T PRK00536 151 IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS-IAMPFVAPLRIL--SNKGYIYASFKTHPLKDL---- 223 (262)
T ss_pred hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC-ceEEEEecCCCc--chhhhheecCCCCCccch----
Confidence 7899999999999999999999999999999999999999999 788889999999 799999999974433210
Q ss_pred chhhhcccccCCCCCeeeCHHHHHHHhcCCHHHHHHhhcc
Q 017607 317 PIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVSVL 356 (369)
Q Consensus 317 ~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~~~~~l~~~ 356 (369)
. .++. .....|||||+++|+|+|+||+|++++|+..
T Consensus 224 --~-~~~~-~~~~~lryy~~~~h~a~F~lP~~v~~~l~~~ 259 (262)
T PRK00536 224 --M-LQKI-EALKSVRYYNEDIHRAAFALPKNLQEVFKDN 259 (262)
T ss_pred --h-hhhh-cccCCceeeCHHHHHHHhcCcHHHHHHHHHh
Confidence 0 1111 1113489999999999999999999999754
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=2.5e-56 Score=427.21 Aligned_cols=271 Identities=42% Similarity=0.761 Sum_probs=241.6
Q ss_pred cccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHH
Q 017607 78 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL 157 (369)
Q Consensus 78 ~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~ 157 (369)
++.++.+++++++++++|+||+|.|+++..+|++|+|||.+|++++|++.||||++|+|++.|++|++||+||||+|.++
T Consensus 12 ~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~ 91 (283)
T PRK00811 12 DNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTL 91 (283)
T ss_pred CccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCC-CCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCcccccc
Q 017607 158 REISRHDSVELIDICEIDKMVIDVSKKYFPELAVG-FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVE 236 (369)
Q Consensus 158 ~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~ 236 (369)
+++++++++.+|++||||+++++.|+++|+..+.+ ++++|++++++|++++++.. +++||+||+|+++|.+++..+++
T Consensus 92 ~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~~dp~~~~~~l~t 170 (283)
T PRK00811 92 REVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-ENSFDVIIVDSTDPVGPAEGLFT 170 (283)
T ss_pred HHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-CCcccEEEECCCCCCCchhhhhH
Confidence 99999977889999999999999999999876544 47899999999999999763 57899999999999988889999
Q ss_pred HHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCCCCCC
Q 017607 237 KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPIN 316 (369)
Q Consensus 237 ~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~~p~~ 316 (369)
.+||+.++++|+|||++++|+++++...+.+..+.++++++|+ .+.++...+|+||+|.|+|++||++.++.. +|.+
T Consensus 171 ~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~~as~~~~~~~--~~~~ 247 (283)
T PRK00811 171 KEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTFASKNDDLKF--LPLD 247 (283)
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeEEeecCccccc--Cccc
Confidence 9999999999999999999999998888899999999999999 688889999999999999999998643321 2222
Q ss_pred chhhhcccccCCCCCeeeCHHHHHHHhcCCHHHHHHhh
Q 017607 317 PIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 354 (369)
Q Consensus 317 ~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~~~~~l~ 354 (369)
.+.. +......++||||+++|+|+|+||+|+|++|.
T Consensus 248 ~~~~--~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 248 VIEA--RFAERGIKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred cchh--hHhhccCCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 1111 11112236999999999999999999999874
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-56 Score=422.65 Aligned_cols=280 Identities=45% Similarity=0.779 Sum_probs=250.9
Q ss_pred cccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHH
Q 017607 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (369)
Q Consensus 52 ~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~ 131 (369)
...||+|..+ ++.+..+++++++++++|+||+|.++++..+|++|++||.+|+++.|++.||||
T Consensus 2 ~~~w~~e~~~----------------~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEm 65 (282)
T COG0421 2 ADMWFTELYD----------------PGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEM 65 (282)
T ss_pred Cccceeeeec----------------ccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHH
Confidence 3468888743 678899999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh
Q 017607 132 IAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 211 (369)
Q Consensus 132 l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~ 211 (369)
++|+|+..|++|++||+||+|+|+++|++++|.+++++++||||++|+++||++|+..+.+..|||++++++|+.+|+++
T Consensus 66 l~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~ 145 (282)
T COG0421 66 LAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD 145 (282)
T ss_pred HHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999997665589999999999999998
Q ss_pred CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEee
Q 017607 212 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPT 291 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~ 291 (369)
.+ ++||+||+|+++|.+|+..||+.+||+.++++|+++|++++|++++|++.+.+..+.+.++.+|+ .+.++...+|+
T Consensus 146 ~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~-~~~~~~~~ipt 223 (282)
T COG0421 146 CE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS-IVPPYVAPIPT 223 (282)
T ss_pred CC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc-ccccceeccce
Confidence 75 48999999999999999999999999999999999999999999999999999999999999999 77888899999
Q ss_pred ccCCcEEEEEeecCCCCCCCCCCCCchhhhcccccCCCCCeeeCHHHHHHHhcCCHHHHHHhh
Q 017607 292 YPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 354 (369)
Q Consensus 292 ~p~g~w~f~~ask~~~~~~~~~p~~~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~~~~~l~ 354 (369)
|++|.|+|+++|.+.. +|+.+++...........++|||+++|.++|+||+|++++++
T Consensus 224 ~~~g~~~f~~~s~~~~-----~~~~~~~~~~~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 224 YPSGFWGFIVASFNKA-----HPLKSLDALQARALALLTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred ecCCceEEEEeecCCC-----CcccchhHHHHHHhhhhhhccCcHHHhhhhhcCCcchhhhcc
Confidence 9999999999995421 223333222111112245699999999999999999999875
No 6
>PLN02823 spermine synthase
Probab=100.00 E-value=8.1e-53 Score=409.84 Aligned_cols=273 Identities=32% Similarity=0.563 Sum_probs=237.4
Q ss_pred cccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHH
Q 017607 78 PGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL 157 (369)
Q Consensus 78 ~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~ 157 (369)
++..+.+.++++|++.+|+||+|+|+++..+|++|++||.+|+++.|++.|||+|+|++++.|++|++||+||+|+|+++
T Consensus 39 ~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~ 118 (336)
T PLN02823 39 DDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTA 118 (336)
T ss_pred CCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCC--CCccccc
Q 017607 158 REISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV--GPAQELV 235 (369)
Q Consensus 158 ~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~--~~~~~L~ 235 (369)
++++++.+..+|++||||++++++||++|+..+.+++++|++++++|+++|++.. +++||+||+|+++|. +++..|+
T Consensus 119 re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi~D~~dp~~~~~~~~Ly 197 (336)
T PLN02823 119 REVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVIIGDLADPVEGGPCYQLY 197 (336)
T ss_pred HHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEEecCCCccccCcchhhc
Confidence 9999998889999999999999999999987655678999999999999999764 578999999999986 4567899
Q ss_pred cHHHHH-HHHHhccCCceEEeccccc--chhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCC
Q 017607 236 EKPFFD-TIAKALRPGGVLCNMAESM--WLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFV 312 (369)
Q Consensus 236 ~~ef~~-~~~~~LkpgGilv~~~~s~--~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~ 312 (369)
+.+||+ .++++|+|||++++|+.++ +...+.+..+.++++++|+ .|..+.+.+|+|++ .|||++||+.. +.++.
T Consensus 198 t~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~-~w~f~~aS~~~-~~~~~ 274 (336)
T PLN02823 198 TKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK-YVVPYTAHVPSFAD-TWGWVMASDHP-FADLS 274 (336)
T ss_pred cHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCC-ceEEEEEeCCc-cccCC
Confidence 999999 9999999999999998763 4456788999999999999 67888899999986 59999999863 22221
Q ss_pred CCCCchhhhcccc-cCCCCCeeeCHHHHHHHhcCCHHHHHHhhccCC
Q 017607 313 NPINPIEKLEGAD-KHKRELRFYNSEIHSAAFALPAFLKREVSVLGD 358 (369)
Q Consensus 313 ~p~~~~~~~~~~~-~~~~~~~yy~~~~h~a~f~lP~~~~~~l~~~~~ 358 (369)
| ..+.. +.. +...++||||+++|+++|+||+++++.|.....
T Consensus 275 -~-~~~~~--~~~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~ 317 (336)
T PLN02823 275 -A-EELDS--RIKERIDGELKYLDGETFSSAFALNKTVRQALANETH 317 (336)
T ss_pred -h-hHHHH--hhhhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCC
Confidence 1 11211 111 112468999999999999999999999875543
No 7
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=9.5e-51 Score=386.41 Aligned_cols=264 Identities=45% Similarity=0.781 Sum_probs=235.1
Q ss_pred CCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccH
Q 017607 76 MWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGG 155 (369)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~ 155 (369)
++|+.+++++++++|++++|+||+|.|+++..+|++|+|||.+|+++.+++.||||++|++++.|++|++||+||||+|.
T Consensus 6 ~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~ 85 (270)
T TIGR00417 6 HDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGG 85 (270)
T ss_pred cCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchH
Confidence 44889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccc
Q 017607 156 VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELV 235 (369)
Q Consensus 156 ~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~ 235 (369)
++++++++.+..++++||+|+++++.|+++++..+..+++++++++.+|++++++.. +++||+||+|.++|.++...++
T Consensus 86 ~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~~~~~~l~ 164 (270)
T TIGR00417 86 VLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPVGPAETLF 164 (270)
T ss_pred HHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCCCcccchh
Confidence 999999997778999999999999999999987665567899999999999999765 4689999999999988888899
Q ss_pred cHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecC-CCCCCCCCC
Q 017607 236 EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE-GPHVDFVNP 314 (369)
Q Consensus 236 ~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~-~~~~~~~~p 314 (369)
+.+|++.++++|+|||++++++.+++.....+..+.++++++|+ .+.++.+.+|+||+|.|+|++||++ ..|... +
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~as~~~~~~~~~--~ 241 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIGSKNKYDPLEV--E 241 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEEECCCCCCCCc--c
Confidence 99999999999999999999999999888999999999999999 6888899999999999999999983 222221 1
Q ss_pred CCchhhhcccccCCCCCeeeCHHHHHHHhcCCHH
Q 017607 315 INPIEKLEGADKHKRELRFYNSEIHSAAFALPAF 348 (369)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~ 348 (369)
...+.+ ....++||||+++|+++|+||+|
T Consensus 242 ~~~~~~-----~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 242 DRRISE-----FEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred hhhhhh-----cccCCCeEECHHHHHHhcCCCCC
Confidence 111110 11235899999999999999986
No 8
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=1.2e-49 Score=373.55 Aligned_cols=242 Identities=45% Similarity=0.768 Sum_probs=222.7
Q ss_pred cceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHH
Q 017607 54 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIA 133 (369)
Q Consensus 54 ~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~ 133 (369)
.||+|..+ +++|+...++++++++++++|+||+|.|++++.||++++|||.+|++++|++.|||||+
T Consensus 1 ~w~~e~~~-------------~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~ 67 (246)
T PF01564_consen 1 MWFTEYYS-------------QFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLV 67 (246)
T ss_dssp TEEEEEET--------------TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHH
T ss_pred CeEEEEec-------------cCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHh
Confidence 49999843 35689999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC
Q 017607 134 HLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 134 ~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~ 213 (369)
|+|++.|++|++||+||+|+|+++++++++++.++|++||||+.|+++|+++|+..+.+++++|++++++||+.|+++..
T Consensus 68 h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 68 HPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 99999999999999999999999999999998899999999999999999999987666789999999999999998874
Q ss_pred CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeecc
Q 017607 214 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYP 293 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p 293 (369)
+++||+||+|+++|.+++..||+.+||+.++++|+|||++++|+.+++.....++.+.++++++|+ .+.++.+.+|+|+
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~ 226 (246)
T PF01564_consen 148 EEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYG 226 (246)
T ss_dssp ST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSC
T ss_pred CCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeec
Confidence 338999999999999988889999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCcEEEEEeecCCCCC
Q 017607 294 SGIIGFLICSTEGPHV 309 (369)
Q Consensus 294 ~g~w~f~~ask~~~~~ 309 (369)
++.|+|++||+..+.+
T Consensus 227 ~~~~~~~~~s~~~~~~ 242 (246)
T PF01564_consen 227 SGWWSFASASKDINLV 242 (246)
T ss_dssp SSEEEEEEEESSTTT-
T ss_pred ccceeEEEEeCCCCcc
Confidence 9999999999986443
No 9
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=3.7e-44 Score=369.22 Aligned_cols=255 Identities=26% Similarity=0.468 Sum_probs=222.4
Q ss_pred cceeeeeeeEEEeeeCCCceEEEEEecC-ce--eEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHH
Q 017607 80 EAHSLKVKEILFKGKSEYQEVLVFESLA-YG--KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGV 156 (369)
Q Consensus 80 ~~~~~~~~~~l~~~~s~~q~I~v~~~~~-~G--~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~ 156 (369)
....+..++++++++|+||+|.|+++.. +| +.|++||.+|+++.|++.|||+++|++++.|++|++|||||||+|.+
T Consensus 232 ~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~ 311 (521)
T PRK03612 232 AEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLA 311 (521)
T ss_pred HHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHH
Confidence 3455677899999999999999999876 46 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCHHHHHHHHh--hchhhcC-CCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCC-cc
Q 017607 157 LREISRHDSVELIDICEIDKMVIDVSKK--YFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQ 232 (369)
Q Consensus 157 ~~~l~k~~~~~~V~~VEid~~vi~~ar~--~~~~~~~-~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~-~~ 232 (369)
++++++++++++|++||||+++++.+|+ +++..+. .+++||++++++|++++++.. +++||+|++|.++|..+ ..
T Consensus 312 ~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~ 390 (521)
T PRK03612 312 LREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALG 390 (521)
T ss_pred HHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchh
Confidence 9999999767899999999999999999 4555433 467899999999999999765 46899999999988765 36
Q ss_pred ccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHH-CCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCC
Q 017607 233 ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDF 311 (369)
Q Consensus 233 ~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~-F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~ 311 (369)
.+++.+||+.++++|+|||++++|+.+++...+.+..+.++++++ | .+.++..++|+| |.|||++|||+.++...
T Consensus 391 ~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~~~~~~~~ 466 (521)
T PRK03612 391 KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGAGARPPLA 466 (521)
T ss_pred ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeCCCCcccc
Confidence 799999999999999999999999999999889999999999999 7 467778999999 79999999986432211
Q ss_pred CCCCCchhhhcccccCCCCCeeeCHHHHHHHhcCCHHHH
Q 017607 312 VNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 350 (369)
Q Consensus 312 ~~p~~~~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~~~ 350 (369)
. .+ ....++||||+++|+++|+||+|++
T Consensus 467 -------~-~~---~~~~~~~~y~~~~h~~~f~lp~~~~ 494 (521)
T PRK03612 467 -------V-PT---ELPVPLRFLDPALLAAAFVFPKDMR 494 (521)
T ss_pred -------c-ch---hcccCCcccCHHHHHHHhCCChhhh
Confidence 0 00 1235799999999999999999999
No 10
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=2.9e-43 Score=341.84 Aligned_cols=219 Identities=28% Similarity=0.410 Sum_probs=197.6
Q ss_pred eeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC
Q 017607 86 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS 165 (369)
Q Consensus 86 ~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~ 165 (369)
+.++|++++|+||+|.|+++..| .|+|||.+|+++.||++|||||+|+++..|++|++||+||||+|.++++++++++
T Consensus 96 ~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~ 173 (374)
T PRK01581 96 EHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET 173 (374)
T ss_pred ccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC
Confidence 55899999999999999999866 6999999999999999999999999999999999999999999999999999988
Q ss_pred CcEEEEEECCHHHHHHHHhh--chhhcC-CCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCC-CccccccHHHHH
Q 017607 166 VELIDICEIDKMVIDVSKKY--FPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG-PAQELVEKPFFD 241 (369)
Q Consensus 166 ~~~V~~VEid~~vi~~ar~~--~~~~~~-~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~-~~~~L~~~ef~~ 241 (369)
+++|++||||++|+++|+++ ++.++. +++++|++++++|+++|++.. .++||+||+|+++|.. +...+++.+||+
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~ 252 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFA 252 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHHH
Confidence 89999999999999999984 343333 467899999999999999765 4689999999999875 367899999999
Q ss_pred HHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCC
Q 017607 242 TIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHV 309 (369)
Q Consensus 242 ~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~ 309 (369)
.++++|+|||++++|+.+++..+..++.+.++++++|. .+..|.+.+|+|++ .|||++||+....+
T Consensus 253 ~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~-~WgF~~as~~~~~~ 318 (374)
T PRK01581 253 RIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL-TVKSYHTIVPSFGT-DWGFHIAANSAYVL 318 (374)
T ss_pred HHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC-ceEEEEEecCCCCC-ceEEEEEeCCcccc
Confidence 99999999999999999999888888999999999999 67888899999965 59999999864433
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=5.1e-42 Score=325.84 Aligned_cols=250 Identities=29% Similarity=0.462 Sum_probs=220.2
Q ss_pred eeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHH
Q 017607 82 HSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREIS 161 (369)
Q Consensus 82 ~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~ 161 (369)
+.+..+++||..+|+||+|.|.+.. ....|++||..|++.+||..|||.++++++...+..++||++|||+|..+|+++
T Consensus 230 qqlygdeIIh~~qspYQ~iVvTr~g-~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRell 308 (508)
T COG4262 230 QQLYGDEIIHAIQSPYQRIVVTRRG-DDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELL 308 (508)
T ss_pred HHhhcCceeeeccCccceEEEEEec-CceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHH
Confidence 3455688999999999999999865 346899999999999999999999999999988889999999999999999999
Q ss_pred hcCCCcEEEEEECCHHHHHHHHhh--chhhc-CCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCC-ccccccH
Q 017607 162 RHDSVELIDICEIDKMVIDVSKKY--FPELA-VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-AQELVEK 237 (369)
Q Consensus 162 k~~~~~~V~~VEid~~vi~~ar~~--~~~~~-~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~-~~~L~~~ 237 (369)
|++..++|+.||+||+|+++++++ +...+ .+++|||++++.+|+++|++... +.||+||+|..||..+ ...+|+.
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~-~~fD~vIVDl~DP~tps~~rlYS~ 387 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA-DMFDVVIVDLPDPSTPSIGRLYSV 387 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc-ccccEEEEeCCCCCCcchhhhhhH
Confidence 999899999999999999999954 44443 36899999999999999998764 6899999999999876 5789999
Q ss_pred HHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecCCCCCCCCCCCCc
Q 017607 238 PFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINP 317 (369)
Q Consensus 238 ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~~~~~~~~~p~~~ 317 (369)
|||..++++|+++|++++|++++++.++.++++.+++++.-- .+-.|+.+|||| |.|||++|++. +.++..|.
T Consensus 388 eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~-~~~Pyhv~VPTF--GeWGf~l~~~~--~~~fep~~-- 460 (508)
T COG4262 388 EFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY-RVWPYHVHVPTF--GEWGFILAAPG--DADFEPPT-- 460 (508)
T ss_pred HHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc-eeeeeEEecCcc--cccceeecccc--cCCCCCCc--
Confidence 999999999999999999999999999999999999999843 456677999999 89999999986 45554322
Q ss_pred hhhhcccccCCCCCeeeCHHHHHHHhcCCHH
Q 017607 318 IEKLEGADKHKRELRFYNSEIHSAAFALPAF 348 (369)
Q Consensus 318 ~~~~~~~~~~~~~~~yy~~~~h~a~f~lP~~ 348 (369)
+...+++|.|.|+..|+|++.+.
T Consensus 461 --------e~~~~t~FLd~e~~~a~~~fg~d 483 (508)
T COG4262 461 --------EYRPPTRFLDAEVLHAAFVFGPD 483 (508)
T ss_pred --------ccCcccchhhHHHHHHHHhcCCC
Confidence 12358999999999999998765
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.92 E-value=2.5e-23 Score=197.25 Aligned_cols=200 Identities=25% Similarity=0.342 Sum_probs=155.7
Q ss_pred eeeCCCceEEEEEecCceeEEEEcC-eEeec----cc--chhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcC
Q 017607 92 KGKSEYQEVLVFESLAYGKVLVLDG-IVQLT----EK--DECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD 164 (369)
Q Consensus 92 ~~~s~~q~I~v~~~~~~G~~l~lDg-~~q~~----~~--de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~ 164 (369)
..++.|+.|.|+|.. -.+.|.+|+ ..|+. ++ ..+.|+++|... +..+++|++||+||||+|.+++.++++.
T Consensus 11 ~~~~~~~~i~v~e~~-~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~-l~~~~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 11 PAKAGFPEVGVSEEG-GVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGF-LLFNPRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred cccccCCCcEEEecC-CEEEEEECCCcceeeeecCCcccccCHHHHHHHHH-HhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence 356789999999987 458899988 46653 23 345788866432 2334678999999999999999999987
Q ss_pred CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHH
Q 017607 165 SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIA 244 (369)
Q Consensus 165 ~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~ 244 (369)
+..+|++||||+++++.|+++|.... .+++++++++|+.+++... .++||+|++|.++...++..+.+.+|++.++
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~ 164 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDDCR 164 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHHHH
Confidence 78899999999999999999986431 2579999999999999765 3689999999887766677788999999999
Q ss_pred HhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeecC
Q 017607 245 KALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTE 305 (369)
Q Consensus 245 ~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask~ 305 (369)
++|+|||+++++. |.....+..++++++++|++.+ + .+|....|++ .++|++.
T Consensus 165 ~~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N~-v~~a~~~ 217 (262)
T PRK04457 165 NALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGNV-AVFAFKS 217 (262)
T ss_pred HhcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCccE-EEEEECC
Confidence 9999999999864 3334456788899999998432 2 2355555554 4556664
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=134.65 Aligned_cols=166 Identities=21% Similarity=0.285 Sum_probs=137.0
Q ss_pred eEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh
Q 017607 110 KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189 (369)
Q Consensus 110 ~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~ 189 (369)
..+.+||.-+........+...++-+.+.......+|||.++|-|.++.+.++.. ..+|..||.||.|+++|+-|- +
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNP--w 178 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNP--W 178 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCC--C
Confidence 5789999999877777777888887777655678899999999999999999985 348999999999999987652 2
Q ss_pred cCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccccc---chhhhH
Q 017607 190 AVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM---WLHTHL 266 (369)
Q Consensus 190 ~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~---~~~~~~ 266 (369)
+..+.+.+++++.+|+.+++++..+++||+||.|.+- ...+.+||+.+||++++|+|+|||.+.-.+++| +...+.
T Consensus 179 Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR-fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~ 257 (287)
T COG2521 179 SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR-FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDL 257 (287)
T ss_pred CccccccccEEecccHHHHHhcCCccccceEeeCCCc-cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCCh
Confidence 2233455899999999999999988899999988653 345668999999999999999999998776665 345677
Q ss_pred HHHHHHHHHHH-CC
Q 017607 267 IEDMISICRET-FK 279 (369)
Q Consensus 267 ~~~i~~~l~~~-F~ 279 (369)
.+.+.+.++++ |.
T Consensus 258 ~~gVa~RLr~vGF~ 271 (287)
T COG2521 258 PKGVAERLRRVGFE 271 (287)
T ss_pred hHHHHHHHHhcCce
Confidence 88898999887 55
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=3e-15 Score=122.60 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=83.8
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
..+|||||||+|..+.++++..+..+|++||+|+++++.+++++..... .++++++.+|+ .+.... .++||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~i~~~~~d~-~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL---SDRITFVQGDA-EFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT---TTTEEEEESCC-HGGTTT-SSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEECcc-ccCccc-CCCCCEEEE
Confidence 4689999999999999999965578999999999999999999844322 57999999999 433333 357999998
Q ss_pred cC-CCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 223 DS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 223 D~-~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.. ........ -...++++.+++.|+|||++++.
T Consensus 77 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 77 SGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccccccch-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 76 22111111 12357899999999999999974
No 15
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.60 E-value=1.6e-15 Score=145.45 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=140.4
Q ss_pred cccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEe---eeCCCceEEEEEecCceeEEEEcCeEeecccchh
Q 017607 50 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFK---GKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDEC 126 (369)
Q Consensus 50 ~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~ 126 (369)
....+|+..+..+++|+.++.+.+.++.+.+...+. +.+.+ ..-|.|+|...... +|..+.++..+.+..++..
T Consensus 30 ~~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~rr~~~~~Pl~yi~g~~~f-~g~~f~v~~~vlipr~~te 106 (284)
T TIGR03533 30 WDEAVYLVLHALHLPLDILEPFLDARLTPSEKERIL--ELIERRIEERIPVAYLTNEAWF-AGLEFYVDERVLIPRSPIA 106 (284)
T ss_pred HHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHH--HHHHHHHhCCCcHHHHcCCCee-cCcEEEECCCCccCCCchH
Confidence 346679999988899998888888888776554432 22222 24589999888765 6888888877777666532
Q ss_pred HH-HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 127 AY-QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 127 ~Y-~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
.. .+.+... .....+.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|++++...+. ..+++++.+|+
T Consensus 107 ~lv~~~l~~~--~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~---~~~i~~~~~D~ 181 (284)
T TIGR03533 107 ELIEDGFAPW--LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL---EDRVTLIQSDL 181 (284)
T ss_pred HHHHHHHHHH--hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEECch
Confidence 21 2222211 111345799999999999999999887677999999999999999999875522 25799999998
Q ss_pred HHHHhhCCCCCccEEEEcCCCCCC-------------Cccc--------cccHHHHHHHHHhccCCceEEeccc
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPVG-------------PAQE--------LVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~~-------------~~~~--------L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
.+.+ ++++||+|++|.+--.. |... -+.+.+++.+.+.|+|||.+++..+
T Consensus 182 ~~~~---~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 182 FAAL---PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred hhcc---CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7654 23579999987542110 0000 1235678899999999999998654
No 16
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.58 E-value=5.6e-15 Score=147.04 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=140.0
Q ss_pred cccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHH
Q 017607 50 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129 (369)
Q Consensus 50 ~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~ 129 (369)
....+|+.++..+++|..++.+.+.++.+.+...+..--......-|.|+|...... +|..+.++-.+.+++++.....
T Consensus 164 ~~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F-~G~~f~V~p~vLIPRpeTE~LV 242 (423)
T PRK14966 164 KNEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREF-YGRRFAVNPNVLIPRPETEHLV 242 (423)
T ss_pred HHHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeee-cCcEEEeCCCccCCCccHHHHH
Confidence 335678888888999999999999988777554442111112245699999999765 8888888877777777743333
Q ss_pred HHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH
Q 017607 130 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 209 (369)
Q Consensus 130 e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l 209 (369)
+.+ +...++..+|||||||+|.++..+++..+..+|+++|+|+.+++.|+++.... ..+++++.+|..+..
T Consensus 243 e~a----L~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 243 EAV----LARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-----GARVEFAHGSWFDTD 313 (423)
T ss_pred HHh----hhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCcEEEEEcchhccc
Confidence 322 22223456999999999999999998766789999999999999999998654 237999999986542
Q ss_pred hhCCCCCccEEEEcCCCCC-C------------Ccccc--------ccHHHHHHHHHhccCCceEEecc
Q 017607 210 RQVPRGKYDAIIVDSSDPV-G------------PAQEL--------VEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~-~------------~~~~L--------~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.. ..++||+|+++.+--. . |...| +.+.+++.+.+.|+|||.+++..
T Consensus 314 l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 314 MP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11 1357999998764210 0 00011 23467777788999999988644
No 17
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=2.9e-14 Score=138.27 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=153.9
Q ss_pred cccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEe---eeCCCceEEEEEecCceeEEEEcCeEeecccchh
Q 017607 50 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFK---GKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDEC 126 (369)
Q Consensus 50 ~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~ 126 (369)
....+|+..+..+++|+.++.+.+.++.+.+...+. +.+.+ ..-|.|+|...... +|..+.++..+.++.++..
T Consensus 42 ~~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~--~~~~rr~~~~~Pl~yi~g~~~F-~g~~f~v~~~vlipr~~te 118 (307)
T PRK11805 42 WDEAVQLVLHALHLPLDIPEPFLDARLTPSEKARIL--ELIERRINERIPAAYLTNEAWF-CGLEFYVDERVLVPRSPIA 118 (307)
T ss_pred HHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHH--HHHHHHHHCCccHHHHcCcceE-cCcEEEECCCCcCCCCchH
Confidence 446678999988899998888888888776554432 21221 24699999888765 6888888877777666532
Q ss_pred HH-HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 127 AY-QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 127 ~Y-~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
.. ...+... .....+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+. ..+++++.+|+
T Consensus 119 ~lv~~~l~~~--~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l---~~~i~~~~~D~ 193 (307)
T PRK11805 119 ELIEDGFAPW--LEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL---EDRVTLIESDL 193 (307)
T ss_pred HHHHHHHHHH--hccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCcEEEEECch
Confidence 22 1122211 111123789999999999999999887778999999999999999999876532 24799999998
Q ss_pred HHHHhhCCCCCccEEEEcCCCCC-------------CCccc--------cccHHHHHHHHHhccCCceEEecccccchhh
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPV-------------GPAQE--------LVEKPFFDTIAKALRPGGVLCNMAESMWLHT 264 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~-------------~~~~~--------L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~ 264 (369)
.+.+. +++||+|+++.+--. .|... -+...+++.+.+.|+|||.+++..... .
T Consensus 194 ~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~- 267 (307)
T PRK11805 194 FAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--R- 267 (307)
T ss_pred hhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--H-
Confidence 77652 357999998753210 00000 123578899999999999999855421 1
Q ss_pred hHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEEe
Q 017607 265 HLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLIC 302 (369)
Q Consensus 265 ~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~a 302 (369)
. .+++.|+ ...+.| ....+.|.|.|++.
T Consensus 268 ---~----~~~~~~~-~~~~~~--~~~~~~~~~~~~~~ 295 (307)
T PRK11805 268 ---V----HLEEAYP-DVPFTW--LEFENGGDGVFLLT 295 (307)
T ss_pred ---H----HHHHHHh-hCCCEE--EEecCCCceEEEEE
Confidence 1 2344454 233334 33345577766654
No 18
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.54 E-value=6.6e-15 Score=151.71 Aligned_cols=198 Identities=12% Similarity=0.123 Sum_probs=143.8
Q ss_pred ccccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHH
Q 017607 49 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAY 128 (369)
Q Consensus 49 ~~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y 128 (369)
+...++|+..+..+++++.++.+.+.++.+.+...+..--......-|.|+|.....+ +|.-+.+|-.+.+++++
T Consensus 24 ~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F-~g~~f~V~~~VLIPRpe---- 98 (506)
T PRK01544 24 PQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEF-YSREFIVNKHVLIPRSD---- 98 (506)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEE-cCcEEEeCCCcccCCCc----
Confidence 3446679999999999999999998888776544432111112245699999998776 89999999999999998
Q ss_pred HHHHHhccccC--------------------------CCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHH
Q 017607 129 QEMIAHLPLCS--------------------------IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVS 182 (369)
Q Consensus 129 ~e~l~~~~l~~--------------------------~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~a 182 (369)
+|.|+...+.. ..++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|
T Consensus 99 TE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A 178 (506)
T PRK01544 99 TEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVA 178 (506)
T ss_pred HHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 44444432211 1134689999999999999998876678999999999999999
Q ss_pred HhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCC--------------Ccccc--------ccHHHH
Q 017607 183 KKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG--------------PAQEL--------VEKPFF 240 (369)
Q Consensus 183 r~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~--------------~~~~L--------~~~ef~ 240 (369)
++++...+. ..+++++.+|..+.+ +.++||+|+++.+--.. |...| +...++
T Consensus 179 ~~N~~~~~l---~~~v~~~~~D~~~~~---~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il 252 (506)
T PRK01544 179 KSNAIKYEV---TDRIQIIHSNWFENI---EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIA 252 (506)
T ss_pred HHHHHHcCC---ccceeeeecchhhhC---cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHH
Confidence 999765422 357999999987654 23579999987532110 00011 234567
Q ss_pred HHHHHhccCCceEEecc
Q 017607 241 DTIAKALRPGGVLCNMA 257 (369)
Q Consensus 241 ~~~~~~LkpgGilv~~~ 257 (369)
+.+.+.|+|||.+++..
T Consensus 253 ~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 253 ENAKQFLKPNGKIILEI 269 (506)
T ss_pred HHHHHhccCCCEEEEEE
Confidence 78889999999998743
No 19
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.53 E-value=7.1e-14 Score=115.43 Aligned_cols=110 Identities=27% Similarity=0.485 Sum_probs=87.5
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEc
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 223 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 223 (369)
.+|||+|||+|.++..+++.. ..+++++|+|+..++.++++++.... ..+++++++|+.+..+....++||+|+.|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL---DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT---TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC---CceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999987 68999999999999999999887532 45799999999998865666899999987
Q ss_pred CCCCCCC----ccccccHHHHHHHHHhccCCceEEecc
Q 017607 224 SSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 224 ~~~p~~~----~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+..... ...-....|++.+.+.|+|||++++..
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6543211 111234689999999999999998643
No 20
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=1.7e-14 Score=138.35 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=139.6
Q ss_pred cccccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHH
Q 017607 50 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129 (369)
Q Consensus 50 ~~~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~ 129 (369)
.....|+.++..+.+|+.++.+.+.++.+.+...+..--.......|.|+|.-.... +|.-+.++..+.+++++.....
T Consensus 24 ~~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~~f-~g~~f~v~~~vliPr~ete~lv 102 (284)
T TIGR00536 24 WLEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEF-YGLEFFVNEHVLIPRPETEELV 102 (284)
T ss_pred HHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcceE-cCeEEEECCCCcCCCCccHHHH
Confidence 345678888888889998888888888777554432111111233789999887654 7888888887777776643332
Q ss_pred HH-HHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 130 EM-IAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 130 e~-l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
+. +..+. ......+|||+|||+|.++..+++..+..+|+++|+++.+++.|+++....+. ..+++++.+|..+.
T Consensus 103 ~~~l~~~~--~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~---~~~v~~~~~d~~~~ 177 (284)
T TIGR00536 103 EKALASLI--SQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL---EHRVEFIQSNLFEP 177 (284)
T ss_pred HHHHHHhh--hcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEECchhcc
Confidence 22 21111 11222689999999999999999987777999999999999999998765522 24699999998765
Q ss_pred HhhCCCCCccEEEEcCCCCCC-------------Cccc--------cccHHHHHHHHHhccCCceEEeccc
Q 017607 209 LRQVPRGKYDAIIVDSSDPVG-------------PAQE--------LVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~-------------~~~~--------L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
+ +.++||+|+++.+--.. |... .+.+.+++.+.+.|+|||++++..+
T Consensus 178 ~---~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 178 L---AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred C---cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 4 23479999986432110 0000 1345688899999999999998654
No 21
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.48 E-value=6.5e-13 Score=120.46 Aligned_cols=114 Identities=20% Similarity=0.364 Sum_probs=93.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvI 220 (369)
...+|||||||+|..+..+++..+..++++||+++.+++.|+++....+. .+++++.+|+.+++... +++.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 44589999999999999999887778999999999999999988765422 48999999998876443 34589999
Q ss_pred EEcCCCCCCCc----cccccHHHHHHHHHhccCCceEEecccc
Q 017607 221 IVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 221 i~D~~~p~~~~----~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+++.++|+... ..+...++++.++++|+|||.+.+.+++
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99998887432 2355678999999999999999887654
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.47 E-value=2.1e-13 Score=121.14 Aligned_cols=107 Identities=21% Similarity=0.321 Sum_probs=85.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..++|||+|||+|.++..+++..+..+|+++|+++.+++.+++++..+.. .+++++..|..+.+. +++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~v~~~~~d~~~~~~---~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----ENVEVVQSDLFEALP---DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TTEEEEESSTTTTCC---TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----ccccccccccccccc---ccceeEEE
Confidence 56799999999999999999988777899999999999999999887632 229999999877653 47899999
Q ss_pred EcCCCCCCCc-cccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPA-QELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~-~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
++.+...+.. ......+|++.+.++|+|||.+++
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 8765433332 122457899999999999998854
No 23
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=119.71 Aligned_cols=127 Identities=26% Similarity=0.336 Sum_probs=95.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHh-hCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR-QVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~-~~~~~~fDvI 220 (369)
+..+|||||||+|..+..+++..+..+|++||+++.+++.+++++...+ -++++++++|+.+.+. ..++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence 4678999999999999999987666789999999999999999876441 2579999999944443 2345789999
Q ss_pred EEcCCCCCCCc----cccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 221 IVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 221 i~D~~~p~~~~----~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
++..++|+... .......+++.+.++|+|||++++.+.+ ......+.+.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence 98776665331 1123578999999999999999986543 2344455555544
No 24
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=3.2e-12 Score=119.25 Aligned_cols=131 Identities=19% Similarity=0.299 Sum_probs=103.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+..++|||||||.|.++..+++..+..+|++|||++++.+.|+++...... ..|++++++|..++.+.....+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l---~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL---EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc---hhceeEehhhHHHhhhcccccccCEE
Confidence 347899999999999999999886568999999999999999999876422 56999999999999877655679999
Q ss_pred EEcCCCCCCC-c-------------cccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH-HCC
Q 017607 221 IVDSSDPVGP-A-------------QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE-TFK 279 (369)
Q Consensus 221 i~D~~~p~~~-~-------------~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~-~F~ 279 (369)
|++.+.-... . ..+.-.++++.+.++|||||.+++ ...++.+.+++..+++ -|.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-----EecHHHHHHHHHHHHhcCCC
Confidence 9875431100 0 113346899999999999999986 3456677888888888 354
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=1.3e-11 Score=114.41 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=86.5
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
.+++..+.. ++..+|||||||+|..+..+++. ++..+|+++|+++.+++.+++++.... -++++++.+|+.+
T Consensus 35 ~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~ 107 (231)
T TIGR02752 35 KDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAME 107 (231)
T ss_pred HHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhc
Confidence 445544432 34679999999999999999886 355699999999999999999876431 2579999999876
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+. .++++||+|++.......+. ..++++.+.++|+|||.+++.
T Consensus 108 ~~--~~~~~fD~V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 108 LP--FDDNSFDYVTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CC--CCCCCccEEEEecccccCCC----HHHHHHHHHHHcCcCeEEEEE
Confidence 42 23568999997643322221 246899999999999999864
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=6.8e-12 Score=116.83 Aligned_cols=105 Identities=19% Similarity=0.303 Sum_probs=86.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||||||+|-++..+++..+..+|+++|+++.|++.+++.....+. ..++++++||.+. ..++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----~~i~fv~~dAe~L--Pf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QNVEFVVGDAENL--PFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----cceEEEEechhhC--CCCCCccCEEE
Confidence 67899999999999999999987778999999999999999998875421 2399999999875 36788999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+...-..-+ -....+++++|+|||||.+++.
T Consensus 125 ~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVT----DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred eeehhhcCC----CHHHHHHHHHHhhcCCeEEEEE
Confidence 764432222 1356899999999999988764
No 27
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=5.9e-12 Score=115.71 Aligned_cols=105 Identities=23% Similarity=0.416 Sum_probs=90.6
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fD 218 (369)
..+++||+||++.|..+.+++..-+ ..+++.||+|++.++.|++++.+.+. ++++.++. +|+.+.+.....++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~---~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV---DDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC---cceEEEEecCcHHHHHHhccCCCcc
Confidence 4789999999999999999998755 77999999999999999999988744 45799999 6999999763357999
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+|++|+.-.. +++||+.+.+.|+|||++++
T Consensus 135 liFIDadK~~-------yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 135 LVFIDADKAD-------YPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEEeCChhh-------CHHHHHHHHHHhCCCcEEEE
Confidence 9999986444 34799999999999999986
No 28
>PLN02476 O-methyltransferase
Probab=99.40 E-value=1.4e-11 Score=117.43 Aligned_cols=105 Identities=23% Similarity=0.363 Sum_probs=87.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC----CCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~----~~~ 215 (369)
.++++||+||+|+|..+.++++. ++..+|+.+|+|++..+.|++++...+. . .+++++.+|+.+.|+.. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~-~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--S-HKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--C-CcEEEEEcCHHHHHHHHHhcccCC
Confidence 46889999999999999999875 3456899999999999999999987643 3 58999999999988653 135
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+||+|++|..... +.++|+.+.+.|+|||++++
T Consensus 194 ~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 194 SYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEE
Confidence 8999999985322 45789999999999999986
No 29
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=8.7e-12 Score=117.69 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=106.9
Q ss_pred eeCCCceEEEEEecCceeEEEEcCeEeecccchhHH-HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEE
Q 017607 93 GKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAY-QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDI 171 (369)
Q Consensus 93 ~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y-~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~ 171 (369)
..-|.|+|...... +|..+.++..+-+..++.... ...+..+. ..+.+.+|||+|||+|.++..+++..+..+|++
T Consensus 39 ~~~Pl~yi~g~~~f-~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~ 115 (251)
T TIGR03704 39 AGLPLEHVLGWAEF-CGLRIAVDPGVFVPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAALDGIELHA 115 (251)
T ss_pred cCCCHHHhcccCeE-cCeEEEECCCCcCCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEE
Confidence 46788999888654 566777776555554443222 22222211 122345899999999999999998766678999
Q ss_pred EECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCC-CC-----Cc--------ccc---
Q 017607 172 CEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDP-VG-----PA--------QEL--- 234 (369)
Q Consensus 172 VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p-~~-----~~--------~~L--- 234 (369)
+|+|+.+++.|++++... +++++.+|..+++.....++||+|++|.+-- .. ++ ..+
T Consensus 116 vDis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg 188 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGG 188 (251)
T ss_pred EECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCC
Confidence 999999999999998643 2578999988766432235799999886431 10 00 001
Q ss_pred -----ccHHHHHHHHHhccCCceEEecc
Q 017607 235 -----VEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 235 -----~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+.+.+++.+.+.|+|||.+++..
T Consensus 189 ~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 189 ADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13578888889999999998754
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.38 E-value=2.6e-12 Score=111.56 Aligned_cols=107 Identities=27% Similarity=0.368 Sum_probs=83.8
Q ss_pred CCCEEEEEeCcccHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREIS-RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~-k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+..... ++++++++|..+ +...-+++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----DNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----TTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----cccceEEeehhc-cccccCCCeeEE
Confidence 56799999999999999999 556678999999999999999998766522 489999999998 543111689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++........ ....+++.+.+.|+++|++++..
T Consensus 78 ~~~~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHHFP----DPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGGTS----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCchhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9875431111 12468999999999999998654
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=1.4e-11 Score=110.69 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=81.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++.+|||||||+|.++..+++..+..+|+++|+++.+++.++++....+. ++++++.+|+.++. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~----~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL----NNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC----CCeEEEecchhhcc---ccCCccEEE
Confidence 37899999999999999988776667899999999999999988765422 46999999998752 246899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++. ... -..+++.+.+.|+|||.+++..
T Consensus 115 s~~---~~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA---LAS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh---hhC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 765 111 2458889999999999999754
No 32
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.2e-13 Score=126.89 Aligned_cols=195 Identities=16% Similarity=0.119 Sum_probs=129.3
Q ss_pred cccceeccccCCCccccccccCCCCCcccceeeeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHHH
Q 017607 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEM 131 (369)
Q Consensus 52 ~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e~ 131 (369)
.++.+.+.....+++....+....+.+.....+..........-|-|+|...... +|..+.++-.+.++.+|...-.+.
T Consensus 24 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f-~gl~~~v~~~vliPr~dTe~Lve~ 102 (280)
T COG2890 24 DAELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEF-GGLRFKVDEGVLIPRPDTELLVEA 102 (280)
T ss_pred cHHHHHHHHhCCCHHHHhhccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCee-cceeeeeCCCceecCCchHHHHHH
Confidence 3344444444445555555555555444333332111112466788888887544 788899999999999995444443
Q ss_pred HHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh
Q 017607 132 IAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 211 (369)
Q Consensus 132 l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~ 211 (369)
+. .... ..+.+|||||||+|.++..+++..+..+|+++|||+..+++|+++....+. .++.++.+|.++-+
T Consensus 103 ~l--~~~~-~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l----~~~~~~~~dlf~~~-- 173 (280)
T COG2890 103 AL--ALLL-QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL----VRVLVVQSDLFEPL-- 173 (280)
T ss_pred HH--Hhhh-hcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC----ccEEEEeeeccccc--
Confidence 22 1111 112289999999999999999998888999999999999999999876632 45667777766544
Q ss_pred CCCCCccEEEEcCCCCCCC-----c----------------cccccHHHHHHHHHhccCCceEEeccc
Q 017607 212 VPRGKYDAIIVDSSDPVGP-----A----------------QELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~-----~----------------~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
.++||+|+++.+--... + .--....|+..+.+.|+|||++++..+
T Consensus 174 --~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 174 --RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred --CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 24899999664321000 0 001346788899999999999998653
No 33
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.37 E-value=7.5e-12 Score=124.04 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=97.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
....+||||||+|..+..+++..|...++++|+++.+++.+.+.....+ -.++.++.+|+..++...+++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 3458999999999999999998778899999999999999988876542 257999999998876656678999999
Q ss_pred EcCCCCCCCc--cccccHHHHHHHHHhccCCceEEecccccc
Q 017607 222 VDSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 222 ~D~~~p~~~~--~~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
+..++||.-. ..+....|++.++++|+|||.+.+.+++..
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 9998987422 345668999999999999999998876644
No 34
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=3.7e-12 Score=115.06 Aligned_cols=112 Identities=19% Similarity=0.331 Sum_probs=96.9
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.+.++++|+. .+.+|.|||||.|..+..+++..|...|+++|-|++|++.|++.+ +++++..+|++.|
T Consensus 20 ~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 20 RDLLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 6788898875 678999999999999999999999999999999999999998876 4789999999998
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
- ++...|+|+.++...+-+. ..+.+..+...|.|||+|.+|...
T Consensus 88 ~---p~~~~dllfaNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 88 K---PEQPTDLLFANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred C---CCCccchhhhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCC
Confidence 3 3568999998877766553 246889999999999999999754
No 35
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.36 E-value=1.9e-11 Score=114.13 Aligned_cols=105 Identities=24% Similarity=0.358 Sum_probs=86.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC----CCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~----~~~ 215 (369)
.++++||+||||+|..+..+++. ++..+|+++|+|++.++.|++++...+. ..+++++.+|+.+.+... +.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl---~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV---DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 36889999999999999998875 4467999999999999999999987633 358999999999987643 135
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+||+|++|...+. ..++++.+.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~-------y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN-------YVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCeEEEE
Confidence 8999999875322 23689999999999999885
No 36
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=6.5e-12 Score=118.13 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=81.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHh--cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISR--HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k--~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
++..+|||||||+|..+..+++ ..+..++++||+++.|++.|++++...+. ..+++++.+|+.+.. ...+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~---~~~v~~~~~d~~~~~----~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---PTPVDVIEGDIRDIA----IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEeCChhhCC----CCCCC
Confidence 4567999999999999998887 34567999999999999999998865422 347999999987642 24599
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|++......-+.. ....+++.++++|+|||.+++.
T Consensus 128 ~vv~~~~l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EEehhhHHHhCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 99965432222111 1357899999999999999874
No 37
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=1.9e-12 Score=122.92 Aligned_cols=194 Identities=17% Similarity=0.209 Sum_probs=129.8
Q ss_pred cccceeccccCCCccccccccCCCCCcccceeee--eeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHH
Q 017607 52 VSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLK--VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ 129 (369)
Q Consensus 52 ~~~w~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~ 129 (369)
..+|+..+..+.++..+..+.+.++.+.....+. +.+. ...-|.|+|.-.... +|..+.++..+.++.++.....
T Consensus 21 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~i~g~~~f-~~~~~~~~~~~lipr~~te~l~ 97 (275)
T PRK09328 21 DAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARR--AAGEPLQYILGEAEF-WGLDFKVSPGVLIPRPETEELV 97 (275)
T ss_pred HHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHH--HcCCCHHHHceeceE-cCcEEEECCCceeCCCCcHHHH
Confidence 4557777777777777777766665554332221 1111 244577777666544 6777777766667666644444
Q ss_pred HHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH
Q 017607 130 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 209 (369)
Q Consensus 130 e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l 209 (369)
+.+... ....++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++... ...+++++.+|..+.+
T Consensus 98 ~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~ 171 (275)
T PRK09328 98 EWALEA--LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPL 171 (275)
T ss_pred HHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcC
Confidence 433311 1123467899999999999999999877789999999999999999987611 1357999999986543
Q ss_pred hhCCCCCccEEEEcCCCCCC--------------Ccccc--------ccHHHHHHHHHhccCCceEEecc
Q 017607 210 RQVPRGKYDAIIVDSSDPVG--------------PAQEL--------VEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~~--------------~~~~L--------~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
. .++||+|+++.+.-.. +...+ +...+++.+.+.|+|||.+++..
T Consensus 172 ~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 172 P---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred C---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2 3689999986532110 00011 12567888889999999999854
No 38
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.35 E-value=5.5e-12 Score=115.40 Aligned_cols=106 Identities=26% Similarity=0.428 Sum_probs=86.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC----CCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~----~~~ 215 (369)
.+|++||+||++.|..+..+++. ++..+|+.+|+|++..+.|++++...+. ..+++++.+|+.+++... ..+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~---~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL---DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG---GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC---CCcEEEEEeccHhhHHHHHhccCCC
Confidence 37899999999999999999986 4467999999999999999999987632 358999999999987653 124
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+||+|++|+.-. .+.++|+.+.+.|+|||++++.
T Consensus 121 ~fD~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKR-------NYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEccccc-------chhhHHHHHhhhccCCeEEEEc
Confidence 799999998421 2457899999999999999863
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.35 E-value=2.4e-11 Score=109.71 Aligned_cols=102 Identities=21% Similarity=0.263 Sum_probs=83.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+.+.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++....+. ++++++.+|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l----~~i~~~~~d~~~~~~---~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL----KNVTVVHGRAEEFGQ---EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC----CCEEEEeccHhhCCC---CCCccEE
Confidence 447899999999999999998866678999999999999999998776532 349999999987532 4689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++.. .. -..+++.+++.|+|||.+++..
T Consensus 117 ~~~~~---~~-----~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRAV---AS-----LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEccc---cC-----HHHHHHHHHHhcCCCeEEEEEe
Confidence 98642 11 2468999999999999998754
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=8.7e-12 Score=103.32 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=82.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||.|..+..+++..+..+|+++|+++.+++.+++++.... .++++++.+|+...+... .++||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDS-LPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhh-cCCCCEEE
Confidence 4569999999999999999988666799999999999999999876542 247899999977544332 35899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++... .. ..++++.+++.|+|||.+++..
T Consensus 94 ~~~~~--~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSG--GL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcc--hh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 86421 11 2478999999999999998753
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.34 E-value=3.8e-12 Score=100.12 Aligned_cols=95 Identities=20% Similarity=0.346 Sum_probs=74.5
Q ss_pred EEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCC
Q 017607 147 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 226 (369)
Q Consensus 147 LdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 226 (369)
||||||+|..+..++++ +..+|+++|+++++++.+++.... .++.++.+|+.++ ..++++||+|++...-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l--~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL--PFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS--SS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC--ccccccccccccccce
Confidence 89999999999999999 568999999999999999998753 4677999998876 4456899999975443
Q ss_pred CCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 227 PVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 227 p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
.... ....++++++|+|||||.+++
T Consensus 71 ~~~~----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS----HHHHHHHHHHHHEEEEEEEEE
T ss_pred eecc----CHHHHHHHHHHHcCcCeEEeC
Confidence 2221 135799999999999999874
No 42
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.34 E-value=3.5e-12 Score=119.06 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=74.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.++.+|||+|||+|.+++.++++ .+..+|+++|+++.|++.|++.+.... ..+++++++|+.+. ..++++||+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~l--p~~d~sfD~ 119 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAEDL--PFPDNSFDA 119 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB----S-TT-EEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHHh--cCCCCceeE
Confidence 45779999999999999999987 445799999999999999999887542 24899999999875 245689999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|++-..-...+ -....+++++|+|||||.+++.
T Consensus 120 v~~~fglrn~~----d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 120 VTCSFGLRNFP----DRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp EEEES-GGG-S----SHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEHHhhHHhhC----CHHHHHHHHHHHcCCCeEEEEe
Confidence 99754221111 1356899999999999998864
No 43
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=122.83 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=97.7
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.-++.++|.. ...+|||||||+|.++..+++..+..+|++||+++.+++.|++++..+... ...+++++.+|+...
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEcccccc
Confidence 3456666542 236999999999999999998877789999999999999999988654210 124789999998765
Q ss_pred HhhCCCCCccEEEEcCCCCCCC-ccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGP-AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~-~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
+ ++++||+|+++.+...+. ...-...++++.++++|+|||.+.+..... -.....+++.|.
T Consensus 294 ~---~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~-------l~y~~~L~~~fg 355 (378)
T PRK15001 294 V---EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH-------LDYFHKLKKIFG 355 (378)
T ss_pred C---CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecC-------cCHHHHHHHHcC
Confidence 4 235899999876543322 111123578999999999999887653221 123355667887
No 44
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=4.7e-12 Score=118.32 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=103.5
Q ss_pred CCCceEEEEEecCceeEEEEcCeEeecccchhHHH-HHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEE
Q 017607 95 SEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQ-EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICE 173 (369)
Q Consensus 95 s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~-e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VE 173 (369)
-|.|++.-.... ++..+.++..+....++..... .++..++ +++.+|||+|||+|..+..+++..+..+++++|
T Consensus 44 ~pl~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD 118 (251)
T TIGR03534 44 EPVAYILGEREF-YGLDFKVSPGVLIPRPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKERPDARVTAVD 118 (251)
T ss_pred CCHHHHcccceE-eceEEEECCCcccCCCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEE
Confidence 355655444332 5666666666555555533332 2233221 345699999999999999999886677999999
Q ss_pred CCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCC-----ccc---------------
Q 017607 174 IDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP-----AQE--------------- 233 (369)
Q Consensus 174 id~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~-----~~~--------------- 233 (369)
+++.+++.+++++...+. ++++++.+|+.+.+ +.++||+|+++.+-.... ...
T Consensus 119 ~~~~~~~~a~~~~~~~~~----~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~ 191 (251)
T TIGR03534 119 ISPEALAVARKNAARLGL----DNVTFLQSDWFEPL---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED 191 (251)
T ss_pred CCHHHHHHHHHHHHHcCC----CeEEEEECchhccC---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc
Confidence 999999999998765422 36999999987743 246899999865421100 000
Q ss_pred --cccHHHHHHHHHhccCCceEEecc
Q 017607 234 --LVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 234 --L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.....+++.+.+.|+|||.+++..
