BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017608
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 114/292 (39%), Gaps = 43/292 (14%)
Query: 2 VPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSF 61
+P E+ LS K ++L +E+F M +P R +L++ F ++V +++
Sbjct: 148 MPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEI 207
Query: 62 SMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGXXXXXXXXXXXXXXXXGTDGKT 121
+ AC+ELR S F LLE L GN MN G+ G D K
Sbjct: 208 VSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKM 267
Query: 122 TLLHFVVQ--EIIRSEGIRVADSIMGKINQRNKTKTVEEREEDYRRMGLDLVSGLSTELY 179
TLLHF+ + E E ++ D EL
Sbjct: 268 TLLHFLAELCENDHPEVLKFPD-----------------------------------ELA 292
Query: 180 NVKKTATIDLDVLASSVSNLKDGMAKLQ---HLLDLCIDEKSGNFVHSMNAFVKYAERNI 236
+V+K + + + L S+ +K +A ++ DEK FV M +FVK A+
Sbjct: 293 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD-KFVEKMTSFVKDAQEQY 351
Query: 237 KELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKE 288
+L+ S + +E+ +YF D K F+ + +F M KE
Sbjct: 352 NKLRMMHSNMETLYKELGDYFVFDPKKLSVE--EFFMDLHNFRNMFLQAVKE 401
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 43/292 (14%)
Query: 2 VPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSF 61
+P E+ LS K ++L +E+F M +P R +L++ F ++V +++
Sbjct: 129 MPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEI 188
Query: 62 SMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGXXXXXXXXXXXXXXXXGTDGKT 121
+ AC+ELR S F LLE L GN MN G+ G D K
Sbjct: 189 VSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKM 248
Query: 122 TLLHFVVQ--EIIRSEGIRVADSIMGKINQRNKTKTVEEREEDYRRMGLDLVSGLSTELY 179
TLLHF+ + E E ++ D EL
Sbjct: 249 TLLHFLAELCENDHPEVLKFPD-----------------------------------ELA 273
Query: 180 NVKKTATIDLDVLASSVSNLKDGMAKLQHLLD---LCIDEKSGNFVHSMNAFVKYAERNI 236
+V+K + + + L S+ +K +A ++ + DEK FV M +FVK A+
Sbjct: 274 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKD-KFVEKMTSFVKDAQEQY 332
Query: 237 KELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKE 288
+L+ S + +E+ +YF D K F+ + +F M KE
Sbjct: 333 NKLRMMHSNMETLYKELGDYFVFDPKKLSVE--EFFMDLHNFRNMFLQAVKE 382
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 43/292 (14%)
Query: 2 VPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSF 61
+P E+ LS K ++L +E+F M +P R +L++ F ++V +++
Sbjct: 58 MPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEI 117
Query: 62 SMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGXXXXXXXXXXXXXXXXGTDGKT 121
+ AC+ELR S F LLE L GN MN G+ G D K
Sbjct: 118 VSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKM 177
Query: 122 TLLHFVVQ--EIIRSEGIRVADSIMGKINQRNKTKTVEEREEDYRRMGLDLVSGLSTELY 179
TLLHF+ + E E ++ D EL
Sbjct: 178 TLLHFLAELCENDHPEVLKFPD-----------------------------------ELA 202
Query: 180 NVKKTATIDLDVLASSVSNLKDGMAKLQHLLD---LCIDEKSGNFVHSMNAFVKYAERNI 236
+V+K + + + L S+ +K +A ++ + DEK FV M +FVK A+
Sbjct: 203 HVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEK-DKFVEKMTSFVKDAQEQY 261
Query: 237 KELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKE 288
+L+ S + +E+ +YF D K F+ + +F M KE
Sbjct: 262 NKLRMMHSNMETLYKELGDYFVFDPKKLSVE--EFFMDLHNFRNMFLQAVKE 311
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
Query: 2 VPTKEEETKLSSY---KGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLR 58
+PT+ E L Y + + EL + ++F+ + QR M + F+D + L
Sbjct: 133 LPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLT 192
Query: 59 NSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGXXXXXXXXXXXXXXXXGTD 118
+ + A ++SS+ ++LE +L GN MN + RG TD
Sbjct: 193 PQLNAIIAASASVKSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKSTD 251
Query: 119 GKTTLLHFVV 128
K TLLHF+
Sbjct: 252 RKMTLLHFIA 261
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 189 LDVLASSVSNLKDGMAKLQHLLDLCIDEKSG--NFVHSMNAFVKYAERNIKELQEDESRV 246
LD ++S +KDG+A ++++ +C SG ++ S+ F+ ER I +++ E V
Sbjct: 154 LDNKEQAISAIKDGIAIGKNVI-VCGGTGSGKTTYIKSIXEFIPKEER-IISIEDTEEIV 211
Query: 247 FLHVREITEYFHG 259
F H + T+ F G
Sbjct: 212 FKHHKNYTQLFFG 224
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 189 LDVLASSVSNLKDGMAKLQHLLDLCIDEKSG--NFVHSMNAFVKYAERNIKELQEDESRV 246
LD ++S +KDG+A ++++ +C SG ++ S+ F+ ER I +++ E V
Sbjct: 154 LDNKEQAISAIKDGIAIGKNVI-VCGGTGSGKTTYIKSIMEFIPKEER-IISIEDTEEIV 211
Query: 247 FLHVREITEYFHG 259
F H + T+ F G
Sbjct: 212 FKHHKNYTQLFFG 224
>pdb|1QI9|A Chain A, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
pdb|1QI9|B Chain B, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
Length = 556
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 13 SYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELR 72
+++G IN+L F + MLGI + F + +L ET +H + + EE+ E R
Sbjct: 464 TFEGEINKLAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLH-QELMTFAEESTFEFR 522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,450,097
Number of Sequences: 62578
Number of extensions: 355980
Number of successful extensions: 927
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 16
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)