Query 017608
Match_columns 368
No_of_seqs 161 out of 936
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:05:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00498 FH2 Formin Homology 100.0 2.2E-53 4.7E-58 430.3 28.9 258 1-294 122-382 (432)
2 PF02181 FH2: Formin Homology 100.0 2.7E-51 5.9E-56 407.2 27.9 248 1-283 121-370 (370)
3 KOG1924 RhoA GTPase effector D 100.0 2.9E-44 6.3E-49 365.7 25.2 262 2-298 742-1005(1102)
4 KOG1923 Rac1 GTPase effector F 100.0 6.4E-36 1.4E-40 305.9 19.3 252 1-294 484-738 (830)
5 KOG1922 Rho GTPase effector BN 100.0 7E-33 1.5E-37 301.2 25.1 276 1-294 511-791 (833)
6 KOG1925 Rac1 GTPase effector F 100.0 1.2E-28 2.7E-33 242.4 26.1 298 1-343 395-701 (817)
7 smart00498 FH2 Formin Homology 95.9 0.063 1.4E-06 54.9 10.8 115 175-289 312-431 (432)
8 PRK10132 hypothetical protein; 66.2 41 0.00088 27.8 7.8 43 219-261 44-86 (108)
9 PF07544 Med9: RNA polymerase 61.0 56 0.0012 25.5 7.4 28 185-212 19-46 (83)
10 PF12325 TMF_TATA_bd: TATA ele 60.6 61 0.0013 27.3 8.0 32 229-260 63-94 (120)
11 PRK10404 hypothetical protein; 60.5 63 0.0014 26.3 7.9 43 219-261 37-80 (101)
12 PF04108 APG17: Autophagy prot 58.9 2.1E+02 0.0046 29.1 13.8 57 268-324 334-397 (412)
13 PF06013 WXG100: Proteins of 1 50.7 98 0.0021 22.7 10.7 66 223-294 7-72 (86)
14 COG4575 ElaB Uncharacterized c 49.6 1.3E+02 0.0029 24.7 7.9 72 190-261 11-83 (104)
15 COG1579 Zn-ribbon protein, pos 48.7 2.4E+02 0.0052 26.7 11.1 72 186-257 51-126 (239)
16 PF10805 DUF2730: Protein of u 46.9 1.4E+02 0.003 24.4 7.9 69 184-255 32-100 (106)
17 PF10458 Val_tRNA-synt_C: Valy 43.2 1.3E+02 0.0029 22.1 6.8 61 192-252 2-64 (66)
18 PF05957 DUF883: Bacterial pro 38.9 1.5E+02 0.0032 23.4 6.8 70 192-261 3-73 (94)
19 KOG4302 Microtubule-associated 37.7 3.1E+02 0.0067 29.9 10.7 76 220-296 47-122 (660)
20 PF06120 Phage_HK97_TLTM: Tail 37.7 3.6E+02 0.0077 26.5 10.4 23 188-210 82-104 (301)
21 KOG0963 Transcription factor/C 37.2 5.6E+02 0.012 27.7 12.3 70 220-294 59-128 (629)
22 PF04420 CHD5: CHD5-like prote 36.9 2.4E+02 0.0051 24.8 8.4 66 190-257 36-103 (161)
23 KOG0994 Extracellular matrix g 35.8 3.2E+02 0.0069 31.9 10.6 90 185-285 1223-1312(1758)
24 PRK11637 AmiB activator; Provi 33.2 5.3E+02 0.012 26.1 13.2 35 223-257 99-133 (428)
25 PF08336 P4Ha_N: Prolyl 4-Hydr 32.8 2.5E+02 0.0054 23.6 7.7 69 220-292 15-83 (134)
26 cd07663 BAR_SNX5 The Bin/Amphi 32.6 4.2E+02 0.009 24.7 10.2 74 214-287 17-97 (218)
27 KOG1962 B-cell receptor-associ 32.4 4.2E+02 0.0091 24.7 14.1 30 24-54 11-40 (216)
28 PF05596 Taeniidae_ag: Taeniid 29.6 2.2E+02 0.0048 21.3 5.8 43 241-292 7-49 (64)
29 PRK11020 hypothetical protein; 28.2 3.3E+02 0.0071 22.8 7.1 49 192-240 3-51 (118)
30 KOG0243 Kinesin-like protein [ 28.1 4.9E+02 0.011 29.9 10.6 116 189-310 406-527 (1041)
31 KOG0804 Cytoplasmic Zn-finger 27.4 4.7E+02 0.01 27.2 9.5 66 192-257 380-451 (493)
32 PF10147 CR6_interact: Growth 27.0 5.2E+02 0.011 24.1 12.3 37 226-262 138-174 (217)
33 PF12325 TMF_TATA_bd: TATA ele 26.5 3.9E+02 0.0084 22.5 10.0 34 222-255 84-117 (120)