T Consensus 192 ~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 192 GLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 012467899999999999998754
No 45
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=2.9e-11 Score=121.10 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=94.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDv 219 (369)
+.++|||+|||+|+++..++.. +..+|++||+|+.+++.|++++..++ ++..+++++.+|++++++.. ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 4689999999999998877654 35699999999999999999987763 23347999999999998653 2358999
Q ss_pred EEEcCCCCCCCccccc-----cHHHHHHHHHhccCCceEEecccccchhhhHHHHHH
Q 017607 220 IIVDSSDPVGPAQELV-----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 271 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~-----~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~ 271 (369)
||+|++.-......++ ..++++.+.++|+|||++++.+.|.....+.+..++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHH
Confidence 9998764221111111 245667789999999999987777666554444443
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.32 E-value=5.4e-11 Score=106.97 Aligned_cols=120 Identities=21% Similarity=0.213 Sum_probs=89.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||||||+|.++..+++..+..+|+++|+++.+++.+++++..... .+++++.+|+...+ .++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~----~~i~~~~~d~~~~~----~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC----GNIDIIPGEAPIEL----PGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCeEEEecCchhhc----CcCCCEE
Confidence 456799999999999999999877677999999999999999998765522 46999999975432 3579999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHH-CC
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET-FK 279 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~-F~ 279 (369)
+++... . ...++++.+.+.|+|||.+++.... ......+.+.+++. |.
T Consensus 102 ~~~~~~--~-----~~~~~l~~~~~~Lk~gG~lv~~~~~----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 102 FIGGSG--G-----NLTAIIDWSLAHLHPGGRLVLTFIL----LENLHSALAHLEKCGVS 150 (187)
T ss_pred EECCCc--c-----CHHHHHHHHHHhcCCCeEEEEEEec----HhhHHHHHHHHHHCCCC
Confidence 986432 1 1246889999999999999874311 12234455555543 44
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.32 E-value=2e-11 Score=115.10 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=83.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.++.+|||||||+|.++..+++..+..+|++||+++.+++.+++++ ++++++.+|+..+. +.++||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~---~~~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ---PPQALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC---CCCCccEE
Confidence 3567999999999999999998766789999999999999999875 35889999987663 23589999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
++.....+.+. ...+++.+.++|+|||.++++..
T Consensus 98 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 98 FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEECC
Confidence 98765433221 35789999999999999988653
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=2.6e-11 Score=114.42 Aligned_cols=107 Identities=22% Similarity=0.343 Sum_probs=82.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+.+.+|||||||+|..+..+++.. .+|+++|+++++++.|+++....+. .++++++.+|+.+.... .+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~---~~~v~~~~~d~~~l~~~-~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGV---SDNMQFIHCAAQDIAQH-LETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC---ccceEEEEcCHHHHhhh-cCCCCCEE
Confidence 356799999999999999999874 6899999999999999998765421 35799999999875422 34689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++...-..-.. ...+++.+.++|+|||++++..
T Consensus 117 ~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVAD----PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 97543221111 2468999999999999998643
No 49
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.29 E-value=4.7e-11 Score=117.45 Aligned_cols=121 Identities=18% Similarity=0.269 Sum_probs=89.3
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
..+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++.... ...+++..|+...+ +++||+||+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~----~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI----KGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc----CCCccEEEE
Confidence 458999999999999999998777789999999999999999887652 23577888876542 368999998
Q ss_pred cCCCCCCCcc-ccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 223 DSSDPVGPAQ-ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 223 D~~~p~~~~~-~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
+.+.+.+... .-....+++.+.++|+|||.+++.+......+ ..+.+.|+
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~-------~~l~~~Fg 318 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-------DLLDETFG 318 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH-------HHHHHHcC
Confidence 7654333211 11236799999999999999876543322111 34456787
No 50
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.27 E-value=4e-11 Score=113.77 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=81.6
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
+++.+|||||||+|.++..+++. ++..+|+++|++++|++.|++..+..... ..++++++.+|+.+. ..++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l--p~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL--PFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC--CCCCCCEeE
Confidence 35679999999999999998876 34569999999999999998765421110 135799999998764 234578999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|++...-...+ -...++++++++|||||.+++.
T Consensus 149 V~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVV----DRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccCC----CHHHHHHHHHHHcCcCcEEEEE
Confidence 99754322221 1356899999999999998764
No 51
>PLN02244 tocopherol O-methyltransferase
Probab=99.27 E-value=3.1e-11 Score=118.73 Aligned_cols=106 Identities=20% Similarity=0.334 Sum_probs=82.1
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+.+|||||||+|.++..+++.. ..+|++||+++.+++.+++.....+. .++++++.+|+.+. ..++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~---~~~v~~~~~D~~~~--~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL---SDKVSFQVADALNQ--PFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEEcCcccC--CCCCCCccEE
Confidence 456799999999999999999875 46899999999999999987654321 35799999998764 2345789999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
++.......+. ...+++++.++|+|||.+++.
T Consensus 191 ~s~~~~~h~~d----~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 191 WSMESGEHMPD----KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred EECCchhccCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 97433211111 357999999999999998864
No 52
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.27 E-value=2.6e-11 Score=114.35 Aligned_cols=99 Identities=16% Similarity=0.299 Sum_probs=80.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. +.++||+|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~fD~v 93 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK---PKPDTDVV 93 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC---CCCCceEE
Confidence 456899999999999999999876667999999999999998762 4778999987653 24689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++...-++.+. ...+++.++++|+|||.+++..
T Consensus 94 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 98655433321 2568999999999999998764
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.27 E-value=8.4e-11 Score=109.79 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=82.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
++..+|||||||+|..+..++++ .+..+++++|+++.+++.|++++..... ..+++++.+|+.++. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~---~~~v~~~~~d~~~~~----~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS---EIPVEILCNDIRHVE----IKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEECChhhCC----CCCCC
Confidence 35678999999999999999885 2467999999999999999998764321 357999999987652 23599
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|++....+..+.. -...+++.++++|+|||.+++.
T Consensus 125 ~v~~~~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 125 MVILNFTLQFLPPE--DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EEeeecchhhCCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence 98865543332211 1357899999999999999875
No 54
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=2.7e-11 Score=114.97 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=86.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||||||.|++++.++++. ..+|++|++|++..+.+++.+...+. + .+++++..|-+++ .++||-|
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~-~~v~v~l~d~rd~-----~e~fDrI 141 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--E-DNVEVRLQDYRDF-----EEPFDRI 141 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--C-cccEEEecccccc-----cccccee
Confidence 567899999999999999999987 56999999999999999998876633 3 5899999997776 3459999
Q ss_pred EE-cCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 221 IV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~-D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
++ ..+...+.. ....||+.+++.|+|||.++.++-
T Consensus 142 vSvgmfEhvg~~---~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 142 VSVGMFEHVGKE---NYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eehhhHHHhCcc---cHHHHHHHHHhhcCCCceEEEEEe
Confidence 93 444444442 357899999999999999998763
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=1.3e-11 Score=99.74 Aligned_cols=97 Identities=29% Similarity=0.423 Sum_probs=72.1
Q ss_pred EEEEeCcccHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 146 VLVVGGGDGGVLREISRHD---SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~---~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
|||+|||+|..++.+++.. +..++++||+|+++++.+++++... ..+++++++|+.++-.. +++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l~~~--~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDLPFS--DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCHHHH--SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHCccc--CCCeeEEEE
Confidence 7999999999999999874 3379999999999999999998653 35899999999885432 468999997
Q ss_pred -cCCCCCCCccccccHHHHHHHHHhccCCc
Q 017607 223 -DSSDPVGPAQELVEKPFFDTIAKALRPGG 251 (369)
Q Consensus 223 -D~~~p~~~~~~L~~~ef~~~~~~~LkpgG 251 (369)
..+-..-.. -....+++.+.++|+|||
T Consensus 74 ~~~~~~~~~~--~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSP--EELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSH--HHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCH--HHHHHHHHHHHHHhCCCC
Confidence 231111111 113578999999999998
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=105.86 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=92.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++...+. ..+++++.+|+.+++... .++||+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~~~d~~~~l~~~-~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLIKGEAPEILFTI-NEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEEEechhhhHhhc-CCCCCE
Confidence 45679999999999999999875 4456899999999999999998776521 257999999998877543 358999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHH
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~ 277 (369)
|+++.... ...++++.+.+.|+|||.+++... .......+.+.+++.
T Consensus 115 V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 115 IFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALENI 161 (198)
T ss_pred EEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHHc
Confidence 99754211 124689999999999999987432 223455666666543
No 57
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.26 E-value=1.1e-10 Score=104.12 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=96.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+++|||||+|+++.+++...+..+|+++|-|++.++..++|...++ -++++++.+|+-+.|.+.+ ++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L~~~~--~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEALPDLP--SPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhhcCCC--CCCEE
Confidence 45679999999999999999988888999999999999999999988774 3789999999999997642 79999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHH
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~ 277 (369)
++... +. -.+.++.+...|+|||.+|.++-. .+.....++.+++.
T Consensus 107 FIGGg---~~-----i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~ 151 (187)
T COG2242 107 FIGGG---GN-----IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL 151 (187)
T ss_pred EECCC---CC-----HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence 98664 11 246899999999999999987643 23344455555543
No 58
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.25 E-value=4.6e-11 Score=108.59 Aligned_cols=124 Identities=28% Similarity=0.385 Sum_probs=96.1
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccEEEEc
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAIIVD 223 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D 223 (369)
-+||||||.|..+.++|+..|...++++|+....+..+.+.....+ -+|+.++.+|+..++... ++++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~----l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG----LKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT----TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc----ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 7999999999999999998888999999999999998888766552 378999999999987654 34799999999
Q ss_pred CCCCCCC----ccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 224 SSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 224 ~~~p~~~----~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
.+||+-- -..+++.+|++.+.++|+|||.+.+.+++.. .+..+.+.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~----y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE----YAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH----HHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH----HHHHHHHHHHh
Confidence 9999842 4568999999999999999999998886633 44555555555
No 59
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.25 E-value=2.7e-11 Score=115.60 Aligned_cols=107 Identities=22% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
..+..+|||||||.|+++..+++..+ .+|+++.+|++..+.+++.+...+. ..++++...|.+++ +.+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl---~~~v~v~~~D~~~~-----~~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGL---EDRVEVRLQDYRDL-----PGKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS---SSTEEEEES-GGG--------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEEeecccc-----CCCCCE
Confidence 35678999999999999999999863 5899999999999999998876533 35899999997764 248999
Q ss_pred EEE-cCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 220 IIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 220 Ii~-D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
|++ ......+. -....||+.+.+.|+|||.++++.-
T Consensus 131 IvSi~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 131 IVSIEMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEESEGGGTCG---GGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEechhhcCh---hHHHHHHHHHHHhcCCCcEEEEEec
Confidence 994 33333332 2346899999999999999998753
No 60
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.24 E-value=1.6e-10 Score=108.92 Aligned_cols=161 Identities=20% Similarity=0.191 Sum_probs=99.5
Q ss_pred eEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh
Q 017607 110 KVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189 (369)
Q Consensus 110 ~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~ 189 (369)
..+.+|..+.+..........++..+.. ....+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++...
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~-~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEK-LVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHh-hcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc
Confidence 4567776666654432222222222221 12457899999999999999887764 347999999999999999988654
Q ss_pred cCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHH
Q 017607 190 AVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIED 269 (369)
Q Consensus 190 ~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~ 269 (369)
+. ..++.+..+| .+||+|+++.... ....+++.+.++|+|||.+++.... ......
T Consensus 166 ~~---~~~~~~~~~~----------~~fD~Vvani~~~-------~~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~ 221 (250)
T PRK00517 166 GV---ELNVYLPQGD----------LKADVIVANILAN-------PLLELAPDLARLLKPGGRLILSGIL----EEQADE 221 (250)
T ss_pred CC---CceEEEccCC----------CCcCEEEEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEECc----HhhHHH
Confidence 22 1234433332 2699999764311 1245788999999999999975321 122344
Q ss_pred HHHHHHHH-CCCCeeEEEEEEeeccCCcEEEEEeec
Q 017607 270 MISICRET-FKGSVHYAWASVPTYPSGIIGFLICST 304 (369)
Q Consensus 270 i~~~l~~~-F~~~v~~~~~~vP~~p~g~w~f~~ask 304 (369)
+.+.+++. |. . ..+-. .+.|..+++.|
T Consensus 222 v~~~l~~~Gf~-~-----~~~~~--~~~W~~~~~~~ 249 (250)
T PRK00517 222 VLEAYEEAGFT-L-----DEVLE--RGEWVALVGKK 249 (250)
T ss_pred HHHHHHHCCCE-E-----EEEEE--eCCEEEEEEEe
Confidence 55555543 33 1 22222 36787776654
No 61
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.23 E-value=1.7e-10 Score=104.56 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=83.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
....+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++...+. .+++++.+|+.+.+... ...+|.|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~----~~v~~~~~d~~~~~~~~-~~~~d~v 113 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV----KNVEVIEGSAPECLAQL-APAPDRV 113 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCeEEEECchHHHHhhC-CCCCCEE
Confidence 355799999999999999998776567999999999999999998876522 46999999997755433 2357888
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+++... . ...+++.+.+.|+|||.+++...+
T Consensus 114 ~~~~~~---~-----~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 114 CIEGGR---P-----IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred EEECCc---C-----HHHHHHHHHHhcCCCeEEEEEeec
Confidence 876421 1 256899999999999999986543
No 62
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=2.5e-10 Score=105.66 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=80.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++... ..+++++.+|..+.+. +++||+|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-----~~~~~~~~~d~~~~~~---~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-----GVDVDVRRGDWARAVE---FRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-----CCeeEEEECchhhhcc---CCCeeEEE
Confidence 45799999999999999998874 458999999999999999987654 2358899999877542 46899999
Q ss_pred EcCCCCCCCcc-----------------ccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQ-----------------ELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~-----------------~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
++.+....... ......+++.+.+.|+|||++++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 87532111100 001245788999999999998863
No 63
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.7e-10 Score=109.93 Aligned_cols=133 Identities=20% Similarity=0.292 Sum_probs=96.7
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
+-.+.+++.. ...+|||+|||.|.++..+++..|..++++||+|...++.||+++..++. .+..++..|..+-
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~~v~~s~~~~~ 220 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV----ENTEVWASNLYEP 220 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC----CccEEEEeccccc
Confidence 4455555542 23499999999999999999998899999999999999999999876532 2237888887665
Q ss_pred HhhCCCCCccEEEEcCCCCCCCcc-ccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQ-ELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~-~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
++ ++||+||++.+.+.+... .-...++++.++++|++||-|-+.+... ......|++.|.
T Consensus 221 v~----~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~-------l~y~~~L~~~Fg 281 (300)
T COG2813 221 VE----GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH-------LPYEKKLKELFG 281 (300)
T ss_pred cc----ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC-------CChHHHHHHhcC
Confidence 42 489999977665444321 1123489999999999999765433211 123356788898
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.22 E-value=1.5e-10 Score=103.45 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=80.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++++|||+|||+|.++..+++..+ +|+++|+++.+++.+++++... ..+++++.+|..+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~----~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV----RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc----CCcccEEE
Confidence 457899999999999999998753 8999999999999999988654 236889999976643 35899999
Q ss_pred EcCCCCCCCc-----------------cccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPA-----------------QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~-----------------~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++.+...... .......+++.+.+.|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 8754311110 00113568999999999999987643
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.2e-10 Score=106.48 Aligned_cols=100 Identities=23% Similarity=0.231 Sum_probs=78.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+..+|||||||+|..+..+++.. ...+|+++|+++++++.|++++...+. ..+++++.+|+.+.+.. ..+||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~---~~~v~~~~~d~~~~~~~--~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY---WGVVEVYHGDGKRGLEK--HAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEECCcccCCcc--CCCccEE
Confidence 45799999999999999888763 246899999999999999998875522 24699999999875532 3589999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+++.... .+.+.+.+.|+|||++++.
T Consensus 147 i~~~~~~----------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 147 IVTAAAS----------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred EEccCcc----------hhhHHHHHhcCcCcEEEEE
Confidence 9876432 1234677899999999864
No 66
>PRK04266 fibrillarin; Provisional
Probab=99.22 E-value=4.9e-10 Score=104.17 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=77.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH--hhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l--~~~~~~~fD 218 (369)
.+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++.... .+++.++.+|+.... ... .++||
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l-~~~~D 143 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHV-VEKVD 143 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhc-cccCC
Confidence 356799999999999999999875456899999999999977666442 257899999986421 112 24699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+|++|..+|+. ...+++.+++.|||||.+++
T Consensus 144 ~i~~d~~~p~~------~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVAQPNQ------AEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCCChhH------HHHHHHHHHHhcCCCcEEEE
Confidence 99988765431 13468899999999999887
No 67
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.22 E-value=1.2e-10 Score=105.83 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++.....+ -.+++++..|..++ .. +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~--~~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL--TF-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC--Cc-CCCcCEEE
Confidence 46799999999999999999874 589999999999999998766532 13588899997664 22 35799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+.......+.. ....+++.++++|+|||.+++
T Consensus 101 ~~~~~~~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 75432221211 135799999999999998543
No 68
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.22 E-value=1.2e-10 Score=107.23 Aligned_cols=110 Identities=21% Similarity=0.253 Sum_probs=83.1
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
..|+..+.+ ....+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...+ -.+++++.+|+.+
T Consensus 67 ~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~ 139 (215)
T TIGR00080 67 AMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCccc
Confidence 444444432 4567999999999999999988743 3579999999999999999987652 2479999999977
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+.. ..+||+|+++...+. ..+.+.+.|+|||++++..
T Consensus 140 ~~~~--~~~fD~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEP--LAPYDRIYVTAAGPK----------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcc--cCCCCEEEEcCCccc----------ccHHHHHhcCcCcEEEEEE
Confidence 5432 358999998754321 2345778999999998743
No 69
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.21 E-value=1.2e-10 Score=107.37 Aligned_cols=103 Identities=20% Similarity=0.292 Sum_probs=82.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+.+|||||||+|..+..+++..+..+++++|+++.+++.+++.++ ++++++.+|+.+.. .++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~--~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP--LEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC--CCCCceeEE
Confidence 34679999999999999999998777789999999999999988764 37889999987653 235689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++......... ...+++.+++.|+|||.+++..
T Consensus 103 i~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDD----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 97654332211 2468999999999999998753
No 70
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.4e-10 Score=106.81 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=82.4
Q ss_pred HHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH
Q 017607 128 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 206 (369)
Q Consensus 128 Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~ 206 (369)
+..++..+.+ .+..+|||||||+|..+..+++.. +..+|+++|+++++++.+++++...+ -.+++++.+|+.
T Consensus 65 ~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~ 137 (212)
T PRK13942 65 VAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGT 137 (212)
T ss_pred HHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcc
Confidence 3444444332 356799999999999999888763 34699999999999999999987652 247999999987
Q ss_pred HHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 207 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 207 ~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.... ....||+|+++...+. ..+.+.+.|+|||.+++.
T Consensus 138 ~~~~--~~~~fD~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 138 LGYE--ENAPYDRIYVTAAGPD----------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCC--cCCCcCEEEECCCccc----------chHHHHHhhCCCcEEEEE
Confidence 6542 2368999998764321 234567789999999874
No 71
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.21 E-value=1.7e-10 Score=114.67 Aligned_cols=127 Identities=22% Similarity=0.321 Sum_probs=100.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC--CCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--RGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDv 219 (369)
..++||++-|=||+.+...++.+ ..+||.||+|...++.|++++..+ +++..++.++++|+++|++... ..+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 37899999999999999988874 569999999999999999999877 4466789999999999998652 348999
Q ss_pred EEEcCCCCCCCccccc-----cHHHHHHHHHhccCCceEEecccccchhhhHHHHHH
Q 017607 220 IIVDSSDPVGPAQELV-----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI 271 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~-----~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~ 271 (369)
||+|++.-......++ ....+..+.++|+|||++++.+.+.....+.+.+++
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i 350 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEII 350 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHH
Confidence 9999765332222222 245677899999999999987776666655554443
No 72
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.21 E-value=1.3e-10 Score=110.39 Aligned_cols=113 Identities=19% Similarity=0.324 Sum_probs=83.5
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.+++..+.+ ++..+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .++++++.+|+.+.
T Consensus 42 ~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 42 TKILSDIEL---NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK 111 (263)
T ss_pred HHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC
Confidence 444444432 456799999999999999998764 35899999999999999997653 35799999997643
Q ss_pred HhhCCCCCccEEEEc-CCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 209 LRQVPRGKYDAIIVD-SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 209 l~~~~~~~fDvIi~D-~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..++++||+|++. ........ -...+++.++++|+|||.+++.
T Consensus 112 --~~~~~~FD~V~s~~~l~h~~~~---d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 112 --DFPENTFDMIYSRDAILHLSYA---DKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred --CCCCCCeEEEEEhhhHHhCCHH---HHHHHHHHHHHHcCCCcEEEEE
Confidence 2345789999962 22221111 1356899999999999999874
No 73
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.20 E-value=1.1e-10 Score=109.72 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=88.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC-----C
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-----R 214 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~-----~ 214 (369)
.++++||+||++.|..+..+++. ++..+|+.+|++++..+.|+++|...+ + ..+++++.+|+.+.|.... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~-~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--V-AHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCceEEEeccHHHHHHHHHhccccC
Confidence 46889999999999999999875 456799999999999999999998763 3 3699999999999987631 2
Q ss_pred CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 215 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
++||+|++|..-. .+.++|+.+.+.|+|||++++
T Consensus 155 ~~fD~iFiDadK~-------~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDADKD-------NYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCCHH-------HhHHHHHHHHHhcCCCeEEEE
Confidence 5899999997522 235789999999999999986
No 74
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=106.05 Aligned_cols=115 Identities=29% Similarity=0.364 Sum_probs=100.0
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC-CccEEEE
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAIIV 222 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~-~fDvIi~ 222 (369)
.-+|+||||.|....++|+..|...+.+||+...++..|.+.....+. +|+.++..||.+++....++ +.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l----~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL----KNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC----CcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 479999999999999999998889999999999999988887766522 38999999999999877555 9999999
Q ss_pred cCCCCCCC----ccccccHHHHHHHHHhccCCceEEecccccch
Q 017607 223 DSSDPVGP----AQELVEKPFFDTIAKALRPGGVLCNMAESMWL 262 (369)
Q Consensus 223 D~~~p~~~----~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~ 262 (369)
..+|||.- -..+.+.+|++.+.+.|+|||.+-+.++...+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 99999943 45689999999999999999999988766433
No 75
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.9e-10 Score=106.79 Aligned_cols=118 Identities=26% Similarity=0.470 Sum_probs=96.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+||+.|.|+|.++..|++. .+..+|+.+|+.++..+.|++|+... ++.+ ++++..+|..+.... +.||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d-~v~~~~~Dv~~~~~~---~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD-RVTLKLGDVREGIDE---EDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cccc-ceEEEeccccccccc---cccCE
Confidence 35679999999999999999975 55689999999999999999999887 3443 599999999988643 48999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHH
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~ 277 (369)
|++|.++|| ++++.++++|+|||.+++.+.+ .+........+++.
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPT----VEQVEKTVEALRER 211 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHHHHHhc
Confidence 999999987 4689999999999999986533 22345555666665
No 76
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.19 E-value=3.9e-12 Score=102.23 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=60.7
Q ss_pred EEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCC
Q 017607 147 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSD 226 (369)
Q Consensus 147 LdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 226 (369)
||||||+|..+..++++.+..+++++|+|+.+++.+++++.... ..+......+..+.......++||+|++-..-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG----NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999999999998778899999999999998888877652 12333333333333222223589999965433
Q ss_pred CCCCccccccHHHHHHHHHhccCCceE
Q 017607 227 PVGPAQELVEKPFFDTIAKALRPGGVL 253 (369)
Q Consensus 227 p~~~~~~L~~~ef~~~~~~~LkpgGil 253 (369)
..- . ...++++.+++.|+|||+|
T Consensus 77 ~~l--~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----S---HHHHHHHHTTT-TSS-EE
T ss_pred hhh--h--hHHHHHHHHHHHcCCCCCC
Confidence 222 1 1357999999999999986
No 77
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-10 Score=105.45 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=82.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
....+||+||||+|..+.-+++.- .+|+.+|+++...+.|++++...+ -.+|.++++|+...+.. ...||.|
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~--~aPyD~I 142 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE--EAPYDRI 142 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC--CCCcCEE
Confidence 456899999999999999999885 499999999999999999998762 24599999999987654 3689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
++...-+.-|. .+.+.|++||++++-.+
T Consensus 143 ~Vtaaa~~vP~----------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVPE----------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCCH----------HHHHhcccCCEEEEEEc
Confidence 99877655542 45568999999997543
No 78
>PLN03075 nicotianamine synthase; Provisional
Probab=99.18 E-value=1.9e-10 Score=110.21 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=81.8
Q ss_pred CCCEEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.|++|++||||.|.++.. ++++.+..+++++|+|+++++.||+.+... .++ .++++++.+|+.+.... .++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCE
Confidence 789999999998744333 345677789999999999999999998531 112 46899999999885322 357999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|++++--.+... ...++++.+.+.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~---~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKE---EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccc---cHHHHHHHHHHhcCCCcEEEEec
Confidence 998832211111 24679999999999999999865
No 79
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.17 E-value=1.1e-10 Score=107.50 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=79.5
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEc
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 223 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 223 (369)
++|||||||+|..+..+++..+..+|+++|+++.+++.+++++...+. ..+++++.+|..+.. . +++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl---~~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL---QGRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC---CcceEEEecccccCC--C-CCCCCEeehH
Confidence 479999999999999999876667899999999999999998765422 358999999975431 1 3589999953
Q ss_pred CCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 224 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 224 ~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
... ..... ...+++.+++.|+|||.+++.
T Consensus 75 ~~l--~~~~~--~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 75 EVI--HHIKD--KMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHH--HhCCC--HHHHHHHHHHHcCCCCEEEEE
Confidence 221 11111 357999999999999999865
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.17 E-value=4.3e-10 Score=108.22 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=97.1
Q ss_pred eEEEEcCeEeecccchhHH---HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc
Q 017607 110 KVLVLDGIVQLTEKDECAY---QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF 186 (369)
Q Consensus 110 ~~l~lDg~~q~~~~de~~Y---~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~ 186 (369)
..+.+|-.+-+........ .+++... ....++|||+|||+|.++..+++.+ ..+|+++|+|+.+++.|++++
T Consensus 128 ~~i~ldpg~aFgtG~h~tt~l~l~~l~~~----~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPTTSLCLEWLEDL----DLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNA 202 (288)
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHhh----cCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHH
Confidence 4567776665543332211 2222222 2346899999999999999888864 568999999999999999988
Q ss_pred hhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhH
Q 017607 187 PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHL 266 (369)
Q Consensus 187 ~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~ 266 (369)
..... ..++.+..+|.... .+++||+|+++... .. ...++..+.+.|+|||.+++..- . ...
T Consensus 203 ~~n~~---~~~~~~~~~~~~~~----~~~~fDlVvan~~~-----~~--l~~ll~~~~~~LkpgG~li~sgi---~-~~~ 264 (288)
T TIGR00406 203 ELNQV---SDRLQVKLIYLEQP----IEGKADVIVANILA-----EV--IKELYPQFSRLVKPGGWLILSGI---L-ETQ 264 (288)
T ss_pred HHcCC---CcceEEEecccccc----cCCCceEEEEecCH-----HH--HHHHHHHHHHHcCCCcEEEEEeC---c-HhH
Confidence 75532 24577777763322 24689999976531 11 24688999999999999987431 1 223
Q ss_pred HHHHHHHHHHHCC
Q 017607 267 IEDMISICRETFK 279 (369)
Q Consensus 267 ~~~i~~~l~~~F~ 279 (369)
...+.+.+++.|.
T Consensus 265 ~~~v~~~~~~~f~ 277 (288)
T TIGR00406 265 AQSVCDAYEQGFT 277 (288)
T ss_pred HHHHHHHHHccCc
Confidence 3455555555454
No 81
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.17 E-value=1.7e-10 Score=106.42 Aligned_cols=105 Identities=19% Similarity=0.266 Sum_probs=80.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||.|.++..+++.+ .+|+++|++++.++.|+.+..+.. -.+++......+.... .++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHHhc--CCCccEEE
Confidence 46799999999999999999986 799999999999999999876542 2355777777776543 37999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+- +...+.+ --..|++.|.+.+||||+++..+.+
T Consensus 130 cm--EVlEHv~--dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CM--EVLEHVP--DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred Eh--hHHHccC--CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 52 1111100 0245999999999999999976654
No 82
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.16 E-value=2e-10 Score=111.96 Aligned_cols=106 Identities=10% Similarity=0.111 Sum_probs=79.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||+|..+..+++. ..+|++||+++++++.|+++..... ...+++++.+|+.++.. .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~---~~~~i~~~~~dae~l~~--~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDP---VTSTIEYLCTTAEKLAD--EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC---cccceeEEecCHHHhhh--ccCCCCEEE
Confidence 3468999999999999988875 3689999999999999998754321 12479999999877532 246899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
+-.. ...... ...|++.++++|||||.+++...
T Consensus 204 ~~~v--LeHv~d--~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEV--IEHVAN--PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhH--HHhcCC--HHHHHHHHHHHcCCCcEEEEEEC
Confidence 6321 111111 24799999999999999987643
No 83
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.16 E-value=1.5e-09 Score=99.03 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=94.1
Q ss_pred EEEEEecCceeEEEEcCeEeecccc-hhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHH
Q 017607 100 VLVFESLAYGKVLVLDGIVQLTEKD-ECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMV 178 (369)
Q Consensus 100 I~v~~~~~~G~~l~lDg~~q~~~~d-e~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~v 178 (369)
+.|.-....|+.|..-..... ++. +..+..++..+.. .....+|||+|||+|.++.+++... ..+|++||+++.+
T Consensus 13 mrIi~g~~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a 88 (199)
T PRK10909 13 IRIIGGQWRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAV 88 (199)
T ss_pred EEEEeeccCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHH
Confidence 666655556766654111001 222 1222333333321 1245699999999999999865543 4699999999999
Q ss_pred HHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHh--ccCCceEEec
Q 017607 179 IDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCNM 256 (369)
Q Consensus 179 i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~--LkpgGilv~~ 256 (369)
++.+++++..++. .+++++.+|+.+++... .++||+|++|.+...+. ..+.++.+.+. |+|+|++++.
T Consensus 89 ~~~a~~Nl~~~~~----~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 89 AQQLIKNLATLKA----GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGL-----LEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHHHHHHHhCC----CcEEEEEchHHHHHhhc-CCCceEEEECCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEEE
Confidence 9999999876632 37999999999987542 34799999887632221 23445555553 7889988875
Q ss_pred c
Q 017607 257 A 257 (369)
Q Consensus 257 ~ 257 (369)
.
T Consensus 159 ~ 159 (199)
T PRK10909 159 S 159 (199)
T ss_pred e
Confidence 4
No 84
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.15 E-value=2.4e-10 Score=102.70 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=88.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+.-.++|++|||.|.++..|+.+. .+++++|+++..++.||+.+... ++|++++.|..++. ++++||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~------~~V~~~~~dvp~~~---P~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL------PHVEWIQADVPEFW---PEGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC------CCeEEEECcCCCCC---CCCCeeEE
Confidence 344689999999999999999885 68999999999999999998753 78999999987764 46799999
Q ss_pred EEcCCCCCCCccc-cccHHHHHHHHHhccCCceEEecc-----cccchhhhHHHHHHHHHHHHCC
Q 017607 221 IVDSSDPVGPAQE-LVEKPFFDTIAKALRPGGVLCNMA-----ESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 221 i~D~~~p~~~~~~-L~~~ef~~~~~~~LkpgGilv~~~-----~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
++.-. .+.... ---..+++.+.+.|+|||.+|+-+ ...|.+....+.+...+++.|.
T Consensus 111 V~SEV--lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 111 VLSEV--LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EEehH--hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 96422 221110 012347889999999999998632 2336666677788888888887
No 85
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=9.4e-11 Score=112.80 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=101.3
Q ss_pred EEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc
Q 017607 111 VLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA 190 (369)
Q Consensus 111 ~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~ 190 (369)
.+.+|-.+-+.......-+-+|..+... ..+.++|||+|||+|.++...++.+ ..+|+++||||..++.|++|...++
T Consensus 131 ~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~ 208 (295)
T PF06325_consen 131 VIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNG 208 (295)
T ss_dssp EEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT
T ss_pred EEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcC
Confidence 5677766666554433322222222222 2356799999999999999999885 5789999999999999999987764
Q ss_pred CCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHH
Q 017607 191 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDM 270 (369)
Q Consensus 191 ~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i 270 (369)
. .+ ++.+. ...+ ...++||+|+.+.... .| ......+.++|+|||.+++.. .... ....+
T Consensus 209 ~--~~-~~~v~--~~~~----~~~~~~dlvvANI~~~-----vL--~~l~~~~~~~l~~~G~lIlSG---Il~~-~~~~v 268 (295)
T PF06325_consen 209 V--ED-RIEVS--LSED----LVEGKFDLVVANILAD-----VL--LELAPDIASLLKPGGYLILSG---ILEE-QEDEV 268 (295)
T ss_dssp ---TT-CEEES--CTSC----TCCS-EEEEEEES-HH-----HH--HHHHHHCHHHEEEEEEEEEEE---EEGG-GHHHH
T ss_pred C--Ce-eEEEE--Eecc----cccccCCEEEECCCHH-----HH--HHHHHHHHHhhCCCCEEEEcc---ccHH-HHHHH
Confidence 3 33 66653 1111 2237899999776421 11 346778899999999999743 2222 23455
Q ss_pred HHHHHHHCCCCeeEEEEEEeeccCCcEEEEEeec
Q 017607 271 ISICRETFKGSVHYAWASVPTYPSGIIGFLICST 304 (369)
Q Consensus 271 ~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ask 304 (369)
.+.+++-|. ....-. .|.|..+++.|
T Consensus 269 ~~a~~~g~~------~~~~~~--~~~W~~l~~~K 294 (295)
T PF06325_consen 269 IEAYKQGFE------LVEERE--EGEWVALVFKK 294 (295)
T ss_dssp HHHHHTTEE------EEEEEE--ETTEEEEEEEE
T ss_pred HHHHHCCCE------EEEEEE--ECCEEEEEEEe
Confidence 555543222 222222 36787777665
No 86
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.15 E-value=4.2e-10 Score=107.03 Aligned_cols=106 Identities=18% Similarity=0.265 Sum_probs=80.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
+...+|||||||+|..+..+++. .+..+|+++|+++.+++.|+++..... -++++++.+|+.+. ..++++||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~l--~~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEAL--PVADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhhC--CCCCCceeE
Confidence 45679999999999988877765 344589999999999999999876542 24789999997653 223568999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|+++......+. ....++++.++|+|||.+++.
T Consensus 150 Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 997654322221 246899999999999999863
No 87
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.14 E-value=3.1e-10 Score=103.01 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=75.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++.....+ -++++...|...+ .. +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~-~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--AL-NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cc-cCCCCEEE
Confidence 46799999999999999999864 589999999999999988765431 2367777776543 12 35799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+.......+.. ....+++.++++|+|||.+++
T Consensus 100 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQAG--RVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 65432211111 235789999999999998543
No 88
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.14 E-value=3.7e-10 Score=106.12 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++.+|||||||+|.++..+++.. .+|+++|+++.+++.++++.+ ...++.+|+... ..++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~--~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESL--PLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccC--cCCCCcEEEEE
Confidence 46799999999999999888753 689999999999999998753 246788887664 23356899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+.....+... ...++.++.++|+|||.+++..
T Consensus 109 s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQWCGN----LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhhhcCC----HHHHHHHHHHHcCCCeEEEEEe
Confidence 7654433221 2468999999999999998643
No 89
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.13 E-value=4.5e-10 Score=120.32 Aligned_cols=113 Identities=16% Similarity=0.255 Sum_probs=88.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+.++|||+|||+|+++..+++.. ..+|++||+|+.+++.|++++..++ ++..+++++.+|++++++.. .++||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNG--LSGRQHRLIQADCLAWLKEA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC--CCccceEEEEccHHHHHHHc-CCCcCEEE
Confidence 46899999999999999999863 5689999999999999999987663 33358999999999998765 46899999
Q ss_pred EcCCCCCCCcc--c-----cccHHHHHHHHHhccCCceEEeccc
Q 017607 222 VDSSDPVGPAQ--E-----LVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 222 ~D~~~p~~~~~--~-----L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
+|.+.-..... . -...++++.+.++|+|||++++.+.
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 98653211100 0 1134678888999999999987544
No 90
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.12 E-value=3.1e-10 Score=104.19 Aligned_cols=112 Identities=23% Similarity=0.325 Sum_probs=82.7
Q ss_pred HHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 127 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 127 ~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
.+-.|+.++.+ .+..+||+||+|+|..+..+++. .+..+|++||+++.+++.|++++.... ..+++++.+|+
T Consensus 60 ~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-G
T ss_pred HHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcch
Confidence 44666666553 45679999999999999998886 345579999999999999999998763 24899999999
Q ss_pred HHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..-+.. ...||.|++...-+.- -..+.+.|++||+|++..
T Consensus 133 ~~g~~~--~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPE--EAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGG--G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred hhcccc--CCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEE
Confidence 876654 3579999987654322 235667899999999743
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.12 E-value=8.3e-10 Score=101.43 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH--H----hhCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--L----RQVP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~--l----~~~~ 213 (369)
++..+|||||||+|..+..+++.. +..+|++||+++. . + .++++++++|+.+. + ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~--~-------~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------D--P-------IVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------c--C-------CCCcEEEecCCCChHHHHHHHHHhC
Confidence 356799999999999999998874 3468999999981 0 1 24689999998763 1 2234
Q ss_pred CCCccEEEEcCCCCCCC-c--ccc----ccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCee
Q 017607 214 RGKYDAIIVDSSDPVGP-A--QEL----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVH 283 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~-~--~~L----~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~ 283 (369)
+++||+|++|....+.. . ... ....+++.+.++|+|||.+++-. +..+.+.+++..++..|. .+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l~~~f~-~v~ 186 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREIRSLFT-KVK 186 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHHHhCce-EEE
Confidence 56899999886432211 1 000 12468899999999999998732 223455667788888887 444
No 92
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.12 E-value=1e-09 Score=107.58 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||+|.++..+++..+..+|+++|+++.+++.|+++.+ ..+++++.+|+.+. ..++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~l--p~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDL--PFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhC--CCCCCceeEEE
Confidence 4569999999999999999887555799999999999999998754 24688999998764 22356899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+...-...+. ....++++++.|+|||.+++.
T Consensus 184 s~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 7433222121 245899999999999998753
No 93
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=6.7e-10 Score=113.89 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=80.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|+++.... ..+++++.+|+... ..++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~--~~~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKK--TYPDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccC--CCCCCCEEEE
Confidence 356799999999999999998875 458999999999999999875432 35799999997653 2234689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
++...-...+ -...+++.++++|+|||.+++.
T Consensus 337 ~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 337 YSRDTILHIQ----DKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EECCcccccC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 9743221111 1357899999999999998864
No 94
>PLN02672 methionine S-methyltransferase
Probab=99.09 E-value=1.4e-09 Score=119.62 Aligned_cols=149 Identities=15% Similarity=0.063 Sum_probs=104.3
Q ss_pred ceeEEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhch
Q 017607 108 YGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 187 (369)
Q Consensus 108 ~G~~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~ 187 (369)
+|..|.++..+.+++++....-+.+...+.. ...+.+|||||||+|.++..+++..+..+|+++|||+++++.|+++..
T Consensus 85 ~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 85 KKLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred cCCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 6778888988899888854443333322110 012468999999999999999988766799999999999999999986
Q ss_pred hhcCC------------CCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCC-----C------------------Ccc
Q 017607 188 ELAVG------------FEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPV-----G------------------PAQ 232 (369)
Q Consensus 188 ~~~~~------------~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~-----~------------------~~~ 232 (369)
.+... ....|++++.+|..+.+... ..+||+||++.+--. . +..
T Consensus 164 ~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~ 242 (1082)
T PLN02672 164 LNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYC 242 (1082)
T ss_pred HcCcccccccccccccccccccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccc
Confidence 54210 00147999999998876432 236999997654100 0 001
Q ss_pred ccc-----------cHHHHHHHHHhccCCceEEeccc
Q 017607 233 ELV-----------EKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 233 ~L~-----------~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
.|+ .+.+++.+.+.|+|||.+++..+
T Consensus 243 AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 243 ALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 121 15677788889999999998664
No 95
>PRK06922 hypothetical protein; Provisional
Probab=99.09 E-value=4.9e-10 Score=116.82 Aligned_cols=111 Identities=23% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||||||+|..+..+++..+..+++++|+++.+++.|++..... ..+++++.+|+.+.-...++++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999999988767789999999999999999876432 346889999988742223457899999
Q ss_pred EcCCCCCC----C-c----cccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVG----P-A----QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~----~-~----~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+....+.. + . ..-....+++.++++|||||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 65322110 0 0 01123578999999999999998753
No 96
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-09 Score=104.86 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=88.2
Q ss_pred EEEEcCeEeecccchhHH---HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhch
Q 017607 111 VLVLDGIVQLTEKDECAY---QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 187 (369)
Q Consensus 111 ~l~lDg~~q~~~~de~~Y---~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~ 187 (369)
.+.||-.+-+.......- -+++.... .++++|||+|||+|.++...++.+ .++|.++||||..++.|+++..
T Consensus 132 ~i~lDPGlAFGTG~HpTT~lcL~~Le~~~----~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 132 NIELDPGLAFGTGTHPTTSLCLEALEKLL----KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred EEEEccccccCCCCChhHHHHHHHHHHhh----cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHH
Confidence 466776665544332221 33333332 378899999999999999999985 5789999999999999999987
Q ss_pred hhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 188 ELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 188 ~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.++. ++.++.-..+..... ..++||+|+.+.-. .. -..+...+++.|+|||.++...
T Consensus 207 ~N~v---~~~~~~~~~~~~~~~---~~~~~DvIVANILA-----~v--l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 207 LNGV---ELLVQAKGFLLLEVP---ENGPFDVIVANILA-----EV--LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred HcCC---chhhhcccccchhhc---ccCcccEEEehhhH-----HH--HHHHHHHHHHHcCCCceEEEEe
Confidence 7643 112233333333332 23589999976521 11 1357889999999999999743
No 97
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.6e-09 Score=96.48 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=82.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+.++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++...+. .+.++.++.+|..+.+ .+++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI--RNNGVEVIRSDLFEPF---RGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC--CCcceEEEeccccccc---cccCceEE
Confidence 35678999999999999999988 37899999999999999998765422 2223889999977644 23479999
Q ss_pred EEcCCCCCCCcc-----------------ccccHHHHHHHHHhccCCceEEecccc
Q 017607 221 IVDSSDPVGPAQ-----------------ELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 221 i~D~~~p~~~~~-----------------~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+++.+.....+. ......+++.+.++|+|||.+++...+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 976532110000 011246899999999999988765443
No 98
>PRK08317 hypothetical protein; Provisional
Probab=99.08 E-value=1.6e-09 Score=99.69 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=80.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
..+.+|||||||+|..+..++++. +..+++++|+++.+++.++++... ..++++++.+|+.... ..+++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~--~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP--FPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC--CCCCCceE
Confidence 456799999999999999999875 567999999999999999987322 1467999999976532 23468999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|++...-..... ...+++.+.++|+|||.+++.
T Consensus 91 v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 91 VRSDRVLQHLED----PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred EEEechhhccCC----HHHHHHHHHHHhcCCcEEEEE
Confidence 997543211111 256899999999999998764
No 99
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.07 E-value=6.7e-10 Score=106.78 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||||||+|..+..+++.. .+|+++|+|+.+++.++++.... ..++++...|+.... . +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--I-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--c-cCCccEEE
Confidence 46799999999999999999864 58999999999999999887654 236888888876542 2 46899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+......-... ....+++.+.++|+|||++++
T Consensus 190 ~~~vl~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 75432211111 134689999999999998554
No 100
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.07 E-value=8.3e-10 Score=105.27 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCC---cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSV---ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~---~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
...+|||||||+|..+..+++..+. .+++++|+++.+++.|++.. +++++.++|+.+. ..++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~l--p~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRL--PFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccC--CCcCCcee
Confidence 4568999999999999999876432 37999999999999998764 4688899997764 23357899
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+|+.-.. ..++++++|+|+|||.+++....
T Consensus 154 ~I~~~~~-----------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA-----------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC-----------CCCHHHHHhhccCCCEEEEEeCC
Confidence 9995321 12467889999999999875533
No 101
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.05 E-value=1.3e-09 Score=96.27 Aligned_cols=111 Identities=21% Similarity=0.443 Sum_probs=78.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..+|||+|||.|.+++.|++..-....++||.++..+++|+...... +++ ..+++.+.|...- +...++||+|+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~-n~I~f~q~DI~~~--~~~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFS-NEIRFQQLDITDP--DFLSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCC-cceeEEEeeccCC--cccccceeEEe
Confidence 344999999999999999998743345999999999999987654433 232 3499999998764 22246788777
Q ss_pred ----EcCC--CCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 222 ----VDSS--DPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 222 ----~D~~--~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.|+- .|..+...+ .-++..+.+.|+|||++++-+.+
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 2211 122332222 23677888999999999987665
No 102
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.04 E-value=1.7e-09 Score=106.01 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=83.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
++..+|||+|||+|+++.+++... .+++++|+|+.+++.+++++...+. .+++++.+|+.+.- ..+++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~~g~----~~i~~~~~D~~~l~--~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEHYGI----EDFFVKRGDATKLP--LSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHHhCC----CCCeEEecchhcCC--cccCCCCEE
Confidence 456689999999999999977653 6899999999999999999876522 23889999988742 224689999
Q ss_pred EEcCCCCCCCc--cc---cccHHHHHHHHHhccCCceEEeccc
Q 017607 221 IVDSSDPVGPA--QE---LVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~D~~~p~~~~--~~---L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
++|.+-..... .. -...++++.+++.|+|||.+++...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 98865322111 11 1246799999999999999887543
No 103
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.04 E-value=2.7e-09 Score=100.20 Aligned_cols=121 Identities=23% Similarity=0.413 Sum_probs=89.3
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH-HHhhCCCCCc
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE-FLRQVPRGKY 217 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~-~l~~~~~~~f 217 (369)
..+..+||+.|.|+|.++..+++. .+..+|...|+.++.++.|+++|...+. ..++++.+.|..+ -.....+..+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---DDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC---CTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC---CCCceeEecceecccccccccCcc
Confidence 346789999999999999999985 5667999999999999999999987643 4589999999853 2221113579
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhc-cCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKAL-RPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~L-kpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
|+|++|+++||. .+..+.++| ++||.+++.+.+. .........|++
T Consensus 115 DavfLDlp~Pw~---------~i~~~~~~L~~~gG~i~~fsP~i----eQv~~~~~~L~~ 161 (247)
T PF08704_consen 115 DAVFLDLPDPWE---------AIPHAKRALKKPGGRICCFSPCI----EQVQKTVEALRE 161 (247)
T ss_dssp EEEEEESSSGGG---------GHHHHHHHE-EEEEEEEEEESSH----HHHHHHHHHHHH
T ss_pred cEEEEeCCCHHH---------HHHHHHHHHhcCCceEEEECCCH----HHHHHHHHHHHH
Confidence 999999999874 377899999 8999999866442 234455555655
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=1.8e-09 Score=102.27 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=85.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||+|||+|.++..++++.+..+|++||+++.+++.+++++ ++++++.+|++++.. +++||+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc---cCCCcEEE
Confidence 356899999999999999888754579999999999999999864 368899999998752 35899999
Q ss_pred EcCCCCCCCc---cc--cc-----------cHHHHHHHHHhccCCceEE-ecccccchhhhHHHHHH
Q 017607 222 VDSSDPVGPA---QE--LV-----------EKPFFDTIAKALRPGGVLC-NMAESMWLHTHLIEDMI 271 (369)
Q Consensus 222 ~D~~~p~~~~---~~--L~-----------~~ef~~~~~~~LkpgGilv-~~~~s~~~~~~~~~~i~ 271 (369)
++.+-..... .. -+ -..+++.+...|+|+|.+. .....++++..+-..-+
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y 198 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY 198 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH
Confidence 8765432111 11 11 1468888899999999664 34445665554444433
No 105
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=3.1e-09 Score=107.76 Aligned_cols=116 Identities=19% Similarity=0.274 Sum_probs=86.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++...+ .+++++.+|+.+......+++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence 35679999999999999999987544689999999999999999987652 2478999998764322224679999
Q ss_pred EEcCCCC-CCC----ccc-------------cccHHHHHHHHHhccCCceEEecccccc
Q 017607 221 IVDSSDP-VGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 221 i~D~~~p-~~~----~~~-------------L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
++|.+.. .+. +.. -....+++.+.+.|+|||.++..+.+..
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9997542 111 000 0124689999999999999997665544
No 106
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.03 E-value=2.4e-09 Score=98.83 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=81.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+..+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++..... ..+++++.+|+.+.. ...++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~--~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL---SGNVEFVQGDAEALP--FPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc---ccCeEEEecccccCC--CCCCCccEE
Confidence 457999999999999999988764 57999999999999999998764211 357899999987643 234689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
++........ ....+++.+.+.|+|||.+++
T Consensus 126 ~~~~~l~~~~----~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 126 TIAFGLRNVP----DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEecccccCC----CHHHHHHHHHHhccCCcEEEE
Confidence 8643321111 135689999999999998875
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.03 E-value=1.8e-09 Score=107.93 Aligned_cols=101 Identities=21% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||||||+|.++..++++.+ .+|+++|+++++++.|+++... ..+++...|..+. +++||+|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l-----~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL-----NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc-----CCCCCEE
Confidence 3567999999999999999998753 5899999999999999997642 2488888997653 3589999
Q ss_pred EEcC-CCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~-~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++-. ....+. -....+++.+.++|+|||.++++.
T Consensus 233 vs~~~~ehvg~---~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGP---KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCCh---HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 8532 111111 112478999999999999998764
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.03 E-value=3.6e-09 Score=96.82 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=70.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+++.+|||||||+|..+..+++..+..+++++|+++.+++.|+++++ +++++.+|+.+. .++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~~---~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFDP---FKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccCC---CCCCCEEEE
Confidence 46779999999999999999887556799999999999999998753 467888887762 235789999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhcc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALR 248 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~Lk 248 (369)
++...-..-++. .-..+++++.++++
T Consensus 110 ~~~~vL~hl~p~--~~~~~l~el~r~~~ 135 (204)
T TIGR03587 110 LTKGVLIHINPD--NLPTAYRELYRCSN 135 (204)
T ss_pred EECChhhhCCHH--HHHHHHHHHHhhcC
Confidence 975432111111 12467888888873
No 109
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.03 E-value=3.2e-09 Score=98.44 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=82.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCC------cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSV------ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG 215 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~------~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~ 215 (369)
+..+|||++||+|-++.-++++-+. .+|+++||+|+|+.++++...+. .-.+++++.++.+||.+. ..+++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~L--pFdd~ 176 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDL--PFDDD 176 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccC--CCCCC
Confidence 4569999999999999999998655 79999999999999999976331 112456799999999875 35678
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+||...+...--..+ --...+++++|+|||||++.+
T Consensus 177 s~D~yTiafGIRN~t----h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT----HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred cceeEEEecceecCC----CHHHHHHHHHHhcCCCcEEEE
Confidence 999887643211111 124579999999999999874
No 110
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.02 E-value=3.9e-09 Score=95.06 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=81.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH-----H-hhCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF-----L-RQVP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-----l-~~~~ 213 (369)
+...+|||||||+|.++..+++.. +..+|+++|+++.+ . .++++++.+|..+. + +..+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456799999999999999888764 45689999999864 1 13578888887542 1 1233
Q ss_pred CCCccEEEEcCCCCC-CC--cccc----ccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 214 RGKYDAIIVDSSDPV-GP--AQEL----VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~-~~--~~~L----~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
.++||+|++|.+.+. +. ...+ ....+++.+.++|+|||.+++.. .....+..++..++..|.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~~~~~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----FQGEEIDEYLNELRKLFE 164 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----ccCccHHHHHHHHHhhhc
Confidence 468999998765321 11 1111 12468999999999999998753 223344566677777675
No 111
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.01 E-value=6.3e-09 Score=95.01 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=81.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSV-ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~-~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
..+.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++. . ..+++++.+|+.+.. .++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-----~~~i~~~~~d~~~~~--~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-----PLNIEFIQADAEALP--FEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-----CCCceEEecchhcCC--CCCCcEEE
Confidence 35679999999999999999987654 689999999999999998875 2 357899999987753 23468999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|++..... ... ....+++.+.+.|+|||.+++.
T Consensus 110 i~~~~~~~--~~~--~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 110 VTIAFGLR--NVT--DIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred EEEeeeeC--Ccc--cHHHHHHHHHHHcCCCcEEEEE
Confidence 98643221 111 1346899999999999998863
No 112
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=4.3e-09 Score=107.25 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=87.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+..+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++...+. .+++++.+|+.++..... ++||+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~----~~v~~~~~D~~~~~~~~~-~~fD~ 323 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL----TNIETKALDARKVHEKFA-EKFDK 323 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeCCcccccchhc-ccCCE
Confidence 345789999999999999998863 456999999999999999999876532 349999999987643332 57999
Q ss_pred EEEcCCCC-CCC----c--------ccc-----ccHHHHHHHHHhccCCceEEecccccc
Q 017607 220 IIVDSSDP-VGP----A--------QEL-----VEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 220 Ii~D~~~p-~~~----~--------~~L-----~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
|++|.+.. .+. + ..+ ...++++.+.+.|+|||.++..+.+.+
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 99997531 110 0 000 124689999999999999997655543
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.01 E-value=2.3e-09 Score=98.32 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
....+|||||||+|..+..+++.. .+|+++|+++.+++.+++++...+. .+++++.+|+.+.+.. .++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~----~~v~~~~~d~~~~~~~--~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGL----HNVSVRHGDGWKGWPA--YAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCC----CceEEEECCcccCCCc--CCCcCEE
Confidence 356799999999999998877764 4899999999999999999876522 3599999998654322 3689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++...+ .+.+.+.+.|+|||.+++..
T Consensus 149 ~~~~~~~----------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP----------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch----------hhhHHHHHhcCCCcEEEEEE
Confidence 9875321 12346778999999998743
No 114
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.01 E-value=2.9e-09 Score=101.99 Aligned_cols=132 Identities=20% Similarity=0.287 Sum_probs=91.5
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDvI 220 (369)
..++||++=|=+|+.+...++. +..+|+.||+|..+++.+++++..++ ++..+++++.+|++++++.. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg--~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNG--LDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 4689999999999999988775 46789999999999999999988763 45568999999999998642 24689999
Q ss_pred EEcCCCCCCCcccc--ccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 221 IVDSSDPVGPAQEL--VEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 221 i~D~~~p~~~~~~L--~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
|+|++.-......+ -..+.+..+.+.|+|||++++.+.++....+.+.++++....
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 99976422111111 123567788899999999988777777666655554444333
No 115
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.01 E-value=2e-09 Score=104.19 Aligned_cols=106 Identities=21% Similarity=0.176 Sum_probs=80.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||||||+|..+.+++++.|..+++++|+ +.+++.+++++...+. ..|++++.+|+++. .. ..+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl---~~rv~~~~~d~~~~--~~--~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV---ADRMRGIAVDIYKE--SY--PEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc---cceEEEEecCccCC--CC--CCCCEE
Confidence 3557999999999999999999877789999998 7899999998765532 35899999998753 22 247998
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
++......... -....++++++++|+|||.+++.
T Consensus 220 ~~~~~lh~~~~--~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 220 LFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EeEhhhhcCCh--HHHHHHHHHHHHhcCCCCEEEEE
Confidence 85432221111 11246899999999999999764
No 116
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=9.5e-09 Score=104.73 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=86.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+..+|||+|||+|+.+..+++.. ...+|+++|+++.+++.+++++...+. .+++++.+|+..+. ++++||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~v~~~~~Da~~~~---~~~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----TIIETIEGDARSFS---PEEQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC----CeEEEEeCcccccc---cCCCCCE
Confidence 345799999999999998888753 345899999999999999999876532 36999999998764 2457999
Q ss_pred EEEcCCCC-CCC----cc--------cc-----ccHHHHHHHHHhccCCceEEecccccc
Q 017607 220 IIVDSSDP-VGP----AQ--------EL-----VEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 220 Ii~D~~~p-~~~----~~--------~L-----~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
|++|.+.. .+. +. .+ ....++..+.+.|+|||+++..+.+..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99996531 111 00 00 124689999999999999998776654
No 117
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.00 E-value=6.6e-10 Score=103.37 Aligned_cols=104 Identities=18% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCC---CEEEEEcchHHHHhhCCCCCccE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDP---RVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~---rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.++|||+|||+|.++..|++.. ++|+++|+++++++.|+++ .......+.+ ++++...|+... .++||+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGL-----TGKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhc-----ccccce
Confidence 4689999999999999999996 7999999999999999998 3331111111 466677775543 356999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
|++- ....... .-.+|++.+.+.|+|||.+.+.+.
T Consensus 162 Vvcs--evleHV~--dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 162 VVCS--EVLEHVK--DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eeeH--HHHHHHh--CHHHHHHHHHHHhCCCCceEeeeh
Confidence 9952 2111110 125799999999999999887543
No 118
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.00 E-value=8.8e-09 Score=97.92 Aligned_cols=131 Identities=25% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.++.+|||+|||.|+.+..++... +...|+++|+++..++.+++++...+. .+++++..|+..+... .++||+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~----~~v~~~~~D~~~~~~~--~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV----LNVAVTNFDGRVFGAA--VPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----CcEEEecCCHHHhhhh--ccCCCE
Confidence 345789999999999999988753 235899999999999999999876632 4699999999876432 346999
Q ss_pred EEEcCCCCC-CC----cc--------c-----cccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 220 IIVDSSDPV-GP----AQ--------E-----LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 220 Ii~D~~~p~-~~----~~--------~-----L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
|++|.+... +. +. . ....++++.+.+.|+|||+++..+.+.. +..-..+++.+-+.++
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~--~~Ene~vv~~~l~~~~ 219 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE--PEENEAVVDYLLEKRP 219 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hHHHHHHHHHHHHhCC
Confidence 999975421 10 00 0 1235689999999999999987655532 2223445555555554
No 119
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.99 E-value=6.8e-09 Score=93.93 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=81.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC--CCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--RGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDv 219 (369)
...+|||++||+|.++.+++... ..+|++||+|+.+++.+++++...+. ..+++++.+|+.++++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEehhHHHHHHHhhccCCCceE
Confidence 45789999999999999999885 45899999999999999999876632 2479999999988876431 224899
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHH--hccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAK--ALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~--~LkpgGilv~~~ 257 (369)
|+.|++.... ...+.++.+.+ .|+++|++++..
T Consensus 125 v~~DPPy~~~-----~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFNG-----ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCCC-----cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 9987654321 12344555544 689999998754
No 120
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.98 E-value=7.9e-09 Score=100.82 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=77.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
++..+|||||||+|.++..+++..+ ..+|+++|+++++++.|++++...+ -.+++++.+|+.+.+.. .+.||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~--~~~fD~ 152 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE--FAPYDV 152 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc--cCCccE
Confidence 3457999999999999999998653 2479999999999999999887652 24699999998876543 257999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+++...+ +....+.+.|+|||.+++..
T Consensus 153 Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 99864321 12345678999999988743
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=6.4e-09 Score=81.29 Aligned_cols=103 Identities=23% Similarity=0.307 Sum_probs=78.5
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcC
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 224 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 224 (369)
+|||+|||.|..+..+++ ....+++++|+++..++.+++..... ...+++++.+|..++.. ....+||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999999999988 45679999999999999998532211 24679999999988754 1246799999866
Q ss_pred CCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 225 SDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 225 ~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..... .-....+++.+.+.|+|+|.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43221 112467899999999999999864
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.96 E-value=4.9e-09 Score=92.81 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||+|.++.++++. ..++++||+|+.+++.+++++.. .++++++.+|+.++.. ++.+||.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~--~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL--PKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc--cccCCCEEE
Confidence 4568999999999999999987 36899999999999999998753 3589999999988732 234699999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHh--ccCCceEEeccc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKA--LRPGGVLCNMAE 258 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~--LkpgGilv~~~~ 258 (369)
.+.+- .. +.+.+..+.+. +.++|++++|.+
T Consensus 83 ~n~Py--~~-----~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 83 GNLPY--NI-----STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECCCc--cc-----HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 76542 22 12344444433 448888888754
No 123
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.96 E-value=9.4e-09 Score=100.50 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=80.9
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 126 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 126 ~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
..|...+.+++.. .+++|||||||+|..+..+++..+ ..|+++|+++.++..++..-.... .+.+++++.+|+
T Consensus 109 ~k~~~l~~~l~~l---~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~ 181 (322)
T PRK15068 109 WKWDRVLPHLSPL---KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGI 181 (322)
T ss_pred hHHHHHHHhhCCC---CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCH
Confidence 3455555565422 467999999999999999998853 479999999998865432111110 145799999998
Q ss_pred HHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.+.- . +++||+|++-.. .+... -...+++.+++.|+|||.+++.
T Consensus 182 e~lp--~-~~~FD~V~s~~v--l~H~~--dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 182 EQLP--A-LKAFDTVFSMGV--LYHRR--SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHCC--C-cCCcCEEEECCh--hhccC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 7652 2 468999996322 11111 1246899999999999999864
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=98.95 E-value=4.6e-09 Score=97.49 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC---CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD---SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~---~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
.+.+|||+|||+|.++..+++.. +..+|++||||+.+++.|++++ ++++++.+|+..+. . +++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~-~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--F-DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--c-cCCcc
Confidence 35799999999999999988752 2458999999999999999875 35789999987642 2 35899
Q ss_pred EEEEcCCCCCCC-c-------cccccHHHHHHHHHhccCCceEEe
Q 017607 219 AIIVDSSDPVGP-A-------QELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 219 vIi~D~~~p~~~-~-------~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+||++.+-.... . ..++...+++.+.+++++|+. ++
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 999876542111 1 123456688888886666555 43
No 125
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=3.4e-08 Score=94.59 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHh-hCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR-QVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~-~~~~~~fD 218 (369)
.+..+|||+|||+|.++..+++.- +..+|++||+++.+.+...+.... .+++..+++|+..... ....+++|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhhcccCCCC
Confidence 455799999999999999999874 345899999998765433332221 2578999999864211 11235799
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec--ccccchh---hhHHHHHHHHHHHH-CCCCeeEEEEEEeec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM--AESMWLH---THLIEDMISICRET-FKGSVHYAWASVPTY 292 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~--~~s~~~~---~~~~~~i~~~l~~~-F~~~v~~~~~~vP~~ 292 (369)
+|++|...|.. ...+..++.+.|||||.|++. ..+.... ...+.+-.+.+++. |. .+.. ..++-|
T Consensus 205 vV~~Dva~pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~-~~e~--v~L~Py 275 (293)
T PTZ00146 205 VIFADVAQPDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK-PKEQ--LTLEPF 275 (293)
T ss_pred EEEEeCCCcch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc-eEEE--EecCCc
Confidence 99999864332 234566889999999998862 2222221 12233434677776 77 3332 334445
Q ss_pred cCCcEEEEEeec
Q 017607 293 PSGIIGFLICST 304 (369)
Q Consensus 293 p~g~w~f~~ask 304 (369)
... ..++++..
T Consensus 276 ~~~-h~~v~~~~ 286 (293)
T PTZ00146 276 ERD-HAVVIGVY 286 (293)
T ss_pred cCC-cEEEEEEE
Confidence 333 33444443
No 126
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.95 E-value=8.3e-09 Score=95.01 Aligned_cols=102 Identities=16% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||+|.++..+++.. .+|+++|+|+.+++.|+++++.... ..++++..+|+... + ++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~~~---~~~i~~~~~d~~~~----~-~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGRDV---AGNVEFEVNDLLSL----C-GEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEECChhhC----C-CCcCEEE
Confidence 56799999999999999998863 5899999999999999998764311 24799999997653 2 6899998
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+-..-...+... ...+++.+.+.+++++++..
T Consensus 125 ~~~~l~~~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHYPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhCCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 532111111111 24578888888887766664
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1.4e-08 Score=103.12 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=86.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.++.+|||+|||+|+.+..++... +..+|+++|+++..++.+++++...+. .+++++.+|+..+.... +++||.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~----~~v~~~~~Da~~l~~~~-~~~fD~ 310 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL----SSIEIKIADAERLTEYV-QDTFDR 310 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC----CeEEEEECchhhhhhhh-hccCCE
Confidence 456799999999999999988763 346899999999999999999876532 35899999998753222 357999
Q ss_pred EEEcCCCC-CCC----ccc-------------cccHHHHHHHHHhccCCceEEecccc
Q 017607 220 IIVDSSDP-VGP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p-~~~----~~~-------------L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
|++|.+.- .+. +.. -...+++..+.+.|+|||.++..+.+
T Consensus 311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99997642 121 100 02366789999999999999876665
No 128
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=1.1e-08 Score=103.84 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=84.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
....+|||+|||.|+.+..+++..+..+|+++|+++.+++.+++++...+. . .++.+..+|+.........++||+|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--T-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--C-eEEEEeccccccccccccccccCEE
Confidence 345799999999999999999875557999999999999999999876632 2 2344466776543211124579999
Q ss_pred EEcCCCC-CCC----cccc-------------ccHHHHHHHHHhccCCceEEecccccc
Q 017607 221 IVDSSDP-VGP----AQEL-------------VEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 221 i~D~~~p-~~~----~~~L-------------~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
++|++.. .+. +... ...++++.+.+.|+|||.++..+.+..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9996532 121 1100 135789999999999999998766543
No 129
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.94 E-value=3.4e-09 Score=108.68 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=78.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..+|||||||+|..+..+++.. .+|+++|+++.+++.+++.... .++++++.+|+.......++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999999874 5899999999999987764321 357999999986432123457899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+..+-...+.. -..++++.+++.|+|||++++.
T Consensus 109 ~~~~l~~l~~~--~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDK--EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 75432221111 1257899999999999999763
No 130
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.93 E-value=9.4e-09 Score=99.55 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=77.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC---CC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR---GK 216 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~---~~ 216 (369)
+.+.+|||+|||+|..++.+++..+ ..+++++|+|++|++.|++.+... +..-++..+++|..+.+.-... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3557899999999999999998753 468999999999999999886532 1123567789998765422111 12
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..+++++++....+.. ....+++.++++|+|||.+++-.
T Consensus 139 ~~~~~~gs~~~~~~~~--e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPE--EAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHH--HHHHHHHHHHHhcCCCCEEEEec
Confidence 2344444433222221 23579999999999999998644
No 131
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.93 E-value=2.1e-08 Score=93.80 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=109.0
Q ss_pred eeCCCceEEEEEecCcee-EEEEcCeEeecccchhHHHHHHHhc-cccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEE
Q 017607 93 GKSEYQEVLVFESLAYGK-VLVLDGIVQLTEKDECAYQEMIAHL-PLCSIPSPKTVLVVGGGDGGVLREISRHDSVELID 170 (369)
Q Consensus 93 ~~s~~q~I~v~~~~~~G~-~l~lDg~~q~~~~de~~Y~e~l~~~-~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~ 170 (369)
++-|.|+|..-+. ||. .|..---+.+.++..-.+-+++... .-..|-.+..+||+|||+|+++..+++..+...|+
T Consensus 99 ~r~PlQYIlg~~~--F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~ 176 (328)
T KOG2904|consen 99 KRMPLQYILGSQP--FGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVT 176 (328)
T ss_pred hcCChhheeccCc--cCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEE
Confidence 4789999876654 544 4666666677777755555555432 22234456689999999999999999887788999
Q ss_pred EEECCHHHHHHHHhhchhhcCCCCCCCEEEEE----cchHHHHhhCCCCCccEEEEcCCCCCC-------Cccc------
Q 017607 171 ICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI----GDAVEFLRQVPRGKYDAIIVDSSDPVG-------PAQE------ 233 (369)
Q Consensus 171 ~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~----~Da~~~l~~~~~~~fDvIi~D~~~p~~-------~~~~------ 233 (369)
+||.++..+.+|.+|...... ..++.+++ .|...-.. ...+++|+|+++.+--.. +.-.
T Consensus 177 AiD~S~~Ai~La~eN~qr~~l---~g~i~v~~~~me~d~~~~~~-l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~l 252 (328)
T KOG2904|consen 177 AIDVSKAAIKLAKENAQRLKL---SGRIEVIHNIMESDASDEHP-LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKL 252 (328)
T ss_pred EEeccHHHHHHHHHHHHHHhh---cCceEEEecccccccccccc-cccCceeEEecCCCcccccchhhcCchheecCchh
Confidence 999999999999999776533 35777774 44333221 235789999965432100 0000
Q ss_pred ---------cccHHHHHHHHHhccCCceEEeccc
Q 017607 234 ---------LVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 234 ---------L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
.+...++..+.|.|+|||.+.....
T Consensus 253 ALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 253 ALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred hhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1224577889999999999887653
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=1.5e-08 Score=102.96 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=86.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh--CCCCCc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ--VPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~--~~~~~f 217 (369)
.+..+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++...+. .+++++.+|+.++... ...++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~----~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL----KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC----CeEEEEeCChhhcccccccccccC
Confidence 34679999999999999999876 3346899999999999999999876632 3599999999876421 113589
Q ss_pred cEEEEcCCCC-CCC----cccc-------------ccHHHHHHHHHhccCCceEEecccc
Q 017607 218 DAIIVDSSDP-VGP----AQEL-------------VEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 218 DvIi~D~~~p-~~~----~~~L-------------~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
|.|++|.+.. .+. +... ...++++.+.+.|||||.++..+.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999997531 111 1100 1357899999999999999876554
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.92 E-value=5.1e-09 Score=94.67 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=74.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++.++||||||.|..+..|++.+ -.|+++|+++..++.+++..... .-.++....|..++- . ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~-~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--F-PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS----TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--c-cCCcCEEE
Confidence 57899999999999999999985 58999999999999887765443 234889999976652 2 35799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+......-.+. .-..+++.+++.++|||++++
T Consensus 100 st~v~~fL~~~--~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 100 STVVFMFLQRE--LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EESSGGGS-GG--GHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeccCCHH--HHHHHHHHHHhhcCCcEEEEE
Confidence 64332222211 235689999999999999875
No 134
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=8.8e-09 Score=94.82 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=84.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcC---CC-------------------------
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV---GF------------------------- 193 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~---~~------------------------- 193 (369)
.++.+|||||-+|.++..+++++....|.+||||+..|+.|+++++.... ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 57899999999999999999998888999999999999999998765421 00
Q ss_pred ----------CCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCcc--ccccHHHHHHHHHhccCCceEEecccccc
Q 017607 194 ----------EDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQ--ELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 194 ----------~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~--~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
...|..+...| ||. ....+||+|++-+-.-|-..+ .---..||+.+.+.|.|||+||+. ..||
T Consensus 138 t~~~p~n~~f~~~n~vle~~d---fl~-~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE-PQpW 212 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDD---FLD-MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE-PQPW 212 (288)
T ss_pred cccCCcchhcccccEEEecch---hhh-hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc-CCch
Confidence 00112222223 342 224689999965444332211 011257999999999999999974 3466
Q ss_pred hhhhHHHHHH
Q 017607 262 LHTHLIEDMI 271 (369)
Q Consensus 262 ~~~~~~~~i~ 271 (369)
..-.-.++..
T Consensus 213 ksY~kaar~~ 222 (288)
T KOG2899|consen 213 KSYKKAARRS 222 (288)
T ss_pred HHHHHHHHHH
Confidence 5433333333
No 135
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.91 E-value=1.7e-08 Score=98.22 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=78.6
Q ss_pred HHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHH---hhchhhcCCCCCCCEEEEEc
Q 017607 127 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSK---KYFPELAVGFEDPRVRLHIG 203 (369)
Q Consensus 127 ~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar---~~~~~~~~~~~~~rv~v~~~ 203 (369)
.|...+.++.. ...++|||||||+|..+..+++... ..|+++|+++.++..++ ++.. .+.++.+...
T Consensus 109 ~~~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~~ 178 (314)
T TIGR00452 109 KWDRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEPL 178 (314)
T ss_pred HHHHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEEC
Confidence 34555555432 2467999999999999988887753 58999999999986543 2222 1357888888
Q ss_pred chHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 204 DAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 204 Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|..+.- . ..+||+|++...-..... -..+++.++++|+|||.|++.
T Consensus 179 ~ie~lp-~--~~~FD~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 GIEQLH-E--LYAFDTVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CHHHCC-C--CCCcCEEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEE
Confidence 866542 1 247999996432211111 246899999999999999864
No 136
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.91 E-value=4.6e-09 Score=94.56 Aligned_cols=109 Identities=22% Similarity=0.339 Sum_probs=80.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDv 219 (369)
...+|||+-+|+|.++.|.+..+ ..+|+.||.|+..++..++++...+. ..+++++..|+..++... ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~---~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGL---EDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCC---CcceeeeccCHHHHHHhhcccCCCceE
Confidence 56799999999999999988775 67999999999999999999887743 237999999999888654 4578999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHH--HhccCCceEEeccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIA--KALRPGGVLCNMAE 258 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~--~~LkpgGilv~~~~ 258 (369)
|++|++-.... ...+.++.+. ..|+++|++++...
T Consensus 118 IflDPPY~~~~----~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 118 IFLDPPYAKGL----YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEE--STTSCH----HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEECCCcccch----HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 99886542221 1245677766 78999999998654
No 137
>PRK05785 hypothetical protein; Provisional
Probab=98.90 E-value=1.9e-08 Score=93.55 Aligned_cols=91 Identities=11% Similarity=0.101 Sum_probs=69.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||||||+|.+++.+++.. ..+|+++|++++|++.|++.. ..+++|+.+. ..++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~l--p~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEAL--PFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhC--CCCCCCEEEEE
Confidence 46799999999999999998875 358999999999999998631 2457787654 34567999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGG 251 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgG 251 (369)
+...-...+ -....+++++|+|+|.+
T Consensus 116 ~~~~l~~~~----d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASD----NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccC----CHHHHHHHHHHHhcCce
Confidence 754322111 12568999999999954
No 138
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.89 E-value=2.1e-09 Score=107.82 Aligned_cols=149 Identities=22% Similarity=0.350 Sum_probs=115.6
Q ss_pred hHHHHHHHh-ccccC------CCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCE
Q 017607 126 CAYQEMIAH-LPLCS------IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRV 198 (369)
Q Consensus 126 ~~Y~e~l~~-~~l~~------~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 198 (369)
..||.|+.. +++.. +....++|++|-|+|.+...+..+.+..++++|||||.+++.|+++|.... +.|.
T Consensus 272 s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~ 347 (482)
T KOG2352|consen 272 SQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRN 347 (482)
T ss_pred cchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhh
Confidence 357877754 44432 223568999999999999998888888899999999999999999997663 3479
Q ss_pred EEEEcchHHHHhhC-----CCCCccEEEEcCCCCC-----CCccccccHHHHHHHHHhccCCceEEecccccchhhhHHH
Q 017607 199 RLHIGDAVEFLRQV-----PRGKYDAIIVDSSDPV-----GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIE 268 (369)
Q Consensus 199 ~v~~~Da~~~l~~~-----~~~~fDvIi~D~~~p~-----~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~ 268 (369)
+++..||.+|+++. .+..||+|++|...+. .|+.......++..++..|.|.|.++++.-. ....+-.
T Consensus 348 ~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~ 425 (482)
T KOG2352|consen 348 KVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKD 425 (482)
T ss_pred hhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhH
Confidence 99999999998764 2357999997754332 3456667788999999999999999887532 2334567
Q ss_pred HHHHHHHHHCCC
Q 017607 269 DMISICRETFKG 280 (369)
Q Consensus 269 ~i~~~l~~~F~~ 280 (369)
.+...++++|+.
T Consensus 426 ~~~~~l~~vf~~ 437 (482)
T KOG2352|consen 426 EVLMNLAKVFPQ 437 (482)
T ss_pred HHHHhhhhhhHH
Confidence 888899999984
No 139
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.89 E-value=2.3e-08 Score=103.36 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=95.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..-+||||||.|..+.++++..|...++++|+....+..+.+.....+ -.|+.++.+|+..+....++++.|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~----l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN----ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 3557999999999999999998888899999999988877666543331 257889999987666566678899999
Q ss_pred EcCCCCC----CCccccccHHHHHHHHHhccCCceEEecccccc
Q 017607 222 VDSSDPV----GPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 222 ~D~~~p~----~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
+..+||| +....+.+.+|++.+++.|+|||.+-+.++...
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 9999999 345679999999999999999999988776543
No 140
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=4.1e-09 Score=97.03 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
++..+.++|+|||+|..++-++.|+ ++|+++|+++.|+++++++.+.... +-..++...+..+++-. +++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~---~t~~~ms~~~~v~L~g~--e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYC---HTPSTMSSDEMVDLLGG--EESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccc---cCCccccccccccccCC--Ccceee
Confidence 4455589999999999999999996 7899999999999999998764421 33345555566665432 579999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCc-eEEecccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGG-VLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgG-ilv~~~~s 259 (369)
|++--.-++.. -.+||+.++|+|+++| +++++..+
T Consensus 104 I~~Aqa~HWFd-----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 104 ITAAQAVHWFD-----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ehhhhhHHhhc-----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99644434433 3579999999999888 77776544
No 141
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.87 E-value=1.3e-08 Score=93.85 Aligned_cols=110 Identities=14% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc--------CCCCCCCEEEEEcchHHHHhhC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA--------VGFEDPRVRLHIGDAVEFLRQV 212 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~--------~~~~~~rv~v~~~Da~~~l~~~ 212 (369)
+...+|||+|||.|..+..+++++ -+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 355799999999999999999875 589999999999997643211100 0012357999999988763211
Q ss_pred CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 213 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 213 ~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
.++||.|+-..+-. ..+.. ....+++.+.++|+|||.+++
T Consensus 111 -~~~fD~i~D~~~~~-~l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -LGPVDAVYDRAALI-ALPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -CCCcCEEEechhhc-cCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 25799887322211 11111 235689999999999996443
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.87 E-value=2.1e-08 Score=93.00 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..+|||||||+|.++..+++.. .+++++|+++.+++.+++++... ..+++++..|..++.... .++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEH-PGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhc-CCCccEEE
Confidence 46789999999999999988863 57999999999999999887643 235788889988775432 46899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+...-...+ ...++++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVP----DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccC----CHHHHHHHHHHHcCCCcEEEEEe
Confidence 643221111 12468899999999999988643
No 143
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.85 E-value=1.3e-08 Score=87.92 Aligned_cols=96 Identities=26% Similarity=0.400 Sum_probs=67.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+...+|||||||+|.++..+.+.+ .+++++|+++.+++. . ++.....+..... .++++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~------------~~~~~~~~~~~~~--~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--R------------NVVFDNFDAQDPP--FPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--T------------TSEEEEEECHTHH--CHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--h------------hhhhhhhhhhhhh--ccccchhhH
Confidence 567899999999999999997764 399999999999987 1 1111112111221 125789999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
++...-..-+ .-..+++.+.++|+|||.+++...
T Consensus 83 ~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLP----DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSS----HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhcc----cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9753322111 135799999999999999987653
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.84 E-value=3.7e-08 Score=100.38 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=82.5
Q ss_pred HHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH
Q 017607 127 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV 206 (369)
Q Consensus 127 ~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~ 206 (369)
.|..++..+. .....+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++...+. .+++++.+|+.
T Consensus 285 l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~----~~v~~~~~d~~ 355 (443)
T PRK13168 285 MVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGL----DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEeChH
Confidence 4444444332 1345799999999999999999875 6899999999999999998865522 36999999998
Q ss_pred HHHhh--CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 207 EFLRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 207 ~~l~~--~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++.. ..+++||+|++|.+-. +. .+.++.+.+ ++|++++.+..
T Consensus 356 ~~l~~~~~~~~~fD~Vi~dPPr~-g~------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 356 EDFTDQPWALGGFDKVLLDPPRA-GA------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred HhhhhhhhhcCCCCEEEECcCCc-Ch------HHHHHHHHh-cCCCeEEEEEe
Confidence 87643 2235799999876432 11 234555555 78988877644
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.8e-08 Score=88.66 Aligned_cols=93 Identities=24% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..+.|+|+|||+|.++..++-.. ..+|++||+|++.++++|++..+. ..++++++.|..++ ..++|.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc-----CCccceEE
Confidence 56789999999999999887775 479999999999999999998774 45899999998886 46799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKAL 247 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~L 247 (369)
++.+ ++....--.++|+..+.+.-
T Consensus 114 mNPP--FG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 114 MNPP--FGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred ECCC--CccccccCCHHHHHHHHHhh
Confidence 8764 44322234677888777654
No 146
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.83 E-value=3e-08 Score=91.14 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||||||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++..+|+.++.... .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~-~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKG-AKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCC-CCCccEEE
Confidence 47799999999999999988864 469999999999999998876431 126899999988876432 36899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+...- .... ....+++.+.+.|+|||.+++..
T Consensus 118 ~~~~l--~~~~--~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVL--EHVP--DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHH--HhCC--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 64321 1111 12468999999999999887643
No 147
>PRK06202 hypothetical protein; Provisional
Probab=98.83 E-value=1.9e-08 Score=93.46 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=70.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK 216 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~----~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~ 216 (369)
.++.+|||||||+|.++..+++. .+..+|+++|+++.+++.|++.... +++++...|+.... . .+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~-~-~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELV-A-EGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccccc-c-cCCC
Confidence 45679999999999999888753 3345899999999999999987542 34566666544332 1 3568
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
||+|++...-...+.. ....+++.+.++++ +++++
T Consensus 130 fD~V~~~~~lhh~~d~--~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDA--EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChH--HHHHHHHHHHHhcC-eeEEE
Confidence 9999975432221211 12468999999998 44444
No 148
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.81 E-value=2e-07 Score=94.68 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=78.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDv 219 (369)
+..+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+. .+++++.+|+.+++... ..++||+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~----~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGI----ANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCC----CceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 45799999999999999999874 5899999999999999999876522 47999999998876542 2357999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|++|.+.. +. ..++++.+.+ |+|++++.+.
T Consensus 366 vi~dPPr~-G~-----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 366 LLLDPPRK-GC-----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEECcCCC-CC-----CHHHHHHHHh-cCCCEEEEEc
Confidence 99887532 21 2456766554 8998877653
No 149
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.81 E-value=1.2e-08 Score=97.13 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=74.3
Q ss_pred CCCEEEEEeCcccH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhhch-hhcC-CC-----------------
Q 017607 142 SPKTVLVVGGGDGG----VLREISRHDS-----VELIDICEIDKMVIDVSKKYFP-ELAV-GF----------------- 193 (369)
Q Consensus 142 ~p~~VLdIG~G~G~----~~~~l~k~~~-----~~~V~~VEid~~vi~~ar~~~~-~~~~-~~----------------- 193 (369)
.+.+||++|||+|. ++..+++..+ ..+|+++|||+.+++.|++..- .... +.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 4555555422 3589999999999999998531 1000 00
Q ss_pred -C---CCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 194 -E---DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 194 -~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
. ..+|++...|+.+.. .+.++||+|++... ......-....+++.++++|+|||++++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~--~~~~~fD~I~crnv--l~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES--PPLGDFDLIFCRNV--LIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCC--CccCCCCEEEechh--HHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0 136889999987632 23468999996322 11111111346899999999999999873
No 150
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=1.7e-08 Score=90.94 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=77.6
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEE-EEEcchHHHHhhCCCCCccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVR-LHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~-v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...||+||||+|..-... ...+..+||.+|.++.|-+.+.+.+.+. ..+++. ++++|+.+.. +.++++||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLP-QLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCc-ccccCCeeeEE
Confidence 346899999999886543 2236789999999999999999887664 346677 9999988754 34578999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
....- .... -..+.+++++++|+|||+++..
T Consensus 151 ~TlvL--CSve--~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVL--CSVE--DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEE--eccC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 54321 1111 1246799999999999998863
No 151
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.79 E-value=5.7e-08 Score=89.59 Aligned_cols=102 Identities=16% Similarity=0.278 Sum_probs=71.1
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.++.+|||||||+|..+..+++.. .+|+++|+++.+++.|++++..... ..+++++.+|. .. ..++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~---~~~i~~~~~d~-~~----~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGL---AGNITFEVGDL-ES----LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC---ccCcEEEEcCc-hh----ccCCcCEE
Confidence 456799999999999999999875 4699999999999999998765421 24799999993 22 24679999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
++...-...+... ....++.+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 9643211111111 2356777777665444443
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.79 E-value=7.6e-08 Score=93.79 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=76.5
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+. .+++++.+|+.++.... .++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l----~~v~~~~~D~~~~~~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGL----TNVQFQALDSTQFATAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CceEEEEcCHHHHHHhc-CCCCeEEE
Confidence 45799999999999999999864 6899999999999999999876522 47999999999887532 35799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|.+-. +. ..+..+.+ ..++|++++.+..
T Consensus 246 ~dPPr~-G~-----~~~~~~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 246 VNPPRR-GI-----GKELCDYL-SQMAPRFILYSSC 274 (315)
T ss_pred ECCCCC-Cc-----cHHHHHHH-HHcCCCeEEEEEC
Confidence 886421 11 22334333 4477877766543
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.78 E-value=5.4e-08 Score=97.22 Aligned_cols=100 Identities=23% Similarity=0.383 Sum_probs=82.1
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEc
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVD 223 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 223 (369)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..++. .+++++.+|+..++.. .++||+|++|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~----~~~~v~~~Da~~~l~~--~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL----ENEKVFNKDANALLHE--ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CceEEEhhhHHHHHhh--cCCCCEEEEC
Confidence 589999999999999998876567899999999999999999876532 3577999999998853 3579999988
Q ss_pred CCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 224 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 224 ~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+ +.+ .+|++.+.+.++++|++.+.+
T Consensus 133 P~---Gs~-----~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF---GSP-----APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC---CCc-----HHHHHHHHHHhcCCCEEEEEe
Confidence 64 332 368888888899999987653
No 154
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.78 E-value=2.2e-07 Score=92.66 Aligned_cols=102 Identities=16% Similarity=0.185 Sum_probs=79.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.+|||+|||+|.++.+++... .+|++||+|+.+++.|++++...+. .+++++.+|+.+++... .++||+||
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~----~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGL----DNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 34789999999999999999653 6899999999999999999876532 37999999999887543 24699999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|.+-. +. ..++++.+. .++|++++.+..
T Consensus 306 ~DPPr~-G~-----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 306 VNPPRR-GI-----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCCCC-CC-----cHHHHHHHH-hcCCCeEEEEEe
Confidence 987532 21 245666665 479998887643
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.78 E-value=4.1e-08 Score=90.81 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=74.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc--------CCCCCCCEEEEEcchHHHHhhCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA--------VGFEDPRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~--------~~~~~~rv~v~~~Da~~~l~~~~ 213 (369)
...+||++|||.|..+..|+.++ .+|++||+++..++.+.+...... ..+...+++++++|+.++... .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-D 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-c
Confidence 45699999999999999999874 589999999999997643211100 012346899999999886322 1
Q ss_pred CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceE
Q 017607 214 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 253 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGil 253 (369)
...||.|+--..-..-++ -....+++.+.++|+|||.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~--~~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 114 LADVDAVYDRAALIALPE--EMRERYVQQLAALLPAGCRG 151 (218)
T ss_pred CCCeeEEEehHhHhhCCH--HHHHHHHHHHHHHcCCCCeE
Confidence 247998883221111111 12457899999999999853
No 156
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.77 E-value=1.2e-07 Score=92.34 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=79.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcC-CCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
++.+|||||||+|.++..+++.. .+|+++|+++.+++.++++++.... .....++++...|.... +++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEE
Confidence 45799999999999999999873 5899999999999999998764311 01134688889996542 3689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
++-..-. +.+.. ....+++.+.+ +.++|+++......+ ...+++.+.+.|+
T Consensus 217 v~~~vL~-H~p~~-~~~~ll~~l~~-l~~g~liIs~~p~~~-----~~~~l~~~g~~~~ 267 (315)
T PLN02585 217 TCLDVLI-HYPQD-KADGMIAHLAS-LAEKRLIISFAPKTL-----YYDILKRIGELFP 267 (315)
T ss_pred EEcCEEE-ecCHH-HHHHHHHHHHh-hcCCEEEEEeCCcch-----HHHHHHHHHhhcC
Confidence 8532211 11111 11245666654 567787775433322 2333444555555
No 157
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.74 E-value=3.5e-08 Score=88.59 Aligned_cols=72 Identities=25% Similarity=0.243 Sum_probs=61.6
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
++..||||+|||+|.++..|.+.. ..+..+||||++-+..|.++ .+.++++|+.+.|...++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 456899999999999998887764 56899999999988877663 478999999999988889999999
Q ss_pred EEcC
Q 017607 221 IVDS 224 (369)
Q Consensus 221 i~D~ 224 (369)
|+.-
T Consensus 80 Ilsq 83 (193)
T PF07021_consen 80 ILSQ 83 (193)
T ss_pred ehHh
Confidence 9643
No 158
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.73 E-value=5.9e-08 Score=88.48 Aligned_cols=128 Identities=23% Similarity=0.365 Sum_probs=86.3
Q ss_pred ceeEEEEcC-eEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc
Q 017607 108 YGKVLVLDG-IVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF 186 (369)
Q Consensus 108 ~G~~l~lDg-~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~ 186 (369)
.|-.+.+|- .+.++.+.... +.-++.. ..+.+.|||+.||-|..+..++++...+.|.++|++|..++..+++.
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~E-r~Ri~~~----v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTE-RRRIANL----VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TTEEEEEETTTS---GGGHHH-HHHHHTC------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHH-HHHHHhc----CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH
Confidence 577888883 44444433222 2222222 24678999999999999999999777789999999999999999998
Q ss_pred hhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 187 PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 187 ~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
..+.. ..++.++.+|+++++. ...+|.||++.+. . +.+|+..+.+++++||++.
T Consensus 146 ~lNkv---~~~i~~~~~D~~~~~~---~~~~drvim~lp~--~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNKV---ENRIEVINGDAREFLP---EGKFDRVIMNLPE--S------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT----TTTEEEEES-GGG------TT-EEEEEE--TS--S------GGGGHHHHHHHEEEEEEEE
T ss_pred HHcCC---CCeEEEEcCCHHHhcC---ccccCEEEECChH--H------HHHHHHHHHHHhcCCcEEE
Confidence 77643 3579999999999986 4689999987642 1 2358999999999999874
No 159
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=1.2e-07 Score=86.87 Aligned_cols=120 Identities=21% Similarity=0.299 Sum_probs=93.1
Q ss_pred ccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEE
Q 017607 122 EKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL 200 (369)
Q Consensus 122 ~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v 200 (369)
.+++..+-.|+..+ -+|+++|+||.-+|..+..++.. ++..+|+++|||+...+++.+....... +.++++
T Consensus 58 ~~d~g~fl~~li~~-----~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv---~~KI~~ 129 (237)
T KOG1663|consen 58 GPDKGQFLQMLIRL-----LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV---DHKITF 129 (237)
T ss_pred ChHHHHHHHHHHHH-----hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc---cceeee
Confidence 45555556666543 37899999999999999988764 6678999999999999999776554322 568999
Q ss_pred EEcchHHHHhhC----CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 201 HIGDAVEFLRQV----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 201 ~~~Da~~~l~~~----~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+++++.+-|.+. ..++||.+++|..-.. | ..+|+++.+.|++||++++.
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDadK~n------Y-~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDADKDN------Y-SNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccchHH------H-HHHHHHHHhhcccccEEEEe
Confidence 999998876542 3478999999874322 2 27899999999999999863
No 160
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.70 E-value=6.9e-07 Score=88.77 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=74.8
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC---------
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--------- 213 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~--------- 213 (369)
+.+|||++||+|.++..+++.. .+|++||+++.+++.+++++...+. .+++++.+|+.++++...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~----~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGI----DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCC----CcEEEEECCHHHHHHHHhhcccccccc
Confidence 3579999999999999888874 5899999999999999999866532 379999999999875421
Q ss_pred -----CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 214 -----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 214 -----~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..+||+|++|.+- .+. ..+.++.+.+ +++++.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYIS 319 (362)
T ss_pred cccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEE
Confidence 1259999998863 222 2345555544 67766654
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.68 E-value=9.3e-07 Score=87.56 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC---------C
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV---------P 213 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~---------~ 213 (369)
+.+|||+|||+|.++..+++.. .+|++||+++++++.+++++...+. .+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNI----DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC----CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3579999999999999988875 5899999999999999999876532 36999999999988631 0
Q ss_pred -----CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 214 -----RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 -----~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..+||+|++|.+. .+. ..++++.+.+ |++++.+..
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQA---YERILYISC 311 (353)
T ss_pred ccccccCCCCEEEECCCC-CCC-----cHHHHHHHHc---CCcEEEEEc
Confidence 1248999998873 232 2345555543 777777643
No 162
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=3.3e-07 Score=82.17 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=84.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC-CccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~-~fDvI 220 (369)
...++||+=+|+|+++.|.+..+ ..+++.||.|...+...++++..... ..+++++..|+..+++..... .||+|
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~---~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGL---EGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC---ccceEEEeecHHHHHHhcCCCCcccEE
Confidence 56799999999999999988774 57999999999999999999877632 468999999999988765432 49999
Q ss_pred EEcCCCCCCCccccccHHHHHH--HHHhccCCceEEeccc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDT--IAKALRPGGVLCNMAE 258 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~--~~~~LkpgGilv~~~~ 258 (369)
++|.+...+.... ..-+.. -...|+|+|.+++..+
T Consensus 119 flDPPy~~~l~~~---~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 119 FLDPPYAKGLLDK---ELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred EeCCCCccchhhH---HHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9988765333211 112222 3467999999998654
No 163
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.67 E-value=3.7e-08 Score=90.04 Aligned_cols=133 Identities=20% Similarity=0.274 Sum_probs=84.1
Q ss_pred EcCeEeecccchhHHHHHHHhccccC---CCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc
Q 017607 114 LDGIVQLTEKDECAYQEMIAHLPLCS---IPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA 190 (369)
Q Consensus 114 lDg~~q~~~~de~~Y~e~l~~~~l~~---~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~ 190 (369)
|.|..++++.|-..-...|..+.... .....++||+|+|-|.++..++... ..+|++||..+..++.|++++...
T Consensus 24 LGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~- 101 (218)
T PF05891_consen 24 LGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD- 101 (218)
T ss_dssp TTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-
T ss_pred ccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-
Confidence 45555666667665566666654432 1245689999999999999886553 479999999999999999987642
Q ss_pred CCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 191 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 191 ~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
.....+++..-..+|... +.+||+|.+-..- +.....--.+|++.|++.|+|+|++++
T Consensus 102 ---~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW~l--ghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 102 ---NPRVGEFYCVGLQDFTPE--EGKYDLIWIQWCL--GHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ---GCCEEEEEES-GGG------TT-EEEEEEES-G--GGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCCcceEEecCHhhccCC--CCcEeEEEehHhh--ccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 122356666666666432 3689999975432 111111125799999999999999985
No 164
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.66 E-value=8.4e-08 Score=89.62 Aligned_cols=98 Identities=26% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
...++|||||||.|..+..+++..|..++++.|+ |.+++.+++ .+|++++.+|.+ ...+ . +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P-~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLP-V-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCS-S-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhc-c-ccce
Confidence 4567999999999999999999888899999999 999999888 269999999977 3443 4 9999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCC--ceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPG--GVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg--Gilv~~ 256 (369)
++--.-+..+.. -...++++++++|+|| |.+++.
T Consensus 163 ~l~~vLh~~~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHDWSDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGGS-HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhhcchH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 975433333322 1356899999999998 988754
No 165
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.61 E-value=5.3e-07 Score=78.86 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=84.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH---HHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE---FLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~---~l~~~~~~~f 217 (369)
....||++|.|+|.+++.++++. ..+.++++|+|++.+....+.++ .++++.+|++. .+.+.+...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCee
Confidence 45689999999999999999873 45789999999999999888775 46699999875 3445556789
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccccc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 260 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~ 260 (369)
|.||+..+--.-|. -.+.++++.+...|..||.+++-+.+|
T Consensus 119 D~viS~lPll~~P~--~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 119 DSVISGLPLLNFPM--HRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred eeEEeccccccCcH--HHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 99997654433332 225678999999999999999755443
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.61 E-value=1.1e-08 Score=93.56 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=76.1
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
-+++||+|||+|..+..+-.. ..++++||||+.|++.|.+.=- ==++.+.|+..|++...+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 569999999999998877655 4689999999999999887511 11456788888997666789999983
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.|.......| ..+|..+...|+|||.|++.+++
T Consensus 195 --aDVl~YlG~L--e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 --ADVLPYLGAL--EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred --hhHHHhhcch--hhHHHHHHHhcCCCceEEEEecc
Confidence 3322111111 34788999999999999987654
No 167
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.60 E-value=3.1e-07 Score=91.44 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=83.7
Q ss_pred CEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 144 KTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
-+|||+.+|+|..+.+.++.. +..+|+++|+++..++.+++++..++. .+++++.+|+..++... .++||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~----~~~~v~~~Da~~~l~~~-~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV----ENIEVPNEDAANVLRYR-NRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEchhHHHHHHHh-CCCCCEEEe
Confidence 489999999999999999873 568999999999999999999876532 36899999999998764 357999998
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|.+ +.+ .+|++.+.+.++++|++.+.
T Consensus 121 DPf---Gs~-----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DPF---GTP-----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC---CCc-----HHHHHHHHHhcccCCEEEEE
Confidence 764 321 26999999999999988765
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.59 E-value=1.4e-06 Score=84.99 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=60.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-cCCCCCCCEEEEE-cchHHHHhhC--CCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-AVGFEDPRVRLHI-GDAVEFLRQV--PRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-~~~~~~~rv~v~~-~Da~~~l~~~--~~~~f 217 (369)
...+|||||||+|++...++...+..+++++|||+..++.|++++... +. ..+++++. .|....+... +.++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l---~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL---NGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC---cCcEEEEEccchhhhhhcccccCCce
Confidence 457899999999988888776544679999999999999999998765 22 34788864 4444333221 24689
Q ss_pred cEEEEcCCC
Q 017607 218 DAIIVDSSD 226 (369)
Q Consensus 218 DvIi~D~~~ 226 (369)
|+|+++.+.
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999976543
No 169
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.53 E-value=5.5e-07 Score=81.45 Aligned_cols=92 Identities=22% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||+|.++..+++.. ...++++|+++++++.+++. +++++.+|+.+.+...++++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEEE
Confidence 45699999999999999887764 34789999999999988642 4678888887644323456899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccC
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRP 249 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~Lkp 249 (369)
+...-.... ....+++++.+.+++
T Consensus 81 ~~~~l~~~~----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATR----NPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCc----CHHHHHHHHHHhCCe
Confidence 754321111 124567777776654
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=83.96 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=61.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
...+|||||||.|.++..+++.. .+|+++|+|+.+++.+++++...+. .++++++.+|+.+.- ...||+|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~---~~~v~ii~~Dal~~~----~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPL---ASKLEVIEGDALKTE----FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECCHhhhc----ccccCEEE
Confidence 45789999999999999999874 5799999999999999998764311 368999999998752 23699999
Q ss_pred EcCC
Q 017607 222 VDSS 225 (369)
Q Consensus 222 ~D~~ 225 (369)
.+++
T Consensus 107 aNlP 110 (294)
T PTZ00338 107 ANVP 110 (294)
T ss_pred ecCC
Confidence 7654
No 171
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.51 E-value=2.9e-06 Score=86.83 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=87.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
..+.+|||+++|.|+=+..++... ....|+++|+++.-++..++++...+. .++.+...|+..+.... .+.||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~----~nv~v~~~D~~~~~~~~-~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV----SNVALTHFDGRVFGAAL-PETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeCchhhhhhhc-hhhcCe
Confidence 356799999999999999998753 335899999999999999999887633 56899999998764433 357999
Q ss_pred EEEcCCCCC-CC----ccc-------------cccHHHHHHHHHhccCCceEEecccc
Q 017607 220 IIVDSSDPV-GP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p~-~~----~~~-------------L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
|++|++..- +. +.. -...+++..+.+.|+|||+||-.+.+
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 999986531 11 100 12367889999999999999865554
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.50 E-value=1.2e-05 Score=78.71 Aligned_cols=175 Identities=18% Similarity=0.179 Sum_probs=118.2
Q ss_pred ceeEEEEc-CeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc
Q 017607 108 YGKVLVLD-GIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF 186 (369)
Q Consensus 108 ~G~~l~lD-g~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~ 186 (369)
.|-.+.+| ..++++.+....-..++.. ......|||+=+|-|.++..++++.... |+++||+|..++..++++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~-----v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAEL-----VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhh-----hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHH
Confidence 46566667 4566665553322233222 2358899999999999999999997544 999999999999999998
Q ss_pred hhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhh--
Q 017607 187 PELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHT-- 264 (369)
Q Consensus 187 ~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~-- 264 (369)
..+.. ..++..+.+|++++.... ..+|-||+..+. .+.+|+..+.+.++++|++-.....+-...
T Consensus 232 ~LN~v---~~~v~~i~gD~rev~~~~--~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 232 RLNKV---EGRVEPILGDAREVAPEL--GVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred HhcCc---cceeeEEeccHHHhhhcc--ccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 77643 346999999999997653 579999986543 235689999999999999876543222111
Q ss_pred hHHHHHHHHHHHHCCCCeeEEEEEEeeccCCcEEEEE
Q 017607 265 HLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLI 301 (369)
Q Consensus 265 ~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g~w~f~~ 301 (369)
...+.+.....+.-.......+.-|-+|..+.|-+.+
T Consensus 299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEE
Confidence 1233333333332111233445667888778776554
No 173
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.49 E-value=8.9e-07 Score=82.20 Aligned_cols=111 Identities=5% Similarity=-0.079 Sum_probs=77.6
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-------c-CCCCCCCEEEEEcchHHHHhh-
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-------A-VGFEDPRVRLHIGDAVEFLRQ- 211 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-------~-~~~~~~rv~v~~~Da~~~l~~- 211 (369)
+...+||+.|||.|.-+..|+.++ -+|++||+++..++.+.+..... . ..+...+++++++|.+++-..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 345799999999999999999985 47999999999999876632110 0 012345799999999886211
Q ss_pred CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 212 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
...++||+|+--.+...-++ -....+.+.+.+.|+|||.++.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp--~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPN--DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhcCCH--HHHHHHHHHHHHHhCCCcEEEE
Confidence 11257999873322211121 1246789999999999998764
No 174
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.48 E-value=8.3e-07 Score=80.95 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=82.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+.-|||||||+|..+..+.... -..++|||++.|++.|.+ ... .-.++.+|.-+-+. +++++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~-------egdlil~DMG~Glp-frpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--REL-------EGDLILCDMGEGLP-FRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhh-------hcCeeeeecCCCCC-CCCCccceEE
Confidence 36689999999998887776553 578999999999999987 322 13466777665553 3568999988
Q ss_pred EcCCCCC-------CCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHH-HHHHHHCCC
Q 017607 222 VDSSDPV-------GPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMI-SICRETFKG 280 (369)
Q Consensus 222 ~D~~~p~-------~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~-~~l~~~F~~ 280 (369)
+-+.-.| ...+..--..||..++.+|++|+..|+|...- ....+..+. +.++.-|.+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe--n~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE--NEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc--chHHHHHHHHHHHhhccCC
Confidence 5332221 11111122458999999999999999885321 112233333 345555764
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.47 E-value=4.4e-07 Score=92.41 Aligned_cols=111 Identities=21% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCEEEEEeCcccHHHHHHHhc----CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 143 PKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~----~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
.+.|||||+|+|.+....++. ....+|.+||.++..+...++..... ++ +.+|+++.+|.+++- . +++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w-~~~V~vi~~d~r~v~--l-pekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GW-GDKVTVIHGDMREVE--L-PEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TT-TTTEEEEES-TTTSC--H-SS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CC-CCeEEEEeCcccCCC--C-CCcee
Confidence 467999999999998777654 34579999999998887766543322 22 358999999999873 2 35899
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
+||+..-.-.+. .+ ...+.+....+.|||||+++=+....+
T Consensus 261 IIVSElLGsfg~-nE-l~pE~Lda~~rfLkp~Gi~IP~~~t~y 301 (448)
T PF05185_consen 261 IIVSELLGSFGD-NE-LSPECLDAADRFLKPDGIMIPSSYTSY 301 (448)
T ss_dssp EEEE---BTTBT-TT-SHHHHHHHGGGGEEEEEEEESSEEEEE
T ss_pred EEEEeccCCccc-cc-cCHHHHHHHHhhcCCCCEEeCcchhhE
Confidence 999765433222 22 345778888999999999985544333
No 176
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.45 E-value=5.1e-07 Score=79.56 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=58.6
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCC-ccEEEE
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK-YDAIIV 222 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~-fDvIi~ 222 (369)
+.|+|+.||.|+.+..+++.. .+|++||+|+..++.|+.+..-.+. ..+++++.+|..+.++...... ||+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv---~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV---ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 369999999999999999985 6899999999999999999766533 4689999999999887653223 899996
Q ss_pred cCCCCCCC
Q 017607 223 DSSDPVGP 230 (369)
Q Consensus 223 D~~~p~~~ 230 (369)
+ .||+-
T Consensus 76 S--PPWGG 81 (163)
T PF09445_consen 76 S--PPWGG 81 (163)
T ss_dssp -----BSS
T ss_pred C--CCCCC
Confidence 4 46764
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.45 E-value=2.7e-06 Score=80.64 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..+|||||||.|.++..+++.. .+|+++|+|+.+++.+++++.. .++++++.+|+.++- . ..||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~--~--~~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD--L--PEFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC--c--hhceEEE
Confidence 45799999999999999999884 5899999999999999988753 358999999987742 2 3589999
Q ss_pred EcCC
Q 017607 222 VDSS 225 (369)
Q Consensus 222 ~D~~ 225 (369)
.+.+
T Consensus 97 ~NlP 100 (258)
T PRK14896 97 SNLP 100 (258)
T ss_pred EcCC
Confidence 7654
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.44 E-value=1.1e-06 Score=78.23 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=67.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH--hhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l--~~~~~~~fD 218 (369)
.++++||+||||.|..+..+++..+..+|++.|.++ +++.++.+...+.. ....++++..-|--+.+ ......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 367899999999999999999985568999999999 99999998876531 12456777766532211 111235899
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+||. +|-.+.. -....+++.+.+.|+++|.+++
T Consensus 122 ~Ila--sDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILA--SDVLYDE--ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEE--ES--S-G--GGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEE--ecccchH--HHHHHHHHHHHHHhCCCCEEEE
Confidence 9993 4444432 2246789999999999998554
No 179
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=79.06 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=80.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhc------CCCCCCCEEEEEcchHHHHhhCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELA------VGFEDPRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~~rv~v~~~Da~~~l~~~~ 213 (369)
+..+.|++|+|+|.++..+++. .+...+++||.-+++++.+++++...- ..++..++.++++|++..-.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 4668999999999999888864 223344999999999999999886653 135678999999999986543
Q ss_pred CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 214 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..+||.|.+.+..+. .-+.+...|++||.+++..
T Consensus 160 ~a~YDaIhvGAaa~~----------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASE----------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCccc----------cHHHHHHhhccCCeEEEee
Confidence 468999998765433 3456777899999888643
No 180
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.40 E-value=2.1e-06 Score=78.03 Aligned_cols=120 Identities=21% Similarity=0.193 Sum_probs=92.1
Q ss_pred cchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE
Q 017607 123 KDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI 202 (369)
Q Consensus 123 ~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~ 202 (369)
+.|-.|.+.++.... .+..+||.||.|-|.+...+-+.++. +-+.+|-.|+|++..|++-+. +..+|.++.
T Consensus 85 ~WEtpiMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~-----ek~nViil~ 155 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR-----EKENVIILE 155 (271)
T ss_pred hhhhHHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc-----cccceEEEe
Confidence 344556555554332 47889999999999999988888766 456799999999998887543 245788887
Q ss_pred cchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 203 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 203 ~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+--.+.+...+++.||-|+.|.+.+.+.. ..+|++.+.+.|||+|++..
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~yEd----l~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSELYED----LRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cchHhhhccccccCcceeEeechhhHHHH----HHHHHHHHhhhcCCCceEEE
Confidence 77666776677788999998887654432 46799999999999999985
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.39 E-value=1.1e-06 Score=78.87 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcE---------EEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVEL---------IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 211 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~---------V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~ 211 (369)
.....|||--||+|+++.|.+....... +.++|+|+.+++.|++++...+. ...+.+...|+.++-
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~---~~~i~~~~~D~~~l~-- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV---EDYIDFIQWDARELP-- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG--
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc---CCceEEEecchhhcc--
Confidence 4456899999999999999876533333 89999999999999999876533 346899999998864
Q ss_pred CCCCCccEEEEcCCCCCCCc----cccccHHHHHHHHHhccCCceEEec
Q 017607 212 VPRGKYDAIIVDSSDPVGPA----QELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~~----~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..++++|+||+|.+-..... ..-+...|++.++++|++..++++.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 23468999998876543221 1233456888999999995555543
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=1.6e-06 Score=82.82 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=58.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..+|||||||+|.++..++++. .+|+++|+|+.+++.+++.+. +++++++.+|+.++- .++-.+|.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~--~~~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVD--LSELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCC--HHHcCcceE
Confidence 356789999999999999999985 389999999999999998763 268999999988752 111115888
Q ss_pred EEcC
Q 017607 221 IVDS 224 (369)
Q Consensus 221 i~D~ 224 (369)
|.+.
T Consensus 110 v~Nl 113 (272)
T PRK00274 110 VANL 113 (272)
T ss_pred EEeC
Confidence 8654
No 183
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=5.9e-06 Score=73.33 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=87.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+++-+|+||||+|.+...+++. .+.....+.||+|..++..++-...+ .-++.++..|...-+++ ++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~---~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN---ESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc---CCccEE
Confidence 4788999999999999988765 45567889999999999988765543 45688999999888864 789999
Q ss_pred EEcCCCCCCCccc-----------------cccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 221 IVDSSDPVGPAQE-----------------LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 221 i~D~~~p~~~~~~-----------------L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
+.+.+-...+... -.+..++..+...|+|.|++...+ ......+++.+.+++
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~----~~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA----LRANKPKEILKILEK 183 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee----hhhcCHHHHHHHHhh
Confidence 9664321111111 123567788889999999987643 222334556665543
No 184
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=2.5e-06 Score=83.14 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=89.2
Q ss_pred HHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc-chH
Q 017607 128 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAV 206 (369)
Q Consensus 128 Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-Da~ 206 (369)
+...|+.++.. .....|||==||||+++.|+...+ .+++++|||..|++-|+.|+...+. ....++.. |+.
T Consensus 185 lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y~i----~~~~~~~~~Da~ 256 (347)
T COG1041 185 LARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYYGI----EDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhhCc----CceeEEEecccc
Confidence 45555555432 456799999999999999988775 6899999999999999999987632 34555555 876
Q ss_pred HHHhhCCCCCccEEEEcCCCCCCC------ccccccHHHHHHHHHhccCCceEEeccc
Q 017607 207 EFLRQVPRGKYDAIIVDSSDPVGP------AQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 207 ~~l~~~~~~~fDvIi~D~~~p~~~------~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
.. ..+++++|.|++|.+-.... ...| ..++++.+.++|++||.+++.+.
T Consensus 257 ~l--pl~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 257 NL--PLRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cC--CCCCCccceEEecCCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEecC
Confidence 64 24445799999887643322 1223 45799999999999999998654
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.36 E-value=1.1e-06 Score=81.42 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=74.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hchhhcC-------CCCCCCEEEEEcchHHHHhhC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKK-YFPELAV-------GFEDPRVRLHIGDAVEFLRQV 212 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~-~~~~~~~-------~~~~~rv~v~~~Da~~~l~~~ 212 (369)
+.+.+||+.|||.|.-+..|++++ -+|+++|+++..++.+.+ +...... .....+|+++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 455699999999999999999985 589999999999998843 2211110 023568999999998864322
Q ss_pred CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCce
Q 017607 213 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV 252 (369)
Q Consensus 213 ~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGi 252 (369)
.++||+|+=-.+...-++ -....+.+.+.++|+|||.
T Consensus 114 -~g~fD~iyDr~~l~Alpp--~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPP--EMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp -HHSEEEEEECSSTTTS-G--GGHHHHHHHHHHCEEEEEE
T ss_pred -cCCceEEEEecccccCCH--HHHHHHHHHHHHHhCCCCc
Confidence 257999983222211122 2356799999999999998
No 186
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.32 E-value=1.5e-06 Score=85.27 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCC------CCCEEEEEcchHHH-Hhh-CC
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE------DPRVRLHIGDAVEF-LRQ-VP 213 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~------~~rv~v~~~Da~~~-l~~-~~ 213 (369)
+..+|||||||-|+-+.-..+. .+..++++||+...|+.|+++......... +-...++.+|...- +.. ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5679999999988877777666 478999999999999999998733321100 12467788887532 221 22
Q ss_pred C--CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 214 R--GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 ~--~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+ .+||+|-+-..-+..-...---+.+++.+.+.|+|||+++.-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 4899998765443322222233569999999999999998543
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.31 E-value=5.2e-06 Score=78.34 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=58.6
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc--
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD-- 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD-- 218 (369)
.+..+|||||||+|.++..+++.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.++-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~----~~~d~~ 95 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL----PDFPKQ 95 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh----hHcCCc
Confidence 356799999999999999999886 3699999999999999987642 3689999999876521 2466
Q ss_pred -EEEEcCC
Q 017607 219 -AIIVDSS 225 (369)
Q Consensus 219 -vIi~D~~ 225 (369)
+|+.+.+
T Consensus 96 ~~vvsNlP 103 (253)
T TIGR00755 96 LKVVSNLP 103 (253)
T ss_pred ceEEEcCC
Confidence 7886553
No 188
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.30 E-value=7.6e-06 Score=78.46 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=77.1
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHH---HHhhchhhcCCCCCCCEEEEE
Q 017607 126 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDV---SKKYFPELAVGFEDPRVRLHI 202 (369)
Q Consensus 126 ~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~---ar~~~~~~~~~~~~~rv~v~~ 202 (369)
..+....-|++-. ..++|||||||+|.....+++.. .+.|+++|.++...-. +++++.. +.+ ....
T Consensus 102 ~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~------~~~-~~~l 170 (315)
T PF08003_consen 102 WKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQ------DPP-VFEL 170 (315)
T ss_pred chHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCC------Ccc-EEEc
Confidence 4567777777422 57899999999999999998885 4689999998876553 2333321 222 2333
Q ss_pred cchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 203 GDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 203 ~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..+.+.+.. .+.||+|++-.. .++.. .-.+.++.+++.|++||.+++.+
T Consensus 171 plgvE~Lp~--~~~FDtVF~MGV--LYHrr--~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 171 PLGVEDLPN--LGAFDTVFSMGV--LYHRR--SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred Ccchhhccc--cCCcCEEEEeee--hhccC--CHHHHHHHHHHhhCCCCEEEEEE
Confidence 456666654 368999995321 11110 01357899999999999999653
No 189
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.8e-06 Score=79.22 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=61.2
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC-CccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~-~fDvIi 221 (369)
...||+||+|.|.++..|++.. .+|+++|||+.+++..++.+.. ..+++++.+|+.++ +.+.- .++.|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~--d~~~l~~~~~vV 100 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKF--DFPSLAQPYKVV 100 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcC--cchhhcCCCEEE
Confidence 5799999999999999999985 5799999999999999998752 36899999999876 22211 688999
Q ss_pred EcCCC
Q 017607 222 VDSSD 226 (369)
Q Consensus 222 ~D~~~ 226 (369)
.+.+-
T Consensus 101 aNlPY 105 (259)
T COG0030 101 ANLPY 105 (259)
T ss_pred EcCCC
Confidence 76643
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.21 E-value=2.1e-05 Score=70.84 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=76.8
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcC
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 224 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 224 (369)
+++|||+|.|-=+.-++=..|..+++.||-...-+...+.-...++. ++++++.+.+.+ .. ...+||+|++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----~nv~v~~~R~E~--~~-~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----SNVEVINGRAEE--PE-YRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--TT-TTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----CCEEEEEeeecc--cc-cCCCccEEEeeh
Confidence 89999999998887777666778999999999988888776666533 579999999888 22 246899999776
Q ss_pred CCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 225 SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 225 ~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
..+. ..+++.+...|++||.++..-+.
T Consensus 124 v~~l--------~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 124 VAPL--------DKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSSH--------HHHHHHHGGGEEEEEEEEEEESS
T ss_pred hcCH--------HHHHHHHHHhcCCCCEEEEEcCC
Confidence 5432 35788999999999999876543
No 191
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.16 E-value=1.8e-05 Score=74.24 Aligned_cols=92 Identities=23% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..++||||.|+|.++..++.++ ++|.+.|+++.|....++. ..+++-.| ++- + .+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w~-~-~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DWQ-Q-TDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hhh-c-cCCceEEEe
Confidence 45689999999999999998886 6799999999997655542 23444333 332 2 246899998
Q ss_pred E-cCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 V-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~-D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+ +.-|-...+ ...++.+++.|+|+|++++
T Consensus 157 cLNvLDRc~~P-----~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 157 CLNVLDRCDRP-----LTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ehhhhhccCCH-----HHHHHHHHHHhCCCCEEEE
Confidence 4 221211111 3579999999999999875
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.16 E-value=1.3e-05 Score=77.29 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
.|++..+.. .+...++|++||.|+.+..+++..+ ..+|+++|+|+++++.+++.+.. ..+++++++|..+
T Consensus 9 ~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~ 79 (296)
T PRK00050 9 DEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHH
Confidence 455554432 2346899999999999999998753 57999999999999999987743 2589999999998
Q ss_pred HHhhCCC--CCccEEEEcC
Q 017607 208 FLRQVPR--GKYDAIIVDS 224 (369)
Q Consensus 208 ~l~~~~~--~~fDvIi~D~ 224 (369)
+....++ .++|.|++|+
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 7654322 2799999884
No 193
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.13 E-value=1.3e-05 Score=83.56 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH--h-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDS--------VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--R- 210 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~--------~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l--~- 210 (369)
...+|||.|||+|+++..++++.+ ...++++|||+..++.++.++.... ....++..+|..... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 356899999999999999876432 2578999999999999999876542 224566666654321 1
Q ss_pred hCCCCCccEEEEcCCCCCC-Ccc------------------------------------------ccccHHHHHHHHHhc
Q 017607 211 QVPRGKYDAIIVDSSDPVG-PAQ------------------------------------------ELVEKPFFDTIAKAL 247 (369)
Q Consensus 211 ~~~~~~fDvIi~D~~~p~~-~~~------------------------------------------~L~~~ef~~~~~~~L 247 (369)
....++||+||.+.+-... ... .++..=|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 1112579999966532211 000 011111346788999
Q ss_pred cCCceEEecccccchhhhHHHHHHHHHHHH
Q 017607 248 RPGGVLCNMAESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 248 kpgGilv~~~~s~~~~~~~~~~i~~~l~~~ 277 (369)
++||.+.+...+.|......+.+.+.+-+.
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 999999877766676655555555554443
No 194
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.12 E-value=1.2e-06 Score=71.21 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=45.9
Q ss_pred EEEeCcccHHHHHHHhcCCC---cEEEEEECCHH---HHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 147 LVVGGGDGGVLREISRHDSV---ELIDICEIDKM---VIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 147 LdIG~G~G~~~~~l~k~~~~---~~V~~VEid~~---vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
|+||+..|..+..+++.... .+++++|..+. .-+..++ .. + ..+++++.+|..+.+.....++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~~--~-~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----AG--L-SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS----------------GG--G--BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----cC--C-CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 68999999999888875322 27999999995 3333333 11 1 35799999999988876544689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
++|..... . .....++.+...|+|||+++.
T Consensus 74 ~iDg~H~~-~----~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 74 FIDGDHSY-E----AVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEES---H-H----HHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCH-H----HHHHHHHHHHHHcCCCeEEEE
Confidence 99985311 1 134568899999999999986
No 195
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.10 E-value=1.5e-05 Score=76.63 Aligned_cols=116 Identities=19% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCC--CCCEEEEEcchHHH-Hhh---CCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE--DPRVRLHIGDAVEF-LRQ---VPR 214 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~--~~rv~v~~~Da~~~-l~~---~~~ 214 (369)
+....||++|||-|+-++-.-+.. +..++++||....|+-|++....+..-++ --.+.++.+|...- |.+ .++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 456789999999999988877764 67899999999999999998766533111 12378899997543 211 123
Q ss_pred CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 215 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+||+|-+-...+..-...---+-+++.+.++|+|||+++-..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 3599888654443322111112458899999999999999644
No 196
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.10 E-value=1e-05 Score=71.08 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=57.3
Q ss_pred EEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccC
Q 017607 170 DICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP 249 (369)
Q Consensus 170 ~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkp 249 (369)
+++|+++.|++.|++..+..... ...+++++++|+.+. ..++++||+|++...-...+ -..+++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~----d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVV----DRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhC--CCCCCCeeEEEecchhhcCC----CHHHHHHHHHHHcCc
Confidence 47999999999998765432111 124799999998875 23456899999754322211 135789999999999
Q ss_pred CceEEec
Q 017607 250 GGVLCNM 256 (369)
Q Consensus 250 gGilv~~ 256 (369)
||.+++.
T Consensus 74 GG~l~i~ 80 (160)
T PLN02232 74 GSRVSIL 80 (160)
T ss_pred CeEEEEE
Confidence 9999864
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.08 E-value=2.1e-05 Score=70.19 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=78.4
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH-
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV- 206 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~- 206 (369)
.|++....+.....+.+|||||++.|+.+..++++. +..+|++||+.+. .. .+.+..+.+|..
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~ 74 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITN 74 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEE
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccch
Confidence 566666654433356899999999999999999885 4679999999876 10 123444444432
Q ss_pred ----HHHhhC---CCCCccEEEEcCCCCCCCcc---c----cccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHH
Q 017607 207 ----EFLRQV---PRGKYDAIIVDSSDPVGPAQ---E----LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS 272 (369)
Q Consensus 207 ----~~l~~~---~~~~fDvIi~D~~~p~~~~~---~----L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~ 272 (369)
+.+... ..+++|+|++|......... . -.....+..+.+.|+|||.+++-. +..... ..++.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~---~~~~~~-~~~~~ 150 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV---FKGPEI-EELIY 150 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE---SSSTTS-HHHHH
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe---ccCccH-HHHHH
Confidence 222221 12589999999843332110 0 011233456667899999887643 112223 36777
Q ss_pred HHHHHCCCCeeE
Q 017607 273 ICRETFKGSVHY 284 (369)
Q Consensus 273 ~l~~~F~~~v~~ 284 (369)
.++..|. .+..
T Consensus 151 ~l~~~F~-~v~~ 161 (181)
T PF01728_consen 151 LLKRCFS-KVKI 161 (181)
T ss_dssp HHHHHHH-HEEE
T ss_pred HHHhCCe-EEEE
Confidence 7777887 4543
No 198
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=8.8e-05 Score=75.32 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=79.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC-CCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP-RGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~-~~~fDvI 220 (369)
..++|||+=||.|.++..+++. ..+|++|||+++.++.|+++...++. .+++++.+|+.++..... ...+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i----~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGI----DNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCC----CcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4568999999999999999966 47999999999999999999877644 459999999999987642 3478999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|+|.+-.-. ..++++.+. .++|..++-+.
T Consensus 367 vvDPPR~G~------~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 367 VVDPPRAGA------DREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred EECCCCCCC------CHHHHHHHH-hcCCCcEEEEe
Confidence 998754221 235666655 46777776653
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.05 E-value=9.2e-06 Score=78.71 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=81.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-------CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-------DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR 214 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-------~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~ 214 (369)
...+|||-.||+|+++.++.++ ....++.++|+|+.++.+|+-++...+ .......+..+|.+..-.....
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--cccccccccccccccccccccc
Confidence 4558999999999999888763 245789999999999999998764331 1223456889997654321113
Q ss_pred CCccEEEEcCCCCCC--Cccc---------------cccHHHHHHHHHhccCCceEEecccccch-hhhHHHHHHHHHHH
Q 017607 215 GKYDAIIVDSSDPVG--PAQE---------------LVEKPFFDTIAKALRPGGVLCNMAESMWL-HTHLIEDMISICRE 276 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~--~~~~---------------L~~~ef~~~~~~~LkpgGilv~~~~s~~~-~~~~~~~i~~~l~~ 276 (369)
++||+||.+++-... .... -....|+..+.+.|++||.+++...+.++ .......+.+.+-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHh
Confidence 689999987653222 0000 01135889999999999987655444333 22233444444444
Q ss_pred H
Q 017607 277 T 277 (369)
Q Consensus 277 ~ 277 (369)
.
T Consensus 204 ~ 204 (311)
T PF02384_consen 204 N 204 (311)
T ss_dssp H
T ss_pred h
Confidence 3
No 200
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.05 E-value=2e-05 Score=66.48 Aligned_cols=93 Identities=24% Similarity=0.402 Sum_probs=63.7
Q ss_pred CCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHH
Q 017607 196 PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICR 275 (369)
Q Consensus 196 ~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~ 275 (369)
-+++++.+|+++.+++.. ..+|+|+.|.+.|...+ .+++.++++.++++++|||++++.+.. ..+.+.+.
T Consensus 31 v~L~L~~gDa~~~l~~l~-~~~Da~ylDgFsP~~nP-elWs~e~~~~l~~~~~~~~~l~Tys~a--------~~Vr~~L~ 100 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLD-ARFDAWYLDGFSPAKNP-ELWSEELFKKLARLSKPGGTLATYSSA--------GAVRRALQ 100 (124)
T ss_dssp EEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTSG-GGSSHHHHHHHHHHEEEEEEEEES--B--------HHHHHHHH
T ss_pred EEEEEEEcHHHHHHHhCc-ccCCEEEecCCCCcCCc-ccCCHHHHHHHHHHhCCCcEEEEeech--------HHHHHHHH
Confidence 457889999999998864 68999999998887654 489999999999999999999986533 22334444
Q ss_pred HHCCCCeeEEEEEEeeccCCcEEEEEeec
Q 017607 276 ETFKGSVHYAWASVPTYPSGIIGFLICST 304 (369)
Q Consensus 276 ~~F~~~v~~~~~~vP~~p~g~w~f~~ask 304 (369)
+ ..+.....|.|+ +....+.|+|
T Consensus 101 ~-----aGF~v~~~~g~g-~Kr~~~~a~~ 123 (124)
T PF05430_consen 101 Q-----AGFEVEKVPGFG-RKREMLRAVK 123 (124)
T ss_dssp H-----CTEEEEEEE-ST-TSSEEEEEEC
T ss_pred H-----cCCEEEEcCCCC-CcchheEEEc
Confidence 3 344456678774 4556666654
No 201
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=7.1e-06 Score=75.89 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=75.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSV--ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~--~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~f 217 (369)
.+.+||+||||.|.+..-+++..+. -+|.++|.+|..+++.+++-.. +..++...+-|... .......+++
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999999987655 7899999999999999987432 23455555555432 1222235789
Q ss_pred cEEEEcCCC-CCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 218 DAIIVDSSD-PVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 218 DvIi~D~~~-p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|.|++-..- .+.| .. -...++.+.++|||||.+++-
T Consensus 146 D~it~IFvLSAi~p-ek--~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAIHP-EK--MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEeccCh-HH--HHHHHHHHHHHhCCCcEEEEe
Confidence 988743211 1222 11 245789999999999999874
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.04 E-value=2.8e-05 Score=83.79 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhc----C--------------------------------------CCcEEEEEECCHHHH
Q 017607 142 SPKTVLVVGGGDGGVLREISRH----D--------------------------------------SVELIDICEIDKMVI 179 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~----~--------------------------------------~~~~V~~VEid~~vi 179 (369)
....++|-+||+|+++.|.+.. + ...+++++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3568999999999999998652 0 113699999999999
Q ss_pred HHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhcc---CCceEEec
Q 017607 180 DVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR---PGGVLCNM 256 (369)
Q Consensus 180 ~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lk---pgGilv~~ 256 (369)
+.|++++...+. ..++++..+|+.++......++||+||+|.+-.......-...++|+.+-+.|+ +|+.+++.
T Consensus 270 ~~A~~N~~~~g~---~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRAGV---AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHcCC---CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999999876633 347999999998764322235799999875432211111112345555555544 77776654
Q ss_pred c
Q 017607 257 A 257 (369)
Q Consensus 257 ~ 257 (369)
+
T Consensus 347 t 347 (702)
T PRK11783 347 S 347 (702)
T ss_pred e
Confidence 4
No 203
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.04 E-value=5e-05 Score=70.75 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=47.7
Q ss_pred EEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 017607 111 VLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDV 181 (369)
Q Consensus 111 ~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ 181 (369)
.+.+++...+-.+..+...+.+.+.... ...++|||+|||+|.++..+++.+ ..+|++||+++.++..
T Consensus 46 ~I~v~~~~~~vsr~~~kL~~~l~~~~~~--~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 46 KIELLQNPLFVSRGGEKLKEALEEFNID--VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred EEeccCccchhhhhHHHHHHHHHhcCCC--CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 3444443223334444556777766432 356789999999999999999984 6799999999977664
No 204
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=5.8e-05 Score=74.87 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=87.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCC--cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC-CCcc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSV--ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKYD 218 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~--~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~fD 218 (369)
...+|||++.+-|+=+..++..... ..|+++|+|+.-++..++++...+. .++.++..|+..+...... ++||
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~----~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV----RNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC----CceEEEecccccccccccccCcCc
Confidence 4579999999999999888876433 4569999999999999999987743 4588999998876544332 2599
Q ss_pred EEEEcCCCCC-CC----ccc-------------cccHHHHHHHHHhccCCceEEecccccc
Q 017607 219 AIIVDSSDPV-GP----AQE-------------LVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 219 vIi~D~~~p~-~~----~~~-------------L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
.|++|++... |. +.. -++.++++.+.+.|||||.|+-.+.|..
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 9999976422 11 111 2347889999999999999997776643
No 205
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=7.5e-06 Score=75.18 Aligned_cols=98 Identities=23% Similarity=0.256 Sum_probs=76.8
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCC--EEEEEcchHHHHhhCCCCCccEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPR--VRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~r--v~v~~~Da~~~l~~~~~~~fDvI 220 (369)
-..+++|||+-|.+.+.+.... +++++.+|.+..|++.|+.-- ||. +...++| .++|. ..++++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q--------dp~i~~~~~v~D-EE~Ld-f~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ--------DPSIETSYFVGD-EEFLD-FKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC--------CCceEEEEEecc-hhccc-ccccchhhh
Confidence 4579999999999999998875 899999999999999988642 344 4456677 45554 557899999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
|...+.+|... -+..+.+|+..|||+|.++.
T Consensus 142 isSlslHW~Nd----LPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 142 ISSLSLHWTND----LPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhhhhcc----CchHHHHHHHhcCCCccchh
Confidence 98777666431 12468899999999999984
No 206
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=71.30 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=82.5
Q ss_pred hHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 126 CAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 126 ~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
+.+.+++...+ ...+.|+|.|+|.++...++. .++|.++|.||...+.|++++.-. .+.+++++.+|+
T Consensus 22 avF~~ai~~va------~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVA------EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHh------hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccc
Confidence 34566666553 257999999999988777666 579999999999999999997433 246899999999
Q ss_pred HHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+.+ +. +.-|+||+..-|..-..+. ....+..+.+.|+.++.++-|
T Consensus 90 ~~y--~f--e~ADvvicEmlDTaLi~E~--qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 90 RDY--DF--ENADVVICEMLDTALIEEK--QVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred ccc--cc--cccceeHHHHhhHHhhccc--ccHHHHHHHHHhhcCCccccH
Confidence 987 33 4689999765543211111 234567777788899988744
No 207
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.98 E-value=8.1e-05 Score=73.78 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=75.9
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC----------
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV---------- 212 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~---------- 212 (369)
+.+|||+-||.|.++..+++.. .+|++||+++.+++.|+++...++. .+++++.+++.++....
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i----~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGI----DNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCC----CcceEEEeeccchhHHHHhhHHHHhhh
Confidence 4489999999999999999875 6899999999999999999877633 57999998876553211
Q ss_pred ----CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEE
Q 017607 213 ----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWAS 288 (369)
Q Consensus 213 ----~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~ 288 (369)
....+|+||+|++-.. . ...+.+.+.+ + . .++-.+.+| ..+.+=++.+.+.|. ... ...
T Consensus 271 ~~~~~~~~~d~vilDPPR~G-~-----~~~~~~~~~~-~--~-~ivYvSCnP----~tlaRDl~~L~~~y~-~~~--v~~ 333 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAG-L-----DEKVIELIKK-L--K-RIVYVSCNP----ATLARDLKILKEGYK-LEK--VQP 333 (352)
T ss_dssp GS-GGCTTESEEEE---TT--S-----CHHHHHHHHH-S--S-EEEEEES-H----HHHHHHHHHHHCCEE-EEE--EEE
T ss_pred hhhhhhcCCCEEEEcCCCCC-c-----hHHHHHHHhc-C--C-eEEEEECCH----HHHHHHHHHHhhcCE-EEE--EEE
Confidence 1236899999875422 1 2345555543 3 2 455444554 233333344554443 211 244
Q ss_pred EeeccC
Q 017607 289 VPTYPS 294 (369)
Q Consensus 289 vP~~p~ 294 (369)
+-.||-
T Consensus 334 ~DmFP~ 339 (352)
T PF05958_consen 334 VDMFPQ 339 (352)
T ss_dssp E-SSTT
T ss_pred eecCCC
Confidence 555664
No 208
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=2e-05 Score=67.58 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..++++|+|||.|-+....+ .+..+.|.++||||+.+++++++..++. -++++.+.|..+... ..+.||..+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~--~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL--KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc--cCCeEeeEE
Confidence 57899999999999885544 4456899999999999999999987762 356788888766532 247899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhcc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALR 248 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~Lk 248 (369)
+|.+. +.-..-..-+|.+...++.+
T Consensus 120 iNppF--GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPF--GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCC--CcccccccHHHHHHHHHHHH
Confidence 87643 43222234566665555444
No 209
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.96 E-value=2.1e-05 Score=76.49 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+.+.|||+|||+|.+....++.+ ..+|.+||-+..+ +.|++-+..++ + +..++++.+...+. ..|.++.|+||
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~--~-~~ii~vi~gkvEdi--~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNG--L-EDVITVIKGKVEDI--ELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcC--c-cceEEEeecceEEE--ecCccceeEEe
Confidence 56899999999999999999997 6799999997655 88888766552 2 34799999988776 34557999999
Q ss_pred EcCCCCCCCccccccHHHHH----HHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFD----TIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~----~~~~~LkpgGilv~ 255 (369)
+..-. . -|+....+. .=-+.|+|||++.-
T Consensus 133 SEWMG---y--~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 133 SEWMG---Y--FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred ehhhh---H--HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 65321 1 111111222 11257999999863
No 210
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.95 E-value=4.6e-05 Score=81.58 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=79.8
Q ss_pred CCEEEEEeCcccHHHHHHHhcC-------C-----CcEEEEEECCH---HHHHHHHhhchh-----------h---cCC-
Q 017607 143 PKTVLVVGGGDGGVLREISRHD-------S-----VELIDICEIDK---MVIDVSKKYFPE-----------L---AVG- 192 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~-------~-----~~~V~~VEid~---~vi~~ar~~~~~-----------~---~~~- 192 (369)
.-+|||+|.|+|.......+.. + .-+++.+|.+| +-+..+-+.++. + -.+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999877665322 1 24789999865 222222111111 0 001
Q ss_pred ----CCCC--CEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 193 ----FEDP--RVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 193 ----~~~~--rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++. +++++.+|+++.+++.. .++|+|+.|.+.|... +.+++.++|+.++++++|||.+++.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~-~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLD-ARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhcc-ccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 2233 46688999999998763 5799999999988765 35899999999999999999999865
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.94 E-value=3.2e-05 Score=72.76 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+..||+||.|+|.++..++... ++|++||+||.++....+.+..... ..+++++++|.... +.-.||.+
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~---~~kLqV~~gD~lK~----d~P~fd~c 127 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPK---SGKLQVLHGDFLKT----DLPRFDGC 127 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCc---cceeeEEecccccC----CCccccee
Confidence 456789999999999999999885 7999999999999988887754311 36899999996553 22479999
Q ss_pred EEcCCCCC
Q 017607 221 IVDSSDPV 228 (369)
Q Consensus 221 i~D~~~p~ 228 (369)
|.+.+..+
T Consensus 128 VsNlPyqI 135 (315)
T KOG0820|consen 128 VSNLPYQI 135 (315)
T ss_pred eccCCccc
Confidence 97665433
No 212
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=0.00015 Score=66.03 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH------HHhhCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQVP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~------~l~~~~ 213 (369)
....+|+|||+.-|+.+..+++.. ....|++|||+|.-. .+.|.++.+|... ......
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------IPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------------CCCceEEeeeccCccHHHHHHHHcC
Confidence 456899999999999999998863 234599999987531 2568888888642 222233
Q ss_pred CCCccEEEEcCCCCCCC---ccccc----cHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCee
Q 017607 214 RGKYDAIIVDSSDPVGP---AQELV----EKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVH 283 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~---~~~L~----~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~ 283 (369)
...+|+|++|....... ..+.. ....++.+...|+|||.+++- .++......+++.+++.|. .|.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~~~F~-~v~ 180 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALRRLFR-KVK 180 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHHHhhc-eeE
Confidence 44579999997653321 11111 133456777899999999862 3444566788899999998 443
No 213
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.87 E-value=0.00012 Score=69.87 Aligned_cols=108 Identities=18% Similarity=0.364 Sum_probs=64.7
Q ss_pred CCCEEEEEeCcccHHHHH-HHh-cCCCcEEEEEECCHHHHHHHHhhch-hhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 142 SPKTVLVVGGGDGGVLRE-ISR-HDSVELIDICEIDKMVIDVSKKYFP-ELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~-l~k-~~~~~~V~~VEid~~vi~~ar~~~~-~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
.|++|+-||+|.--++.- +++ +.....|+.+|+|++.++.+++-.. ..+ + ..+++++.+|+...-.+. ..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L-~~~m~f~~~d~~~~~~dl--~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--L-SKRMSFITADVLDVTYDL--KEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--c-cCCeEEEecchhcccccc--ccCC
Confidence 467999999996655544 443 4455789999999999999998765 221 1 468999999987754333 4799
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|++.+- .+.. .--..+.++.+.+.++||..+++-+
T Consensus 195 vV~lAal--Vg~~-~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAAL--VGMD-AEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT---S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhh--cccc-cchHHHHHHHHHhhCCCCcEEEEec
Confidence 9997543 2311 1125689999999999999998754
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.86 E-value=0.0002 Score=68.35 Aligned_cols=117 Identities=21% Similarity=0.335 Sum_probs=83.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCC--CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH--HhhCCCCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDS--VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGK 216 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~--~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~--l~~~~~~~ 216 (369)
..|-+||||.||.|.-...++...+ ..+|...|.++.-++..++.....+ +. .-+++..+|+++. +... .-+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~-~i~~f~~~dAfd~~~l~~l-~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LE-DIARFEQGDAFDRDSLAAL-DPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--Cc-cceEEEecCCCCHhHhhcc-CCC
Confidence 4678999999999999988876544 3799999999999999998876652 22 3469999999875 3332 235
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchh
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLH 263 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~ 263 (369)
.+++|+..-....+.+.+. ..-++.+.++|.|||.++. +..||+.
T Consensus 210 P~l~iVsGL~ElF~Dn~lv-~~sl~gl~~al~pgG~lIy-TgQPwHP 254 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLV-RRSLAGLARALEPGGYLIY-TGQPWHP 254 (311)
T ss_pred CCEEEEecchhhCCcHHHH-HHHHHHHHHHhCCCcEEEE-cCCCCCc
Confidence 8888864322122222222 2357889999999999985 4567753
No 215
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.81 E-value=0.00043 Score=63.75 Aligned_cols=99 Identities=21% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCC-ccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGK-YDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~-fDvIi 221 (369)
+++++|||.|.|-=+.-++=..+..+||.+|-...-+...++-..+. +-++++++.+.+.++-++ .+ ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~---~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQE---KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhcccc---cccCcEEE
Confidence 68999999999988777765555667999999998877776655444 236899999999887532 23 99999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+-+..+.. .+.+.+...|++||.++..
T Consensus 141 sRAva~L~--------~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 141 SRAVASLN--------VLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred eehccchH--------HHHHHHHHhcccCCcchhh
Confidence 76654332 3677888999999988743
No 216
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.79 E-value=7.7e-05 Score=67.97 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=74.1
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcC-CCCCCCEEEEEcch-HHHHhh--CCCCCccEE
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFEDPRVRLHIGDA-VEFLRQ--VPRGKYDAI 220 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~~~rv~v~~~Da-~~~l~~--~~~~~fDvI 220 (369)
+||+||+|+|.-+..++++.|..+-.-.|+|+......+.+....+. .+. +-+.+-+.+. ..+... ...+.||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCCCccee
Confidence 59999999999999999998888888899999987666666544322 111 2233322222 222100 124689999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++--.-++.+.. -...+|+.+.++|++||.|++..
T Consensus 107 ~~~N~lHI~p~~--~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 107 FCINMLHISPWS--AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eehhHHHhcCHH--HHHHHHHHHHHhCCCCCEEEEeC
Confidence 964333333322 24678999999999999999865
No 217
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00022 Score=67.25 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=79.1
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~f 217 (369)
....+||+-|.|+|++...+++. .|-.++...|+.+.-.+.|++.|..... ..++++.+.|.-. |.. +...+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---~~~vt~~hrDVc~~GF~~--ks~~a 178 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---GDNVTVTHRDVCGSGFLI--KSLKA 178 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---CcceEEEEeecccCCccc--ccccc
Confidence 35679999999999999999986 4567999999999999999999887643 4589999988643 322 24689
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCc-eEEec
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGG-VLCNM 256 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgG-ilv~~ 256 (369)
|+|++|.+.|+.. +-.+..+|+.+| .+|.-
T Consensus 179 DaVFLDlPaPw~A---------iPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 179 DAVFLDLPAPWEA---------IPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ceEEEcCCChhhh---------hhhhHHHhhhcCceEEec
Confidence 9999999998854 234445888877 56643
No 218
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.79 E-value=0.00028 Score=65.66 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=60.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..++||.||=.+-......+.. ..++|+++|||+.+++.-++.....+ -+++.+..|.++-+.+.-.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence 4789999998886555444433 35799999999999999888776652 34999999999887654357999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceE
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 253 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGil 253 (369)
+|.+ +.... -.-|+......|+..|..
T Consensus 118 TDPP---yT~~G--~~LFlsRgi~~Lk~~g~~ 144 (243)
T PF01861_consen 118 TDPP---YTPEG--LKLFLSRGIEALKGEGCA 144 (243)
T ss_dssp E------SSHHH--HHHHHHHHHHTB-STT-E
T ss_pred eCCC---CCHHH--HHHHHHHHHHHhCCCCce
Confidence 7654 33222 134888999999988843
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.78 E-value=0.00023 Score=68.40 Aligned_cols=132 Identities=21% Similarity=0.245 Sum_probs=94.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
...+|||+++|.|+=+..++... ....|+++|+++.-+...++++...+. .++.+...|+..+........||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~----~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV----FNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC----ceEEEEeeccccccccccccccchh
Confidence 45689999999999998888753 357899999999999999998877633 5788888999988544333469999
Q ss_pred EEcCCCCC-CC----ccc-------------cccHHHHHHHHHhc----cCCceEEecccccchhhhHHHHHHHHHHHHC
Q 017607 221 IVDSSDPV-GP----AQE-------------LVEKPFFDTIAKAL----RPGGVLCNMAESMWLHTHLIEDMISICRETF 278 (369)
Q Consensus 221 i~D~~~p~-~~----~~~-------------L~~~ef~~~~~~~L----kpgGilv~~~~s~~~~~~~~~~i~~~l~~~F 278 (369)
++|.+... +. +.. -...+.++.+.+.+ +|||.+|-.+.+... ..-..+.+.+-+.+
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EENEEVVEKFLKRH 238 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GGTHHHHHHHHHHS
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HHHHHHHHHHHHhC
Confidence 99976532 11 100 22467889999999 999999976665432 22344444444445
Q ss_pred C
Q 017607 279 K 279 (369)
Q Consensus 279 ~ 279 (369)
+
T Consensus 239 ~ 239 (283)
T PF01189_consen 239 P 239 (283)
T ss_dssp T
T ss_pred C
Confidence 5
No 220
>PRK10742 putative methyltransferase; Provisional
Probab=97.73 E-value=0.00036 Score=65.48 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=67.0
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcC--CCCC---CCEEEEEcchHHHHhhCCCCCccE
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAV--GFED---PRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~--~~~~---~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
+|||+=+|.|..+.+++..+ .+|++||-++.+..+.++.+..... .+.. .|++++.+|+.+||+... +.||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~-~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC-CCCcE
Confidence 89999999999999999874 4699999999999999998876421 1111 579999999999998754 47999
Q ss_pred EEEcCCCCCC
Q 017607 220 IIVDSSDPVG 229 (369)
Q Consensus 220 Ii~D~~~p~~ 229 (369)
|++|...|..
T Consensus 168 VYlDPMfp~~ 177 (250)
T PRK10742 168 VYLDPMFPHK 177 (250)
T ss_pred EEECCCCCCC
Confidence 9988776553
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.72 E-value=0.00013 Score=70.39 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=73.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..+-|||+|||+|.+....+..+ .++|.+||.+ +|.+.|++....+. + ..|+.++-|-..+. +. +++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~--~-~~rItVI~GKiEdi--eL-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNN--L-ADRITVIPGKIEDI--EL-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCC--c-cceEEEccCccccc--cC-chhccEEE
Confidence 46789999999999888777664 6899999986 57788888765442 2 35899998876654 34 46899999
Q ss_pred EcCCCCCCCccccccH---HHHHHHHHhccCCceEE
Q 017607 222 VDSSDPVGPAQELVEK---PFFDTIAKALRPGGVLC 254 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~---ef~~~~~~~LkpgGilv 254 (369)
+.|.+. .|+.+ |-|-.+++.|+|+|.+.
T Consensus 249 ---SEPMG~--mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 249 ---SEPMGY--MLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred ---eccchh--hhhhHHHHHHHHHHHhhcCCCCccc
Confidence 455543 23333 34557789999999876
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.70 E-value=0.00011 Score=69.88 Aligned_cols=110 Identities=21% Similarity=0.276 Sum_probs=73.9
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
..++..+.. .....|||||.|.|.++++++++. .++++||+|+.+++..++.+.. +++++++.+|+.++
T Consensus 20 ~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 20 DKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTS
T ss_pred HHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh------cccceeeecchhcc
Confidence 444544432 256799999999999999999986 7999999999999999998762 58999999999876
Q ss_pred HhhC-CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccC---CceEEec
Q 017607 209 LRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP---GGVLCNM 256 (369)
Q Consensus 209 l~~~-~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkp---gGilv~~ 256 (369)
-... -......|+.+.+ ... +..++..+...-+. ..++++|
T Consensus 89 ~~~~~~~~~~~~vv~NlP--y~i-----s~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLP--YNI-----SSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp CGGGHCSSSEEEEEEEET--GTG-----HHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred ccHHhhcCCceEEEEEec--ccc-----hHHHHHHHhhcccccccceEEEEe
Confidence 2211 0124557775543 222 33455555552222 3445555
No 223
>PRK04148 hypothetical protein; Provisional
Probab=97.65 E-value=0.00015 Score=61.91 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=51.1
Q ss_pred CCCEEEEEeCcccH-HHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGG-VLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~-~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+..+|||||+|.|. ++..|.+.. .+|+++|+++..++.+++. .++++.+|.++.-... -+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~-y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEI-YKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHH-HhcCCEE
Confidence 45789999999996 777777664 5899999999999988764 3678888877532121 1469999
Q ss_pred EE
Q 017607 221 IV 222 (369)
Q Consensus 221 i~ 222 (369)
..
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 84
No 224
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.65 E-value=0.00021 Score=65.03 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCEEEEEeCcccHHHHHHH----h---c-CC-CcEEEEEECCHHHHHHHHh------------------hc-hhhcCCC
Q 017607 142 SPKTVLVVGGGDGGVLREIS----R---H-DS-VELIDICEIDKMVIDVSKK------------------YF-PELAVGF 193 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~----k---~-~~-~~~V~~VEid~~vi~~ar~------------------~~-~~~~~~~ 193 (369)
.+-+|+-.||++|.-+-.++ . . .+ .-+|.+.|||+.+++.|++ +| +..+..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46699999999997554432 2 1 11 3589999999999999876 12 1111111
Q ss_pred --C---CCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 194 --E---DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 194 --~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
. ..+|++...|..+. ....+.||+|++-- ....-..-.....++.+.+.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRN--VlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRN--VLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-S--SGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCC--CcccCCccEEEecC--EEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 14688888888771 22346899999632 221112223467899999999999999873
No 225
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.00055 Score=69.73 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=87.7
Q ss_pred CCEEEEEeCcccHHHHHHHhc----CCCcEEEEEECCHHHHHHHHh-hchhhcCCCCCCCEEEEEcchHHHHhhCCCCCc
Q 017607 143 PKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVIDVSKK-YFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 217 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~----~~~~~V~~VEid~~vi~~ar~-~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~f 217 (369)
...|+++|+|-|-+.+..++. ...-++.+||-+|..+-..+. ++..+ +.+|+++..|.+.|-. +.++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a--p~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA--PREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC--chhhc
Confidence 457899999999999887663 223478999999998876654 34444 5799999999999952 23689
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHH
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~ 276 (369)
|+|++.+-...+ ..-.++|-+..+.+.|||+|+.+-+..+.+..+-....+.+.+++
T Consensus 441 DI~VSELLGSFG--DNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a 497 (649)
T KOG0822|consen 441 DIIVSELLGSFG--DNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKA 497 (649)
T ss_pred cchHHHhhcccc--CccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHh
Confidence 999965432222 233467899999999999999997665544444333344444443
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.51 E-value=0.0007 Score=62.35 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=83.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHH----HHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMV----IDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PR 214 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~v----i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~ 214 (369)
....+||-+|.++|++...++.- .+...|.+||.++.. +++|+++ +|+--+.+|++..-+-. --
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhccc
Confidence 35679999999999999999886 346689999999954 5566553 68888999998653321 12
Q ss_pred CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec--cc---ccchhhhHHHHHHHHHHHH-CC
Q 017607 215 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM--AE---SMWLHTHLIEDMISICRET-FK 279 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~--~~---s~~~~~~~~~~i~~~l~~~-F~ 279 (369)
+..|+|+.|...|.. .+-+..++...||+||.+++. +. +.-.....++...+.+++. |.
T Consensus 142 ~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp --EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCE
T ss_pred ccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCC
Confidence 489999999876542 234667888899999987743 22 2222345677777777763 54
No 227
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.46 E-value=0.00036 Score=69.71 Aligned_cols=104 Identities=25% Similarity=0.395 Sum_probs=78.4
Q ss_pred CCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+-+|||.=+|+|.=+...++. ....+|++-|||++.++..++++..++. ++.++++...|+...+... .+.||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHS-TT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhc-cccCCEEE
Confidence 458999999999988888777 6678999999999999999999876633 3347999999999988532 46899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|++ |.+ ..|++.+.+.++.||+|.+.+
T Consensus 127 lDPf---GSp-----~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPF---GSP-----APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--S---S-------HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCC---CCc-----cHhHHHHHHHhhcCCEEEEec
Confidence 8765 443 259999999999999997653
No 228
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.46 E-value=0.00032 Score=68.38 Aligned_cols=96 Identities=25% Similarity=0.291 Sum_probs=72.1
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
-...+|+|+|.|.++..++.+++ +|.+++.|...+..++.++. +.|+.+.+|+++- .| +-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~---~P--~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD---TP--KGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc---CC--CcCeEEE
Confidence 46899999999999999998765 59999999998888877763 2388888997764 33 4578886
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
----+....++ -..|+++|++.|+|||.+++
T Consensus 243 kWiLhdwtDed--cvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 KWILHDWTDED--CVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EeecccCChHH--HHHHHHHHHHhCCCCCEEEE
Confidence 43322222222 24699999999999998875
No 229
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.42 E-value=0.0011 Score=60.80 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=71.6
Q ss_pred EEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCC
Q 017607 146 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 225 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 225 (369)
|.||||--|.++.+|++.....+++++||++.-++.|++++...+. ..+++++.+|+++.+... +..|+||+..-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l---~~~i~~rlgdGL~~l~~~--e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL---EDRIEVRLGDGLEVLKPG--EDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--GG--G---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---cccEEEEECCcccccCCC--CCCCEEEEecC
Confidence 6899999999999999998888999999999999999999877633 358999999999987542 33788886321
Q ss_pred CCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 226 DPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 226 ~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
| .. ...++++.....++..-.|+.|.
T Consensus 76 ---G--G~-lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 76 ---G--GE-LIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp ------HH-HHHHHHHHTGGGGTT--EEEEEE
T ss_pred ---C--HH-HHHHHHHhhHHHhccCCeEEEeC
Confidence 1 11 13457777777777666788764
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.41 E-value=0.00036 Score=63.89 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=62.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDv 219 (369)
++..|+|.-||.|+.+...+..++ .|+++||||.-+..||.++.-.+ ..+ |+++++||..+..... ....+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYG--I~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYG--VPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeec--CCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 566788888888888877777653 69999999999999999987653 345 9999999988765432 2245777
Q ss_pred EEEcCCCCCCCcc
Q 017607 220 IIVDSSDPVGPAQ 232 (369)
Q Consensus 220 Ii~D~~~p~~~~~ 232 (369)
+. .+.|++.+.
T Consensus 169 vf--~sppwggp~ 179 (263)
T KOG2730|consen 169 VF--LSPPWGGPS 179 (263)
T ss_pred ee--cCCCCCCcc
Confidence 77 355665543
No 231
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00089 Score=66.37 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=79.5
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCC--------------------------------c-------EEEEEECCHHHHHHHH
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSV--------------------------------E-------LIDICEIDKMVIDVSK 183 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~--------------------------------~-------~V~~VEid~~vi~~ar 183 (369)
.+.++|-=||+|+++.|.+-.... + .+.++|||+.+++.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 358999999999999998765321 1 3779999999999999
Q ss_pred hhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccc----cccHHHHHHHHHhccCCceEEecc
Q 017607 184 KYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQE----LVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 184 ~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~----L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.|....+. ...+++.++|+..+-... +.+|+||++++-......+ -.+.+|-+.+++.++--+.+++.+
T Consensus 272 ~NA~~AGv---~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 272 ANARAAGV---GDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHhcCC---CceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99876543 457999999988763322 5899999776543322111 123467778888888777777644
No 232
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.35 E-value=0.00089 Score=61.39 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=65.9
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-----CCCCCCCEEEEEc
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VGFEDPRVRLHIG 203 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~~~~~rv~v~~~ 203 (369)
.+++..+.+ .+....+|||+|.|.....++...+..+..+||+.+...+.|++....+. .+....++++..+
T Consensus 32 ~~il~~~~l---~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 32 SKILDELNL---TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHhCC---CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 445554432 34568999999999999888876667889999999999998876433221 1334567899999
Q ss_pred chHHH--HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 204 DAVEF--LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 204 Da~~~--l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
|..+. .... -..-|+|+++... .. +.+ ...+......||+|-.+|.
T Consensus 109 dfl~~~~~~~~-~s~AdvVf~Nn~~-F~--~~l--~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 DFLDPDFVKDI-WSDADVVFVNNTC-FD--PDL--NLALAELLLELKPGARIIS 156 (205)
T ss_dssp -TTTHHHHHHH-GHC-SEEEE--TT-T---HHH--HHHHHHHHTTS-TT-EEEE
T ss_pred CccccHhHhhh-hcCCCEEEEeccc-cC--HHH--HHHHHHHHhcCCCCCEEEE
Confidence 97542 2211 0247999986542 11 111 1234555567888877775
No 233
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.29 E-value=0.0038 Score=61.03 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC----CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEE--EEcchHHHHhhC--
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD----SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL--HIGDAVEFLRQV-- 212 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~----~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v--~~~Da~~~l~~~-- 212 (369)
+....++++|||+|.=++.|++.. ...+++.||||.++++.+.+.+..- .-|.+++ +.+|..+.+.-.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 345589999999999887776542 2357999999999999999887621 1255666 777765543211
Q ss_pred --CCCCccEEEEcCCCCCCCccccccHHHHHHHHH-hccCCceEEeccc
Q 017607 213 --PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAK-ALRPGGVLCNMAE 258 (369)
Q Consensus 213 --~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~-~LkpgGilv~~~~ 258 (369)
......+|+.-.+ .++.........|++.+++ .|+|||.|++-.+
T Consensus 151 ~~~~~~~r~~~flGS-siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 151 PENRSRPTTILWLGS-SIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccccCCccEEEEeCc-cccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 1134566663221 1222222224579999999 9999999887443
No 234
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0018 Score=63.73 Aligned_cols=102 Identities=24% Similarity=0.341 Sum_probs=82.7
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
+.+|||-=+|+|.=+...+..-+..+|++-||+|..+++.++++..+. .....++..|+..++.+.. ..||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~-~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELH-RAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcC-CCccEEec
Confidence 789999999999988888876555599999999999999999987652 2456667799999997653 68999987
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|.+ +.+. +|++.+.+.++.+|++.+.+
T Consensus 128 DPF---GSPa-----PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPF---GSPA-----PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCC---CCCc-----hHHHHHHHHhhcCCEEEEEe
Confidence 655 4432 49999999999999997653
No 235
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.28 E-value=0.0021 Score=62.30 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=67.5
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.|++..+.. .+...++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+... ..|+++++++..++
T Consensus 10 ~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l 81 (305)
T TIGR00006 10 DEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANF 81 (305)
T ss_pred HHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHH
Confidence 445554422 2446899999999999999998754489999999999999999987543 35899999998776
Q ss_pred Hh---hCCCCCccEEEEcC
Q 017607 209 LR---QVPRGKYDAIIVDS 224 (369)
Q Consensus 209 l~---~~~~~~fDvIi~D~ 224 (369)
.+ ....+++|.|+.|+
T Consensus 82 ~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 82 FEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHhcCCCcccEEEEec
Confidence 43 22335799999884
No 236
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.28 E-value=0.00059 Score=62.30 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=56.7
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+....|-|+|||++.++..+.+. .+|..-|+-.. +++ ++..|.... ..++++.|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~-----------------n~~--Vtacdia~v--PL~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAP-----------------NPR--VTACDIANV--PLEDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STT--EEES-TTS---S--TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcccC---ceEEEeeccCC-----------------CCC--EEEecCccC--cCCCCceeEE
Confidence 44568999999999999776422 35777776210 233 556776443 1245789999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEe-cccccchhhhHHHHHHHHHHH
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN-MAESMWLHTHLIEDMISICRE 276 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~-~~~s~~~~~~~~~~i~~~l~~ 276 (369)
|..++..... ..+|++++.|+||+||.|.+ ...|.+.. .+.+.+.+.+
T Consensus 127 VfcLSLMGTn-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~---~~~F~~~~~~ 175 (219)
T PF05148_consen 127 VFCLSLMGTN-----WPDFIREANRVLKPGGILKIAEVKSRFEN---VKQFIKALKK 175 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEEEEEGGG-S----HHHHHHHHHC
T ss_pred EEEhhhhCCC-----cHHHHHHHHheeccCcEEEEEEecccCcC---HHHHHHHHHH
Confidence 9877642221 35799999999999999864 34444433 3444455543
No 237
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.24 E-value=0.00081 Score=64.77 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=68.8
Q ss_pred CCCEEEEEeCcccHHHHHHH----hcC----CCcEEEEEECCHHHHHHHHhhc-hhhc-----------------C---C
Q 017607 142 SPKTVLVVGGGDGGVLREIS----RHD----SVELIDICEIDKMVIDVSKKYF-PELA-----------------V---G 192 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~----k~~----~~~~V~~VEid~~vi~~ar~~~-~~~~-----------------~---~ 192 (369)
.+-+|+..||.+|--+-.++ ... ..-+|+++|||+.+++.|++-. +... . +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999997554432 321 1347999999999999998731 1110 0 0
Q ss_pred ---CC---CCCEEEEEcchHHHHhhC-CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 193 ---FE---DPRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 193 ---~~---~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+. ..+|++...|..+. .. ..+.||+|++--. ......-.....++.+.+.|+|||+|++
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~--~~~~~~~fD~I~cRNv--liyF~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAK--QWAVPGPFDAIFCRNV--MIYFDKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred eEEEChHHHccCEEEcccCCCC--CCccCCCcceeeHhhH--HhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 13566666666542 11 1368999996321 1111111246789999999999999886
No 238
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.17 E-value=0.0027 Score=58.08 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=63.7
Q ss_pred chhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhc----CCCcEEEEEECCHHHHH-HHHhhchhhcCCCCCCCE
Q 017607 124 DECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRH----DSVELIDICEIDKMVID-VSKKYFPELAVGFEDPRV 198 (369)
Q Consensus 124 de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~----~~~~~V~~VEid~~vi~-~ar~~~~~~~~~~~~~rv 198 (369)
|-..|+|++-.+ +|+.|+++|.-.|+.+...+.. .+..+|++||||-.-.. .+.+..|. .+++
T Consensus 20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI 87 (206)
T PF04989_consen 20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRI 87 (206)
T ss_dssp HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCce
Confidence 556788888765 7899999999999998876542 25679999999754332 22222221 3799
Q ss_pred EEEEcchHH--HHhh---C-CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 199 RLHIGDAVE--FLRQ---V-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 199 ~v~~~Da~~--~l~~---~-~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
++++||..+ .+.. . ......+||.|+...... ...-++.....+++|+.+|+.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h-----vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH-----VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SS-----HHHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH-----HHHHHHHhCccCCCCCEEEEE
Confidence 999999753 2222 1 123566888887642222 123466788999999999874
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.011 Score=53.11 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc-chH------HHHhhCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAV------EFLRQVP 213 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-Da~------~~l~~~~ 213 (369)
+..+|||+|+..|+.+....+. .|...|.+|||-.- +| -+.++++.+ |.. +..+..+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p-------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EP-------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cC-------CCCcccccccccCCHHHHHHHHHhCC
Confidence 3569999999999999877654 47889999998321 22 123444444 332 2223345
Q ss_pred CCCccEEEEcCCC-CCCC--cccccc----HHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCee
Q 017607 214 RGKYDAIIVDSSD-PVGP--AQELVE----KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVH 283 (369)
Q Consensus 214 ~~~fDvIi~D~~~-p~~~--~~~L~~----~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~ 283 (369)
+...|+|++|... +.+. ..+.-. .+.+-.....+.|+|.+++-. |. ...-..+.+.+.+.|. .|.
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~---w~-g~e~~~l~r~l~~~f~-~Vk 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL---WD-GSEEALLQRRLQAVFT-NVK 205 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE---ec-CCchHHHHHHHHHHhh-hcE
Confidence 6789999999653 2222 111111 112233345678999998632 32 2334566777888887 554
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.05 E-value=0.0014 Score=64.23 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+..++||||++.|+.+..+++.. .+|++||..+..-. + .++++|+.+.+|++.+... .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-----L------~~~~~V~h~~~d~fr~~p~--~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-----L------MDTGQVEHLRADGFKFRPP--RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-----h------hCCCCEEEEeccCcccCCC--CCCCCEE
Confidence 356799999999999999999885 49999996652211 1 1378999999999998642 4679999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCC
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPG 250 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg 250 (369)
++|... .| ...++.+.+.|..|
T Consensus 275 VcDmve--~P------~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE--KP------ARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc--CH------HHHHHHHHHHHhcC
Confidence 999864 22 23566777777655
No 241
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.04 E-value=0.0069 Score=48.98 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred EEEEeCcccHHHHHHHhcCCC-cEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC-CCccEEEEc
Q 017607 146 VLVVGGGDGGVLREISRHDSV-ELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKYDAIIVD 223 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~~~-~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~fDvIi~D 223 (369)
++++|||.|... .+.+.... ..++++|+++.+++.++..... .. ...+.+...|.......... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---LGLVDFVVADALGGVLPFEDSASFDLVIS- 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC---CCceEEEEeccccCCCCCCCCCceeEEee-
Confidence 999999999976 33333222 3788899999999985554321 11 11167888887652112222 37999943
Q ss_pred CCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 224 SSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 224 ~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
........ ....+..+.+.|+|+|.++....
T Consensus 126 ~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 126 LLVLHLLP----PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeehhcCC----HHHHHHHHHHhcCCCcEEEEEec
Confidence 22211111 35689999999999998886543
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.04 E-value=0.0039 Score=59.70 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=38.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchh
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPE 188 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~ 188 (369)
.|++|||+|+|.|..+..+... ....++++||.++.++++++.-+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 6889999999999877666554 3467899999999999999986654
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.03 E-value=0.0018 Score=55.01 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=45.9
Q ss_pred EEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcch
Q 017607 146 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDA 205 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da 205 (369)
|||||||.|..+..+++..+..+|+++|.++.+.+.+++++...+. ++++++....
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~----~~v~~~~~al 57 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL----PNVVLLNAAV 57 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC----CcEEEEEeee
Confidence 8999999999999999887667999999999999999998765421 3467666553
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0042 Score=57.09 Aligned_cols=105 Identities=11% Similarity=0.177 Sum_probs=83.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+..++.||||--+.++.++.+..+...++++|+++.-++.|.++++..+. .+++++..+|++..++. ++.+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l---~~~i~vr~~dgl~~l~~--~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL---SERIDVRLGDGLAVLEL--EDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC---cceEEEeccCCccccCc--cCCcCEEE
Confidence 44569999999999999999988899999999999999999999987643 57899999999887753 45799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+..-. +. + -.+++++-.+.|+.-=.++.|-
T Consensus 91 IAGMG--G~---l-I~~ILee~~~~l~~~~rlILQP 120 (226)
T COG2384 91 IAGMG--GT---L-IREILEEGKEKLKGVERLILQP 120 (226)
T ss_pred EeCCc--HH---H-HHHHHHHhhhhhcCcceEEECC
Confidence 64321 11 1 2468888888888555677764
No 245
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.98 E-value=0.0057 Score=58.32 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=75.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchh------------hc----------------CC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE------------LA----------------VG- 192 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~------------~~----------------~~- 192 (369)
++.+||+=|||-|.++.++++.+ -.+.+.|.|--|+=..+--+.. .+ ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45799999999999999999984 4899999999886443221110 00 00
Q ss_pred -------CCCCCEEEEEcchHHHHhhC-CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 193 -------FEDPRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 193 -------~~~~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
-...++.+..||..++-... ..++||+|++..+- ..+..+ .++++.+.++|||||+.|....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI--DTA~Ni--~~Yi~tI~~lLkpgG~WIN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI--DTAENI--IEYIETIEHLLKPGGYWINFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe--echHHH--HHHHHHHHHHhccCCEEEecCC
Confidence 01346888889977764321 13689999965331 112222 4689999999999998886543
No 246
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.97 E-value=0.0033 Score=59.92 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCEEEEEeCcccH----HHHHHHhcCC-----CcEEEEEECCHHHHHHHHhh-ch-hhc-CC---------C---CC--
Q 017607 142 SPKTVLVVGGGDGG----VLREISRHDS-----VELIDICEIDKMVIDVSKKY-FP-ELA-VG---------F---ED-- 195 (369)
Q Consensus 142 ~p~~VLdIG~G~G~----~~~~l~k~~~-----~~~V~~VEid~~vi~~ar~~-~~-~~~-~~---------~---~~-- 195 (369)
++-+|+-.||++|- ++..+.++.+ .-+|++.|||..+++.|++= ++ ... .+ | .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 3444445442 46899999999999998762 22 110 00 0 01
Q ss_pred --------CCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 196 --------PRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 196 --------~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
..|.+...|...--. ..+.||+|++- +....-..-...+.++..+..|+|||+|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCR--NVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCR--NVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEc--ceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 134444444332110 23579999963 222222222356789999999999999986
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.90 E-value=0.0074 Score=58.32 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=53.4
Q ss_pred hhHHHHHHHhccccCCC---CCCEEEEEeCcccHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-cCCCCCCCEE
Q 017607 125 ECAYQEMIAHLPLCSIP---SPKTVLVVGGGDGGVL-REISRHDSVELIDICEIDKMVIDVSKKYFPEL-AVGFEDPRVR 199 (369)
Q Consensus 125 e~~Y~e~l~~~~l~~~~---~p~~VLdIG~G~G~~~-~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-~~~~~~~rv~ 199 (369)
...|-..+..+.....+ ..-++||||+|.-++= .-.++.+ .-++++.|||+..++.|+++...+ +. ..+++
T Consensus 82 R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~ 157 (299)
T PF05971_consen 82 RLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL---ESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T----TTTEE
T ss_pred hHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc---ccceE
Confidence 34565555554332222 2458999999987663 3334444 469999999999999999998765 32 46888
Q ss_pred EEEcch----HHHHhhCCCCCccEEEEcCCC
Q 017607 200 LHIGDA----VEFLRQVPRGKYDAIIVDSSD 226 (369)
Q Consensus 200 v~~~Da----~~~l~~~~~~~fDvIi~D~~~ 226 (369)
++...- +..+.. ..+.||+.+++.+.
T Consensus 158 l~~~~~~~~i~~~i~~-~~e~~dftmCNPPF 187 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQ-PNERFDFTMCNPPF 187 (299)
T ss_dssp EEE--ST-SSTTTSTT---S-EEEEEE----
T ss_pred EEEcCCccccchhhhc-ccceeeEEecCCcc
Confidence 876532 222222 23689999986543
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.87 E-value=0.0037 Score=56.73 Aligned_cols=114 Identities=24% Similarity=0.339 Sum_probs=85.0
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc----CCCCCCCEEEEEcchHHHHhhCC-CCCcc
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA----VGFEDPRVRLHIGDAVEFLRQVP-RGKYD 218 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~----~~~~~~rv~v~~~Da~~~l~~~~-~~~fD 218 (369)
-.+.|||||-|+++.+|+-.+|..-|.+.||--.|.+..++.+..+. .++ -+++.+....+..|+.+.- .+.-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence 36899999999999999999999999999999999998888765442 122 4678899999999886542 23333
Q ss_pred EEEEcCCCCC----CCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 219 AIIVDSSDPV----GPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 219 vIi~D~~~p~----~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
-++.-.+||- .....+.+...+....-+|++||++.+.++
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 3443345553 123446677788889999999999987553
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.83 E-value=0.0027 Score=64.76 Aligned_cols=133 Identities=19% Similarity=0.286 Sum_probs=72.3
Q ss_pred eeEEEE-cCeEeecccchhHHHHHHHhc-ccc-CCCCCCEEEEEeCcccHHHHHHHhcCCCcEEE--EEECCHHHHHHHH
Q 017607 109 GKVLVL-DGIVQLTEKDECAYQEMIAHL-PLC-SIPSPKTVLVVGGGDGGVLREISRHDSVELID--ICEIDKMVIDVSK 183 (369)
Q Consensus 109 G~~l~l-Dg~~q~~~~de~~Y~e~l~~~-~l~-~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~--~VEid~~vi~~ar 183 (369)
|..+.+ .|..|+.. ....|.+.|..+ ++. ....-+.+||||||.|+++..++.+. +..+. .-|..+..++.|-
T Consensus 82 gd~~~FPgggt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfal 159 (506)
T PF03141_consen 82 GDKFRFPGGGTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFAL 159 (506)
T ss_pred CCEEEeCCCCccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhh
Confidence 444444 34445533 223565444443 331 22345689999999999999998874 22211 1244444555554
Q ss_pred hh-chhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcC-CCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 184 KY-FPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS-SDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 184 ~~-~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~-~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+. +|.+ +.+. +. +-| ..+.+.||+|-+.- -.++..... -++-++-|+|+|||.++..+..
T Consensus 160 eRGvpa~--------~~~~-~s--~rL-Pfp~~~fDmvHcsrc~i~W~~~~g----~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 160 ERGVPAM--------IGVL-GS--QRL-PFPSNAFDMVHCSRCLIPWHPNDG----FLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hcCcchh--------hhhh-cc--ccc-cCCccchhhhhcccccccchhccc----ceeehhhhhhccCceEEecCCc
Confidence 43 2221 1110 01 111 23567899998532 234443222 2566789999999999975543
No 250
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.77 E-value=0.0039 Score=60.55 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=62.1
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.|.+..+.. .+...++|.=.|.|+-+..+++..+..+++++|.|+.+++.+++.+... ..|+.++.++..++
T Consensus 10 ~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGH
T ss_pred HHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHH
Confidence 455655542 3456889999999999999998755689999999999999999987644 57999999886544
Q ss_pred ---HhhC-CCCCccEEEEcC
Q 017607 209 ---LRQV-PRGKYDAIIVDS 224 (369)
Q Consensus 209 ---l~~~-~~~~fDvIi~D~ 224 (369)
+... ...++|.|++|+
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 4444 345899999884
No 251
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.00094 Score=63.73 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=103.1
Q ss_pred eeeeeEEEeeeCCCceEEEEEecCceeEEEEcCeEeecccchhHHHH-HHHhccccCCCCCCEEEEEeCcccHHHHHHHh
Q 017607 84 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQE-MIAHLPLCSIPSPKTVLVVGGGDGGVLREISR 162 (369)
Q Consensus 84 ~~~~~~l~~~~s~~q~I~v~~~~~~G~~l~lDg~~q~~~~de~~Y~e-~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k 162 (369)
++...+++.+.+++|++.+.. +..|.++.++.....-+.+- .|.. |+.. -..++|..+|| +|....+..+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk-~y~p~la~g------y~~~~v~l~iG-DG~~fl~~~~ 192 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSK-QYLPTLACG------YEGKKVKLLIG-DGFLFLEDLK 192 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHH-HHhHHHhcc------cCCCceEEEec-cHHHHHHHhc
Confidence 567789999999999999987 66888888887665544442 3333 3222 24568888887 9999988887
Q ss_pred cCCCcEEEEEECCHHHHHHHHhhc----hhhcCCCCCCCEEEEEcchHH----HHhhCCCCCccEEEEcCCC------CC
Q 017607 163 HDSVELIDICEIDKMVIDVSKKYF----PELAVGFEDPRVRLHIGDAVE----FLRQVPRGKYDAIIVDSSD------PV 228 (369)
Q Consensus 163 ~~~~~~V~~VEid~~vi~~ar~~~----~~~~~~~~~~rv~v~~~Da~~----~l~~~~~~~fDvIi~D~~~------p~ 228 (369)
+.+ ..|+++|+|..+...+..+. .....++....+.+.++|..- ++++. .+||-++.+..+ |.
T Consensus 193 ~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~--r~~~~~~f~~t~ya~ttvPT 269 (337)
T KOG1562|consen 193 ENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG--RSFCYVIFDLTAYAITTVPT 269 (337)
T ss_pred cCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH--HHhHHHhcCccceeeecCCC
Confidence 754 58999999999888776653 333335666789999998653 33332 345555544322 22
Q ss_pred CCccccccHHHHHHHHHhccCCceEEecc
Q 017607 229 GPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 229 ~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++... -.|..+.. |+|+|-+.++.
T Consensus 270 ypsg~----igf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 270 YPSGR----IGFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred Cccce----EEEEEecc-cCCCCCccCCC
Confidence 22111 11223334 89999888654
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.69 E-value=0.0039 Score=58.52 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+.|.+|+|||||-=-++.-.....+...+.++|||..+++....++... .++.++.+.|...-. +....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~~---~~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSDP---PKEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTSH---TTSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeeccC---CCCCcchh
Confidence 4588999999998777776666666679999999999999999998776 467888888865432 34679998
Q ss_pred EE
Q 017607 221 IV 222 (369)
Q Consensus 221 i~ 222 (369)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0089 Score=61.10 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC---CCc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR---GKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~---~~f 217 (369)
+..+-+||+.||+|.+...++++ +.+|.+||+++..++-|+++...++. .+.+++++-+.+.+...-. ++=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~Ngi----sNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGI----SNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCc----cceeeeecchhhccchhcccCCCCC
Confidence 45578999999999999999887 47999999999999999998766533 6799999966655433211 234
Q ss_pred c-EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccccc
Q 017607 218 D-AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 260 (369)
Q Consensus 218 D-vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~ 260 (369)
+ ++|+|.+-.-. ...+++.+.+.-++.=++. .+.++
T Consensus 456 ~~v~iiDPpR~Gl------h~~~ik~l~~~~~~~rlvy-vSCn~ 492 (534)
T KOG2187|consen 456 TLVAIIDPPRKGL------HMKVIKALRAYKNPRRLVY-VSCNP 492 (534)
T ss_pred ceEEEECCCcccc------cHHHHHHHHhccCccceEE-EEcCH
Confidence 5 66666654221 2235665555544544333 33444
No 254
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.58 E-value=0.0079 Score=56.59 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=59.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
....|-|+|||.+-++. .. ..+|...|+- ..+-+++..|.++. ..++++.|++|
T Consensus 180 ~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~-------------------a~~~~V~~cDm~~v--Pl~d~svDvaV 233 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE--RHKVHSFDLV-------------------AVNERVIACDMRNV--PLEDESVDVAV 233 (325)
T ss_pred CceEEEecccchhhhhh---cc--ccceeeeeee-------------------cCCCceeeccccCC--cCccCcccEEE
Confidence 34469999999998875 11 1356666652 12334566777663 23468999999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe-cccccchh
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN-MAESMWLH 263 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~-~~~s~~~~ 263 (369)
..++..... -.+|+.++.|+|++||.+-+ ...|.+.+
T Consensus 234 ~CLSLMgtn-----~~df~kEa~RiLk~gG~l~IAEv~SRf~d 271 (325)
T KOG3045|consen 234 FCLSLMGTN-----LADFIKEANRILKPGGLLYIAEVKSRFSD 271 (325)
T ss_pred eeHhhhccc-----HHHHHHHHHHHhccCceEEEEehhhhccc
Confidence 766543222 25799999999999998854 34444433
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.56 E-value=0.028 Score=48.35 Aligned_cols=87 Identities=20% Similarity=0.345 Sum_probs=56.6
Q ss_pred EEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCC-CCCCC----ccccccHHHHHH
Q 017607 168 LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS-DPVGP----AQELVEKPFFDT 242 (369)
Q Consensus 168 ~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~-~p~~~----~~~L~~~ef~~~ 242 (369)
+|.+.||.++.++.+++.+..... ..+++++.+.=....+-.++++.|+++.++- -|.+. -..-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~---~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL---EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC---CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 589999999999999999876532 2489999876544332223248999997742 23221 112235678999
Q ss_pred HHHhccCCceEEecc
Q 017607 243 IAKALRPGGVLCNMA 257 (369)
Q Consensus 243 ~~~~LkpgGilv~~~ 257 (369)
+.+.|+|||++++..
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999988654
No 256
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.018 Score=55.48 Aligned_cols=88 Identities=24% Similarity=0.279 Sum_probs=67.3
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
+|++..+.. ......+|.=.|.|+.++.+++..+ ..+++++|-||.+++.|++.+... ++|++++++....
T Consensus 13 ~E~i~~L~~---~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLAP---KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhccc---CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHH
Confidence 555554422 2346899999999999999998754 567999999999999999988755 5799999998665
Q ss_pred HHh---hCCCCCccEEEEcC
Q 017607 208 FLR---QVPRGKYDAIIVDS 224 (369)
Q Consensus 208 ~l~---~~~~~~fDvIi~D~ 224 (369)
+.. ....+++|-|+.|+
T Consensus 85 l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 85 LAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHhcCCCceeEEEEec
Confidence 433 22345899999884
No 257
>PRK11524 putative methyltransferase; Provisional
Probab=96.46 E-value=0.017 Score=55.55 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=46.4
Q ss_pred CCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCC----cc-----c---cccHHHHHHHHHhccCCceEEecc
Q 017607 195 DPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----AQ-----E---LVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 195 ~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~----~~-----~---L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
....+++.+|+.++++..++++||+||+|.+-..+. .. . -+..+++..+.++|||||.+++..
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 456689999999998877778999999887643210 00 0 112468899999999999998754
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.042 Score=50.02 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=83.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDv 219 (369)
....+||=+|..+|++...++.--+...|.+||.++.+.+-.-.-.. +.+|+--+.+||+..-+-. --+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~------~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE------KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH------hCCCceeeecccCCcHHhhhhcccccE
Confidence 45779999999999999999987666789999999987652221111 1367778889987532211 0246999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceE--Eeccccc---chhhhHHHHHHHHHHHH
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL--CNMAESM---WLHTHLIEDMISICRET 277 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGil--v~~~~s~---~~~~~~~~~i~~~l~~~ 277 (369)
|+.|...|... +-+..++..-|+++|.+ ++-+-|. -.....+++-.+.+++.
T Consensus 149 iy~DVAQp~Qa------~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 149 IYQDVAQPNQA------EILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred EEEecCCchHH------HHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 99998876543 23667888899999944 4433222 22234566566666654
No 259
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.37 E-value=0.037 Score=55.38 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=93.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
...||||+++.-|+=+.+++.. ..-..|.+-|.+..-+...+.++..++. .+..+...|+.+|-...-..+||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv----~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV----TNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC----CceEEEccCcccccccccCccccee
Confidence 4579999999988888777653 2335799999999999999999888743 4678888999887433223489999
Q ss_pred EEcCCCCC-CCc--cc---------------cccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 221 IVDSSDPV-GPA--QE---------------LVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 221 i~D~~~p~-~~~--~~---------------L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
++|++..- +.. .. -+.++.+..+...+++||+||-.+.+... +.-..+++..-.-|+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~--~ENE~vV~yaL~K~p 391 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV--EENEAVVDYALKKRP 391 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch--hhhHHHHHHHHHhCC
Confidence 99986532 110 00 23467888899999999999977665432 233555555555666
No 260
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.35 E-value=0.0047 Score=57.62 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=51.5
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCC-----CCCEEEEEcchHHHHhhCCCCCcc
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE-----DPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~-----~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
.+|||.=+|-|.=+..++..+ .+|+++|-+|.+..+.+.=+......-+ -.|++++.+|+.+||+ .+.++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--S
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCC
Confidence 489999999999998887653 5899999999999887764433321111 1489999999999997 4467999
Q ss_pred EEEEcCCCCC
Q 017607 219 AIIVDSSDPV 228 (369)
Q Consensus 219 vIi~D~~~p~ 228 (369)
+|++|.-.|.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9998865544
No 261
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.35 E-value=0.024 Score=53.86 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=61.1
Q ss_pred CCCEEEEEeCc--ccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCC--EEEEEcchHHH---Hhh--
Q 017607 142 SPKTVLVVGGG--DGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPR--VRLHIGDAVEF---LRQ-- 211 (369)
Q Consensus 142 ~p~~VLdIG~G--~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~r--v~v~~~Da~~~---l~~-- 211 (369)
.-+..|||||| +-....++++. .|..+|+-||+||.++..++..+.. +++ ..++.+|.++- |..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------NPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------TTSEEEEEE--TT-HHHHHCSHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------CCCccEEEEeCCCCCHHHHhcCHH
Confidence 45789999999 44567888763 5678999999999999999988764 345 89999998753 220
Q ss_pred C-----CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 212 V-----PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 212 ~-----~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
. -++..=++++..-. .-+. .---...++.++..|.||..|++..
T Consensus 142 ~~~~lD~~rPVavll~~vLh-~v~D-~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLH-FVPD-DDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp HHCC--TTS--EEEECT-GG-GS-C-GCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred HHhcCCCCCCeeeeeeeeec-cCCC-ccCHHHHHHHHHHhCCCCceEEEEe
Confidence 0 01223344432211 1111 1112578999999999999998654
No 262
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.26 E-value=0.0071 Score=54.66 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..++|||+|.|+|..+...++.. ...|+..|++|..++..+-+...+ .-.+.+...|..- .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g-----~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG-----SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC-----CCcceeEEE
Confidence 46899999999999999988875 578999999999988887776554 3467778777543 246799999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
. .|-.+.. -+....+. .++.|+..|..++
T Consensus 148 a--gDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 148 A--GDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred e--eceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 4 3322211 11122344 7778888887765
No 263
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.19 E-value=0.047 Score=54.01 Aligned_cols=98 Identities=21% Similarity=0.232 Sum_probs=66.8
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc-chHHHH-hhCCCCCccE
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAVEFL-RQVPRGKYDA 219 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-Da~~~l-~~~~~~~fDv 219 (369)
..+|+++|+|. |.++..+++..+..+|+++|+++.-+++|++++... .+..... |...-+ .......+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCCE
Confidence 34899999996 444466788877889999999999999999966422 1111111 333323 2222236999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|--+- ....++.+.++++++|.+++..
T Consensus 242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEAVG----------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEECCC----------CHHHHHHHHHHhcCCCEEEEEe
Confidence 884321 2347889999999999998654
No 264
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.06 Score=49.93 Aligned_cols=147 Identities=24% Similarity=0.302 Sum_probs=92.8
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC------CCc---EEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH------
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD------SVE---LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV------ 206 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~------~~~---~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~------ 206 (369)
.-+||+|++...|.....+.+.. ..+ +|++||+.+.+ | -+.|.-+++|..
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 45789999999999998887631 112 39999997653 2 245777777753
Q ss_pred HHHhhCCCCCccEEEEcCCCCC-CC--cccccc----HHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCC
Q 017607 207 EFLRQVPRGKYDAIIVDSSDPV-GP--AQELVE----KPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFK 279 (369)
Q Consensus 207 ~~l~~~~~~~fDvIi~D~~~p~-~~--~~~L~~----~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~ 279 (369)
..++-+..++-|+|++|..... +. ..+... ...+.-...+|+|||.||. .++..+-...+...++..|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhh
Confidence 3344444568999999964322 22 111111 2334566778999999995 33445556677888899998
Q ss_pred CCeeEEEEEEee--ccCCcEEEEEeecCCCCCCC
Q 017607 280 GSVHYAWASVPT--YPSGIIGFLICSTEGPHVDF 311 (369)
Q Consensus 280 ~~v~~~~~~vP~--~p~g~w~f~~ask~~~~~~~ 311 (369)
. |.. .-|. -++..-.|++|..-.+|..+
T Consensus 182 k-v~~---~KPrsSR~sSiEaFvvC~~~~pp~g~ 211 (294)
T KOG1099|consen 182 K-VTC---AKPRSSRNSSIEAFVVCLGYCPPEGF 211 (294)
T ss_pred c-eee---ecCCccccccceeeeeecccCCccCC
Confidence 4 332 2232 23345689999765455554
No 265
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.013 Score=51.52 Aligned_cols=110 Identities=16% Similarity=0.086 Sum_probs=67.5
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.++||++|+|- |..+..++..-+...|...|=+++.++..++-...+ ....-.++.+..-+-..-.......+||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n-~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN-MASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc-cccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 57899999994 555556677777889999999999999888754322 0111223333322221111111235899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
. .|-... .-+.....+.++..|+|.|..++.+
T Consensus 109 a--ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 109 A--ADCLFF--DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred e--ccchhH--HHHHHHHHHHHHHHhCcccceeEec
Confidence 4 221111 1124567788999999999866543
No 266
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.02 E-value=0.02 Score=54.36 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=69.2
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
.+.|+++| -+-.++..++-..-.++|.+||||+..+..-.+...+.+. .+++.+.-|.++.+.+.-.++||+++.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~----~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY----NNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc----cchhheeehhcccChHHHHhhCCeeec
Confidence 56799999 4444555554444457999999999999988887766532 468888899887765433468999996
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCC---ceEE
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPG---GVLC 254 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~Lkpg---Gilv 254 (369)
|.+.... . -+.|+..=...|+.- |++-
T Consensus 228 DPpeTi~---a--lk~FlgRGI~tLkg~~~aGyfg 257 (354)
T COG1568 228 DPPETIK---A--LKLFLGRGIATLKGEGCAGYFG 257 (354)
T ss_pred CchhhHH---H--HHHHHhccHHHhcCCCccceEe
Confidence 6543221 1 134666666778776 5553
No 267
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.0085 Score=60.91 Aligned_cols=104 Identities=22% Similarity=0.331 Sum_probs=82.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCC--CCCcc
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVP--RGKYD 218 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fD 218 (369)
++-+||+.=+++|.-+...+++ +.+.+|++-|.++..++..+++...+.. +..++....|+...+-..+ ...||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v---~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV---EDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc---hhhcccccchHHHHHHhccccccccc
Confidence 4668999988999888777765 5678999999999999999998765532 4578899999987664432 36899
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|=+|.+ |.+ ..|++.+.+.++.||+|++-
T Consensus 186 vIDLDPy---Gs~-----s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 186 VIDLDPY---GSP-----SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred eEecCCC---CCc-----cHHHHHHHHHhhcCCEEEEE
Confidence 9987654 443 25999999999999999754
No 268
>PRK13699 putative methylase; Provisional
Probab=95.95 E-value=0.014 Score=54.36 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=44.0
Q ss_pred EEEEEcchHHHHhhCCCCCccEEEEcCCCCCCC----c----c---ccccHHHHHHHHHhccCCceEEec
Q 017607 198 VRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGP----A----Q---ELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 198 v~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~----~----~---~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.+++.+|+.+.++..+++++|+||.|.+-..+. . . .-+..+++++++|+|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 368899999999988889999999886543210 0 0 012346789999999999998863
No 269
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.94 E-value=0.018 Score=49.39 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=53.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHh-----cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISR-----HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k-----~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~ 215 (369)
.++..|+|+|+|-|.+++.++. . +..+|++||.++..++.+.++.......+ ..++++..++...... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS---SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc---cC
Confidence 4577999999999999999988 5 46799999999999999988766553111 2345555555443311 23
Q ss_pred CccEEE
Q 017607 216 KYDAII 221 (369)
Q Consensus 216 ~fDvIi 221 (369)
..++++
T Consensus 99 ~~~~~v 104 (141)
T PF13679_consen 99 PPDILV 104 (141)
T ss_pred CCeEEE
Confidence 455555
No 270
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.052 Score=53.58 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=87.7
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh----
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRHDS----VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ---- 211 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~~~----~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~---- 211 (369)
..+..+|||++..-|+=+..++.... ...|++=|+|+.-+...+..+... ..+++.+...|+..+-..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceecccccccc
Confidence 34667999999999998877765321 237999999999887776655333 245555555555433111
Q ss_pred ---CCCCCccEEEEcCCCCC-CC---cc---------------ccccHHHHHHHHHhccCCceEEeccc--ccchhhhHH
Q 017607 212 ---VPRGKYDAIIVDSSDPV-GP---AQ---------------ELVEKPFFDTIAKALRPGGVLCNMAE--SMWLHTHLI 267 (369)
Q Consensus 212 ---~~~~~fDvIi~D~~~p~-~~---~~---------------~L~~~ef~~~~~~~LkpgGilv~~~~--s~~~~~~~~ 267 (369)
.....||-|++|.+... +. .. +.....++....+.|++||.+|-.+. ||.......
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 12357999999964311 11 01 12234677888999999999996554 555566666
Q ss_pred HHHHHHHHHHCC
Q 017607 268 EDMISICRETFK 279 (369)
Q Consensus 268 ~~i~~~l~~~F~ 279 (369)
.++++.+...|.
T Consensus 309 ~~~L~~~~~~~~ 320 (375)
T KOG2198|consen 309 QEALQKVGGAVE 320 (375)
T ss_pred HHHHHHhcCccc
Confidence 777666665555
No 271
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.76 E-value=0.017 Score=57.43 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
++.+.++-... .+..+++++|||-|...+++.... .+.++++++++.-+..+........ + +.+..++..|..+-
T Consensus 98 ~~~~~~l~~~~-~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~--l-~~k~~~~~~~~~~~ 172 (364)
T KOG1269|consen 98 HEGIVALRESC-FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAY--L-DNKCNFVVADFGKM 172 (364)
T ss_pred hcchHHHhhcC-cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHH--h-hhhcceehhhhhcC
Confidence 44444433222 234489999999999999998774 4678999998887776665433221 1 33455577775543
Q ss_pred HhhCCCCCccEEEE-cCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 209 LRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 209 l~~~~~~~fDvIi~-D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
. .+++.||.+-+ |....... ....|++++++++|||.+++.
T Consensus 173 ~--fedn~fd~v~~ld~~~~~~~-----~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 173 P--FEDNTFDGVRFLEVVCHAPD-----LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred C--CCccccCcEEEEeecccCCc-----HHHHHHHHhcccCCCceEEeH
Confidence 2 34678998873 33322211 346899999999999999863
No 272
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.75 E-value=0.051 Score=55.40 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=73.0
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE--
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV-- 222 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~-- 222 (369)
++|.+|||.-.+...+-+- +...|+.+|+|+.+++........ ..+-..+...|..... .++++||+||-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~--fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV--FEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc--CCCcceeEEEecC
Confidence 8999999998777766554 457899999999999977664321 2467888888877653 35678999983
Q ss_pred --cCCCCCCCc--cccccHHHHHHHHHhccCCceEEecc
Q 017607 223 --DSSDPVGPA--QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 223 --D~~~p~~~~--~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|.......+ ....-...+..+.++|+++|+++..+
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332221111 01123456789999999999976543
No 273
>PTZ00357 methyltransferase; Provisional
Probab=95.75 E-value=0.058 Score=57.09 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=67.9
Q ss_pred EEEEEeCcccHHHHHHHhcC----CCcEEEEEECCHHHHHHHHh---hchhhcC--CCCCCCEEEEEcchHHHHhhC---
Q 017607 145 TVLVVGGGDGGVLREISRHD----SVELIDICEIDKMVIDVSKK---YFPELAV--GFEDPRVRLHIGDAVEFLRQV--- 212 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~----~~~~V~~VEid~~vi~~ar~---~~~~~~~--~~~~~rv~v~~~Da~~~l~~~--- 212 (369)
.|+++|+|=|-+....++.. -..+|.+||-++..+...+. +...+.. ..-+.+|+++..|++.|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999998876642 23479999999653333322 2333421 011457999999999983211
Q ss_pred ----C--CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccC----Cce
Q 017607 213 ----P--RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRP----GGV 252 (369)
Q Consensus 213 ----~--~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkp----gGi 252 (369)
+ -+++|+||+.+-...+ ..-.++|-+..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFG--DNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLG--DNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccc--cccCCHHHHHHHHHhhhhhcccccc
Confidence 0 1379999965432222 223356788888888876 776
No 274
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.082 Score=49.30 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=69.8
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
...+.+..+. ...+.+||||.-+|+++..++... .++|.+||..-..+..--+ .|+|+.++..-=..+
T Consensus 68 ~~ale~F~l~--~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 68 EKALEEFELD--VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHhcCcC--CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhh
Confidence 4555665543 567899999999999999988874 6899999987554432111 267877765543333
Q ss_pred Hhh-CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 209 LRQ-VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 209 l~~-~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+.. .-.+..|+|++|.+.-. -...+..+...|+|+|.++.
T Consensus 136 l~~~~~~~~~d~~v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSFIS-------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCHHHcccCCCeEEEEeehhh-------HHHHHHHHHHhcCCCceEEE
Confidence 321 11247899999976411 12355666667777766553
No 275
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.61 E-value=0.0039 Score=56.82 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=67.8
Q ss_pred HHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 128 YQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 128 Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
++..++.---.....|.++||||.|+|-++..++.+. ++|.+.|++..|....++. +.+++ -..+
T Consensus 98 F~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl--~~~e 162 (288)
T KOG3987|consen 98 FRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVL--TEIE 162 (288)
T ss_pred HHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCcee--eehh
Confidence 3555543211123457899999999999998888775 6799999999998766552 12222 1245
Q ss_pred HHhhCCCCCccEEEE-cCCCCCCCccccccHHHHHHHHHhccC-CceEEe
Q 017607 208 FLRQVPRGKYDAIIV-DSSDPVGPAQELVEKPFFDTIAKALRP-GGVLCN 255 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~-D~~~p~~~~~~L~~~ef~~~~~~~Lkp-gGilv~ 255 (369)
|++. +-+||+|.+ +.-|-...+ -..++.+..+|+| +|.+++
T Consensus 163 w~~t--~~k~dli~clNlLDRc~~p-----~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 163 WLQT--DVKLDLILCLNLLDRCFDP-----FKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hhhc--CceeehHHHHHHHHhhcCh-----HHHHHHHHHHhccCCCcEEE
Confidence 6543 357999883 111111111 2468899999999 887664
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.35 E-value=0.098 Score=48.90 Aligned_cols=121 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHH----HHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKM----VIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPR 214 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~----vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~ 214 (369)
+...+||=+|.++|.....+..- .+..-|.+||.++. .+..|++ .+++--+++|++..-+- ..-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 45679999999999999888875 45567999999864 4445544 36788889998754221 011
Q ss_pred CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc-----cccchhhhHHHHHHHHHHHH
Q 017607 215 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA-----ESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~-----~s~~~~~~~~~~i~~~l~~~ 277 (369)
.-.|+|+.|.+.|... +-..-++...||+||-+++.. ++.......+..-.+.|++.
T Consensus 225 gmVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee 286 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEE 286 (317)
T ss_pred eeEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHh
Confidence 3689999888766532 112335666899999888643 22333344555555555543
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.34 E-value=0.089 Score=51.78 Aligned_cols=94 Identities=24% Similarity=0.240 Sum_probs=63.5
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+.++|+++|.| -|..+..+++... .+|+++|++++-.+.|++.-... -++....|..+-++ +.+|+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~-------~i~~~~~~~~~~~~----~~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH-------VINSSDSDALEAVK----EIADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE-------EEEcCCchhhHHhH----hhCcE
Confidence 346799999976 4566677788654 89999999999999999863211 11111133333332 34999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
||.-.. . .-+....+.|+++|.+++..
T Consensus 233 ii~tv~---~--------~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG---P--------ATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC---h--------hhHHHHHHHHhcCCEEEEEC
Confidence 996432 1 24677888999999998754
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.021 Score=49.48 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=55.4
Q ss_pred HHHHHhccccCCCCC-CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH
Q 017607 129 QEMIAHLPLCSIPSP-KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE 207 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p-~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~ 207 (369)
.|.+.++.-....++ .+.+|||.|+|.+....+++. ...-++||++|-.+..+|-+.-..+. ..+..+...|.++
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~---~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC---AKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc---ccchhhhhhhhhh
Confidence 566666532223344 689999999999999999886 45789999999999998876443333 3467777777766
Q ss_pred H
Q 017607 208 F 208 (369)
Q Consensus 208 ~ 208 (369)
+
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 5
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.24 E-value=0.13 Score=53.46 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=63.2
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-CCCCCCC------EEEEEcchH----HHH
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-VGFEDPR------VRLHIGDAV----EFL 209 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~~~~~r------v~v~~~Da~----~~l 209 (369)
.+.+|+++|+|. |..+...++..+. +|+++|++++..+.+++.=...- ....+.. ++....|.. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 578999999985 4455566777654 79999999999999988421100 0000000 000111211 111
Q ss_pred hhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 210 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.+. -+.+|+||.-...|..+...+ +.+.+.+.++|||+++..
T Consensus 243 ~~~-~~gaDVVIetag~pg~~aP~l----it~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 243 AEQ-AKEVDIIITTALIPGKPAPKL----ITAEMVASMKPGSVIVDL 284 (509)
T ss_pred Hhc-cCCCCEEEECCCCCcccCcch----HHHHHHHhcCCCCEEEEE
Confidence 111 136999996554444333222 247888899999998754
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.14 E-value=0.16 Score=50.67 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc-hHHHHhhC-CCCCc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD-AVEFLRQV-PRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D-a~~~l~~~-~~~~f 217 (369)
.+..+||++|+|. |..+..+++..+..+|++++.+++..+.++++... ..+.....| ..+.+... ..+.+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3467899999887 77888888887666799999999999999886421 112222222 33333332 23469
Q ss_pred cEEEEcCCCCCC------Cc------cccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVG------PA------QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~------~~------~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+- ...... .. ..-.....++.+.+.|+++|.++...
T Consensus 256 D~vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 98874 221100 00 00002346788899999999998754
No 281
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.88 E-value=0.068 Score=51.14 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=85.7
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcC
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 224 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 224 (369)
+|+++-||.|++...+.+.. ...+.++|+|+..++..+++++.. ++.+|..++........+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 69999999999988877654 677899999999999999987631 5567766654321024699999775
Q ss_pred CCCCC-----------CccccccHHHHHHHHHhccCCceEEecccccch--hhhHHHHHHHHHHHHCCCCeeEEEEEEee
Q 017607 225 SDPVG-----------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWL--HTHLIEDMISICRETFKGSVHYAWASVPT 291 (369)
Q Consensus 225 ~~p~~-----------~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~--~~~~~~~i~~~l~~~F~~~v~~~~~~vP~ 291 (369)
+.... +...|+ .++++ +.+.++|.=+++=++..... ....+..+.+.+.+. ...+.+....-..
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~-GY~~~~~~l~a~~ 147 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLF-FEIIR-ILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEEL-GYNVYWKLLNASD 147 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHH-HHHHH-HHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhC-CcEEEEEEEEHHH
Confidence 43211 011122 23443 44456887555544332221 123455666666543 1123332222222
Q ss_pred ccC---CcEEEEEeecCC
Q 017607 292 YPS---GIIGFLICSTEG 306 (369)
Q Consensus 292 ~p~---g~w~f~~ask~~ 306 (369)
|.. -.-.|++|.++.
T Consensus 148 ~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 148 YGVPQNRERVFIIGIRKD 165 (275)
T ss_pred cCCCCCCcEEEEEEEeCC
Confidence 310 234688888753
No 282
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.88 E-value=0.01 Score=56.20 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCC------------C-------------C
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFE------------D-------------P 196 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~------------~-------------~ 196 (369)
++.++||||+|.-.. ..+.......+|++.|..+.-.+..++++..- .+++ . .
T Consensus 56 ~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456899999997333 22222223578999999999999888887553 2211 0 0
Q ss_pred CEE-EEEcchHHH--Hhh--CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 197 RVR-LHIGDAVEF--LRQ--VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 197 rv~-v~~~Da~~~--l~~--~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.|+ ++..|..+. +.. .-+.+||+|++-..........--....++.+.++|||||.|++.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 122 445554331 111 002359988854321110011111345678899999999999864
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.23 Score=48.52 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=60.6
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..++||++|+| -|..+..+++..+..+|++++.+++-++.+++. ... .-+.....|..+..+. .+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~------~vi~~~~~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD------KLVNPQNDDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc------EEecCCcccHHHHhcc--CCCCCEE
Confidence 46789999864 344455667776666899999999999999874 211 0011111233333322 2359988
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+ |.. +. ...++.+.+.|+++|.++...
T Consensus 240 i-d~~---G~------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 F-EVS---GH------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred E-ECC---CC------HHHHHHHHHHhhcCCEEEEEc
Confidence 7 332 21 235778889999999998654
No 284
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.71 E-value=0.19 Score=46.69 Aligned_cols=108 Identities=18% Similarity=0.225 Sum_probs=67.5
Q ss_pred hhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHH--HHhcCCCcEEEEE--ECCHHHHHHHHhhchhhcCCCCCCCEEE
Q 017607 125 ECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRL 200 (369)
Q Consensus 125 e~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~V--Eid~~vi~~ar~~~~~~~~~~~~~rv~v 200 (369)
+.+|.+-.-++|....-+.++||+||||.=+.-+. |++.. ++|++| ++++++.++++ ..++++
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~-----------~~~i~~ 73 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKK-----------YGNLKL 73 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEE
Confidence 34566666677776666788999999998665433 34443 566666 88888876543 246788
Q ss_pred EEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 201 HIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 201 ~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+..+...- .. ..+++||....| .+.-+.+++.-+..|+++..++.
T Consensus 74 ~~r~~~~~--dl--~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 74 IKGNYDKE--FI--KDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EeCCCChH--Hh--CCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 77654321 11 347888864432 23445566666666888876544
No 285
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.63 E-value=0.34 Score=48.42 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=56.4
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+.+|++||+| .|..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+...+.+.. ..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~l~~~l--~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYEIEDAV--KRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHHHHHHH--ccCCEE
Confidence 46789999987 3444444455544 3799999998877665544321 1222222222222222 368999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|....-+......+.+.+.+ +.++++++++--
T Consensus 235 I~a~~~~g~~~p~lit~~~l----~~mk~g~vIvDv 266 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLV----AQMKPGAVIVDV 266 (370)
T ss_pred EEccccCCCCCCcCcCHHHH----hcCCCCCEEEEE
Confidence 96542222222335555544 457999888743
No 286
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.61 E-value=0.23 Score=48.39 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=64.6
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccE
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDv 219 (369)
...+||++|+|. |..+..+++..+..+|+.+|+++.-+++||+ |..-... ...+-. ...+..+.++.. ....+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~-~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTD-PSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEe-eccccc-cHHHHHHHHHhhccccCCCe
Confidence 456999999995 5556667888888999999999999999999 4321100 000001 223444444432 2245898
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
.|-.+- . ..-++.....++.+|.+++
T Consensus 246 ~~dCsG----~------~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 246 TFDCSG----A------EVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred EEEccC----c------hHHHHHHHHHhccCCEEEE
Confidence 873221 1 1246777889999999554
No 287
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.51 E-value=0.25 Score=48.81 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
...++||++|+|. |.++..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.....+.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GA------TATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CC------ceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3467899998642 44455567776555799999999999988764 21 1111111234344444332336998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
||- .. +. ...++.+.+.|+++|.++...
T Consensus 263 vid-~~---G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFE-MA---GS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEE-CC---CC------hHHHHHHHHHHhcCCEEEEEc
Confidence 873 32 11 235777888999999988643
No 288
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.47 E-value=0.21 Score=43.51 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=82.3
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc--CCCC-CCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA--VGFE-DPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~--~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+|.+||+|.++.+....-.....+|+....+++.++..++.-.... .+.. ..++.+ ..|..+.++ .-|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~-----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE-----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT-----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC-----cccEEE
Confidence 6889999999888764322223689999999988887766422110 0111 124544 577666653 468999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccC----C-c
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPS----G-I 296 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~----g-~ 296 (369)
+-.+. ...+++++.+...|+++=.++.-+... .......+.+.+++.++.. .+....=|++.. + .
T Consensus 75 iavPs-------~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~~~-~~~~lsGP~~A~Ei~~~~p 144 (157)
T PF01210_consen 75 IAVPS-------QAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILPIP-RIAVLSGPSFAEEIAEGKP 144 (157)
T ss_dssp E-S-G-------GGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHSSC-GEEEEESS--HHHHHTT--
T ss_pred ecccH-------HHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhhhc-ceEEeeCccHHHHHHcCCC
Confidence 74432 224678999999998777777644332 1222233445556667633 355555576653 1 2
Q ss_pred EEEEEeecC
Q 017607 297 IGFLICSTE 305 (369)
Q Consensus 297 w~f~~ask~ 305 (369)
-.+++||++
T Consensus 145 t~~~~as~~ 153 (157)
T PF01210_consen 145 TAVVIASKN 153 (157)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEecc
Confidence 466677654
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.37 E-value=0.32 Score=50.49 Aligned_cols=122 Identities=20% Similarity=0.266 Sum_probs=77.3
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCC----CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDS----VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD 204 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~----~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 204 (369)
.+.|+++... ....+|+|--||+|+......++.. ...+.+.|+++....+|+.++-..+. +. .+.+..+|
T Consensus 175 ~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi--~~-~~~i~~~d 249 (489)
T COG0286 175 SELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI--EG-DANIRHGD 249 (489)
T ss_pred HHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC--Cc-cccccccc
Confidence 3455554321 2345899999999999888766431 25799999999999999998755433 11 35566666
Q ss_pred hHHHHhh---CCCCCccEEEEcCCCC-C------------------C-Ccccccc-HHHHHHHHHhccCCceEEe
Q 017607 205 AVEFLRQ---VPRGKYDAIIVDSSDP-V------------------G-PAQELVE-KPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 205 a~~~l~~---~~~~~fDvIi~D~~~p-~------------------~-~~~~L~~-~ef~~~~~~~LkpgGilv~ 255 (369)
-..-... ...++||.|+.+.+.. . + ++..--. ..|++.+...|+|||...+
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 4432111 1235799999765442 0 0 0000111 5799999999999885543
No 290
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.26 E-value=0.32 Score=47.74 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCcc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fD 218 (369)
...++||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+... ....+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3467999998643 44455677776655799999999998888763 21 111122223444444332 223699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+ |.. +. ...++.+.+.|+++|.++...
T Consensus 248 ~vi-d~~---g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAV---GR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECC---CC------HHHHHHHHHHhccCCEEEEEC
Confidence 887 332 21 135677788999999998643
No 291
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.14 E-value=0.12 Score=42.67 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=61.0
Q ss_pred cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC-CCccEEEEcCCCCCCC
Q 017607 152 GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKYDAIIVDSSDPVGP 230 (369)
Q Consensus 152 G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~fDvIi~D~~~p~~~ 230 (369)
|-|..+..++++.+ .+|+++|.++.-.+.+++.-... -+.....|..+.+++... ..+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 45788889999876 89999999999999998853211 011112234555555433 47998884321
Q ss_pred ccccccHHHHHHHHHhccCCceEEecc
Q 017607 231 AQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 231 ~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
..+.++.+.++|+++|.+++..
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEES
T ss_pred -----cHHHHHHHHHHhccCCEEEEEE
Confidence 1357889999999999998754
No 292
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.07 E-value=0.089 Score=48.46 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=54.6
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH-HhhCCCCCccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF-LRQVPRGKYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l~~~~~~~fDvIi 221 (369)
+-++||||+=+....... . +.-.|+.+|+.+. ++ .+...|..+. +...+.++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~--~-~~fdvt~IDLns~-----------------~~--~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--S-GWFDVTRIDLNSQ-----------------HP--GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCcccc--c-CceeeEEeecCCC-----------------CC--CceeeccccCCCCCCcccceeEEE
Confidence 359999998765544332 2 2345999999752 12 3456665543 2223457899999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCce
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGV 252 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGi 252 (369)
+.+.-..-|. ..-.-+.++.+.+.|+|+|.
T Consensus 110 ~SLVLNfVP~-p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 110 LSLVLNFVPD-PKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEeeCCC-HHHHHHHHHHHHHHhCCCCc
Confidence 7643322221 11234689999999999999
No 293
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.079 Score=52.03 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=63.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.|+++||+|.|.|..+..+-.- +..++++.+|.++.+-++...-.........+-+..=+..|-..+ . ..+.|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l-p--~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL-P--AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC-C--ccceeehh
Confidence 5789999999998777665443 445789999999987665543221111111122222233332222 1 23579988
Q ss_pred EE-cCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IV-DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~-D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|+ |--.|.+....++ ..++.+...++|||.+|+.
T Consensus 190 i~~~eLl~d~~ek~i~--~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 190 IVLDELLPDGNEKPIQ--VNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hhhhhhccccCcchHH--HHHHHHHHhccCCCeEEEE
Confidence 84 2112223222222 3688999999999988753
No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.04 E-value=0.48 Score=46.17 Aligned_cols=101 Identities=12% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
...++||+.|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+.....+..+..+......+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GA------MQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------ceEecCcccCHHHHHHHhcCCCCCe
Confidence 3567999998643 33344566766555688999999988887653 21 1001111122222222222346886
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++|... . ...+..+.+.|+++|.+++..
T Consensus 232 ~v~d~~G---~------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG---V------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC---C------HHHHHHHHHHhhcCCEEEEEc
Confidence 6666542 1 235778889999999988653
No 295
>PHA01634 hypothetical protein
Probab=94.00 E-value=0.19 Score=42.55 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
..++|+|||++-|..+..++-.. .++|+++|.++...+..+++...+.. -| +.... + +|-.. -+.||+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI--~D-K~v~~-~---eW~~~--Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNI--CD-KAVMK-G---EWNGE--YEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhhee--ee-ceeec-c---ccccc--CCCcceEE
Confidence 56899999999999999987764 67999999999999999987654421 01 11100 1 23222 25799999
Q ss_pred EcCC
Q 017607 222 VDSS 225 (369)
Q Consensus 222 ~D~~ 225 (369)
+|.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 8874
No 296
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.92 E-value=0.59 Score=42.90 Aligned_cols=99 Identities=20% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+||+.|+|+ |..+..+++..+ .+|++++.+++..+.+++.... .-+.....+...-+.....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567999999886 666666777654 6899999999888877654210 011111112222111122357999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+..... ...+..+.+.|+++|.++...
T Consensus 205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9853321 135777888999999998654
No 297
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.89 E-value=0.085 Score=46.73 Aligned_cols=105 Identities=20% Similarity=0.280 Sum_probs=63.5
Q ss_pred EEEeCcccHHHHHHHhcCC-CcEEEEEECCHH--HHHHHH---hhchhhcCCCCCCCEEEE-EcchHHHHhhC--CCCCc
Q 017607 147 LVVGGGDGGVLREISRHDS-VELIDICEIDKM--VIDVSK---KYFPELAVGFEDPRVRLH-IGDAVEFLRQV--PRGKY 217 (369)
Q Consensus 147 LdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~--vi~~ar---~~~~~~~~~~~~~rv~v~-~~Da~~~l~~~--~~~~f 217 (369)
|.||=|+-..+..|+++.+ ..++++.-.|.+ +.+... +++..+ ....++++ --|+.+.-+.. ..++|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L----~~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL----RELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH----hhcCCccccCCCCCcccccccccCCcC
Confidence 6789999999999998755 567777666554 333211 222222 23344443 34555433222 34789
Q ss_pred cEEEEcCCCCCCC---------ccccccHHHHHHHHHhccCCceEEe
Q 017607 218 DAIIVDSSDPVGP---------AQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 218 DvIi~D~~~p~~~---------~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
|.||.+.+..-.. .....-..||+.+.++|+++|.+.+
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhV 123 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHV 123 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999877654311 0111226799999999999996643
No 298
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=93.85 E-value=0.52 Score=50.33 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=87.5
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEE---EECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc--------h-----
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDI---CEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD--------A----- 205 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~---VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D--------a----- 205 (369)
.++..|..|-|+|+++..+++.++..+++. .|++...+.-+.-.-|..=....+.+-+.+..| .
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 467899999999999999999987777654 555555443221111100001112233333222 1
Q ss_pred HHHH---hhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCe
Q 017607 206 VEFL---RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSV 282 (369)
Q Consensus 206 ~~~l---~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v 282 (369)
.++. +....-++|+|++|.--.............-+.+.+.|.++|.++.-+.-.... ..-..++..+...|+ .|
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F~-~V 479 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYFK-SV 479 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhcC-ce
Confidence 2222 222235799999997532222111223334456667889999999765321111 112357788899999 56
Q ss_pred eEEEEEEeeccCCcEEEEEeecC
Q 017607 283 HYAWASVPTYPSGIIGFLICSTE 305 (369)
Q Consensus 283 ~~~~~~vP~~p~g~w~f~~ask~ 305 (369)
....+..-+--+- -.++++++.
T Consensus 480 ~l~qT~~SSs~TS-EVYlv~~~~ 501 (675)
T PF14314_consen 480 ELVQTQFSSSFTS-EVYLVFQKL 501 (675)
T ss_pred EEEECCCCCCCce-EEEEEEecc
Confidence 5543333222111 347777764
No 299
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.65 E-value=1.6 Score=41.12 Aligned_cols=118 Identities=21% Similarity=0.278 Sum_probs=70.5
Q ss_pred EEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccEEEEcC
Q 017607 147 LVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVDS 224 (369)
Q Consensus 147 LdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDvIi~D~ 224 (369)
|..=.|+=.+++.+++.. .+.+.+|+-|.-.+..+++|.. +.+++++..|+++-+... +..+=-+|++|.
T Consensus 62 l~~YPGSP~ia~~llR~q--Drl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQ--DRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TT--SEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCcc--ceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 566678888888888763 6899999999999999988763 579999999999987653 234567899886
Q ss_pred CCCCCCccccccHHHHHHHHHhcc--CCceEEecccccchhhhHHHHHHHHHHHHC
Q 017607 225 SDPVGPAQELVEKPFFDTIAKALR--PGGVLCNMAESMWLHTHLIEDMISICRETF 278 (369)
Q Consensus 225 ~~p~~~~~~L~~~ef~~~~~~~Lk--pgGilv~~~~s~~~~~~~~~~i~~~l~~~F 278 (369)
+--... - .....+.+.++++ +.|+++++- |.......+.+.+.+++.-
T Consensus 134 pYE~~~---d-y~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~~~~~~~l~~~~ 183 (245)
T PF04378_consen 134 PYEQKD---D-YQRVVDALAKALKRWPTGVYAIWY--PIKDRERVDRFLRALKALG 183 (245)
T ss_dssp ---STT---H-HHHHHHHHHHHHHH-TTSEEEEEE--EESSHHHHHHHHHHHHHH-
T ss_pred CCCCch---H-HHHHHHHHHHHHHhcCCcEEEEEe--ecccHHHHHHHHHHHHhcC
Confidence 532211 1 2234445555555 689888764 4455566777888887763
No 300
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.65 E-value=0.52 Score=45.67 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=62.1
Q ss_pred CEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 144 KTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 144 ~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++||+.|+ |-|..+..++++.+..+|++++-+++-.+.+++.+.. +.-+.....|..+.++...++.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999984 6677777888886544799999988887777664431 111111123444444433335699887
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|... . ..++.+.+.|+++|.++...
T Consensus 230 -d~~g---~-------~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 -DNVG---G-------EISDTVISQMNENSHIILCG 254 (345)
T ss_pred -ECCC---c-------HHHHHHHHHhccCCEEEEEe
Confidence 3321 1 12467888999999998643
No 301
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.49 E-value=1.3 Score=40.83 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=60.1
Q ss_pred HHHHHhccccCCCCCCEEEEEeCccc----HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDG----GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD 204 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G----~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D 204 (369)
.|.+..++. --+.+.++++.++.| .++..++.+....+++.|-.|+.-....++.+...+. .+-++|+++|
T Consensus 30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~---~~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL---SDVVEFVVGE 104 (218)
T ss_pred HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc---cccceEEecC
Confidence 455554433 246678888865544 3344444444567899999999888888887765422 2457999998
Q ss_pred h-HHHHhhCCCCCccEEEEcCC
Q 017607 205 A-VEFLRQVPRGKYDAIIVDSS 225 (369)
Q Consensus 205 a-~~~l~~~~~~~fDvIi~D~~ 225 (369)
. .+.+... ...|++++|+-
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~ 124 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCK 124 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCC
Confidence 5 4566655 46999999985
No 302
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.36 E-value=0.12 Score=52.04 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=63.6
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcC
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDS 224 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 224 (369)
-|||||.|+|.+....++.. ...|+++|.-..|.+.|++-..+. ++. .+++++..-..+.- .-+..+-|+++...
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~S-dkI~vInkrStev~-vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GMS-DKINVINKRSTEVK-VGGSSRADIAVRED 143 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CCc-cceeeeccccceee-ecCcchhhhhhHhh
Confidence 59999999999998888876 568999999999999999976544 344 46777765433321 11112366666444
Q ss_pred CCCCCCccccccHHHHHHHHHhccCCce
Q 017607 225 SDPVGPAQELVEKPFFDTIAKALRPGGV 252 (369)
Q Consensus 225 ~~p~~~~~~L~~~ef~~~~~~~LkpgGi 252 (369)
++..-..+.. ..-|+.+.++|...|.
T Consensus 144 fdtEligeGa--lps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 144 FDTELIGEGA--LPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhcccc--chhHHHHHHHhcccCC
Confidence 4422111110 1236677776665553
No 303
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.35 E-value=2 Score=38.57 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=67.6
Q ss_pred EEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhchhhcC-C--------CCCCCEEEEEcchHHHHhhCC
Q 017607 145 TVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAV-G--------FEDPRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~--------~~~~rv~v~~~Da~~~l~~~~ 213 (369)
+|-+||.|-=++... +++.+ -+|+++|+|++.++..++-...... + ....|+.+. .|..+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 688999885444443 44443 6899999999999887653211100 0 012233332 3434333
Q ss_pred CCCccEEEEcCCCCCCC---ccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHH-HHHHHCCCCeeEEEEEE
Q 017607 214 RGKYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMIS-ICRETFKGSVHYAWASV 289 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~---~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~-~l~~~F~~~v~~~~~~v 289 (369)
...|++++..+.|... +..-+-....+.+.+.|+++-++++.+.-+.. ..+++.. .+.+.-.....++.++.
T Consensus 75 -~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG---tt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 75 -KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG---TTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp -HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT---HHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred -hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe---eehHhhhhhhhhhcccccCCeEEEC
Confidence 2478888776655432 22223356788899999998888887654433 2332332 23333221245666777
Q ss_pred eec
Q 017607 290 PTY 292 (369)
Q Consensus 290 P~~ 292 (369)
|.+
T Consensus 151 PEr 153 (185)
T PF03721_consen 151 PER 153 (185)
T ss_dssp ---
T ss_pred CCc
Confidence 776
No 304
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.35 E-value=0.47 Score=46.53 Aligned_cols=98 Identities=26% Similarity=0.352 Sum_probs=64.8
Q ss_pred CCCCEEEEEe--CcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCC-CCc
Q 017607 141 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPR-GKY 217 (369)
Q Consensus 141 ~~p~~VLdIG--~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~-~~f 217 (369)
+..++||+.| +|-|.++..++|+... .++++--+++-.+.+++.-. +.-+++...|..+-+++... ..+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA-------d~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA-------DHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC-------CEEEcCCcccHHHHHHHHcCCCCc
Confidence 3468999999 5667888889998755 55555555555556666543 22344555666555554433 369
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+ |+.+. +.+....+.|+++|.++...
T Consensus 213 Dvv~----D~vG~-------~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVL----DTVGG-------DTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEE----ECCCH-------HHHHHHHHHhccCCEEEEEe
Confidence 9987 22332 46777899999999998754
No 305
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.32 E-value=0.071 Score=49.22 Aligned_cols=59 Identities=31% Similarity=0.475 Sum_probs=47.1
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.-|.+||.|.|++++.++... .++..+||+|+..+.-.+- +.+. .+.++.++++|+..|
T Consensus 52 ~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~-L~EA----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQM-LSEA----APGKLRIHHGDVLRF 110 (326)
T ss_pred ceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHH-Hhhc----CCcceEEecccccee
Confidence 469999999999999999874 6799999999998876543 2222 246899999998765
No 306
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.13 E-value=0.047 Score=52.11 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
..-+||+|||.|-... .. |...+.++|+....+..||+-- ...+...|+.... .++.+||.++.
T Consensus 46 gsv~~d~gCGngky~~---~~-p~~~~ig~D~c~~l~~~ak~~~----------~~~~~~ad~l~~p--~~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG---VN-PLCLIIGCDLCTGLLGGAKRSG----------GDNVCRADALKLP--FREESFDAALS 109 (293)
T ss_pred cceeeecccCCcccCc---CC-CcceeeecchhhhhccccccCC----------CceeehhhhhcCC--CCCCccccchh
Confidence 4579999999996432 22 4567999999999988887631 1267788887753 23578999985
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
-+.-.. .....-....++++.+.|+|||...+.+
T Consensus 110 iavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHH-LSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 433211 1222334678999999999999876554
No 307
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.84 E-value=1.3 Score=41.86 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=58.5
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCccE
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDv 219 (369)
..++||++|+| -|.++..+++..+..+|+++|.+++-.+.+++.-... -+. ..+..+.+.. .....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~-------~i~--~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA-------LAE--PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE-------ecC--chhhHHHHHHHhCCCCCCE
Confidence 45789999864 3334455677766556999999999888887742100 000 0111122222 12346998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+- .. +. ...++.+.+.|+++|.++...
T Consensus 191 vid-~~---G~------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALE-FS---GA------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEE-CC---CC------hHHHHHHHHHhcCCCEEEEec
Confidence 873 22 11 235778889999999998654
No 308
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=0.16 Score=48.00 Aligned_cols=113 Identities=23% Similarity=0.180 Sum_probs=79.8
Q ss_pred CEEEEEeCcccHHHHHHHhcC------------CCcEEEEEECCHHHHHHHH-------------hhchhhcC-------
Q 017607 144 KTVLVVGGGDGGVLREISRHD------------SVELIDICEIDKMVIDVSK-------------KYFPELAV------- 191 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~------------~~~~V~~VEid~~vi~~ar-------------~~~~~~~~------- 191 (369)
-.|+++|.|+|...+.+.+.. ...+++++|.+|.....++ +..+....
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 368889999999887765532 1235778888765433222 11111100
Q ss_pred -CC-CCCCEEEEEcchHHHHhhCCCC--CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 192 -GF-EDPRVRLHIGDAVEFLRQVPRG--KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 192 -~~-~~~rv~v~~~Da~~~l~~~~~~--~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+ ..-.+.++++|+.+.+...... ++|+.+.|.+.|...+ .+++.+++..+++..++||.+++.+
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceechH
Confidence 12 2346788999999988765321 7999999999988777 7899999999999999999999754
No 309
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.54 E-value=0.1 Score=51.03 Aligned_cols=112 Identities=18% Similarity=0.131 Sum_probs=74.5
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHH-------HhhchhhcCCCCCCCEEEEEcchHHHHhhCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVS-------KKYFPELAVGFEDPRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~a-------r~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~ 213 (369)
.+.+-|+|==-|+|+++...++.+ +-|.+.|||-.++... +.+|.+.+. .+.-+.++.+|.-.-.-..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhh-
Confidence 456789999999999988887764 6899999999999843 345555432 2334778888865432111
Q ss_pred CCCccEEEEcCCCCCCCc------------------------cccc-----cHHHHHHHHHhccCCceEEecc
Q 017607 214 RGKYDAIIVDSSDPVGPA------------------------QELV-----EKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~------------------------~~L~-----~~ef~~~~~~~LkpgGilv~~~ 257 (369)
...||+||+|.+-.+... ...+ -.+.+.-..++|..||.++.+.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 468999999875432110 0011 1245567788999999999764
No 310
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.52 E-value=1 Score=43.53 Aligned_cols=98 Identities=24% Similarity=0.222 Sum_probs=58.2
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCccE
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDv 219 (369)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ .+.+.+ .....+|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GA------DFVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEEcCCcch-HHHHHHHhCCCCCCE
Confidence 467999997642 33334566776555599999999988888664 21 1111111122 222222 22346998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+- .. + ....+..+.+.|+++|.++...
T Consensus 235 vid-~~---g------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIE-CS---G------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEE-CC---C------CHHHHHHHHHHhhcCCEEEEEc
Confidence 873 22 1 1234667788999999998654
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.46 E-value=1 Score=46.95 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCEEEEEeCccc-HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCC--------CCEEEEEcchHH----H
Q 017607 142 SPKTVLVVGGGDG-GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED--------PRVRLHIGDAVE----F 208 (369)
Q Consensus 142 ~p~~VLdIG~G~G-~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~--------~rv~v~~~Da~~----~ 208 (369)
.+.+||++|+|.= ..+..+++..+ ..|+++|.+++..+.+++ ++.....++. .-.+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4689999998854 44444566543 469999999999988887 3211000000 001111112111 1
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
+.+. -..+|+||...--|..+.+.|.+++ +.+.+|||++++
T Consensus 241 ~~e~-~~~~DIVI~TalipG~~aP~Lit~e----mv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQ-AKEVDIIITTALIPGKPAPKLITEE----MVDSMKAGSVIV 281 (511)
T ss_pred HHHH-hCCCCEEEECcccCCCCCCeeehHH----HHhhCCCCCEEE
Confidence 1111 2469999865544444445566654 466788888776
No 312
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.34 E-value=1 Score=43.09 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=61.3
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ .. +.-+.....+....++....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA------DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC------CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 346789998765 3667777787754 4699999999988887653 21 1111111122222232233457998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+- ... ....++.+.+.|+++|.++...
T Consensus 236 vid-~~g---------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFD-FVG---------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEE-CCC---------CHHHHHHHHHHhhcCCEEEEEC
Confidence 773 211 1246788899999999998653
No 313
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.27 E-value=1.1 Score=43.63 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=66.6
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
.+.+|.+||+|- |..+..++--. ...|+..|+|.+-++.....| ..|++.+......+-+.. .++|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f--------~~rv~~~~st~~~iee~v--~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF--------GGRVHTLYSTPSNIEEAV--KKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh--------CceeEEEEcCHHHHHHHh--hhccEE
Confidence 356899999884 44444444433 478999999988887766655 357899888877765443 479999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
|--.--|-.-++.|.++ ++.+.++||.+++
T Consensus 236 IgaVLIpgakaPkLvt~----e~vk~MkpGsViv 265 (371)
T COG0686 236 IGAVLIPGAKAPKLVTR----EMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEecCCCCceehhH----HHHHhcCCCcEEE
Confidence 95432233334455554 5666899999887
No 314
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.97 E-value=0.15 Score=44.15 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDv 219 (369)
-+.-||++|.|.|.+=..+-...+..+|.+.|-.-.. + |.. ..+.-+++.||+++.+... -..+.-+
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~------h-p~~----~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC------H-PSS----TPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG-------GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc------C-CCC----CCchHheeeccHHHHhHHHHhcCCceEE
Confidence 3567999999999999999888888999999863211 1 111 1234568999999887651 1234555
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+-.|.-........-+..-.-..+..+|.|||+++.
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 555553322111111111223466778999999985
No 315
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.85 E-value=0.24 Score=44.71 Aligned_cols=53 Identities=25% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Q 017607 130 EMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKK 184 (369)
Q Consensus 130 e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~ 184 (369)
+++..+..........|||-=+|+|+++.++.+.. .+.+++|++++.+++|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 44444443444567799999999999999988875 679999999999999875
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.77 E-value=1.3 Score=35.93 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=60.0
Q ss_pred EEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCccEEE
Q 017607 146 VLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDAII 221 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~fDvIi 221 (369)
|+++|+| .+++.+++. ....+|+++|.|++.++.+++. .+.++.+|+.+ .+++..-++.|.|+
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5677776 566666542 1235899999999998887763 26789999864 45554446799998
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+...+.. .--......+.+.|...++....+
T Consensus 68 ~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTDDDE-------ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESSSHH-------HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EccCCHH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 7654321 111334555677888888876544
No 317
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.71 E-value=3.4 Score=42.72 Aligned_cols=138 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred EEEEEeCcccHHHHHH--HhcCCCcEEEEEECCHHHHHHHHhhchhhcC-CCC-------CCCEEEEEcchHHHHhhCCC
Q 017607 145 TVLVVGGGDGGVLREI--SRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFE-------DPRVRLHIGDAVEFLRQVPR 214 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l--~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~-------~~rv~v~~~Da~~~l~~~~~ 214 (369)
+|.+||.|-.++...+ ++.....+|+++|+|++.++..++-...... +++ ..++++ ..|..+-+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i----- 76 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV----- 76 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH-----
Confidence 6999999977776663 4443345799999999999987654221110 100 001111 12211111
Q ss_pred CCccEEEEcCCCCCC--------CccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEE
Q 017607 215 GKYDAIIVDSSDPVG--------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAW 286 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~--------~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~ 286 (369)
..-|+||+....|.. .+..-+-.+..+.+.+.|+++-++++.+.-|.... ..+.+.+.+.-+ ...++.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt---~~~~~~l~~~~~-g~~f~v 152 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA---EAIEKILTHNSK-GINFQI 152 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH---HHHHHHHHhhCC-CCCeEE
Confidence 247888876655542 11212335567788888988777776665444332 333344443212 134555
Q ss_pred EEEeec
Q 017607 287 ASVPTY 292 (369)
Q Consensus 287 ~~vP~~ 292 (369)
++-|.+
T Consensus 153 ~~~PEr 158 (473)
T PLN02353 153 LSNPEF 158 (473)
T ss_pred EECCCc
Confidence 666766
No 318
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.67 E-value=1.6 Score=42.18 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=59.9
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fD 218 (369)
++..+||+.|+| .|..+..+++..+...|++++.++...+.+++.- . +.-+.....+..+.+... ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 346789986654 2555666777765457888898888887776531 0 111222223333434332 235699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|+- .. +. ...++.+.+.|+++|.++..
T Consensus 239 ~vld-~~---g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIE-AV---GF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEE-cc---CC------HHHHHHHHHHhhcCCEEEEE
Confidence 8873 21 11 14678888999999998854
No 319
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.53 E-value=1 Score=42.61 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=64.9
Q ss_pred CCCEEEEEeCcccHHHHHH---HhcC--CCcEEEEEECCH--------------------------HHHHHHHhhchhhc
Q 017607 142 SPKTVLVVGGGDGGVLREI---SRHD--SVELIDICEIDK--------------------------MVIDVSKKYFPELA 190 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l---~k~~--~~~~V~~VEid~--------------------------~vi~~ar~~~~~~~ 190 (369)
-|..|+++|+--|+.+..+ ++.. +..++.+.|-=+ ...+..+++|...
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~- 152 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY- 152 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT-
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc-
Confidence 4779999999888766443 3322 345677766311 1344555565544
Q ss_pred CCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 191 VGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 191 ~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++.+++++++.|+..+.+...+.+++-++.+|.- ++.+ +.+.++.++..|.|||++++.-
T Consensus 153 -gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYes----T~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 -GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYES----TKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp -TTSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SHHH----HHHHHHHHGGGEEEEEEEEESS
T ss_pred -CCCcccEEEECCcchhhhccCCCccEEEEEEecc--chHH----HHHHHHHHHhhcCCCeEEEEeC
Confidence 3346799999999988887666667888887752 1211 5678999999999999999854
No 320
>PLN02740 Alcohol dehydrogenase-like
Probab=91.42 E-value=1.6 Score=43.29 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE--cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~Da~~~l~~~~~~~f 217 (369)
...++||++|+|. |..+..+++..+..+|+++|.+++-.+.+++. .. +.-+.... .|..+.+.....+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 3567999998652 33444567776655799999999999988763 21 11111111 123333433322369
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~~ 257 (369)
|+|+- .. +. ...++...+.++++ |.+++..
T Consensus 270 dvvid-~~---G~------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFE-CA---GN------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEE-CC---CC------hHHHHHHHHhhhcCCCEEEEEc
Confidence 98873 22 21 23577777889897 9887643
No 321
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.40 E-value=0.83 Score=46.08 Aligned_cols=102 Identities=21% Similarity=0.164 Sum_probs=72.1
Q ss_pred EEEEecCceeEEEEc-CeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHH
Q 017607 101 LVFESLAYGKVLVLD-GIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVI 179 (369)
Q Consensus 101 ~v~~~~~~G~~l~lD-g~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi 179 (369)
.+++....|-.+-+| |.+....+.. .-||-++. + ...+.-|.|+-||-|-.+.-+++.. .+|++-|++++++
T Consensus 212 ~vtevre~~~~Fk~DfskVYWnsRL~-~Eherlsg--~--fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesi 284 (495)
T KOG2078|consen 212 LVTEVREGGERFKFDFSKVYWNSRLS-HEHERLSG--L--FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESI 284 (495)
T ss_pred eEEEEecCCeeEEEecceEEeeccch-hHHHHHhh--c--cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHH
Confidence 444444445555555 3443332221 12555554 2 2456789999999999999988875 7999999999999
Q ss_pred HHHHhhchhhcCCCCCCCEEEEEcchHHHHhh
Q 017607 180 DVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ 211 (369)
Q Consensus 180 ~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~ 211 (369)
+..+.+.+.... +..+++++..||..|+++
T Consensus 285 k~Lk~ni~lNkv--~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 285 KWLKANIKLNKV--DPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred HHHHHhcccccc--chhheeeecccHHHHhhc
Confidence 999999876533 344599999999999964
No 322
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.39 E-value=1 Score=46.24 Aligned_cols=99 Identities=17% Similarity=0.247 Sum_probs=57.0
Q ss_pred hccccCCCCCCEEEEEeCcccHHHHH--HHhcCCCcEEEEE--ECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH
Q 017607 134 HLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDIC--EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL 209 (369)
Q Consensus 134 ~~~l~~~~~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~V--Eid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l 209 (369)
++|+...-+.++||+||||.=+.-+. +++.. .+|++| ++++++-++++ ..+++++..+...-
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~~~- 68 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFDES- 68 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCChH-
Confidence 45665555788999999997554433 34443 466665 77777655432 24677776554321
Q ss_pred hhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 210 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.. +.+++||....|+ +.-+.+++.-+..|+++..+++
T Consensus 69 -dl--~~~~lv~~at~d~----------~~n~~i~~~a~~~~~lvN~~d~ 105 (457)
T PRK10637 69 -LL--DTCWLAIAATDDD----------AVNQRVSEAAEARRIFCNVVDA 105 (457)
T ss_pred -Hh--CCCEEEEECCCCH----------HHhHHHHHHHHHcCcEEEECCC
Confidence 11 3478887654332 2333444444455777765554
No 323
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.39 E-value=0.25 Score=45.51 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=42.5
Q ss_pred HHHHHHHhccccCCCCCCEEEEEeCcccHHHHHHH--hcCCCcEEEEEECCHHHHHHHHhhchh
Q 017607 127 AYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREIS--RHDSVELIDICEIDKMVIDVSKKYFPE 188 (369)
Q Consensus 127 ~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~--k~~~~~~V~~VEid~~vi~~ar~~~~~ 188 (369)
+|+..+.+++- ..|-.+.|-+||+|.++..+. +......|.+-|||++++++|++|+..
T Consensus 39 i~qR~l~~l~~---~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 39 IFQRALHYLEG---KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHCTSSS----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHhhcC---CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 45666655433 467799999999999987764 344567899999999999999998754
No 324
>PRK11524 putative methyltransferase; Provisional
Probab=91.39 E-value=0.38 Score=46.17 Aligned_cols=57 Identities=14% Similarity=0.027 Sum_probs=45.8
Q ss_pred HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhch
Q 017607 129 QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 187 (369)
Q Consensus 129 ~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~ 187 (369)
.+++..+..........|||-=+|+|+++....+.. .+.+++||+++.+++|++++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHH
Confidence 345555444444567789999999999998887774 689999999999999999875
No 325
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.38 E-value=1.7 Score=42.32 Aligned_cols=99 Identities=25% Similarity=0.307 Sum_probs=61.4
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fD 218 (369)
+..++||+.|+| .|..+..+++..+...+++++.+++-.+.++++ .. +.-+.....|..+.+.. .....+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCCc
Confidence 456799999765 344555667777666799999999888888763 21 11111112233332322 2234699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|+-... ....+..+.+.|+++|.++..
T Consensus 238 ~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG----------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCEEEEe
Confidence 8873221 124678889999999998854
No 326
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.14 E-value=3.3 Score=40.60 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=77.1
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCC-CccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRG-KYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~-~fDvIi 221 (369)
.-+++++-+|.|++..-+.... .+-+.++|||+..++.-+.+++. -.++..|..++..+.-.. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 3479999999999987777664 56789999999999999988862 456667776654322112 689999
Q ss_pred EcCCCCC----C-------CccccccHHHHHHHHHhccCCceEEecccccchh-hhHHHHHHHHHHHH
Q 017607 222 VDSSDPV----G-------PAQELVEKPFFDTIAKALRPGGVLCNMAESMWLH-THLIEDMISICRET 277 (369)
Q Consensus 222 ~D~~~p~----~-------~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~-~~~~~~i~~~l~~~ 277 (369)
-..+... + +-..|+ .+ |..+...++|.-.++=++...... ...++.+.+.|.+.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L~-~~-~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~ 138 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSLF-LE-FIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEEL 138 (328)
T ss_pred eCCCCcchhhcCcccCCcCccceee-HH-HHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHc
Confidence 6543321 1 111232 23 445667788844444333332222 23566666666654
No 327
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.13 E-value=3.7 Score=38.79 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=84.0
Q ss_pred EEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC--CCCCccEEEEc
Q 017607 146 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV--PRGKYDAIIVD 223 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDvIi~D 223 (369)
=|..=+|+=.+++.+++.. .++..+|+-|.=....+++|.. +.++++..+|++.-+... +.++=-+|++|
T Consensus 92 ~l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~~------d~~vrv~~~DG~~~l~a~LPP~erRglVLID 163 (279)
T COG2961 92 GLRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFAG------DRRVRVLRGDGFLALKAHLPPKERRGLVLID 163 (279)
T ss_pred CcccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhCC------CcceEEEecCcHHHHhhhCCCCCcceEEEeC
Confidence 3777889999999988763 5899999999999999998862 689999999999887653 33457789887
Q ss_pred CCCCCCCccccccHHHHHHHHHhcc--CCceEEecccccchhhhHHHHHHHHHHHH
Q 017607 224 SSDPVGPAQELVEKPFFDTIAKALR--PGGVLCNMAESMWLHTHLIEDMISICRET 277 (369)
Q Consensus 224 ~~~p~~~~~~L~~~ef~~~~~~~Lk--pgGilv~~~~s~~~~~~~~~~i~~~l~~~ 277 (369)
.+.... .- .....+.+.+.++ ++|+++++- |....+.++++.+.++..
T Consensus 164 PPfE~~---~e-Y~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~~~~f~~~L~~~ 213 (279)
T COG2961 164 PPFELK---DE-YQRVVEALAEAYKRFATGTYAIWY--PIKDRRQIRRFLRALEAL 213 (279)
T ss_pred CCcccc---cH-HHHHHHHHHHHHHhhcCceEEEEE--eecchHHHHHHHHHHhhc
Confidence 653221 11 1223444444444 578888754 445566778888887765
No 328
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=91.13 E-value=1.6 Score=41.34 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=57.0
Q ss_pred hHHHHHHHhcccc--CCCCCCEEEEEeCccc--HH-HHHHHhc-C-CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCE
Q 017607 126 CAYQEMIAHLPLC--SIPSPKTVLVVGGGDG--GV-LREISRH-D-SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRV 198 (369)
Q Consensus 126 ~~Y~e~l~~~~l~--~~~~p~~VLdIG~G~G--~~-~~~l~k~-~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv 198 (369)
..|+.+-..+.-. ..|...|||.+|.|+- .. +..++|+ . ...-++-.||.+-+ . | --
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v--------S-------D-a~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV--------S-------D-AD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------S-SS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc--------c-------c-cC
Confidence 3566666665432 3466779999998852 22 2334443 3 34445556664322 1 2 23
Q ss_pred EEEEcchHHHHhhCCCCCccEEEEcCCCCCC-------CccccccHHHHHHHHHhccCCceEEec-ccccc
Q 017607 199 RLHIGDAVEFLRQVPRGKYDAIIVDSSDPVG-------PAQELVEKPFFDTIAKALRPGGVLCNM-AESMW 261 (369)
Q Consensus 199 ~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~-------~~~~L~~~ef~~~~~~~LkpgGilv~~-~~s~~ 261 (369)
..+.+|...+.. +.+||+||+|..|+.. ....-|..-+..-++..|+-||-+++- ++..|
T Consensus 107 ~~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw 174 (299)
T PF06460_consen 107 QSIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW 174 (299)
T ss_dssp EEEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-
T ss_pred CceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc
Confidence 467789887742 5789999999986531 112223333556678899999987654 45555
No 329
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.13 E-value=2.1 Score=41.51 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=59.8
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc----hHHHHhhCCCC
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD----AVEFLRQVPRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D----a~~~l~~~~~~ 215 (369)
.+.++||+.|+|. |..+..+++..+...|++++-+++-.+.+++. .. +.-+.....+ ..+..+....+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCCC
Confidence 4567999987654 55666678876655588898888877777653 21 1111111112 11222222334
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+|+|+-... . ...++.+.+.|+++|.++...
T Consensus 234 ~~d~vld~~g----~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 234 GPDVVIECTG----A------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCEEEECCC----C------HHHHHHHHHHhhcCCEEEEEc
Confidence 6998884221 1 225778889999999988643
No 330
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.99 E-value=1.8 Score=41.50 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=85.5
Q ss_pred EEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCccEEEEc
Q 017607 145 TVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYDAIIVD 223 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fDvIi~D 223 (369)
+|+++-||.|++..-+.+.. ...+.++|+|+..++.-+.+++ .+..+|..+.-.. .+. .+|+|+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceEEEec
Confidence 68999999999998887765 6789999999999999888873 6778888765322 222 59999965
Q ss_pred CCCCC-CCc----------cccccHHHHHHHHHhccCCceEEecccccchh--hhHHHHHHHHHHHHCCCCeeEEEEEEe
Q 017607 224 SSDPV-GPA----------QELVEKPFFDTIAKALRPGGVLCNMAESMWLH--THLIEDMISICRETFKGSVHYAWASVP 290 (369)
Q Consensus 224 ~~~p~-~~~----------~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~--~~~~~~i~~~l~~~F~~~v~~~~~~vP 290 (369)
.+... ..+ ..|+. ++++ +.+.++|.-+++=++...... ...++.+.+.+.+. ...+.+....--
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~-~~~~-~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l-GY~v~~~vlna~ 145 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFF-EFLR-IVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL-GYNVQWRVLNAA 145 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHH-HHHH-HHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT-TEEEEEEEEEGG
T ss_pred cCCceEeccccccccccccchhhH-HHHH-HHhhccceEEEecccceeecccccccccccccccccc-ceeehhccccHh
Confidence 44321 111 11322 3444 445688987777554433222 23466666666553 222333333322
Q ss_pred eccC---CcEEEEEeecCC
Q 017607 291 TYPS---GIIGFLICSTEG 306 (369)
Q Consensus 291 ~~p~---g~w~f~~ask~~ 306 (369)
.|.. -.-.|++|.+..
T Consensus 146 ~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 146 DYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp GGTSSBE-EEEEEEEEEGG
T ss_pred hCCCCCceeeEEEEEECCC
Confidence 2311 135788888763
No 331
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=90.90 E-value=2.7 Score=42.18 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=62.3
Q ss_pred CCCEEEEEe--CcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE----cchHHHHhhC-
Q 017607 142 SPKTVLVVG--GGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI----GDAVEFLRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG--~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~----~Da~~~l~~~- 212 (369)
...+||++| ++-|..+..+++.. +..+|+++|.+++-++.+++.++.... .......++. .|..+.+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence 346899997 45677777788874 235799999999999999886432100 0000111221 2344444332
Q ss_pred CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 213 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 213 ~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
....+|+|+..... ...+....+.|+++|.+++
T Consensus 254 ~g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 254 GGQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEE
Confidence 23469988853311 2357788899998886654
No 332
>PLN02827 Alcohol dehydrogenase-like
Probab=90.87 E-value=1.7 Score=43.14 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=60.0
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE--cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~Da~~~l~~~~~~~f 217 (369)
...++||+.|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+.... .|..+.+++...+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV------TDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEcccccchHHHHHHHHHhCCCC
Confidence 4567999998643 33445567776666799999999888888663 21 10111111 233344443323369
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~~ 257 (369)
|+|+- .. +. ...+..+.+.|+++ |.+++..
T Consensus 265 d~vid-~~---G~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFE-CV---GD------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEE-CC---CC------hHHHHHHHHhhccCCCEEEEEC
Confidence 98873 32 21 23467788889998 9998643
No 333
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.85 E-value=2.2 Score=41.00 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCCCEEEEEe--CcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG--~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~f 217 (369)
....+||+.| +|-|..+..+++..+ .+|++++-+++-.+.+++. .. +.-+.... .+..+.++....+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEEeccccccHHHHHHHhCCCCe
Confidence 4567999998 457777777888765 4788899888888887653 21 11111111 123333333333469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+ |.. +. +.+..+.++|+++|.++...
T Consensus 209 dvv~-d~~---G~-------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNV---GG-------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECC---CH-------HHHHHHHHHhCcCcEEEEec
Confidence 9887 332 21 24578889999999998653
No 334
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.71 E-value=0.69 Score=40.71 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=54.8
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-CCCC--CCCEEE--------EEcchHHHH
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-VGFE--DPRVRL--------HIGDAVEFL 209 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~~~--~~rv~v--------~~~Da~~~l 209 (369)
.|.+|+++|.|. |.-+.++++..+ .+++..|..++..+..+......- .... ..+-.+ ....-..|.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 578999999884 445555666554 589999999988877666543210 0000 000000 001111111
Q ss_pred hhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 210 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
+.. ..+|+||....-+....+.|++++.++ .|+|+-+++
T Consensus 98 ~~i--~~~d~vI~~~~~~~~~~P~lvt~~~~~----~m~~gsvIv 136 (168)
T PF01262_consen 98 EFI--APADIVIGNGLYWGKRAPRLVTEEMVK----SMKPGSVIV 136 (168)
T ss_dssp HHH--HH-SEEEEHHHBTTSS---SBEHHHHH----TSSTTEEEE
T ss_pred HHH--hhCcEEeeecccCCCCCCEEEEhHHhh----ccCCCceEE
Confidence 111 358999976554455566788876544 566766665
No 335
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.68 E-value=2.3 Score=38.87 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=53.0
Q ss_pred CCCEEEEEeCcccHHH--HHHHhcCCCcEEEEEECC--HHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVL--REISRHDSVELIDICEID--KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~--~~l~k~~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~f 217 (369)
..++||+||+|.=+.. +.+++.. .+|++|+.+ ++..++++ ..+++++.++.... .. ..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--dl--~~~ 70 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--IL--EGA 70 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH--Hh--CCc
Confidence 5679999999965443 3344543 678888554 44443322 23788887775422 12 359
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
|+||....++ +.-+.+....+..|+++..++.
T Consensus 71 ~lVi~at~d~----------~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 71 FLVIAATDDE----------ELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred EEEEECCCCH----------HHHHHHHHHHHHcCCEEEECCC
Confidence 9988654332 1223444444566898865544
No 336
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.66 E-value=1.9 Score=42.18 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=56.8
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEEC---CHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCc
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEI---DKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEi---d~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~f 217 (369)
...+||++|+|. |.++..+++..+. +|++++. ++.-.+.+++.-.. .+.....|..+ .+. .+.+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~--------~v~~~~~~~~~-~~~--~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGAT--------YVNSSKTPVAE-VKL--VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCE--------EecCCccchhh-hhh--cCCC
Confidence 467999998753 4455667777654 7998886 67777777763111 01111112111 111 2469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+||- .. +. ...+..+.+.|+++|.++...
T Consensus 240 d~vid-~~---g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIE-AT---GV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEE-Cc---CC------HHHHHHHHHHccCCcEEEEEe
Confidence 98873 22 11 235778889999999988643
No 337
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.57 E-value=1.9 Score=42.08 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE---cchHHHHhhC-CCC
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQV-PRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~Da~~~l~~~-~~~ 215 (369)
....+||++|+|. |..+..+++..+. +|++++.+++-++.+++. .. +.-+.... .|..+.+.+. ...
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence 3467999999864 5555667777654 799999999998888763 21 11111111 1333333322 123
Q ss_pred CccE---EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 216 KYDA---IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 216 ~fDv---Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+|. +++|... . ...++.+.+.|+++|.++...
T Consensus 237 g~d~~~d~v~d~~g---~------~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIFECSG---S------KPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEEECCC---C------hHHHHHHHHHHhcCCeEEEEC
Confidence 4651 3334432 1 235667788999999998654
No 338
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.55 E-value=2.1 Score=40.94 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCCCEEEEEe--CcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVG--GGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG--~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
....+||+.| +|-|..+..+++..+ .+|+++.-+++-.+.+++ +.. +.-+.....|..+.+.....+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~-~Ga------~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKE-LGF------DAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHH-cCC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence 3567999998 466777777888765 478999988888888877 321 111111123444434333335699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|+ |.. +. ..++.+.+.|+++|.++..
T Consensus 214 ~vl-d~~---g~-------~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNV---GG-------EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECC---CH-------HHHHHHHHhhccCCEEEEE
Confidence 887 332 11 3467888999999999864
No 339
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.36 E-value=3.1 Score=42.23 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred CEEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh----------
Q 017607 144 KTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ---------- 211 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~---------- 211 (369)
.+|.+||.|--+.... +++.. -+|+++|+|++.++..++-. +.+...+..+.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~-----------~~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGE-----------IHIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCC-----------CCcCCCCHHHHHHHHhhcCceeee
Confidence 5799999995544443 44543 57999999999988643211 11111111111110
Q ss_pred CCCCCccEEEEcCCCCCCC---ccccccHHHHHHHHHhccCCceEEecccccc
Q 017607 212 VPRGKYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~---~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
...+.-|+||+..+.|... +.--.-.+..+.+.+.|++|-+++..+..+.
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 0012579999877766421 1111223456778888998888877665443
No 340
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.30 E-value=2.3 Score=40.62 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=60.8
Q ss_pred CEEEEEeCcccHHH--HHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc------CCCCC--------CCEEEEEcchHH
Q 017607 144 KTVLVVGGGDGGVL--REISRHDSVELIDICEIDKMVIDVSKKYFPELA------VGFED--------PRVRLHIGDAVE 207 (369)
Q Consensus 144 ~~VLdIG~G~G~~~--~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~------~~~~~--------~rv~v~~~Da~~ 207 (369)
++|.+||+|.-+.+ ..+++. ..+|+++|++++.++.+++.+.... ..+.. .++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 57999999854443 334444 2579999999999888776532110 00110 23332 244333
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.+ ..-|+||...+... -...++++.+...++++-+++.++.+
T Consensus 81 a~-----~~aDlVieavpe~~-----~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 81 AV-----KDADLVIEAVPEDP-----EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred Hh-----cCCCEEEEeccCCH-----HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 22 34799997554221 12456788888888888777665433
No 341
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.21 E-value=1.3 Score=39.52 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=59.2
Q ss_pred EEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhchhh-c-----CCCC-------CCCEEEEEcchHHHH
Q 017607 145 TVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPEL-A-----VGFE-------DPRVRLHIGDAVEFL 209 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-~-----~~~~-------~~rv~v~~~Da~~~l 209 (369)
+|.+||+|.=+.... ++.+ ..+|+.+|.+++.++.+++++... . ..+. -.++++ ..|..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 588999986544433 3444 468999999999999888876541 1 0111 123442 233222
Q ss_pred hhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 210 RQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 210 ~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
. ...|+||=..+. ..-..+++|+++.+.+.|+-+|+.++.+
T Consensus 76 --~--~~adlViEai~E-----~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 76 --A--VDADLVIEAIPE-----DLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp --G--CTESEEEE-S-S-----SHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred --H--hhhheehhhccc-----cHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 2 258888843322 1123578999999999999999988654
No 342
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.17 E-value=2.3 Score=41.70 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCCCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc-chHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG-DAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~-Da~~~l~~~~~~~f 217 (369)
....+||+.|+ |-|..+..+++..+ .+|++++.+++-.+.+++.+.. +.-+..... |..+.+.....+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 35679999986 46777777888865 4788999998888877643321 111111111 34444433323469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+ |.. +. ..+..+.+.|+++|.+++..
T Consensus 230 D~v~-d~v---G~-------~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNV---GG-------DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECC---CH-------HHHHHHHHHhccCCEEEEEC
Confidence 9887 332 11 24678889999999998643
No 343
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.11 E-value=1.7 Score=41.87 Aligned_cols=87 Identities=28% Similarity=0.391 Sum_probs=55.9
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..++||++|+| -|.++..+++..+...|.++|.+++-++.++++.. + ++ .+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-----i-~~---------~~~----~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-----L-DP---------EKD----PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-----c-Ch---------hhc----cCCCCCEE
Confidence 45689999854 45566667887766678889998887776654310 0 10 000 12469987
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
| |.. +. ...++.+.+.|+++|.+++..
T Consensus 205 i-d~~---G~------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DAS---GD------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECC---CC------HHHHHHHHHhhhcCcEEEEEe
Confidence 7 332 21 235678889999999998643
No 344
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.04 E-value=5.9 Score=41.18 Aligned_cols=159 Identities=10% Similarity=0.059 Sum_probs=86.3
Q ss_pred CEEEEEeCcccHHHHHHHhcC----CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 144 KTVLVVGGGDGGVLREISRHD----SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~----~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
..|.+.-||+|+.+.+..++. ....+++-|+.+.+...++.++-.... ..+...+..+|...-.......+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 589999999999998765421 235689999999999999987533211 11223333444322100112346999
Q ss_pred EEEcCCCCC----C--Cc---------------cccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHC
Q 017607 220 IIVDSSDPV----G--PA---------------QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETF 278 (369)
Q Consensus 220 Ii~D~~~p~----~--~~---------------~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F 278 (369)
|+.+.+... + ++ ..--...|+..+..+|++||...+......... ...+..-.=.-.|
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~gvl~~-~~~e~~ir~~lL~ 375 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPGILYR-EGKEQTIRKYLVD 375 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCCcccC-CCchHHHHHHHHH
Confidence 997764321 0 00 001135688899999999997543322211111 1111111111234
Q ss_pred CCCeeEEEEEEee---ccCCcEEEEEeecCC
Q 017607 279 KGSVHYAWASVPT---YPSGIIGFLICSTEG 306 (369)
Q Consensus 279 ~~~v~~~~~~vP~---~p~g~w~f~~ask~~ 306 (369)
..++. ..+.+|. ++.|.-.|++++++.
T Consensus 376 ~~~~~-avi~Lp~~~f~~t~i~~~I~~~~k~ 405 (501)
T TIGR00497 376 QNFVD-AVIQLPSNLFSTTSIATSILVLKKN 405 (501)
T ss_pred cCcEE-EEEeCCccccCCCCCCEEEEEEeCC
Confidence 43332 2333443 344666788888763
No 345
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.74 E-value=1.1 Score=42.88 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=60.6
Q ss_pred CEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-----CC-CCC-------CCEEEEEcchHHH
Q 017607 144 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDAVEF 208 (369)
Q Consensus 144 ~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~Da~~~ 208 (369)
++|.+||+|. +.++..+++.. .+|+++|++++.++.++++..... .+ ... .++++ ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 4799999984 33444455543 479999999999998776432210 00 000 12222 2332222
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+ ..-|+||...++... ....+++.+.+.++++.++++++.+
T Consensus 79 ~-----~~aD~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 V-----ADADLVIEAVPEKLE-----LKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred h-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 347999965543211 1346788888889998887665543
No 346
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.61 E-value=2.4 Score=40.90 Aligned_cols=97 Identities=21% Similarity=0.400 Sum_probs=59.0
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
...+||+.|+|. |..+..+++..+..+|++++.++...+.+++. .. +.-+.....+..... . ..+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~------~~vi~~~~~~~~~~~-~-~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA------DETVNLARDPLAAYA-A-DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------CEEEcCCchhhhhhh-c-cCCCccEE
Confidence 567899988765 55666777776555799999998888877664 21 100111111111221 1 12359988
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+--.. . ...++.+.+.|+++|.++...
T Consensus 236 ld~~g----~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASG----A------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCC----C------HHHHHHHHHHHhcCCEEEEEe
Confidence 74221 1 235778899999999998643
No 347
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=1.1 Score=42.80 Aligned_cols=102 Identities=17% Similarity=0.287 Sum_probs=61.6
Q ss_pred CEEEEEeCc--ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-----cCC-CCC-------CCEEEEEcchHHH
Q 017607 144 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-----AVG-FED-------PRVRLHIGDAVEF 208 (369)
Q Consensus 144 ~~VLdIG~G--~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-----~~~-~~~-------~rv~v~~~Da~~~ 208 (369)
++|.+||+| .+.++..++++. .+|+++|++++.++.+++.+... ..+ .+. .++++ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~- 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD- 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-
Confidence 479999998 455666666664 47999999999997655332111 001 000 13332 233211
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+ +..|+||...+.. .....++++.+.+.++|+.+++..+.+
T Consensus 80 ~-----~~aDlVi~av~e~-----~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L-----KDADLVIEAATEN-----MDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred h-----ccCCeeeeccccc-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 3579998644321 112357899999999999888766544
No 348
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=89.51 E-value=3.2 Score=41.01 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEE--EcchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH--IGDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~--~~Da~~~l~~~~~~~f 217 (369)
....+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+... ..+..+.+.+...+.+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCC
Confidence 3467999998653 44556677776655899999999998888764 21 1111111 1122233332222369
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~~ 257 (369)
|+|+- .. +. ...+..+.+.|+++ |.++...
T Consensus 257 d~vid-~~---G~------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFE-CI---GN------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEE-CC---CC------HHHHHHHHHHhhcCCCeEEEEe
Confidence 98873 32 11 23467778899886 9887543
No 349
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.39 E-value=2.3 Score=41.06 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=53.7
Q ss_pred CEEEEEeCccc--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 144 KTVLVVGGGDG--GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 144 ~~VLdIG~G~G--~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+|.+||+|.- .++..+.+.....+|+++|.+++..+.+++. . .... ...+..+.+ ...|+||
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g--------~~~~-~~~~~~~~~-----~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-G--------LGDR-VTTSAAEAV-----KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-C--------CCce-ecCCHHHHh-----cCCCEEE
Confidence 58999998853 3344444443234799999999887776542 1 0011 122322222 3589999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+-.+. .. ..++++.+...++++.+++.
T Consensus 72 iavp~--~~-----~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPV--GA-----SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCH--HH-----HHHHHHHHHhhCCCCCEEEe
Confidence 75532 11 24567777778888876653
No 350
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.35 E-value=3.5 Score=39.87 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCCCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~f 217 (369)
...++||+.|+ |-|..+..+++..+. +|+++..+++-.+.+++.+.. +.-+.... .|..+.+.....+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHhCCCCc
Confidence 45679999984 567777778887654 788888888888887764331 11111111 133333433323569
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+ |.. +. ..+..+.+.|+++|.++...
T Consensus 223 d~v~-d~~---g~-------~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 223 DIYF-DNV---GG-------KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEEE-ECC---CH-------HHHHHHHHHhccCcEEEEec
Confidence 9887 332 11 34678889999999998643
No 351
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=89.30 E-value=3.4 Score=40.74 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=59.6
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc--chHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG--DAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~--Da~~~l~~~~~~~f 217 (369)
+...+||++|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 456799999854 233445567776555799999999988888653 21 111111111 23344433323469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEec
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNM 256 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~ 256 (369)
|+|+- .. +. ...+..+.+.|+++ |.++..
T Consensus 258 d~vid-~~---g~------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 258 DYTFE-CI---GN------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred cEEEE-CC---CC------hHHHHHHHHhhccCCCeEEEE
Confidence 98873 22 11 23577788899987 988764
No 352
>PRK08223 hypothetical protein; Validated
Probab=89.18 E-value=1.2 Score=42.88 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=24.0
Q ss_pred CCEEEEEeCcc-cHH-HHHHHhcCCCcEEEEEECCHH
Q 017607 143 PKTVLVVGGGD-GGV-LREISRHDSVELIDICEIDKM 177 (369)
Q Consensus 143 p~~VLdIG~G~-G~~-~~~l~k~~~~~~V~~VEid~~ 177 (369)
..+||++|||. |+. +..|++. ++.+++.+|-|.-
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCCc
Confidence 56899999984 444 3444444 5889999998743
No 353
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=89.16 E-value=2.9 Score=41.14 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=60.1
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
...++||+.|+|. |..+..+++..+...+++++.++.-.+.+++. .. +.-+.....+..+.+.......+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~------~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GA------THVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------cEEecCCCcCHHHHHHHHhCCCCcE
Confidence 3467899997543 44555667776666799999999888877653 11 0001111112223333222356998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+--. +. ...+..+.+.|+++|.++...
T Consensus 258 vld~~----g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTT----GV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECC----CC------cHHHHHHHHHhccCCEEEEeC
Confidence 87322 11 135778889999999998644
No 354
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.92 E-value=5.8 Score=38.72 Aligned_cols=109 Identities=17% Similarity=0.302 Sum_probs=60.0
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
+.+.+|.+||+|. |......+...+ ..++..+|++++.++--..-+.... .+. .++.+..+|-.+ . ...|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~----~--~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD----C--KDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH----h--CCCC
Confidence 4567999999976 544444443333 3479999998776543322222221 122 346666565333 2 3589
Q ss_pred EEEEcCCCCCCCc---cccc--cHHHHHHHHHhc---cCCceEEecc
Q 017607 219 AIIVDSSDPVGPA---QELV--EKPFFDTIAKAL---RPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~---~~L~--~~ef~~~~~~~L---kpgGilv~~~ 257 (369)
+||+....|..+. ..++ ....++.+...+ .|+|++++.+
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 9998665554432 1111 233445544433 3788887654
No 355
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=88.86 E-value=0.88 Score=41.42 Aligned_cols=113 Identities=18% Similarity=0.073 Sum_probs=61.3
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhcC-CCcEEEEEECCHHHHHHHHhhchhhcCCC---CCCCEEEEEcchHHHHhhCCCC
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRHD-SVELIDICEIDKMVIDVSKKYFPELAVGF---EDPRVRLHIGDAVEFLRQVPRG 215 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~~-~~~~V~~VEid~~vi~~ar~~~~~~~~~~---~~~rv~v~~~Da~~~l~~~~~~ 215 (369)
......|.|+=.|+|..++-++..- +...|..+--+ ++...+..+-+...... ...+++.+-.+...+. ..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~-e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA-ELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecch-hhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CCC
Confidence 3456799999999999999998763 33355554332 22222211111110000 0123444444443332 235
Q ss_pred CccEEEEcCCCCCCC---ccccccHHHHHHHHHhccCCceEEec
Q 017607 216 KYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~---~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..|+++....+..-. ...-+-..+++.+.+.|||||++++.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 677776544332211 00122356899999999999999864
No 356
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=88.79 E-value=4 Score=40.12 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=59.0
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEc--chHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIG--DAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~--Da~~~l~~~~~~~f 217 (369)
....+||+.|+| -|..+..+++..+...|++++.+++-.+.+++. .. +.-+..... |..+.+.+...+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCC
Confidence 346799998753 233334466776666788999888888887653 21 111111222 33333333223569
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhcc-CCceEEec
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALR-PGGVLCNM 256 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lk-pgGilv~~ 256 (369)
|+|+ |.. +. ...+..+.+.|+ ++|.++..
T Consensus 255 d~vi-d~~---g~------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVI---GS------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECC---CC------HHHHHHHHHHhccCCCEEEEE
Confidence 9888 332 11 235777888999 99998864
No 357
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.76 E-value=17 Score=36.93 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=51.2
Q ss_pred CCCEEEEEeCcccHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~-l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..++|+++|+|.=+.... .++.. ..+|+++|.|+.-...++.. + .++. +..+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~------G-----~~v~--~leeal-----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD------G-----FRVM--TMEEAA-----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc------C-----CEeC--CHHHHH-----hcCCEE
Confidence 577999999986443333 44544 35899999999654443321 1 1111 222222 247988
Q ss_pred EEcCCCCCCCccccccHHHHH-HHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFD-TIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~-~~~~~LkpgGilv~~~ 257 (369)
|.-. + +...+. .....+++|+++++-+
T Consensus 255 ItaT----G------~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITAT----G------NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECC----C------CHHHHHHHHHhcCCCCcEEEEEC
Confidence 7522 1 123444 3677899999988654
No 358
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.70 E-value=1.5 Score=43.49 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~ 176 (369)
..+||++|||. |+.....+-..++.+++.+|-|.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46899999984 33333333344688999999885
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.64 E-value=2.7 Score=41.20 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=62.3
Q ss_pred CCEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchh----hc-CCC----CCCCEEEEEcchHHHHhh
Q 017607 143 PKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE----LA-VGF----EDPRVRLHIGDAVEFLRQ 211 (369)
Q Consensus 143 p~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~----~~-~~~----~~~rv~v~~~Da~~~l~~ 211 (369)
.++|-+||+|. .+++..++.+ ..+|++.|++++.++.+++.+.. .. .+. ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 47899999993 4444555555 36899999999988766554321 10 000 01233433 2322222
Q ss_pred CCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 212 VPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 212 ~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
..-|+|+-..+... -...++|+.+-+.++|+-++..++.
T Consensus 82 ---~~aDlViEavpE~l-----~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPERE-----ALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCH-----HHHHHHHHHHHHhCCCCeEEEECCC
Confidence 34788886443321 1256788999999999887776654
No 360
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.62 E-value=2.1 Score=41.02 Aligned_cols=103 Identities=18% Similarity=0.235 Sum_probs=60.7
Q ss_pred CCEEEEEeCcccHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-----c-CCCCC-------CCEEEEEcchHH
Q 017607 143 PKTVLVVGGGDGGV--LREISRHDSVELIDICEIDKMVIDVSKKYFPEL-----A-VGFED-------PRVRLHIGDAVE 207 (369)
Q Consensus 143 p~~VLdIG~G~G~~--~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-----~-~~~~~-------~rv~v~~~Da~~ 207 (369)
-++|.+||+|.-+. +..+++.. .+|+++|.+++.++.+.+.+... . ..+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAG--YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 35799999995444 34445443 58999999999988765432211 0 00110 123332 332 2
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
-+ ...|+||.-.+... -....+++.+...++++.+++.++.+
T Consensus 80 ~~-----~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 DL-----ADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred Hh-----cCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 22 25799996544321 12346788899999999888765543
No 361
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.61 E-value=3.7 Score=39.89 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=59.4
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fD 218 (369)
...++||+.|+| .|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+.+. ..+.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 346789999753 233334456665555899999999988888663 21 111122223333333332 223599
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+-... . ...++.+.+.|+++|.++...
T Consensus 244 ~vid~~g----~------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAG----V------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCC----C------HHHHHHHHHhccCCCEEEEEc
Confidence 8883221 1 135678889999999988654
No 362
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=88.53 E-value=1.5 Score=41.16 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=50.4
Q ss_pred CCEEEEEeC-cccHHHHHHHhcCCCcEEEEEECCHHHHH-------------------HHHhhchhhcCCCCCCCEEEEE
Q 017607 143 PKTVLVVGG-GDGGVLREISRHDSVELIDICEIDKMVID-------------------VSKKYFPELAVGFEDPRVRLHI 202 (369)
Q Consensus 143 p~~VLdIG~-G~G~~~~~l~k~~~~~~V~~VEid~~vi~-------------------~ar~~~~~~~~~~~~~rv~v~~ 202 (369)
..+|+++|. |-|+++.+.+...++.+++.+|.|.-.+. +.+++.... +|+.++..
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~I-----nP~c~V~~ 104 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQI-----NPECEVTA 104 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhh-----CCCceEee
Confidence 458999995 56888888777767899999999865543 233333332 56776655
Q ss_pred cchH---HHHhhCCCCCccEEEEcCCCCC
Q 017607 203 GDAV---EFLRQVPRGKYDAIIVDSSDPV 228 (369)
Q Consensus 203 ~Da~---~~l~~~~~~~fDvIi~D~~~p~ 228 (369)
-|.+ +.+.+.-...||.|| |+.|..
T Consensus 105 ~~~f~t~en~~~~~~~~~DyvI-DaiD~v 132 (263)
T COG1179 105 INDFITEENLEDLLSKGFDYVI-DAIDSV 132 (263)
T ss_pred hHhhhCHhHHHHHhcCCCCEEE-Echhhh
Confidence 4432 222232235799887 555533
No 363
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.38 E-value=6.2 Score=38.99 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=66.2
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
+...+|.++|+|. |..+..-++.....+|++||++++-+++|+++=.... ++..... |..+.+++..+.-.|.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~--vn~~~~~----~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF--VNPKEVD----DVVEAIVELTDGGADY 257 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee--ecchhhh----hHHHHHHHhcCCCCCE
Confidence 3456899999875 4445555666677899999999999999998632110 1111111 6667776655546777
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.| |.. + ..+.++....++.++|..++-
T Consensus 258 ~~-e~~---G------~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 258 AF-ECV---G------NVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred EE-Ecc---C------CHHHHHHHHHHHhcCCeEEEE
Confidence 75 221 2 234688888899999987764
No 364
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.33 E-value=2.9 Score=39.46 Aligned_cols=105 Identities=21% Similarity=0.186 Sum_probs=57.4
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCC--CCEEEEE---cchHHHHhhCCCCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED--PRVRLHI---GDAVEFLRQVPRGK 216 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~--~rv~v~~---~Da~~~l~~~~~~~ 216 (369)
++.+||++|+|+|..+..++.+. ..+|+.-|+-..+.. .+.+....+...+. ..+.+.. +++.... ...+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~-~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVS-FRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHh-hccCCc
Confidence 56789999999998888888865 467888887544443 33332222111111 1233222 2222221 111222
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceE
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVL 253 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGil 253 (369)
+|+|+. +|.++.+. .+ ......++..|..+|++
T Consensus 163 ~Dlila--sDvvy~~~-~~-e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 163 FDLILA--SDVVYEEE-SF-EGLVKTLAFLLAKDGTI 195 (248)
T ss_pred ccEEEE--eeeeecCC-cc-hhHHHHHHHHHhcCCeE
Confidence 999993 44443321 11 23567788888888843
No 365
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.28 E-value=5.1 Score=32.19 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+.++||+||+|.-+..+.-.-.....+|+++..+. +.++ .++++...+.... . ..+|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~---l--~~~~lV~ 65 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED---L--DGADLVF 65 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG---C--TTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH---H--hhheEEE
Confidence 57899999998766655433233347999988876 2222 2455555443222 2 3599999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEeccccc
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 260 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~ 260 (369)
....+ .+.-+.+++..+.-|+++..++.|
T Consensus 66 ~at~d----------~~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 66 AATDD----------PELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp E-SS-----------HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred ecCCC----------HHHHHHHHHHHhhCCEEEEECCCc
Confidence 65433 233445555566688998776654
No 366
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.15 E-value=3.6 Score=39.39 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=57.9
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH--hhCCCCCc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l--~~~~~~~f 217 (369)
....+||++|+|. |..+..+++..+...|++++-+++..+.++++-. + .++..+-..+. +....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------T---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------e---EEecCCCCCHHHHHHhcCCCC
Confidence 3457999997642 5555667777655458899999988887765321 0 11111111110 12223579
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
|+|+.... ....+..+.+.|+++|.++..
T Consensus 228 d~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 99883221 124677888999999999864
No 367
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=88.10 E-value=4.1 Score=40.04 Aligned_cols=100 Identities=18% Similarity=0.179 Sum_probs=58.8
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE--cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~Da~~~l~~~~~~~f 217 (369)
....+||+.|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+++...+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 356789999754 233334567776655899999999998888663 21 11111111 112233333223469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~~ 257 (369)
|+++ |.. +. ...+..+.+.++++ |.++...
T Consensus 259 d~vi-d~~---G~------~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSF-ECT---GN------IDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEE-ECC---CC------hHHHHHHHHHhhcCCCEEEEEC
Confidence 9777 332 11 23567788899996 9888643
No 368
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.04 E-value=2.2 Score=40.82 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=25.4
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCH
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDK 176 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~ 176 (369)
...+||++|+| -|+.+.+.+-..++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35689999988 455555554445678999999883
No 369
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.96 E-value=3.3 Score=39.93 Aligned_cols=101 Identities=10% Similarity=0.233 Sum_probs=56.7
Q ss_pred CEEEEEeCccc--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCC--------CCEEEEEcchHHHHhhCC
Q 017607 144 KTVLVVGGGDG--GVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED--------PRVRLHIGDAVEFLRQVP 213 (369)
Q Consensus 144 ~~VLdIG~G~G--~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~--------~rv~v~~~Da~~~l~~~~ 213 (369)
++|.+||+|.- .++..+++.. .+|+++|.+++.++.+++.+......... .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 58999999943 3444455543 47999999999988877643211000000 11222 23332222
Q ss_pred CCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 214 RGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+..|+||.-.+.... ...++++.+...++++-+++..+
T Consensus 78 -~~aDlVi~av~~~~~-----~~~~v~~~l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 -SGADLVIEAVPEKLE-----LKRDVFARLDGLCDPDTIFATNT 115 (311)
T ss_pred -ccCCEEEEeccCcHH-----HHHHHHHHHHHhCCCCcEEEECC
Confidence 347999965432211 13457777777777766665544
No 370
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.95 E-value=2.8 Score=40.21 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=59.9
Q ss_pred CCEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchh----hc-CC-CCC-------CCEEEEEcchHH
Q 017607 143 PKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE----LA-VG-FED-------PRVRLHIGDAVE 207 (369)
Q Consensus 143 p~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~----~~-~~-~~~-------~rv~v~~~Da~~ 207 (369)
-++|.+||+|. ..++..+++.. .+|+++|.+++.++.+++.+.. .. .+ +.. .++. ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 36799999993 44555555553 5899999999998866554321 10 00 000 1122 22332 2
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
-+ ..-|+||...++... ....+++.+...++++.+++.++.+
T Consensus 80 ~~-----~~aD~Vieav~e~~~-----~k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 80 EL-----RDADFIIEAIVESED-----LKKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred Hh-----CCCCEEEEcCccCHH-----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 22 247999965543221 1346788888889998888755543
No 371
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.94 E-value=1.6 Score=38.75 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=22.1
Q ss_pred EEEEEeCcc-cHH-HHHHHhcCCCcEEEEEECCH
Q 017607 145 TVLVVGGGD-GGV-LREISRHDSVELIDICEIDK 176 (369)
Q Consensus 145 ~VLdIG~G~-G~~-~~~l~k~~~~~~V~~VEid~ 176 (369)
+|++||+|. |+. +..+++. ++.+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 589999984 443 3444454 578999999986
No 372
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.78 E-value=0.48 Score=44.54 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCEEEEEeCcccHHHHHHHhcCC--------CcEEEEEECCHHHHHHHHhhchh
Q 017607 143 PKTVLVVGGGDGGVLREISRHDS--------VELIDICEIDKMVIDVSKKYFPE 188 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~--------~~~V~~VEid~~vi~~ar~~~~~ 188 (369)
+-+|+++|+|+|.++..+++... ..+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46999999999999999887421 24899999999999988888765
No 373
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.76 E-value=3.8 Score=40.00 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCCEEEEEeCcccH-HHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGG-VLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~-~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
....+||++|+|.=+ ++..++++ .+..+|+++|.+++-++.+++ +.. . ....+ +. + ...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~~~---~~-~--~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLIDD---IP-E--DLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eehhh---hh-h--ccCCc
Confidence 346799999975433 33455664 445689999999988888765 211 1 11111 11 1 12489
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|| |..... .....++...+.|+++|.+++..
T Consensus 225 ~vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAF-ECVGGR------GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE-ECCCCC------ccHHHHHHHHHhCcCCcEEEEEe
Confidence 887 443211 01246788889999999998644
No 374
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.57 E-value=3.4 Score=38.33 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=47.7
Q ss_pred CEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH--HHHhhCCCCCccE
Q 017607 144 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV--EFLRQVPRGKYDA 219 (369)
Q Consensus 144 ~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~--~~l~~~~~~~fDv 219 (369)
++++++|+|. +.+++.|.+.. ..|+++|.|++.++..... .....++++|+. +.|++..-..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 3689999984 33344444443 5799999999987753221 134788888885 4566654568999
Q ss_pred EEEcCC
Q 017607 220 IIVDSS 225 (369)
Q Consensus 220 Ii~D~~ 225 (369)
++....
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 997543
No 375
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.52 E-value=17 Score=32.12 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=66.3
Q ss_pred CCCEEEEEeCcccHHHHHHHh-cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH---HHHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISR-HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV---EFLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k-~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~---~~l~~~~~~~f 217 (369)
+..+|+.|||=+-... +.+ ..+..++...|+|...-....+ +++.=|.. ++.+.. .++|
T Consensus 25 ~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~~~~--------------~F~fyD~~~p~~~~~~l-~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQFGGD--------------EFVFYDYNEPEELPEEL-KGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhcCCc--------------ceEECCCCChhhhhhhc-CCCc
Confidence 4579999998864443 333 3456789999999877543222 12222221 222223 3689
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeeccCC
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYPSG 295 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p~g 295 (369)
|+||+|.+- ......+ .+.+.++..+++++.++.-++ .. +...+.+.++ +.. ..+.|.++.|
T Consensus 88 d~vv~DPPF---l~~ec~~-k~a~ti~~L~k~~~kii~~Tg------~~---~~~~~~~ll~--~~~-~~f~p~h~~~ 149 (162)
T PF10237_consen 88 DVVVIDPPF---LSEECLT-KTAETIRLLLKPGGKIILCTG------EE---MEELIKKLLG--LRM-CDFQPEHPNN 149 (162)
T ss_pred eEEEECCCC---CCHHHHH-HHHHHHHHHhCccceEEEecH------HH---HHHHHHHHhC--eeE-EeEEeccccC
Confidence 999988754 1111111 233566666788787775332 12 2233344443 222 3667888765
No 376
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.36 E-value=1.6 Score=43.06 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=23.0
Q ss_pred CCEEEEEeCcc-cHH-HHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGD-GGV-LREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~-G~~-~~~l~k~~~~~~V~~VEid~ 176 (369)
..+||+||+|. |+. +..|++. ++.+++.||-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999984 333 3334444 578999999985
No 377
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.26 E-value=6 Score=38.91 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE--cchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI--GDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~--~Da~~~l~~~~~~~f 217 (369)
....+||++|+| -|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+.....+.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 456799999764 233345567776666899999999988888653 21 11111111 112333333223469
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~~ 257 (369)
|+|+- .. +. ...+..+.+.|+++ |.++...
T Consensus 256 d~vid-~~---g~------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFE-CT---GN------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEE-CC---CC------hHHHHHHHHhcccCCCEEEEEc
Confidence 98873 22 11 13567788899885 9887643
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.18 E-value=6.3 Score=38.23 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+||+.|+| .|..+..+++..+ .+|++++.+++-.+.+++.=. + .++..+ + ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga-------~---~vi~~~--~----~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGA-------A---SAGGAY--D----TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCC-------c---eecccc--c----cCcccceE
Confidence 346799999954 4445566777765 479999999998888877411 1 011000 0 11235887
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++.... . ...+....+.|+++|.+++..
T Consensus 227 ~i~~~~--~--------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAP--A--------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCC--c--------HHHHHHHHHhhCCCcEEEEEe
Confidence 664221 1 135778889999999998643
No 379
>PRK13699 putative methylase; Provisional
Probab=87.18 E-value=1.3 Score=41.14 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=40.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~ 189 (369)
.....|||-=+|+|+++....+.. .+..++||+++..+.+++.+...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence 456789999999999999888774 57899999999999999887543
No 380
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=87.06 E-value=15 Score=31.07 Aligned_cols=74 Identities=23% Similarity=0.229 Sum_probs=41.9
Q ss_pred CCCCEEEEEeCcccHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCc
Q 017607 141 PSPKTVLVVGGGDGGVLREISRH---DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~---~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~f 217 (369)
.++++|+++|+| .++..+++. .+..+|++++.+++-.+...+.+... .+.....|..+. -+..
T Consensus 17 ~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~ 82 (155)
T cd01065 17 LKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL-----LAEA 82 (155)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc-----cccC
Confidence 346799999986 444444432 22468999999987665544433210 011222332222 1469
Q ss_pred cEEEEcCCCCC
Q 017607 218 DAIIVDSSDPV 228 (369)
Q Consensus 218 DvIi~D~~~p~ 228 (369)
|+||+..+...
T Consensus 83 Dvvi~~~~~~~ 93 (155)
T cd01065 83 DLIINTTPVGM 93 (155)
T ss_pred CEEEeCcCCCC
Confidence 99998665544
No 381
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.05 E-value=4.7 Score=38.59 Aligned_cols=100 Identities=18% Similarity=0.371 Sum_probs=58.2
Q ss_pred CEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchh-------h-cCC-CCC-------CCEEEEEcch
Q 017607 144 KTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPE-------L-AVG-FED-------PRVRLHIGDA 205 (369)
Q Consensus 144 ~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~-------~-~~~-~~~-------~rv~v~~~Da 205 (369)
++|.+||+|. +.++..++++. .+|+++|.+++.++.+++.+.. . ..+ ... .++... .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 5899999994 33444455553 4799999999999876553321 0 000 000 122221 222
Q ss_pred HHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 206 VEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 206 ~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+-+ ...|+||.-.+.... ...++++.+.+.++++.+++.++
T Consensus 81 -~~~-----~~aDlVieav~e~~~-----~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL-----SDADFIVEAVPEKLD-----LKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -HHh-----CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEEcC
Confidence 211 247988865432211 13568888888888888877554
No 382
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.02 E-value=10 Score=36.95 Aligned_cols=106 Identities=14% Similarity=0.284 Sum_probs=57.2
Q ss_pred EEEEEeCcc-cHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCC-CCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 145 TVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFED-PRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 145 ~VLdIG~G~-G~~~~~-l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~-~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+|-+||+|. |..... ++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+ . ..-|+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~----~--~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDD----C--ADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHH----h--CCCCEEE
Confidence 478899976 554433 344444468999999866543222212211 12222 357777777333 2 2489999
Q ss_pred EcCCCCCCCcc-----ccc--cHHHHHHHHHhcc---CCceEEecc
Q 017607 222 VDSSDPVGPAQ-----ELV--EKPFFDTIAKALR---PGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~-----~L~--~~ef~~~~~~~Lk---pgGilv~~~ 257 (369)
+.+-.|..+.. .|+ ..+.++.+...++ |+|++++-+
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 87665544321 121 2334444444443 788877543
No 383
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.02 E-value=2.4 Score=40.72 Aligned_cols=102 Identities=20% Similarity=0.297 Sum_probs=62.4
Q ss_pred CEEEEEeCc--ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-----CC-CCC-------CCEEEEEcchHHH
Q 017607 144 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDAVEF 208 (369)
Q Consensus 144 ~~VLdIG~G--~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~Da~~~ 208 (369)
++|-+||+| .++++..+++.. .+|+.+|.+++.++.+++.+...- .+ +.. .++++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999999 445555566653 589999999999988766533210 00 110 12322 2333 21
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhc-cCCceEEecccc
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKAL-RPGGVLCNMAES 259 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~L-kpgGilv~~~~s 259 (369)
+ ...|+||-..++.. -...++|..+-+.+ +|+.+++.++.+
T Consensus 82 ~-----~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 F-----ADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred h-----CCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 34798885443311 22467888888888 788888876643
No 384
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.94 E-value=1.9 Score=40.32 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=24.6
Q ss_pred CCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGG-DGGVLREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~ 176 (369)
..+||++|+| -|+.+.+.+-..++.+++.+|-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4589999987 455555544445688999999774
No 385
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.92 E-value=1.6 Score=39.63 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCEEEEEeCcc-cHHH-HHHHhcCCCcEEEEEECC
Q 017607 142 SPKTVLVVGGGD-GGVL-REISRHDSVELIDICEID 175 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~-~~l~k~~~~~~V~~VEid 175 (369)
...+||++|+|. |+.. ..|++. ++.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 356899999984 3333 334444 57899999988
No 386
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.84 E-value=7.6 Score=31.34 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=65.6
Q ss_pred EEEEEeCcccHHHHH--HHhcCCCcEEE-EEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 145 TVLVVGGGDGGVLRE--ISRHDSVELID-ICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~--l~k~~~~~~V~-~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
||.+||+|..+.... +.+..+..+++ ++|.+++-.+.+.+.+. +. ...|..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh---hcCCEEE
Confidence 689999987644432 33443444554 68999988776655432 23 67788887764 3699999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccc-hhhhHHHHHHHHHHHH
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMW-LHTHLIEDMISICRET 277 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~-~~~~~~~~i~~~l~~~ 277 (369)
+..++.. =++.+..+|+-|--+++ +-|. ...+..+++.+..++.
T Consensus 68 I~tp~~~----------h~~~~~~~l~~g~~v~~--EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSS----------HAEIAKKALEAGKHVLV--EKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGG----------HHHHHHHHHHTTSEEEE--ESSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcc----------hHHHHHHHHHcCCEEEE--EcCCcCCHHHHHHHHHHHHHh
Confidence 8654311 24456666666665554 3333 3445666776666554
No 387
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.67 E-value=3.8 Score=42.79 Aligned_cols=104 Identities=14% Similarity=0.267 Sum_probs=64.0
Q ss_pred CCCEEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-----cCC-CCC-------CCEEEEEcchH
Q 017607 142 SPKTVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-----AVG-FED-------PRVRLHIGDAV 206 (369)
Q Consensus 142 ~p~~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-----~~~-~~~-------~rv~v~~~Da~ 206 (369)
+-++|-+||+|. ++++..+++.. -.|++.|.+++.++.+++++... ..+ +.. .+++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 457899999994 34555566653 57999999999999876554321 001 100 124433 2322
Q ss_pred HHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 207 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 207 ~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+ . ..-|+||--.++.... ...+|+.+.+.++++.++++++.+
T Consensus 83 ~----~--~~aDlViEav~E~~~v-----K~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 83 D----L--ADCDLVVEAIVERLDV-----KQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred H----h--CCCCEEEEcCcccHHH-----HHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 2 2589999655443222 456778888888888888766543
No 388
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=86.66 E-value=0.71 Score=44.60 Aligned_cols=131 Identities=20% Similarity=0.228 Sum_probs=82.8
Q ss_pred ceeEEEE-cCeEeecccchhHH-----HHHHHhccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHH
Q 017607 108 YGKVLVL-DGIVQLTEKDECAY-----QEMIAHLPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDV 181 (369)
Q Consensus 108 ~G~~l~l-Dg~~q~~~~de~~Y-----~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ 181 (369)
+|++=.. +|..|+-.+--..+ .|+..-.-+. .....|.|+=.|-|..+.-.+-+.+.+.|.++|++|..++.
T Consensus 156 ~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~s--c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa 233 (351)
T KOG1227|consen 156 LGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTS--CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA 233 (351)
T ss_pred ccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcc--cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH
Confidence 4555444 46666654432222 5655544443 34578999999999999844434457899999999999999
Q ss_pred HHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCce-EE
Q 017607 182 SKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGV-LC 254 (369)
Q Consensus 182 ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGi-lv 254 (369)
.|+.+..++. ..+..++.+|-+.. .+....|-|.+.+- |. +++-.-.+.++|+|.|- ++
T Consensus 234 LrR~~~~N~V---~~r~~i~~gd~R~~---~~~~~AdrVnLGLl-PS-------se~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 234 LRRNAEANNV---MDRCRITEGDNRNP---KPRLRADRVNLGLL-PS-------SEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred HHHHHHhcch---HHHHHhhhcccccc---Cccccchheeeccc-cc-------cccchHHHHHHhhhcCCcEE
Confidence 9998765533 34667777775543 12456787776532 11 11234466778888765 44
No 389
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.35 E-value=2.3 Score=39.02 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCCEEEEEeCcc-cHH-HHHHHhcCCCcEEEEEECC
Q 017607 142 SPKTVLVVGGGD-GGV-LREISRHDSVELIDICEID 175 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~-~~~l~k~~~~~~V~~VEid 175 (369)
...+|++||+|. |+. +..|++. ++.+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999884 443 3334444 57899999999
No 390
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.31 E-value=6.8 Score=39.82 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCEEEEEeCcccHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLR-EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~-~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..++|+++|+|.=+... ..++..+ .+|+++|+|+.-.+.|++. . .+.. +..+.+ ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G-a~ViV~d~d~~R~~~A~~~-G----------~~~~--~~~e~v-----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG-ARVIVTEVDPICALQAAME-G----------YEVM--TMEEAV-----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEECChhhHHHHHhc-C----------CEEc--cHHHHH-----cCCCEE
Confidence 46799999999644333 3455554 4899999999888877663 1 1111 112222 247988
Q ss_pred EEcCCCCCCCccccccHHHHHH-HHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDT-IAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~-~~~~LkpgGilv~~~ 257 (369)
|.-. + +...+.. ..+.+++||+++.-+
T Consensus 262 I~at----G------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTT----G------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECC----C------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 8422 1 1234544 478999999998654
No 391
>PRK08328 hypothetical protein; Provisional
Probab=86.25 E-value=2.3 Score=39.59 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~ 176 (369)
..+||++|||. |+.....+-..++.+++.+|-|.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56899999884 44444433344688999998764
No 392
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.90 E-value=13 Score=37.60 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=65.3
Q ss_pred CEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHh---------hC-C
Q 017607 144 KTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLR---------QV-P 213 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---------~~-~ 213 (369)
.+|-+||.|-=++...++-.....+|+++||++..++...+- +..+..-|..+.++ .. .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----------~~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----------ESYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----------cceeecCcHHHHHHHHHhcCCceEecC
Confidence 689999998766666554333346899999999999865431 11222212111111 00 0
Q ss_pred C---CCccEEEEcCCCCCCC---ccccccHHHHHHHHHhccCCceEEecccccc
Q 017607 214 R---GKYDAIIVDSSDPVGP---AQELVEKPFFDTIAKALRPGGVLCNMAESMW 261 (369)
Q Consensus 214 ~---~~fDvIi~D~~~p~~~---~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~ 261 (369)
. ...|++|+..+.|... +.--|-....+.+...|++|-.+++.+..+-
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~P 132 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPP 132 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 1 2689999877776632 2222234566788899999998888766543
No 393
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.78 E-value=7.7 Score=37.37 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+..+||+.|+|. |..+..+++..+...|+++.-+++..+.++++ .. +.-+........++.+......+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3566899997654 55566677776554588888888777766543 11 0011111111122222222345999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+-.. + ....+..+.++|+++|.++...
T Consensus 231 vld~~----g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEAA----G------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEECC----C------CHHHHHHHHHHhhcCCEEEEEc
Confidence 88321 1 1235778899999999988643
No 394
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.78 E-value=5.3 Score=42.79 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=60.0
Q ss_pred CCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCc
Q 017607 143 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKY 217 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~f 217 (369)
..+|+++|+|. .++.+++ .. ..+++++|.|++.++.+++. ..+++.+|+.+ .+++..-++.
T Consensus 400 ~~~vII~G~Gr--~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred cCcEEEEecCh--HHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 35899999884 3333332 22 34799999999999988762 35789999864 4555444679
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
|++++-..++... ...-...+.+.|+-.++..+.
T Consensus 466 ~~vvv~~~d~~~n-------~~i~~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 466 EVLINAIDDPQTS-------LQLVELVKEHFPHLQIIARAR 499 (621)
T ss_pred CEEEEEeCCHHHH-------HHHHHHHHHhCCCCeEEEEEC
Confidence 9998765443211 123344455677766655443
No 395
>PTZ00117 malate dehydrogenase; Provisional
Probab=85.76 E-value=11 Score=36.86 Aligned_cols=105 Identities=10% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh-chhhcCCCCCCCEEEEE-cchHHHHhhCCCCCccE
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKY-FPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~-~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fDv 219 (369)
..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ..+.....++.. +|-. -+ ..-|+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l-----~~ADi 76 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI-----KDSDV 76 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh-----CCCCE
Confidence 45899999988 666655555444457999999986644 2221 1111 111223345553 4533 22 23699
Q ss_pred EEEcCCCCCCCcc---c------cccHHHHHHHHHhccCCceEEec
Q 017607 220 IIVDSSDPVGPAQ---E------LVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~---~------L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
||+....+..+.. . -.-.++.+.+.+. .|++++++.
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivv 121 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICV 121 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 9976533332210 0 1123455566554 688876654
No 396
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.73 E-value=3.4 Score=39.74 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=64.7
Q ss_pred CEEEEEeCc--ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 144 KTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 144 ~~VLdIG~G--~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.+|+++|.| .|.+++.+.+......|++.|.+....+.+.+. .. .+. ...+.. . . .....|+||
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv-----~d~----~~~~~~--~-~-~~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GV-----IDE----LTVAGL--A-E-AAAEADLVI 69 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Cc-----ccc----cccchh--h-h-hcccCCEEE
Confidence 579999987 455666666665556788888888777766542 11 111 001110 1 1 124689999
Q ss_pred EcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHHHHHHCCC
Q 017607 222 VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISICRETFKG 280 (369)
Q Consensus 222 ~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~l~~~F~~ 280 (369)
+.. |... +.++++++...|++|-+++=. .| .-..+++.+++..+.
T Consensus 70 vav--Pi~~-----~~~~l~~l~~~l~~g~iv~Dv-~S------~K~~v~~a~~~~~~~ 114 (279)
T COG0287 70 VAV--PIEA-----TEEVLKELAPHLKKGAIVTDV-GS------VKSSVVEAMEKYLPG 114 (279)
T ss_pred Eec--cHHH-----HHHHHHHhcccCCCCCEEEec-cc------ccHHHHHHHHHhccC
Confidence 743 3332 457888888889987776632 22 224556666666653
No 397
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.48 E-value=3.5 Score=37.39 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~ 176 (369)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 45899999874 4444444 35688999999874
No 398
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.47 E-value=2.6 Score=37.29 Aligned_cols=101 Identities=27% Similarity=0.304 Sum_probs=56.8
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEE-EEEcchHHHHhhCCCCCccEEE
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVR-LHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~-v~~~Da~~~l~~~~~~~fDvIi 221 (369)
.++++++|..-=.+-...+++ +..+|..||.++--++ .+ + .+ |+. +...|...-.+.. .++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~-~-------~d-r~ssi~p~df~~~~~~y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EE-F-------RD-RLSSILPVDFAKNWQKY-AGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--cc-c-------cc-ccccccHHHHHHHHHHh-hccchhhh
Confidence 468999998865544444555 4678999998753221 11 1 11 222 2223433323333 36899887
Q ss_pred EcCC-CCCC------CccccccHHHHHHHHHhccCCceEEec
Q 017607 222 VDSS-DPVG------PAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 222 ~D~~-~p~~------~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+-.+ .+.+ |....-....+..++++||+||.|..-
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 4221 1111 112223456788999999999988753
No 399
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.29 E-value=17 Score=37.19 Aligned_cols=87 Identities=22% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCCEEEEEeCcccHHHH-HHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGGDGGVLR-EISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~-~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..++|+++|+|.=+... ..++..+ .+|+++|+|+.-...+... ..++ .+..+.+ +..|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-----------G~~v--~~l~eal-----~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-----------GFRV--MTMEEAA-----ELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-----------CCEe--cCHHHHH-----hCCCEE
Confidence 56799999998533332 2344443 4899999998765443321 1111 1223332 258988
Q ss_pred EEcCCCCCCCccccccHHHHH-HHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFD-TIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~-~~~~~LkpgGilv~~~ 257 (369)
|... + +...+. ...+.+++|++++..+
T Consensus 272 I~aT----G------~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 272 VTAT----G------NKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EECC----C------CHHHHHHHHHhcCCCCCEEEEcC
Confidence 7532 1 123444 5677899999888643
No 400
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.13 E-value=2.8 Score=36.62 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHhccccCCCCCCEEEEEeCcccHHH--HHHHhcCCCcEEEEEECCHHHHH
Q 017607 131 MIAHLPLCSIPSPKTVLVVGGGDGGVL--REISRHDSVELIDICEIDKMVID 180 (369)
Q Consensus 131 ~l~~~~l~~~~~p~~VLdIG~G~G~~~--~~l~k~~~~~~V~~VEid~~vi~ 180 (369)
||.++|+...-+.++||+||||.=+.- +.+++. ..+|++|+ |+..+
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs--p~~~~ 48 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS--PEICK 48 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc--CccCH
Confidence 345567665557889999999965443 334444 35788883 44443
No 401
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=85.06 E-value=4.2 Score=42.00 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..-++|+|+.+|.|+++..|.+.+ |.+.-.-|. .....++-. ++..-+-+ .-|--+-+... +.+||+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---ydRGLIG~-yhDWCE~fsTY-PRTYDLl 431 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---YDRGLIGV-YHDWCEAFSTY-PRTYDLL 431 (506)
T ss_pred cceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---hhcccchh-ccchhhccCCC-Ccchhhe
Confidence 456799999999999999987664 444333222 000111111 11111111 11222222223 4789999
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
-.+.-..... ..---...+-++-|.|+|+|.+++.
T Consensus 432 HA~~lfs~~~-~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 432 HADGLFSLYK-DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ehhhhhhhhc-ccccHHHHHHHhHhhcCCCceEEEe
Confidence 8653221111 1112246788999999999999974
No 402
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=84.90 E-value=1.4 Score=42.88 Aligned_cols=109 Identities=24% Similarity=0.334 Sum_probs=63.0
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc-------------hhhc---C-----------CCCC
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYF-------------PELA---V-----------GFED 195 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~-------------~~~~---~-----------~~~~ 195 (369)
+-+||+=|||.|.++.+++..+.. +-+=|.+--|+=.. .+. |..+ . .+.|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S-~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICS-SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHH-HHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 458999999999999999988643 33336655554221 111 0000 0 0000
Q ss_pred ----------CCEEEEEcchHHHHhhC-CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccc
Q 017607 196 ----------PRVRLHIGDAVEFLRQV-PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAE 258 (369)
Q Consensus 196 ----------~rv~v~~~Da~~~l~~~-~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~ 258 (369)
....+-.||..+..... ..+.||+|+...+- ..+.. -.++++.+.+.|+|||+.+....
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI--DTa~N--ileYi~tI~~iLk~GGvWiNlGP 297 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI--DTAHN--ILEYIDTIYKILKPGGVWINLGP 297 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe--echHH--HHHHHHHHHHhccCCcEEEeccc
Confidence 11233446655543322 12479999965331 11111 24789999999999999997543
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.88 E-value=5.3 Score=40.42 Aligned_cols=74 Identities=23% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH--HHHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV--EFLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~--~~l~~~~~~~f 217 (369)
..++|+++|+| .+++.+++. .....|+++|.|++.++..++.+ ..+.++.+|+. +.+++..-+++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 46789999996 444444432 12357999999999888776643 24678889985 34444334679
Q ss_pred cEEEEcCCC
Q 017607 218 DAIIVDSSD 226 (369)
Q Consensus 218 DvIi~D~~~ 226 (369)
|.||+-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 999875443
No 404
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.81 E-value=8.4 Score=32.49 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH-HHHhhCCCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV-EFLRQVPRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~-~~l~~~~~~~f 217 (369)
+.++||+||.| +.++.+++ ..+..+|+.+.-+.+-.+...+.++ ...++++.-+-. +.+ ..+
T Consensus 11 ~~~~vlviGaG--g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~~-----~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAG--GAARAVAAALAALGAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEAL-----QEA 76 (135)
T ss_dssp TTSEEEEESSS--HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHHH-----HTE
T ss_pred CCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHHH-----hhC
Confidence 56799999975 34444332 2356789999999775554444442 235666544322 222 369
Q ss_pred cEEEEcCCC
Q 017607 218 DAIIVDSSD 226 (369)
Q Consensus 218 DvIi~D~~~ 226 (369)
|+||.-.+.
T Consensus 77 DivI~aT~~ 85 (135)
T PF01488_consen 77 DIVINATPS 85 (135)
T ss_dssp SEEEE-SST
T ss_pred CeEEEecCC
Confidence 999965443
No 405
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.73 E-value=12 Score=36.18 Aligned_cols=107 Identities=14% Similarity=0.329 Sum_probs=54.8
Q ss_pred CEEEEEeCcc-cHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 144 KTVLVVGGGD-GGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 144 ~~VLdIG~G~-G~~~~~-l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
++|.+||+|. |..... ++......++..+|++++..+....-+.... .+....+.+..+|..+ . ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~----l--~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD----C--KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH----h--CCCCEEE
Confidence 3799999875 322222 2333322489999999887654433332211 1112334555555332 2 3599999
Q ss_pred EcCCCCCCCcc---ccc--cHHHHHHHHHh---ccCCceEEecc
Q 017607 222 VDSSDPVGPAQ---ELV--EKPFFDTIAKA---LRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~---~L~--~~ef~~~~~~~---LkpgGilv~~~ 257 (369)
+-...|..+.. .++ +...++.+.+. -.|+|++++-+
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 86655543321 111 12233333333 45788877544
No 406
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=84.71 E-value=8.1 Score=36.82 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=60.4
Q ss_pred CCCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 142 SPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
...+||+.|+ +.|..+..+++..+ .+|++++-++.-.+.+++.+.. +.-+.....+..+.+.....+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCceE
Confidence 4578999984 56666677777764 4799999888888877764431 1111111123323232222356998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+ |.. +. ..++.+.+.|+++|.++...
T Consensus 218 vi-~~~---g~-------~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 218 YF-DNV---GG-------EILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EE-Ecc---hH-------HHHHHHHHhcCCCceEEEEe
Confidence 87 332 11 25777888999999988643
No 407
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.42 E-value=2.1 Score=43.05 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=45.0
Q ss_pred CCEEEEEcchHHHHhhCCCCCccEEE-EcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 196 PRVRLHIGDAVEFLRQVPRGKYDAII-VDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 196 ~rv~v~~~Da~~~l~~~~~~~fDvIi-~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+++++.++..++++..+++++|..+ +|..| +..+ .. -.+.++.+.+.++|||.++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~D-wm~~-~~-~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMD-WMDP-EQ-LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhh-hCCH-HH-HHHHHHHHHHHhCCCCEEEEee
Confidence 68999999999999887778999776 45544 2222 22 2457889999999999998654
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.35 E-value=2.9 Score=41.26 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCEEEEEeCcc-cHH-HHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGD-GGV-LREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~-G~~-~~~l~k~~~~~~V~~VEid~ 176 (369)
..+||+||+|. |.. +..|++. ++.+++.||-|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 46899999984 332 3334444 578999999983
No 409
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.24 E-value=20 Score=34.78 Aligned_cols=103 Identities=18% Similarity=0.274 Sum_probs=54.6
Q ss_pred EEEEEeCcc-cHHH-HHHHhcCCCcEEEEEECCHHHHH-HHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEE
Q 017607 145 TVLVVGGGD-GGVL-REISRHDSVELIDICEIDKMVID-VSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 145 ~VLdIG~G~-G~~~-~~l~k~~~~~~V~~VEid~~vi~-~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi 221 (369)
+|.+||+|. |... ..++......++..+|++++..+ .+... ... ..+. +...+..+|..+ . ...|+||
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl-~~~-~~~~-~~~~i~~~d~~~----l--~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDL-AHG-TPFV-KPVRIYAGDYAD----C--KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHH-Hcc-cccc-CCeEEeeCCHHH----h--CCCCEEE
Confidence 689999986 3332 23344443468999999987665 22221 111 0122 234555555322 2 3589999
Q ss_pred EcCCCCCCCccccc-----cH----HHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQELV-----EK----PFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~L~-----~~----ef~~~~~~~LkpgGilv~~~ 257 (369)
+-...+..+....+ +. ++.+.+.+ ..|+|++++-+
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 87665544322111 22 33333333 45889887653
No 410
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.04 E-value=16 Score=37.72 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhch
Q 017607 143 PKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFP 187 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~ 187 (369)
.-+++|+=||.|++..-+-..+ ...|.++|+|+...+.-+.+++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcC
Confidence 3489999999999998886653 5678899999999999888874
No 411
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=84.04 E-value=7.7 Score=39.75 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEEEEeCcccHHHHHHHh----c---CCCcEEEEEECCHHHHHHHHh
Q 017607 145 TVLVVGGGDGGVLREISR----H---DSVELIDICEIDKMVIDVSKK 184 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k----~---~~~~~V~~VEid~~vi~~ar~ 184 (369)
+|.+||+|+. .+..+.+ . .+..+|+.+|||++-++...+
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 6889999996 6655543 2 356799999999987775433
No 412
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.02 E-value=12 Score=36.17 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=56.3
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.++.+||+.|+|. |..+..+++..+..+|.+++-+++-.+.++++ .. +.-+.....+.....+....+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence 3567898866542 34445567766544688887777776666653 21 1111111223221222223357998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+-... .......+.+.|+++|.++...
T Consensus 235 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG----------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence 884221 1235677889999999998643
No 413
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.98 E-value=35 Score=33.27 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=61.2
Q ss_pred ceEEEEEecCcee-EEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHH--HHHHHhcCCCcEEEEEEC
Q 017607 98 QEVLVFESLAYGK-VLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGV--LREISRHDSVELIDICEI 174 (369)
Q Consensus 98 q~I~v~~~~~~G~-~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~--~~~l~k~~~~~~V~~VEi 174 (369)
+.|.+++.. -|. ..++||.....-+-.. -.-..+ -.+..+++++|++||+|.=+- +..++...+.++|..++.
T Consensus 85 g~i~l~d~~-tG~p~a~~d~~~lT~~RTaa-~sala~--~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFE-TGEVLAILDGTYLTQIRTGA-LSGVAT--KYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCC-CCceEEEEccchhhhhhHHH-HHHHHH--HHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 456666654 454 3456776544222211 111111 112345678999999985432 223344456789999999
Q ss_pred CHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCC
Q 017607 175 DKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 225 (369)
Q Consensus 175 d~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 225 (369)
+++-.+...+.+... + ..++. ...|..+.+ ...|+|++-.+
T Consensus 161 ~~~~a~~~~~~~~~~---~-~~~~~-~~~~~~~~~-----~~aDiVi~aT~ 201 (325)
T PRK08618 161 TFEKAYAFAQEIQSK---F-NTEIY-VVNSADEAI-----EEADIIVTVTN 201 (325)
T ss_pred CHHHHHHHHHHHHHh---c-CCcEE-EeCCHHHHH-----hcCCEEEEccC
Confidence 988766544444321 0 11222 245655544 24899996543
No 414
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=83.91 E-value=7.1 Score=41.10 Aligned_cols=96 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred CEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCccE
Q 017607 144 KTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDA 219 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~fDv 219 (369)
.+|+++|+|. .++.+++. ....+++++|.|++.++.+++. ..+++.+|+.+ .+++..-++.|.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 5789999884 44455442 1235799999999998887652 36788999864 355444468998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
+++...+... ....-.+.+.+.|+-.++..+.+
T Consensus 485 viv~~~~~~~-------~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 485 LLLTIPNGYE-------AGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred EEEEcCChHH-------HHHHHHHHHHHCCCCeEEEEECC
Confidence 8765544211 11233344566787777765543
No 415
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=83.90 E-value=12 Score=36.02 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=58.0
Q ss_pred CCCCEEEEEeCcccHHH---HHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCC
Q 017607 141 PSPKTVLVVGGGDGGVL---REISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGK 216 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~---~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~ 216 (369)
.+..+||+.|+ |.++ ..+++..+..+|++++.++.-.+.+++.-. +.-+.....+....+.. .....
T Consensus 165 ~~g~~vlI~g~--g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~i~~~~~~~~ 235 (345)
T cd08286 165 KPGDTVAIVGA--GPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-------THTVNSAKGDAIEQVLELTDGRG 235 (345)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-------CceeccccccHHHHHHHHhCCCC
Confidence 35678998764 4444 445666654578889999888777775321 11122222333332322 22346
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+|+ |.. +. ...++.+.+.|+++|.++...
T Consensus 236 ~d~vl-d~~---g~------~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 236 VDVVI-EAV---GI------PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CCEEE-ECC---CC------HHHHHHHHHhccCCcEEEEec
Confidence 99887 332 11 234677889999999998643
No 416
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.78 E-value=6.4 Score=41.93 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=62.0
Q ss_pred CEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCccE
Q 017607 144 KTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDA 219 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~fDv 219 (369)
.+|+++|+|. .++.+++. ....+++++|.|++.++.+++. ...++.+|+.+ .+++..-++.|+
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 4799998874 33444332 1234799999999999988752 35688999864 455544467999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
|++-..++.. +. ..-...|.+.|+..++..+.+
T Consensus 468 vv~~~~d~~~------n~-~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCNEPED------TM-KIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeCCHHH------HH-HHHHHHHHHCCCCeEEEEeCC
Confidence 9875544211 11 233445668888888766544
No 417
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.74 E-value=3.1 Score=40.55 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=49.3
Q ss_pred EEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCC
Q 017607 146 VLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 225 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 225 (369)
|+++-||.|++..-+.+.. ..-+.++|+|+..++.-+.+++. .++.+|..+.-... -...|+|+...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 5889999999988776654 55678899999999999988752 34567877653221 135899996543
No 418
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=83.34 E-value=10 Score=36.53 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=60.1
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCcc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fD 218 (369)
....+||+.|+|. |..+..+++... .+|+++.-+++..+.++++-. +.-+.....+..+.+.. .....+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g~-------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELGA-------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhCC-------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567999997653 556667777754 578888888888887755321 11122222233333332 2334699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|+-.. + ....+..+.+.|+++|.++..
T Consensus 230 ~vld~~----g------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDAT----G------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECC----C------CHHHHHHHHHHHhcCCEEEEE
Confidence 988432 1 123577888999999998854
No 419
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.28 E-value=11 Score=35.04 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+..+||+.|+|. |..+..+++..+..+|++++.+++..+.++++- .. +.-+.. .. ... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~-----~~~~~~-~~---~~~---~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA-----DPVAAD-TA---DEI---GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC-----cccccc-ch---hhh---cCCCCCE
Confidence 3567899998654 555566677665544999999998888777642 00 100100 00 111 2346998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+.... .........+.|+++|.++...
T Consensus 163 vl~~~~----------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASG----------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccC----------ChHHHHHHHHHhcCCcEEEEEe
Confidence 884221 1235678888999999998643
No 420
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=2.2 Score=42.30 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCCCCEEEEEeCcccHHHHHHHhcC--------CCcEEEEEECCHHHHHHHHhhchhh
Q 017607 140 IPSPKTVLVVGGGDGGVLREISRHD--------SVELIDICEIDKMVIDVSKKYFPEL 189 (369)
Q Consensus 140 ~~~p~~VLdIG~G~G~~~~~l~k~~--------~~~~V~~VEid~~vi~~ar~~~~~~ 189 (369)
.|.|-.+++||.|.|.+++.+++.. ...++..||++++..+.-|+.+...
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3567789999999999999887642 3578999999999999888776544
No 421
>PRK06141 ornithine cyclodeaminase; Validated
Probab=82.87 E-value=48 Score=32.18 Aligned_cols=113 Identities=14% Similarity=0.171 Sum_probs=60.8
Q ss_pred ceEEEEEecCcee-EEEEcCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHH--HHhcCCCcEEEEEEC
Q 017607 98 QEVLVFESLAYGK-VLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEI 174 (369)
Q Consensus 98 q~I~v~~~~~~G~-~l~lDg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEi 174 (369)
+.|.+++.. -|. .-++||.....-+-.. -....+. .+..++.++|++||+|.=+.... ++...+..+|.+++.
T Consensus 83 g~v~l~d~~-tG~p~ai~d~~~lT~~RTaa-~sala~~--~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 83 STYLLFDGR-TGEPLALVDGTELTARRTAA-ASALAAS--YLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred EEEEEEECC-CCCEEEEEcCcchhcchhHH-HHHHHHH--HhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 345566554 455 4466876554322211 1111111 12345788999999875444332 233346789999999
Q ss_pred CHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCC
Q 017607 175 DKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSS 225 (369)
Q Consensus 175 d~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 225 (369)
+++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 159 s~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av-----~~aDIVi~aT~ 198 (314)
T PRK06141 159 DPAKAEALAAELRAQ-----GFDAEV-VTDLEAAV-----RQADIISCATL 198 (314)
T ss_pred CHHHHHHHHHHHHhc-----CCceEE-eCCHHHHH-----hcCCEEEEeeC
Confidence 988766555544321 112332 34544443 35899875443
No 422
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.86 E-value=3.9 Score=43.24 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=65.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH-----HHhh-CC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHDS-VELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE-----FLRQ-VP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~~-~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~-----~l~~-~~ 213 (369)
.....|||+||..|+......+..| ..-|++|||-|.- | -|++..+++|... -++. ..
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------p-------~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------P-------IPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------c-------CCccchhhhhhhHHHHHHHHHHHHH
Confidence 3566899999999999988877644 4458889996541 1 1344444555421 1111 11
Q ss_pred CCCccEEEEcCCCCCCCc-------cccccHHHHHHHHHhccCCceEEecc
Q 017607 214 RGKYDAIIVDSSDPVGPA-------QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 214 ~~~fDvIi~D~~~p~~~~-------~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.-+.|+|+.|....++.. ....+...++.+...|..||.+++-.
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv 158 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV 158 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence 235699999976655432 11234455677888899999998654
No 423
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=82.73 E-value=14 Score=41.83 Aligned_cols=106 Identities=12% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCEEEEEeCcc-cH-HHHHHHhcCCCc------------EEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH
Q 017607 143 PKTVLVVGGGD-GG-VLREISRHDSVE------------LIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF 208 (369)
Q Consensus 143 p~~VLdIG~G~-G~-~~~~l~k~~~~~------------~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~ 208 (369)
.++||+||+|- |. .++.+++.+... .|+++|++++-.+.+.+.++.. .-+.+-..|..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~------~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA------EAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC------ceEEeecCCHHHH
Confidence 56999999973 33 334455543322 4899999987766544433210 1133334454443
Q ss_pred HhhCCCCCccEEEEcCCCCCCCc---------ccc----ccHHHHHHHHHhccCCceEEec
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPA---------QEL----VEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~---------~~L----~~~ef~~~~~~~LkpgGilv~~ 256 (369)
.... ...|+||+-.+...+.. .++ +..+-.+.+.+.-+.-|+.++.
T Consensus 643 ~~~v--~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 643 LKYV--SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred HHhh--cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3222 24999998665433210 011 2333345555666666765543
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.70 E-value=6.4 Score=40.08 Aligned_cols=105 Identities=22% Similarity=0.376 Sum_probs=61.9
Q ss_pred CCCEEEEEeC-cccHH------HHHHHhcCCCcEEEEEEC-CHHHHHHHHhhchhhcCCCCCCCEEEEE----cchH---
Q 017607 142 SPKTVLVVGG-GDGGV------LREISRHDSVELIDICEI-DKMVIDVSKKYFPELAVGFEDPRVRLHI----GDAV--- 206 (369)
Q Consensus 142 ~p~~VLdIG~-G~G~~------~~~l~k~~~~~~V~~VEi-d~~vi~~ar~~~~~~~~~~~~~rv~v~~----~Da~--- 206 (369)
.|..||.+|. |+|-+ +.++.++...--++++|+ -|..++..+......+ +.++- .|..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~-------v~~f~~~~~~~Pv~Ia 171 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG-------VPFFGSGTEKDPVEIA 171 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC-------CceecCCCCCCHHHHH
Confidence 4677999985 55543 344444332223666776 4666666665443332 22221 1222
Q ss_pred -HHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEe
Q 017607 207 -EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 207 -~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
+-++....+.||+||+|...-.+....|+.+ ++.+++.++|+=++.+
T Consensus 172 k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~E--l~~Ik~~~~P~E~llV 219 (451)
T COG0541 172 KAALEKAKEEGYDVVIVDTAGRLHIDEELMDE--LKEIKEVINPDETLLV 219 (451)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccccHHHHHH--HHHHHhhcCCCeEEEE
Confidence 2233333467999999987655555555544 7788999999987764
No 425
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.59 E-value=16 Score=35.68 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=42.0
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-CCCCCCCEEEEE-cchHHHHhhCCCCCccE
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-VGFEDPRVRLHI-GDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-~~~~~~rv~v~~-~Da~~~l~~~~~~~fDv 219 (369)
..+|.+||+|. |.....++...+...++.+|++++..+ ++ .+...+ ..+.+...++.. +|.. .. ..-|+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-~ld~~~~~~~~~~~~~I~~~~d~~----~l--~~aDi 77 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-ALDISHSNVIAGSNSKVIGTNNYE----DI--AGSDV 77 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-HHHHHhhhhccCCCeEEEECCCHH----Hh--CCCCE
Confidence 46899999987 333333333334456999999998642 11 111110 012233456664 6642 22 24799
Q ss_pred EEEcCCCC
Q 017607 220 IIVDSSDP 227 (369)
Q Consensus 220 Ii~D~~~p 227 (369)
||.....+
T Consensus 78 VI~tag~~ 85 (321)
T PTZ00082 78 VIVTAGLT 85 (321)
T ss_pred EEECCCCC
Confidence 99755433
No 426
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.04 E-value=6.5 Score=41.03 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred CCCEEEEEeCccc--HHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh-----cCC-CC-------CCCEEEEEcchH
Q 017607 142 SPKTVLVVGGGDG--GVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL-----AVG-FE-------DPRVRLHIGDAV 206 (369)
Q Consensus 142 ~p~~VLdIG~G~G--~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~-----~~~-~~-------~~rv~v~~~Da~ 206 (369)
+.++|-+||+|.- +++..+++.. .+|+++|.+++.++.+++++... ..+ +. -.+++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG--~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAG--HQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 4568999999953 3444455553 58999999999998765543211 001 10 0133332 3322
Q ss_pred HHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 207 EFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 207 ~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.. ...|+||.-.++... ....+|+.+.+.++|+-+++.++.+
T Consensus 81 ----~l--~~aDlVIEav~E~~~-----vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 ----AL--ADAGLVIEAIVENLE-----VKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred ----Hh--CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEECCCC
Confidence 22 258999965544222 2456788888888888888776644
No 427
>PRK06223 malate dehydrogenase; Reviewed
Probab=82.02 E-value=17 Score=34.93 Aligned_cols=106 Identities=17% Similarity=0.254 Sum_probs=54.1
Q ss_pred CEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCccEEE
Q 017607 144 KTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDAII 221 (369)
Q Consensus 144 ~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fDvIi 221 (369)
.+|-+||+|. |......+...+..+|..+|++++..+-...-+.... .......++.. .|... . ..-|+||
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~~~----~--~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDYED----I--AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCHHH----H--CCCCEEE
Confidence 4899999987 5555444433221289999998886542111111110 11111234443 44322 2 2479999
Q ss_pred EcCCCCCCCccc---------cccHHHHHHHHHhccCCceEEecc
Q 017607 222 VDSSDPVGPAQE---------LVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 222 ~D~~~p~~~~~~---------L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+....|..+... -.-.++++.+.+.. |++++++.+
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 765544433211 11234555555544 778776543
No 428
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=82.00 E-value=3.7 Score=37.82 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=54.0
Q ss_pred ccccCCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECC--HHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC
Q 017607 135 LPLCSIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEID--KMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV 212 (369)
Q Consensus 135 ~~l~~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid--~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~ 212 (369)
+|+...-..++||+||||+-+.-+.=+-....++|+++-.+ +++-.... ..++.++. +.++. ..
T Consensus 4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~-----------~~~i~~~~-~~~~~--~~ 69 (210)
T COG1648 4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIE-----------EGKIKWIE-REFDA--ED 69 (210)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHH-----------hcCcchhh-cccCh--hh
Confidence 34433335789999999987776542222223566665433 33322222 12344444 22221 11
Q ss_pred CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEeccccc
Q 017607 213 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESM 260 (369)
Q Consensus 213 ~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~ 260 (369)
...+++||....| .+.-+.+.+..++-++++..++.|
T Consensus 70 -~~~~~lviaAt~d----------~~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 70 -LDDAFLVIAATDD----------EELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred -hcCceEEEEeCCC----------HHHHHHHHHHHHHhCCceeccCCc
Confidence 1238888876544 234556666777778888766543
No 429
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=81.69 E-value=0.2 Score=41.24 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=27.0
Q ss_pred CccEEEEcCCCCCCCcc--ccccHHHHHHHHHhccCCceEEecccccch
Q 017607 216 KYDAIIVDSSDPVGPAQ--ELVEKPFFDTIAKALRPGGVLCNMAESMWL 262 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~--~L~~~ef~~~~~~~LkpgGilv~~~~s~~~ 262 (369)
+||+|++=+..-|-..+ .---..||+.+.+.|+|||+|++.. .+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp-Q~w~ 48 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP-QPWK 48 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC-CCcH
Confidence 48999864432221100 0012569999999999999999853 3453
No 430
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=81.66 E-value=3.8 Score=37.91 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGD-GGVLREISRHDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~ 176 (369)
..+|+++|||. |+.....+-..++.+++.+|-|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46899999983 33333333334688999997654
No 431
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=81.58 E-value=4.3 Score=39.16 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~ 176 (369)
..+||++|+| +++.++++ ..++.+++.+|-|.
T Consensus 19 ~s~VLIvG~g--GLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLG--GLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCC--HHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4589999987 34445554 34688999999774
No 432
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=81.57 E-value=15 Score=35.36 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fD 218 (369)
.+.++||+.|+| .|..+..+++..+...|++++-++.-.+.+++.-. +.-+.....+..+.+.+. ..+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 356788886543 23344556676554458888888887777665311 111122223443333332 235699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+-... ....+..+.+.|+++|.++...
T Consensus 233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence 8874211 1235778889999999988654
No 433
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=81.41 E-value=14 Score=37.04 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=60.1
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE---cchHHHHhh-CCCC
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQ-VPRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~Da~~~l~~-~~~~ 215 (369)
...++||+.|+| -|..+..+++..+...|+++|.+++-.+.+++. .. . .+.. .+..+.+.+ ....
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence 346789987654 233344567776666677789999888888874 21 1 1211 133333333 2234
Q ss_pred CccEEEEcCCCCCC--Cc--cccccHHHHHHHHHhccCCceEEecc
Q 017607 216 KYDAIIVDSSDPVG--PA--QELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 216 ~fDvIi~D~~~p~~--~~--~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+|+||--...+.. .. ...-....++.+.+.++++|.+++..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 69988732221110 00 00001135788889999999998744
No 434
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.39 E-value=6 Score=38.31 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=44.3
Q ss_pred EEEEeCcccHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEE----EEcchHHH--Hhh-CCCC
Q 017607 146 VLVVGGGDGGVLREISRH---DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL----HIGDAVEF--LRQ-VPRG 215 (369)
Q Consensus 146 VLdIG~G~G~~~~~l~k~---~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v----~~~Da~~~--l~~-~~~~ 215 (369)
||+-| |+|.++.++.++ ...++++++|.|+.-+-..++.+.... .++++++ +.+|.++. +.. ....
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 45555 568999888764 334789999999998887777764221 1345544 58887654 222 2335
Q ss_pred CccEEEEcCC
Q 017607 216 KYDAIIVDSS 225 (369)
Q Consensus 216 ~fDvIi~D~~ 225 (369)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 7999996543
No 435
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.33 E-value=17 Score=36.58 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=72.3
Q ss_pred CEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH--HhhCCCCCcc
Q 017607 144 KTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYD 218 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~--l~~~~~~~fD 218 (369)
++||+|||| .+++.++. .....+|+++|-+++-.+.+.... .++++.+.-|+.+. +.+.- ..+|
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li-~~~d 70 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALI-KDFD 70 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHH-hcCC
Confidence 579999994 45544432 233479999999988777665543 24777777776543 22221 3469
Q ss_pred EEEEcCCCCCCCc-------------cccccHHHHHHHHHhccCCceEEecccccchhhhHHHHHHHH-HHHHCC--CCe
Q 017607 219 AIIVDSSDPVGPA-------------QELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIEDMISI-CRETFK--GSV 282 (369)
Q Consensus 219 vIi~D~~~p~~~~-------------~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~~~~~i~~~-l~~~F~--~~v 282 (369)
+||.-++.+.... .--+..+....+...-+..|+.++... -+.+-...-+... .++.|. +.+
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~--G~dPGi~nv~a~~a~~~~~~~i~si 148 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC--GFDPGITNVLAAYAAKELFDEIESI 148 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc--CcCcchHHHHHHHHHHHhhccccEE
Confidence 9996543322110 001112222344444555666554321 1233333333333 344552 234
Q ss_pred eEEEEEEeeccCC
Q 017607 283 HYAWASVPTYPSG 295 (369)
Q Consensus 283 ~~~~~~vP~~p~g 295 (369)
..+....|..+.+
T Consensus 149 ~iy~g~~g~~~~~ 161 (389)
T COG1748 149 DIYVGGLGEHGDN 161 (389)
T ss_pred EEEEecCCCCCCC
Confidence 5566667777633
No 436
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.17 E-value=14 Score=35.76 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCCEEEEEeCcccHH-HHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEE-EcchHHHHhhCCCCCccE
Q 017607 142 SPKTVLVVGGGDGGV-LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH-IGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~-~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~-~~Da~~~l~~~~~~~fDv 219 (369)
.+++|++||.|.-+. +...++..+ .+|++++.++...+.++.. . .+.+ ..+..+.+ ..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~l-----~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEEV-----GKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHHh-----CCCCE
Confidence 468999999874222 222334443 5899999998766555432 1 1111 12222322 36999
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
||.-.+ . .+ +-+.+.+.++++++++-.+.+
T Consensus 214 VI~t~p--~----~~----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 214 IFNTIP--A----LV----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred EEECCC--h----hh----hhHHHHHcCCCCcEEEEEccC
Confidence 997432 1 11 223455678898887754433
No 437
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=81.13 E-value=12 Score=36.07 Aligned_cols=99 Identities=16% Similarity=0.329 Sum_probs=58.2
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCccE
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYDA 219 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fDv 219 (369)
+.++||+.|+|. |..+..+++..+..+|++++-+++-.+.+++. .. +.-+.....+..+.+... ..+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 567898876543 44555667776555788888888777776652 11 110111112333333322 2356998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+--. + ....++.+.+.|+++|.++...
T Consensus 236 v~d~~----g------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMS----G------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECC----C------CHHHHHHHHHHHhcCCEEEEEe
Confidence 87311 1 1235778889999999998764
No 438
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.95 E-value=31 Score=31.44 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=47.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH------HHhhC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~------~l~~~- 212 (369)
..++||+.| |+|.+++.+++.. ...+|++++.+++-++...+.+... ..+++++..|..+ .++..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 357888888 5566776666531 2357999999988776555544322 2357777777532 12111
Q ss_pred -CCCCccEEEEcCC
Q 017607 213 -PRGKYDAIIVDSS 225 (369)
Q Consensus 213 -~~~~fDvIi~D~~ 225 (369)
..+..|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899997553
No 439
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.94 E-value=9.5 Score=29.80 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhcc
Q 017607 169 IDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALR 248 (369)
Q Consensus 169 V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~Lk 248 (369)
|..||=++...+..++.+... +-..-....|+.+.+.......||+|++|...+... ..++++.+++.-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-----~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~~- 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-----GYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQIN- 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHHT-
T ss_pred cEEEECCHHHHHHHHHHHHhC-----CCCEEEEECCHHHHHHHhcccCceEEEEEeeecccc-----cccccccccccc-
Confidence 567899999999999988733 111223556665555433345699999997665533 346788886666
Q ss_pred CCceEEecc
Q 017607 249 PGGVLCNMA 257 (369)
Q Consensus 249 pgGilv~~~ 257 (369)
++..+++.+
T Consensus 70 ~~~~ii~~t 78 (112)
T PF00072_consen 70 PSIPIIVVT 78 (112)
T ss_dssp TTSEEEEEE
T ss_pred ccccEEEec
Confidence 666666544
No 440
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.87 E-value=20 Score=33.61 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=60.6
Q ss_pred CCCCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
....+||+.|+ +-|..+..+++..+ .+|+++..+++-.+.++++ .. ..+-....+..+.+... .+.+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GA-------DEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC-------cEEEecCccHHHHHHHh-CCCce
Confidence 45689999984 56777777888765 5688888888877776542 21 11110122333334443 45799
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+- ... ...+..+.+.|+++|.++...
T Consensus 211 ~vl~-~~~----------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 211 KVLE-LVG----------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EEEE-CCC----------hHHHHHHHHHhccCCEEEEEc
Confidence 8883 221 124667789999999998643
No 441
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=80.63 E-value=21 Score=34.11 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fD 218 (369)
....+||+.|+| -|..+..++++....+|++++-+++-.+.++++ .. +.-+.... .+..+.+.+... .+|
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~v~~~~~-~~d 232 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA------DLTINSKRVEDVAKIIQEKTG-GAH 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC------cEEecccccccHHHHHHHhcC-CCc
Confidence 456799999853 234444556652235899999999988888653 21 11111111 222333433323 588
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+++.+... .+.++.+.+.|+++|.++...
T Consensus 233 ~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 233 AAVVTAVA----------KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred EEEEeCCC----------HHHHHHHHHhccCCCEEEEEe
Confidence 66655421 246788899999999998643
No 442
>PRK07340 ornithine cyclodeaminase; Validated
Probab=80.53 E-value=29 Score=33.58 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=45.3
Q ss_pred CCCCEEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
+++++|++||+|.=+-... ++...+..+|.+.+.+++-.+...+.+... .+.+...|..+.+ ...|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-------~~~~~~~~~~~av-----~~aD 190 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-------GPTAEPLDGEAIP-----EAVD 190 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-------CCeeEECCHHHHh-----hcCC
Confidence 5678999999975333322 222345689999999988766555554321 1233345655544 3599
Q ss_pred EEEEcCC
Q 017607 219 AIIVDSS 225 (369)
Q Consensus 219 vIi~D~~ 225 (369)
+|++-.+
T Consensus 191 iVitaT~ 197 (304)
T PRK07340 191 LVVTATT 197 (304)
T ss_pred EEEEccC
Confidence 9996544
No 443
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=80.46 E-value=13 Score=34.26 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCCCCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhh
Q 017607 139 SIPSPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPEL 189 (369)
Q Consensus 139 ~~~~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~ 189 (369)
.+..|-+.|+.|.|-..+.-.-+.+. .+-+.+|=|+..++.+++..|..
T Consensus 36 ~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p~l 84 (225)
T TIGR01627 36 TRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPPNT 84 (225)
T ss_pred HhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCCcc
Confidence 34568899999999998887777775 46688999999999988876654
No 444
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.41 E-value=20 Score=32.88 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH------HHhhC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~------~l~~~- 212 (369)
..++||+.|+ +|.+++.++++. ...+|++++.+++.++...+.+... ..++.++..|..+ .++..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA-----GGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc-----CCceEEEEccCCCHHHHHHHHHHHH
Confidence 4567888875 556676665531 2358999999987665544444322 3457777777432 22211
Q ss_pred -CCCCccEEEEcCC
Q 017607 213 -PRGKYDAIIVDSS 225 (369)
Q Consensus 213 -~~~~fDvIi~D~~ 225 (369)
.-++.|+||....
T Consensus 84 ~~~~~id~vi~~ag 97 (256)
T PRK06124 84 AEHGRLDILVNNVG 97 (256)
T ss_pred HhcCCCCEEEECCC
Confidence 1146899997643
No 445
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.21 E-value=3.9 Score=40.89 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECC
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEID 175 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid 175 (369)
...+||++|+|. |......+...++.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999874 4433333334457899999998
No 446
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.15 E-value=7.2 Score=32.94 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEeCc-ccHH-HHHHHhcCCCcEEEEEECCH
Q 017607 145 TVLVVGGG-DGGV-LREISRHDSVELIDICEIDK 176 (369)
Q Consensus 145 ~VLdIG~G-~G~~-~~~l~k~~~~~~V~~VEid~ 176 (369)
+||++|+| .|.. +..|++ .+..+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence 58999997 2332 222333 4578999999873
No 447
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=80.08 E-value=37 Score=34.13 Aligned_cols=108 Identities=10% Similarity=0.191 Sum_probs=57.3
Q ss_pred EEEEEeCcccHHHHH-HHhcCCCcEEEEEECCHHHHHHHHhhchhhcC-CCC----CCCEEEEEc-chHHHHhhCCCCCc
Q 017607 145 TVLVVGGGDGGVLRE-ISRHDSVELIDICEIDKMVIDVSKKYFPELAV-GFE----DPRVRLHIG-DAVEFLRQVPRGKY 217 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~-l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~-~~~----~~rv~v~~~-Da~~~l~~~~~~~f 217 (369)
+|-+||.|-=++... ++.. + -+|+++|+|++.++..++-...... +++ ..+.++... |..+.+ ..-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~-----~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY-----RDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh-----cCC
Confidence 588899884333322 2223 2 5799999999999988774322110 100 012222211 111111 347
Q ss_pred cEEEEcCCCCCCCcccccc----HHHHHHHHHhccCCceEEeccccc
Q 017607 218 DAIIVDSSDPVGPAQELVE----KPFFDTIAKALRPGGVLCNMAESM 260 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~----~ef~~~~~~~LkpgGilv~~~~s~ 260 (369)
|+||+..+.|.......+. .+.++.+.+ +++|.+++..+..+
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 9999887776432211222 334556666 67777776655433
No 448
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.08 E-value=3.4 Score=37.53 Aligned_cols=85 Identities=21% Similarity=0.377 Sum_probs=51.2
Q ss_pred CCCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 140 IPSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 140 ~~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
.+.+++||++|.- +|....+++.. ..+|+++||.|.+ |.++| +++++... +.+ ..+.||
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~----r~~lp--------~~v~Fr~~--~~~----~~G~~D 101 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM----RGFLP--------NNVKFRNL--LKF----IRGEVD 101 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH----HhcCC--------CCccHhhh--cCC----CCCcee
Confidence 4678999999964 56666666543 3589999999887 34444 34544432 222 357899
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
+|+ |.+.-.+. +++|+ +.++|+-.++
T Consensus 102 liv-DlTGlGG~-----~Pe~L----~~fnp~vfiV 127 (254)
T COG4017 102 LIV-DLTGLGGI-----EPEFL----AKFNPKVFIV 127 (254)
T ss_pred EEE-eccccCCC-----CHHHH----hccCCceEEE
Confidence 876 44432222 23444 3577755444
No 449
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=79.47 E-value=28 Score=31.87 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH------HHhhC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~------~l~~~- 212 (369)
..++||+.|+ +|.+++.++++. ...+|++++.++.-++...+.+... ..++.++..|..+ .++..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 3568998885 567777776641 2357999999887665444444321 2457777777642 11111
Q ss_pred -CCCCccEEEEcCC
Q 017607 213 -PRGKYDAIIVDSS 225 (369)
Q Consensus 213 -~~~~fDvIi~D~~ 225 (369)
.-+..|+||....
T Consensus 83 ~~~~~~d~li~~ag 96 (255)
T PRK07523 83 AEIGPIDILVNNAG 96 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899997654
No 450
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=79.24 E-value=20 Score=34.70 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=27.2
Q ss_pred CCCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHHHH-HHHHh
Q 017607 142 SPKTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVI-DVSKK 184 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~vi-~~ar~ 184 (369)
...+|++||+|. +++.+++ .....+|++++.+++-. +++++
T Consensus 177 ~~~~V~ViGaG~--iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~ 221 (311)
T cd05213 177 KGKKVLVIGAGE--MGELAAKHLAAKGVAEITIANRTYERAEELAKE 221 (311)
T ss_pred cCCEEEEECcHH--HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 467999999864 4443333 33457899999998754 45544
No 451
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.21 E-value=41 Score=31.98 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=40.5
Q ss_pred cCeEeecccchhHHHHHHHh-ccccCCCCCCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHHHHHHHHhhc
Q 017607 115 DGIVQLTEKDECAYQEMIAH-LPLCSIPSPKTVLVVGGGDGGVLREISR---HDSVELIDICEIDKMVIDVSKKYF 186 (369)
Q Consensus 115 Dg~~q~~~~de~~Y~e~l~~-~~l~~~~~p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~vi~~ar~~~ 186 (369)
||.+.-...|.......+.. ... ....++||++|+| +.++.+++ ..+..+|++++-+++-.+...+.+
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~--~~~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV--DLKGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC--CCCCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 45555455565444555542 211 1346789999974 55555543 234578999999987665544444
No 452
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.80 E-value=22 Score=32.41 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=44.5
Q ss_pred CEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH--HhhCCCCCccE
Q 017607 144 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--LRQVPRGKYDA 219 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~--l~~~~~~~fDv 219 (369)
++||+.|+ +|++++.++++. ...+|+++.-++.-.+..+...... ..++.++..|..+. +........|+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-----GLALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 46888876 456777666531 2357888888776554444332221 23577777776432 22222247999
Q ss_pred EEEcCC
Q 017607 220 IIVDSS 225 (369)
Q Consensus 220 Ii~D~~ 225 (369)
||....
T Consensus 77 vi~~ag 82 (257)
T PRK09291 77 LLNNAG 82 (257)
T ss_pred EEECCC
Confidence 997654
No 453
>PRK10083 putative oxidoreductase; Provisional
Probab=78.78 E-value=21 Score=34.28 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhc-CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCcc
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRH-DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~-~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD 218 (369)
....+||+.|+|. |..+..+++. .+...+++++.+++-.+.++++-. +.-+.....+..+.+... ...+|
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-------~~~i~~~~~~~~~~~~~~-g~~~d 230 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-------DWVINNAQEPLGEALEEK-GIKPT 230 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-------cEEecCccccHHHHHhcC-CCCCC
Confidence 3467999999542 2223345553 355678889999999888876421 111111122333333321 22356
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+ |... ....+..+.+.|+++|.++...
T Consensus 231 ~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 231 LII-DAAC---------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 665 3321 1235778889999999998654
No 454
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.66 E-value=38 Score=30.63 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=45.5
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH------HhhC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~------l~~~- 212 (369)
..+++|+.|+ +|.+++.+++.. ...+|++++.++.-.+...+.+... ..++.++..|..+. ++..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-----GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3467888874 566666665531 2358999999887655444333321 34678888886432 1110
Q ss_pred -CCCCccEEEEcC
Q 017607 213 -PRGKYDAIIVDS 224 (369)
Q Consensus 213 -~~~~fDvIi~D~ 224 (369)
.-++.|+||...
T Consensus 79 ~~~~~id~lv~~a 91 (241)
T PRK07454 79 EQFGCPDVLINNA 91 (241)
T ss_pred HHcCCCCEEEECC
Confidence 113589999754
No 455
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=78.64 E-value=20 Score=34.91 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcc---hHHHHhh-CCCCC
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGD---AVEFLRQ-VPRGK 216 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~D---a~~~l~~-~~~~~ 216 (369)
...+||+.|+| .|..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+ ....+.+ .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA------DATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------CeEEcCcccccHHHHHHHHHHhCCCC
Confidence 56789998753 233334466666554899999988887777642 21 1001111111 1112222 22346
Q ss_pred ccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 217 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 217 fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+|+-.. +. ...+....+.|+++|.++...
T Consensus 250 ~d~vid~~----g~------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEAS----GH------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECC----CC------hHHHHHHHHHhccCCEEEEEc
Confidence 99887321 11 134667789999999998643
No 456
>PLN02702 L-idonate 5-dehydrogenase
Probab=78.47 E-value=15 Score=35.83 Aligned_cols=99 Identities=26% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEE--EEcchHHHHhh---CCCC
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRL--HIGDAVEFLRQ---VPRG 215 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v--~~~Da~~~l~~---~~~~ 215 (369)
...+||++|+| -|..+..+++..+...|++++.++...+.++++-. +..+.+ ...+..+.+.. ...+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGA-------DEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEEecCcccccHHHHHHHHhhhcCC
Confidence 46789999753 24444556776666678999999888888776421 111111 11233333221 1234
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+|+|+--. +. ...+..+.+.|+++|.++...
T Consensus 254 ~~d~vid~~----g~------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCV----GF------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECC----CC------HHHHHHHHHHHhcCCEEEEEc
Confidence 699887321 11 135778889999999988643
No 457
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=78.43 E-value=18 Score=34.96 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 142 SPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 142 ~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
...+||+.|+| .|..+..+++..+..+|++++.+++-.+.++++ .. +.-+.....+..+.+.....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA------DVVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------cEEecCCCccHHHHHHHHhCCCCcEE
Confidence 45789998654 234444566766666899999988888877553 21 00001011122222322222369988
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+ |... . ...+..+.+.|+++|.++..
T Consensus 248 i-d~~g---~------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 I-DFVN---N------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred E-ECCC---C------HHHHHHHHHHhhcCCeEEEE
Confidence 8 3221 1 13477888999999999864
No 458
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.31 E-value=20 Score=36.18 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=47.0
Q ss_pred EEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH--HHhhCCCCCccEE
Q 017607 145 TVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE--FLRQVPRGKYDAI 220 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~--~l~~~~~~~fDvI 220 (369)
+|+++|+ |.+++.+++. ....+|+++|.|++.++.+++. ..+.++.+|+.+ .++...-+.+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR----------LDVRTVVGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh----------cCEEEEEeCCCCHHHHHHcCCCcCCEE
Confidence 6889987 5677776653 1235799999999987766542 247788888753 3443323579988
Q ss_pred EEcCCC
Q 017607 221 IVDSSD 226 (369)
Q Consensus 221 i~D~~~ 226 (369)
++...+
T Consensus 70 i~~~~~ 75 (453)
T PRK09496 70 IAVTDS 75 (453)
T ss_pred EEecCC
Confidence 875543
No 459
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=78.28 E-value=18 Score=35.32 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fD 218 (369)
.+..+||+.|+| -|..+..+++..+...+++++-+++..+.+++. .. +.-+.....+..+.+.. .....+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345689988643 344445566766655599999988888777542 21 11111111222222222 2335699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+- ... . ....+.+.+.|+++|.++...
T Consensus 259 ~vld-~vg---~------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVE-ALG---K------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEE-eCC---C------HHHHHHHHHHHhcCCEEEEEc
Confidence 9983 211 1 124677889999999998653
No 460
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=78.23 E-value=35 Score=33.54 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=59.1
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+..+||+.|+| -|..+..+++..+..+|++++.+++-.+.+++.-. . -+.....+..+.+.+...+.+|+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-~-------~v~~~~~~~~~~i~~~~~~~~d~ 246 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-I-------PIDFSDGDPVEQILGLEPGGVDR 246 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-e-------EeccCcccHHHHHHHhhCCCCCE
Confidence 356789887654 24444456666655578889999988888776321 0 01111223333343322346898
Q ss_pred EEEcCCCCCC-CccccccHHHHHHHHHhccCCceEEe
Q 017607 220 IIVDSSDPVG-PAQELVEKPFFDTIAKALRPGGVLCN 255 (369)
Q Consensus 220 Ii~D~~~p~~-~~~~L~~~ef~~~~~~~LkpgGilv~ 255 (369)
|+--...+.. ..........+..+.+.|+++|.++.
T Consensus 247 v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 247 AVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred EEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 8742221100 00000112347788899999999864
No 461
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.74 E-value=23 Score=32.62 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=45.1
Q ss_pred CEEEEEeCcccHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH------HhhCC--
Q 017607 144 KTVLVVGGGDGGVLREISRH--DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQVP-- 213 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~--~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~------l~~~~-- 213 (369)
++||+.|++ |++++.++++ ....+|++++.+++-++...+.+. ..++.++..|..+. +....
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 468888755 5666666553 123589999998877665544332 24678888776532 22110
Q ss_pred -CCCccEEEEcCC
Q 017607 214 -RGKYDAIIVDSS 225 (369)
Q Consensus 214 -~~~fDvIi~D~~ 225 (369)
.++.|+||....
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 246899997653
No 462
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=77.68 E-value=9 Score=38.33 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECC
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHDSVELIDICEID 175 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid 175 (369)
...+||+||+|. |......+...++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 356899999884 3333333333467899999988
No 463
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.66 E-value=25 Score=31.95 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=44.7
Q ss_pred CEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH------HhhCCCC
Q 017607 144 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQVPRG 215 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~------l~~~~~~ 215 (369)
++||+.|+ +|+++..+++.. ...+|++++.++.-.+...+.+... ...+++++..|..+. ++.. ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 75 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSL-PA 75 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHH-hh
Confidence 46888884 466777665531 2357999999886554333332211 135788888886542 2222 23
Q ss_pred CccEEEEcC
Q 017607 216 KYDAIIVDS 224 (369)
Q Consensus 216 ~fDvIi~D~ 224 (369)
.+|++|...
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999654
No 464
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.63 E-value=58 Score=31.70 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=55.7
Q ss_pred CCEEEEEeCcccHH--HHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCccE
Q 017607 143 PKTVLVVGGGDGGV--LREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 143 p~~VLdIG~G~G~~--~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fDv 219 (369)
..+|.+||+|.=+. +..++...-..++..+|++++.++--..-+.... .+... .++.. +|..+ + ...|+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~-----~~adi 74 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-T-----ANSKV 74 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-h-----CCCCE
Confidence 45899999864322 2223334445689999998865443222222211 12222 25554 66443 2 24799
Q ss_pred EEEcCCCCCCCc---ccccc------HHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPA---QELVE------KPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~---~~L~~------~ef~~~~~~~LkpgGilv~~~ 257 (369)
||+....+..+. ..|+. +++.+.+.+. .|+|++++.+
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 998554443321 11111 2344455555 7899887654
No 465
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.57 E-value=10 Score=35.23 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECC-HHHHHHHHhhchhhcCCCCCCCEEEEEcc----hHHHHhhCC
Q 017607 141 PSPKTVLVVGGGDGGVLREISRHD--SVELIDICEID-KMVIDVSKKYFPELAVGFEDPRVRLHIGD----AVEFLRQVP 213 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid-~~vi~~ar~~~~~~~~~~~~~rv~v~~~D----a~~~l~~~~ 213 (369)
..++.||+.||..|+++.++++.+ ....|.++--. +.|.+++.++ ... --++.+...| ...+++..+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-gl~-----~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-GLK-----PYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-CCe-----eEEeccCChHHHHHHHHHHhhCC
Confidence 467899999999999999998742 33466665433 2344444332 110 0111111111 123344556
Q ss_pred CCCccEEEEcCCC
Q 017607 214 RGKYDAIIVDSSD 226 (369)
Q Consensus 214 ~~~fDvIi~D~~~ 226 (369)
+++.|+.+.++-.
T Consensus 79 ~Gkld~L~NNAG~ 91 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQ 91 (289)
T ss_pred CCceEEEEcCCCC
Confidence 7899999976543
No 466
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=77.47 E-value=31 Score=34.12 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=77.3
Q ss_pred EEEEEeCcccHHHHHHHhcCCC--------cEEEEEEC-----CHHHHHHHHhhchhhc--CCCC-CCCEEEEEcchHHH
Q 017607 145 TVLVVGGGDGGVLREISRHDSV--------ELIDICEI-----DKMVIDVSKKYFPELA--VGFE-DPRVRLHIGDAVEF 208 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k~~~~--------~~V~~VEi-----d~~vi~~ar~~~~~~~--~~~~-~~rv~v~~~Da~~~ 208 (369)
+|.+||+|.++.+....-.... .+|+.... ++...+...+...... .++. .++++. ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 4789999988887664221112 47888877 6677766554321110 0111 224554 4565555
Q ss_pred HhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccccchhhh--HHHHHHHHHHHHCCCCeeEEE
Q 017607 209 LRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTH--LIEDMISICRETFKGSVHYAW 286 (369)
Q Consensus 209 l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s~~~~~~--~~~~i~~~l~~~F~~~v~~~~ 286 (369)
++ .-|+||+-.++ .+-+++++.++..|+++-.++.-+-. + ... ....+-+.+++.|.. .+..
T Consensus 80 l~-----~ADiIIlAVPs-------~~i~~vl~~l~~~l~~~~~iVs~tKG-i-e~~~~~~~~~se~i~e~l~~--~~~~ 143 (342)
T TIGR03376 80 AK-----GADILVFVIPH-------QFLEGICKQLKGHVKPNARAISCIKG-L-EVSKDGVKLLSDIIEEELGI--PCGV 143 (342)
T ss_pred Hh-----cCCEEEEECCh-------HHHHHHHHHHHhhcCCCCEEEEEeCC-c-ccCCCcCccHHHHHHHHhCC--CeEE
Confidence 42 36888865432 12345778888888765445432211 1 222 334455556666642 4444
Q ss_pred EEEeeccCC-----cEEEEEeecC
Q 017607 287 ASVPTYPSG-----IIGFLICSTE 305 (369)
Q Consensus 287 ~~vP~~p~g-----~w~f~~ask~ 305 (369)
..=|++... .-..+++|++
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~ 167 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRD 167 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCC
Confidence 556776532 2355666664
No 467
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=77.37 E-value=22 Score=32.30 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCEEEEEeCcc-cH-HHHHHHhcCCCcEEEEEECC
Q 017607 142 SPKTVLVVGGGD-GG-VLREISRHDSVELIDICEID 175 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~-~~~~l~k~~~~~~V~~VEid 175 (369)
...+|+++|+|. |+ ++..+++. ++.+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 356899999984 22 33334444 57789999999
No 468
>PRK15076 alpha-galactosidase; Provisional
Probab=77.21 E-value=20 Score=36.64 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=42.4
Q ss_pred CEEEEEeCcc-cHHHH---HHH--hcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEE-EcchHHHHhhCCCCC
Q 017607 144 KTVLVVGGGD-GGVLR---EIS--RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH-IGDAVEFLRQVPRGK 216 (369)
Q Consensus 144 ~~VLdIG~G~-G~~~~---~l~--k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~-~~Da~~~l~~~~~~~ 216 (369)
.+|-+||+|+ |.... .++ ......+|+.+|+|++.++.+++.+....... ...+++. ..|..+-+. .
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~-~~~~~i~~ttD~~eal~-----d 75 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL-GASAKITATTDRREALQ-----G 75 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhC-----C
Confidence 3799999999 53322 232 22334589999999998886555543321111 2235555 556444332 2
Q ss_pred ccEEEEc
Q 017607 217 YDAIIVD 223 (369)
Q Consensus 217 fDvIi~D 223 (369)
-|+|+.-
T Consensus 76 ADfVv~t 82 (431)
T PRK15076 76 ADYVINA 82 (431)
T ss_pred CCEEeEe
Confidence 5777754
No 469
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=77.19 E-value=32 Score=32.74 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
....+||++|+| -|..+..+++..+ .+|+++..+++..+.+++. .. +.-+.....+ ..... .+.+|+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~---~~~~~-~~~~d~ 228 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GA------DEVVDSGAEL---DEQAA-AGGADV 228 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CC------cEEeccCCcc---hHHhc-cCCCCE
Confidence 456789999876 5555566677654 4799999999888877553 21 1001111111 11111 246998
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
++.-.. .......+.+.|+++|.++...
T Consensus 229 vi~~~~----------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVV----------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCC----------cHHHHHHHHHhcccCCEEEEEC
Confidence 873221 1235678889999999988643
No 470
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=77.18 E-value=11 Score=35.93 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=52.7
Q ss_pred EEEEEeCcc--cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEEEE
Q 017607 145 TVLVVGGGD--GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 145 ~VLdIG~G~--G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 222 (369)
+|.+||+|. |.++..+.+.. .+|+++|.+++.++.+++.- .+.....+. +.+ ...|+||+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g----------~~~~~~~~~-~~~-----~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERG----------LVDEASTDL-SLL-----KDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCC----------CcccccCCH-hHh-----cCCCEEEE
Confidence 688999884 44555555553 47999999999887765531 011111121 211 35899997
Q ss_pred cCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 223 DSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 223 D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
..+. . ...++++.+...++++-++ +.+.+
T Consensus 64 avp~--~-----~~~~~~~~l~~~l~~~~ii-~d~~S 92 (279)
T PRK07417 64 ALPI--G-----LLLPPSEQLIPALPPEAIV-TDVGS 92 (279)
T ss_pred cCCH--H-----HHHHHHHHHHHhCCCCcEE-EeCcc
Confidence 5532 1 1245677888888776544 44433
No 471
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.15 E-value=34 Score=32.76 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=40.7
Q ss_pred cCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHH-HHHHhcCCCcEEEEEECCHHHHHHHHhhc
Q 017607 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVL-REISRHDSVELIDICEIDKMVIDVSKKYF 186 (369)
Q Consensus 115 Dg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~-~~l~k~~~~~~V~~VEid~~vi~~ar~~~ 186 (369)
||.+.-...|-.-....+.... .....++||+||+|.-+-+ ...+...+..+|+.++.+++-.+...+.+
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 5655555666555555554311 1234679999998743322 22223345678999999987665444443
No 472
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.10 E-value=23 Score=34.82 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=64.4
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
.+...|.++|.|. |....+-+|..+..+|++|||+++-.+.|+++=..- +-+|+ .+. .-..+.+.+..++.+|.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe---~iNp~-d~~-~~i~evi~EmTdgGvDy 265 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE---FINPK-DLK-KPIQEVIIEMTDGGVDY 265 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce---ecChh-hcc-ccHHHHHHHHhcCCceE
Confidence 4567899999875 444455577777889999999999999999862211 11333 111 12455665554566776
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCC-ceEEec
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPG-GVLCNM 256 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~Lkpg-Gilv~~ 256 (369)
-+= -.+ ..+.++++....+.| |.-++.
T Consensus 266 sfE----c~G------~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 266 SFE----CIG------NVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred EEE----ecC------CHHHHHHHHHHhhcCCCeEEEE
Confidence 551 112 235677888888888 766543
No 473
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=77.04 E-value=11 Score=38.51 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=25.0
Q ss_pred CCEEEEEeCcccHHHHHHHhc---CCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGDGGVLREISRH---DSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~---~~~~~V~~VEid~ 176 (369)
..+||+||+| +++.+++|. .++.+++.+|-+.
T Consensus 20 ~s~VlliG~g--glGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 20 SAHVCLLNAT--ATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hCeEEEEcCc--HHHHHHHHHHHHcCCCeEEEECCCc
Confidence 4589999887 477777774 6788999998663
No 474
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.99 E-value=33 Score=31.49 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=47.0
Q ss_pred CCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH--H----hhC--
Q 017607 143 PKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF--L----RQV-- 212 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~--l----~~~-- 212 (369)
.++||+.| |+|.++..++++. ...+|++++-++.-.+..++.+... ..++.++..|..+. + ...
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46788887 5667777766541 2347999999887666555444322 34677777776431 1 110
Q ss_pred CCCCccEEEEcCC
Q 017607 213 PRGKYDAIIVDSS 225 (369)
Q Consensus 213 ~~~~fDvIi~D~~ 225 (369)
..+..|+||....
T Consensus 86 ~~~~id~vi~~ag 98 (259)
T PRK08213 86 RFGHVDILVNNAG 98 (259)
T ss_pred HhCCCCEEEECCC
Confidence 1146899997653
No 475
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=76.99 E-value=11 Score=41.18 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCEEEEEeCcccH--HHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhc-----CC-CCC-------CCEEEEEcchHH
Q 017607 143 PKTVLVVGGGDGG--VLREISRHDSVELIDICEIDKMVIDVSKKYFPELA-----VG-FED-------PRVRLHIGDAVE 207 (369)
Q Consensus 143 p~~VLdIG~G~G~--~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~-----~~-~~~-------~rv~v~~~Da~~ 207 (369)
.++|-+||+|+=+ ++..++.+ .-+|+.+|++++.++.++++....- .+ +.. .+++.. .|. +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H
Confidence 4589999999544 44445555 3689999999999988776543210 00 100 123322 121 1
Q ss_pred HHhhCCCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecccc
Q 017607 208 FLRQVPRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAES 259 (369)
Q Consensus 208 ~l~~~~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~~s 259 (369)
.. ...|+||=..+... -..+++|+++-+.++|+.+|++++.+
T Consensus 389 ---~~--~~aDlViEav~E~l-----~~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 ---GF--DNVDIVVEAVVENP-----KVKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred ---Hh--cCCCEEEEcCcccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 35788884332211 23578999999999999999988754
No 476
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=76.93 E-value=7.5 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=21.2
Q ss_pred EEEEEeCcccHHHHHHHh---cCCCcEEEEEECCHH
Q 017607 145 TVLVVGGGDGGVLREISR---HDSVELIDICEIDKM 177 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~~ 177 (369)
+||+||+| +++-++++ ..++.+++.+|.|--
T Consensus 1 kVlVVGaG--GlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAG--GLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 58999987 34444433 356889999997743
No 477
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=76.73 E-value=25 Score=33.92 Aligned_cols=104 Identities=11% Similarity=0.275 Sum_probs=54.5
Q ss_pred EEEEeCcc-cHHHHHHH-hcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE-cchHHHHhhCCCCCccEEEE
Q 017607 146 VLVVGGGD-GGVLREIS-RHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI-GDAVEFLRQVPRGKYDAIIV 222 (369)
Q Consensus 146 VLdIG~G~-G~~~~~l~-k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~~~~~~fDvIi~ 222 (369)
|.+||+|. |......+ ...-..+++.+|++++.++--..-+......+ ...++.. +| .+ .. ...|+||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~--~~~~i~~~~~-~~---~l--~~aDiVIi 72 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL--ATGTIVRGGD-YA---DA--ADADIVVI 72 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc--CCCeEEECCC-HH---Hh--CCCCEEEE
Confidence 45789886 44444333 33334579999999887665444343332211 2344443 44 22 22 35899998
Q ss_pred cCCCCCCCcc---cc--ccHHHHHHHHHh---ccCCceEEecc
Q 017607 223 DSSDPVGPAQ---EL--VEKPFFDTIAKA---LRPGGVLCNMA 257 (369)
Q Consensus 223 D~~~p~~~~~---~L--~~~ef~~~~~~~---LkpgGilv~~~ 257 (369)
....|..+.. .+ .+...++.+.+. -.|+|++++-+
T Consensus 73 tag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 73 TAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 7655543321 11 122333333333 33899887654
No 478
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.67 E-value=42 Score=32.93 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCCCEEEEEeCcccHHHHH--HHhcCCCcEEEEEECCHHHHHHHHhhch---hhcCCCC-CCCEEEEEcchHHHHhhCCC
Q 017607 141 PSPKTVLVVGGGDGGVLRE--ISRHDSVELIDICEIDKMVIDVSKKYFP---ELAVGFE-DPRVRLHIGDAVEFLRQVPR 214 (369)
Q Consensus 141 ~~p~~VLdIG~G~G~~~~~--l~k~~~~~~V~~VEid~~vi~~ar~~~~---~~~~~~~-~~rv~v~~~Da~~~l~~~~~ 214 (369)
+...+|.+||+|..+.+.. +++.. .++.+..+++.++..++.-. ....+.. ..++.+ ..|..+.+
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----- 75 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----- 75 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH-----
Confidence 3456899999997766554 33332 47777799998887765321 1110110 112332 34433322
Q ss_pred CCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEE-ecccccchhhhHHHHHHHHHHHHCCCCeeEEEEEEeecc
Q 017607 215 GKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC-NMAESMWLHTHLIEDMISICRETFKGSVHYAWASVPTYP 293 (369)
Q Consensus 215 ~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv-~~~~s~~~~~~~~~~i~~~l~~~F~~~v~~~~~~vP~~p 293 (369)
+..|+||+-.+. .+.++.++.+...++++..++ ++-+ +. ......+.+.+++.++. ........|.+.
T Consensus 76 ~~aDlVilavps-------~~~~~vl~~i~~~l~~~~~vIsl~kG--i~-~~t~~~~se~i~~~l~~-~~~~~l~GP~~a 144 (341)
T PRK12439 76 NCADVVVMGVPS-------HGFRGVLTELAKELRPWVPVVSLVKG--LE-QGTNMRMSQIIEEVLPG-HPAGILAGPNIA 144 (341)
T ss_pred hcCCEEEEEeCH-------HHHHHHHHHHHhhcCCCCEEEEEEeC--Cc-CCCCCcHHHHHHHHcCC-CCeEEEECCCHH
Confidence 357988865431 134568888988898887554 3222 11 11122333445566653 234445667776
Q ss_pred C----CcE-EEEEeec
Q 017607 294 S----GII-GFLICST 304 (369)
Q Consensus 294 ~----g~w-~f~~ask 304 (369)
. |.. ..++++.
T Consensus 145 ~ev~~g~~t~~via~~ 160 (341)
T PRK12439 145 REVAEGYAAAAVLAMP 160 (341)
T ss_pred HHHHcCCCeEEEEEeC
Confidence 4 332 3455554
No 479
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=76.67 E-value=12 Score=38.14 Aligned_cols=43 Identities=23% Similarity=0.553 Sum_probs=30.7
Q ss_pred EEEEEeCcccHHHHHHHh----c---CCCcEEEEEECCHHHHHH----HHhhchh
Q 017607 145 TVLVVGGGDGGVLREISR----H---DSVELIDICEIDKMVIDV----SKKYFPE 188 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l~k----~---~~~~~V~~VEid~~vi~~----ar~~~~~ 188 (369)
+|.+||+|+. .+..+.+ . .+..+|+.+|||++-++. +++.+..
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~ 55 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEE 55 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 6889999996 6666543 1 356899999999977765 4444443
No 480
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.23 E-value=15 Score=38.62 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=55.6
Q ss_pred CCCEEEEEeCcccHHHHHHHhc---CCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHH--hh-CCCC
Q 017607 142 SPKTVLVVGGGDGGVLREISRH---DSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFL--RQ-VPRG 215 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~---~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l--~~-~~~~ 215 (369)
..++||+=| |+|+++.++.+. ...+++...|.|+--+..-++.+... +...++.++.+|.++.- .. ..+-
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 356787666 558888887653 34579999999999888777666542 22568999999987642 11 2234
Q ss_pred CccEEEEcCC
Q 017607 216 KYDAIIVDSS 225 (369)
Q Consensus 216 ~fDvIi~D~~ 225 (369)
+.|+|+.-+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 7999997544
No 481
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=76.13 E-value=24 Score=33.89 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=60.9
Q ss_pred CCCCEEEEEeCc--ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCc
Q 017607 141 PSPKTVLVVGGG--DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKY 217 (369)
Q Consensus 141 ~~p~~VLdIG~G--~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~f 217 (369)
....+||+.|+| .|..+..+++..+ .+|+++.-+++-.+.+++ +.. +.-+.....|..+.+... ..+.+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMG-LRVIAIDVGDEKLELAKE-LGA------DAFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHH-cCC------cEEEcCCCccHHHHHHHHhcCCCC
Confidence 346799999875 5666677788765 489999999887776644 221 111111111332323322 23569
Q ss_pred cEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 218 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 218 DvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+|+.+... .+....+.++|+++|.++...
T Consensus 236 d~vl~~~~~----------~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 236 HAVVVTAVS----------AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred CEEEEcCCc----------hHHHHHHHHHhhcCCEEEEec
Confidence 999843321 234677889999999999654
No 482
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.00 E-value=45 Score=30.81 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=42.1
Q ss_pred CCCEEEEEeCcc-cHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchH------HHHhhC
Q 017607 142 SPKTVLVVGGGD-GGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAV------EFLRQV 212 (369)
Q Consensus 142 ~p~~VLdIG~G~-G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~------~~l~~~ 212 (369)
..+.||+.|+++ +++++++++.. ...+|..++.++...+..++..... ..+.++..|.. ++++..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL------DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh------ccceEEecCcCCHHHHHHHHHHH
Confidence 357899999887 36777766542 2357888888865432222221111 12334555542 222221
Q ss_pred --CCCCccEEEEcC
Q 017607 213 --PRGKYDAIIVDS 224 (369)
Q Consensus 213 --~~~~fDvIi~D~ 224 (369)
.-++.|++|.++
T Consensus 83 ~~~~g~ld~lv~nA 96 (258)
T PRK07533 83 AEEWGRLDFLLHSI 96 (258)
T ss_pred HHHcCCCCEEEEcC
Confidence 125789999765
No 483
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=75.98 E-value=5.5 Score=38.58 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=49.2
Q ss_pred CCCEEEEEeCcccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC----CCCCc
Q 017607 142 SPKTVLVVGGGDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV----PRGKY 217 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~----~~~~f 217 (369)
...+|..||.|...++..+++.+ .+|++|||++.-+.+-+-.+... ..+. -++|...|+.-. ...-|
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lklaA~------R~Lp-~h~dl~r~~a~a~t~~n~~~y 133 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLAAF------RHLP-SHEDLVRFFALAGTRRNSQAY 133 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHHHH------hhcc-cchhhHHHhhhhcccccchhh
Confidence 46689999999887888888875 68999999999998766554332 0111 123666665321 12358
Q ss_pred cEEEEc
Q 017607 218 DAIIVD 223 (369)
Q Consensus 218 DvIi~D 223 (369)
|+-+..
T Consensus 134 D~flae 139 (414)
T COG5379 134 DRFLAE 139 (414)
T ss_pred hccccc
Confidence 887743
No 484
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=75.78 E-value=5.7 Score=40.40 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=43.1
Q ss_pred EEEEEeCcccHHHHHH----Hh--cCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEE-EcchHHHHhhCCCCCc
Q 017607 145 TVLVVGGGDGGVLREI----SR--HDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLH-IGDAVEFLRQVPRGKY 217 (369)
Q Consensus 145 ~VLdIG~G~G~~~~~l----~k--~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~-~~Da~~~l~~~~~~~f 217 (369)
+|.+||+|+.+.+..+ +. .....+|+.+|+|++.++...+......... ....++. ..|..+-+ ...
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal-----~~A 75 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREAL-----DGA 75 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHh-----cCC
Confidence 6889999995444332 22 2234589999999998887665443221111 1224443 45644443 246
Q ss_pred cEEEEcCC
Q 017607 218 DAIIVDSS 225 (369)
Q Consensus 218 DvIi~D~~ 225 (369)
|+||.-..
T Consensus 76 D~Vi~ai~ 83 (423)
T cd05297 76 DFVINTIQ 83 (423)
T ss_pred CEEEEeeE
Confidence 88886543
No 485
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=75.64 E-value=50 Score=31.68 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=39.1
Q ss_pred cCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHH-HhcCCCcEEEEEECCHHHHHHHHh
Q 017607 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREI-SRHDSVELIDICEIDKMVIDVSKK 184 (369)
Q Consensus 115 Dg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l-~k~~~~~~V~~VEid~~vi~~ar~ 184 (369)
||.+.-...|-.-+...|.... ...+.++||+||+|.-+-+... +...+..+|+.++-+++-.+...+
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence 5665555666555555554311 1134678999998643333222 223456789999998765444333
No 486
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=75.34 E-value=15 Score=35.24 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=51.8
Q ss_pred CCCCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCH---HHHHHHHhhchhhcCCCCCCCEEEEEc---chHHHHhhC
Q 017607 141 PSPKTVLVVGG--GDGGVLREISRHDSVELIDICEIDK---MVIDVSKKYFPELAVGFEDPRVRLHIG---DAVEFLRQV 212 (369)
Q Consensus 141 ~~p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~---~vi~~ar~~~~~~~~~~~~~rv~v~~~---Da~~~l~~~ 212 (369)
.+.++||+.|+ +-|..+..+++.....-+..++-++ +-.+.+++ +.. +.-+..... +..+.+...
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~-~g~------~~~~~~~~~~~~~~~~~i~~~ 217 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKA-LGA------DHVLTEEELRSLLATELLKSA 217 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHh-cCC------CEEEeCcccccccHHHHHHHH
Confidence 45679999974 5666667778876554444455432 33444443 211 111111111 333434332
Q ss_pred CCCCccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 213 PRGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 213 ~~~~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
..+.+|+|+ |... . . ....+.+.|+++|.++..
T Consensus 218 ~~~~~d~vl-d~~g---~------~-~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 218 PGGRPKLAL-NCVG---G------K-SATELARLLSPGGTMVTY 250 (341)
T ss_pred cCCCceEEE-ECcC---c------H-hHHHHHHHhCCCCEEEEE
Confidence 222699888 3321 1 1 233567889999998854
No 487
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.24 E-value=22 Score=34.68 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhC-CCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQV-PRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-~~~~fD 218 (369)
.+..+||+.|+| -|..+..+++..+..+|++++-++.-.+.+++ +.. +.-+.....+....+... +.+.+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~------~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA------THTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC------eEEeCCCCccHHHHHHHHcCCCCCC
Confidence 356799999754 34455666777655569999988888777754 221 111111112333333222 235699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+|+--... ......+.+.|+++|.++..
T Consensus 254 ~vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 254 YAFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 88732211 13567888999999998864
No 488
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=75.23 E-value=33 Score=31.14 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=45.6
Q ss_pred CEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH---------HhhC
Q 017607 144 KTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF---------LRQV 212 (369)
Q Consensus 144 ~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~---------l~~~ 212 (369)
++||+.| |+|.+++.+++.. ...+|++++.++...+.....+... ..++.++..|..+. +.+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-----GGSVIYLVADVTKEDEIADMIAAAAAE 75 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 4678777 5577777776542 2347999999887665544433221 24677887776432 1111
Q ss_pred CCCCccEEEEcCC
Q 017607 213 PRGKYDAIIVDSS 225 (369)
Q Consensus 213 ~~~~fDvIi~D~~ 225 (369)
-...|+||....
T Consensus 76 -~~~~d~vi~~a~ 87 (255)
T TIGR01963 76 -FGGLDILVNNAG 87 (255)
T ss_pred -cCCCCEEEECCC
Confidence 245899997653
No 489
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=75.21 E-value=39 Score=32.17 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 143 PKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 143 p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+||+.|+ +.|..+..+++.....+|+++.-+++-.+.+++ +.. +.-+.. ..+..+.+.....+.+|+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~-~g~------~~~~~~-~~~~~~~i~~~~~~~vd~v 220 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE-LGA------HHVIDH-SKPLKAQLEKLGLEAVSYV 220 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH-cCC------CEEEEC-CCCHHHHHHHhcCCCCCEE
Confidence 578999984 566666667776423578888777777776654 221 111110 1233333333333469988
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEec
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNM 256 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~ 256 (369)
+ |... .......+.+.|+++|.++..
T Consensus 221 l-~~~~---------~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 221 F-SLTH---------TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred E-EcCC---------cHHHHHHHHHHhccCCEEEEE
Confidence 8 3311 123577888999999999853
No 490
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.18 E-value=46 Score=30.82 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHH------HHhhC-
Q 017607 142 SPKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVE------FLRQV- 212 (369)
Q Consensus 142 ~p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~------~l~~~- 212 (369)
..++||+.|+ +|+++..++++. ...+|++++.+++-++...+.+... ..++.++..|..+ +++..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 3567888875 556666665431 2357999999887665444433322 2356667777532 22221
Q ss_pred -CCCCccEEEEcC
Q 017607 213 -PRGKYDAIIVDS 224 (369)
Q Consensus 213 -~~~~fDvIi~D~ 224 (369)
..+..|++|...
T Consensus 82 ~~~~~iD~vi~~a 94 (264)
T PRK07576 82 DEFGPIDVLVSGA 94 (264)
T ss_pred HHcCCCCEEEECC
Confidence 124689999754
No 491
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.11 E-value=13 Score=33.63 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCEEEEEeCcccHHHHHHHh---cCCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGDGGVLREISR---HDSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k---~~~~~~V~~VEid~ 176 (369)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 19 ~s~VlviG~gg--lGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGA--LGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999984 3334333 34688999999773
No 492
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=75.10 E-value=8.1 Score=43.73 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=24.3
Q ss_pred CCEEEEEeCcccHHHHHHHhc---CCCcEEEEEECCH
Q 017607 143 PKTVLVVGGGDGGVLREISRH---DSVELIDICEIDK 176 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~---~~~~~V~~VEid~ 176 (369)
..+||++|+| +++.++++. .++.+++.+|-|.
T Consensus 24 ~s~VLIiG~g--GLG~EiaKnL~laGVg~iti~D~d~ 58 (1008)
T TIGR01408 24 KSNVLISGMG--GLGLEIAKNLVLAGVKSVTLHDTEK 58 (1008)
T ss_pred hCcEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCe
Confidence 4689999986 466666663 5688999999764
No 493
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=74.99 E-value=43 Score=33.12 Aligned_cols=101 Identities=13% Similarity=0.106 Sum_probs=57.2
Q ss_pred CCCCEEEEEeCcc-cHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEE---cchHHHHhh-CCCC
Q 017607 141 PSPKTVLVVGGGD-GGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHI---GDAVEFLRQ-VPRG 215 (369)
Q Consensus 141 ~~p~~VLdIG~G~-G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~---~Da~~~l~~-~~~~ 215 (369)
....+||+.|+|. |..+..+++..+..+|++++.+++-.++++++ .. +.-+.... .+..+.+.. ....
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM-GA------DYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEEcccccccccHHHHHHHhcCCC
Confidence 3567899986542 22233456666555799999988877777764 21 11111111 122222322 2234
Q ss_pred CccEEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 216 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 216 ~fDvIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
.+|+|+ |... . ....+..+.+.|+++|.++..+
T Consensus 275 gvDvvl-d~~g---~-----~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 275 GADIQV-EAAG---A-----PPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCEEE-ECCC---C-----cHHHHHHHHHHHHcCCEEEEEC
Confidence 699887 3321 1 1235677888999999998643
No 494
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=74.95 E-value=29 Score=33.31 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccE
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDA 219 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDv 219 (369)
...++||+.|+| -|..+..+++..+ .+|++++.+++-.+.+++. .. +.-+.....|..+.+... ..+|+
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~--~~~d~ 231 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL--GGAKL 231 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc--CCCCE
Confidence 345789999853 2333444667654 4799999998888887653 21 111122223333334333 35898
Q ss_pred EEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 220 IIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 220 Ii~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
|+- .. +. ...+..+.+.|+++|.++...
T Consensus 232 vi~-~~---g~------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILA-TA---PN------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEE-CC---Cc------hHHHHHHHHHcccCCEEEEEe
Confidence 883 21 11 135677888999999998654
No 495
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.93 E-value=42 Score=30.51 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCEEEEEeCcccHHHHHHHhcC--CCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHH------HhhC--
Q 017607 143 PKTVLVVGGGDGGVLREISRHD--SVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEF------LRQV-- 212 (369)
Q Consensus 143 p~~VLdIG~G~G~~~~~l~k~~--~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~------l~~~-- 212 (369)
.++||+.|+ +|.++.+++++. ...+|.+++.++.-.+...+.+... ..++.++..|..+. +...
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA-----GGKAIGVAMDVTDEEAINAGIDYAVE 77 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357887775 567787777642 2357999999887665544433322 35678888875421 1111
Q ss_pred CCCCccEEEEcCC
Q 017607 213 PRGKYDAIIVDSS 225 (369)
Q Consensus 213 ~~~~fDvIi~D~~ 225 (369)
..+..|+||....
T Consensus 78 ~~~~~d~vi~~a~ 90 (258)
T PRK12429 78 TFGGVDILVNNAG 90 (258)
T ss_pred HcCCCCEEEECCC
Confidence 1136899997654
No 496
>PRK14851 hypothetical protein; Provisional
Probab=74.85 E-value=7 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHH
Q 017607 143 PKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKM 177 (369)
Q Consensus 143 p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~ 177 (369)
..+|+++||| -|+...+.+-..++.+++.+|-|.-
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~v 78 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQF 78 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEe
Confidence 5689999998 5665555444445789999987743
No 497
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=74.78 E-value=36 Score=32.79 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred cCeEeecccchhHHHHHHHhccccCCCCCCEEEEEeCcccHHHHHH-HhcCCCcEEEEEECCHHHHHHHHhhchh
Q 017607 115 DGIVQLTEKDECAYQEMIAHLPLCSIPSPKTVLVVGGGDGGVLREI-SRHDSVELIDICEIDKMVIDVSKKYFPE 188 (369)
Q Consensus 115 Dg~~q~~~~de~~Y~e~l~~~~l~~~~~p~~VLdIG~G~G~~~~~l-~k~~~~~~V~~VEid~~vi~~ar~~~~~ 188 (369)
||.+.-...|-.-+-..|...........++||++|.|.-+-+... +......+|+++.-+.+-.+...+.++.
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~ 172 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGE 172 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 3787777888777777777532211224578999998744333222 2233467899999988777666666654
No 498
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.74 E-value=14 Score=28.52 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=50.8
Q ss_pred EEEEEeCcccHHHH--HHHhcC-CCcEEEEE-ECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 145 TVLVVGGGDGGVLR--EISRHD-SVELIDIC-EIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 145 ~VLdIG~G~G~~~~--~l~k~~-~~~~V~~V-Eid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
+|..||+|.-+.+. .++++. ...+|..+ +.+++-++..++.++ +.+...|..+.++ ..|+|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~advv 65 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ-----EADVV 65 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH-----HTSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc-----cCCEE
Confidence 57788877544332 233442 23678855 999998887766543 3344345555553 47899
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEE
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLC 254 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv 254 (369)
|+-... . .-.++++.+ ..+.++.+++
T Consensus 66 ilav~p-----~--~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 66 ILAVKP-----Q--QLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EE-S-G-----G--GHHHHHHHH-HHHHTTSEEE
T ss_pred EEEECH-----H--HHHHHHHHH-hhccCCCEEE
Confidence 975431 1 124567777 6677777666
No 499
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.68 E-value=31 Score=33.17 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=57.7
Q ss_pred CCCCEEEEEeCc-ccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhh-CCCCCcc
Q 017607 141 PSPKTVLVVGGG-DGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQ-VPRGKYD 218 (369)
Q Consensus 141 ~~p~~VLdIG~G-~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-~~~~~fD 218 (369)
....+||+.|+| -|..+..+++..+...+++++.++.-.+.++++ .. +.-+.....+..+.+.. .....+|
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-ga------~~v~~~~~~~~~~~i~~~~~~~~~d 239 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREF-GA------TDIVAERGEEAVARVRELTGGVGAD 239 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CC------ceEecCCcccHHHHHHHhcCCCCCC
Confidence 456788886643 233334456776666799999888777777653 21 11111111222232322 2234699
Q ss_pred EEEEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 219 AIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 219 vIi~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+|+- .. + ....+..+.+.|+++|.++...
T Consensus 240 ~il~-~~---g------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 240 AVLE-CV---G------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred EEEE-CC---C------CHHHHHHHHHhhccCCEEEEec
Confidence 8883 22 1 1235788899999999998654
No 500
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=74.68 E-value=26 Score=33.32 Aligned_cols=97 Identities=23% Similarity=0.350 Sum_probs=59.9
Q ss_pred CCEEEEEeC--cccHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhchhhcCCCCCCCEEEEEcchHHHHhhCCCCCccEE
Q 017607 143 PKTVLVVGG--GDGGVLREISRHDSVELIDICEIDKMVIDVSKKYFPELAVGFEDPRVRLHIGDAVEFLRQVPRGKYDAI 220 (369)
Q Consensus 143 p~~VLdIG~--G~G~~~~~l~k~~~~~~V~~VEid~~vi~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvI 220 (369)
..+||++|+ +-|..+..+++..+..+|++++.+++-.+.+++ +.. +.-+... .+..+.+.....+.+|+|
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~------~~~~~~~-~~~~~~i~~~~~~~~d~v 221 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE-LGA------DHVINHH-QDLAEQLEALGIEPVDYI 221 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh-cCC------cEEEeCC-ccHHHHHHhhCCCCCCEE
Confidence 679999984 556666677777653689999998888877754 221 1011111 133333333333469988
Q ss_pred EEcCCCCCCCccccccHHHHHHHHHhccCCceEEecc
Q 017607 221 IVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMA 257 (369)
Q Consensus 221 i~D~~~p~~~~~~L~~~ef~~~~~~~LkpgGilv~~~ 257 (369)
+- ... .......+.++|+++|.++..+
T Consensus 222 l~-~~~---------~~~~~~~~~~~l~~~g~~v~~g 248 (336)
T cd08252 222 FC-LTD---------TDQHWDAMAELIAPQGHICLIV 248 (336)
T ss_pred EE-ccC---------cHHHHHHHHHHhcCCCEEEEec
Confidence 73 221 1235778899999999998643
Done!