34 cd07637 BAR_ACAP3 The Bin/Amph 26.0 3.5E+02 0.0076 24.7 7.8 103 186-292 1-109 (200)
35 PRK10884 SH3 domain-containing 25.8 5.2E+02 0.011 23.7 9.0 25 224-248 143-167 (206)
36 PF14712 Snapin_Pallidin: Snap 24.8 3.3E+02 0.0072 21.1 8.0 71 220-293 7-77 (92)
37 PF05377 FlaC_arch: Flagella a 24.3 2.8E+02 0.0062 20.1 5.5 25 233-257 20-44 (55)
38 cd07598 BAR_FAM92 The Bin/Amph 24.0 4.8E+02 0.01 24.1 8.4 20 271-290 88-107 (211)
39 KOG3647 Predicted coiled-coil 22.9 7E+02 0.015 24.2 9.4 58 179-248 104-161 (338)
40 PHA03247 large tegument protei 22.9 1.6E+03 0.035 29.0 14.0 85 178-271 1656-1748(3151)
41 PHA00728 hypothetical protein 21.5 1.7E+02 0.0038 24.7 4.4 24 188-211 6-29 (151)
42 cd07639 BAR_ACAP1 The Bin/Amph 21.4 6.4E+02 0.014 23.1 11.1 23 188-210 3-25 (200)
43 COG4046 Uncharacterized protei 21.2 4.5E+02 0.0097 26.1 7.7 66 225-292 52-118 (368)
44 PRK11637 AmiB activator; Provi 21.1 8.7E+02 0.019 24.6 13.4 31 222-252 105-135 (428)
45 COG3620 Predicted transcriptio 20.8 1.2E+02 0.0026 27.1 3.5 59 1-69 3-62 (187)
46 PF13907 DUF4208: Domain of un 20.7 39 0.00084 27.3 0.4 43 53-95 21-63 (100)
47 PRK09039 hypothetical protein; 20.6 6E+02 0.013 25.2 8.9 28 186-213 136-163 (343)
48 PF07464 ApoLp-III: Apolipopho 20.3 6E+02 0.013 22.3 9.6 61 186-246 91-151 (155)
No 1
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=2.2e-53 Score=430.31 Aligned_cols=258 Identities=34% Similarity=0.526 Sum_probs=241.4
Q ss_pred CCCChHHHHHHhcccCC-CCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHH
Q 017608 1 MVPTKEEETKLSSYKGN-INELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLK 79 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd-~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~ 79 (368)
++||.||+..|++|.|+ ++.|++||||++.|++||++.+||+||+|+.+|++.+.++.++|..+..||++|++|+.|+.
T Consensus 122 ~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~ 201 (432)
T smart00498 122 YAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRK 201 (432)
T ss_pred hCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 58999999999999886 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhh
Q 017608 80 LLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEER 159 (368)
Q Consensus 80 lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~ 159 (368)
||++||++|||||+|++||+|.||+|+||.||.+|||+|+++||||||++.|.++
T Consensus 202 lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~k~tLLhylv~~i~~~------------------------- 256 (432)
T smart00498 202 LLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADNKTTLLHFLVKIIRKK------------------------- 256 (432)
T ss_pred HHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCCCccHHHHHHHHHHHh-------------------------
Confidence 9999999999999999999999999999999999999999999999999988653
Q ss_pred HHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhh-hc-ccCCcchHHHHHHHHHHHHHHHH
Q 017608 160 EEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDL-CI-DEKSGNFVHSMNAFVKYAERNIK 237 (368)
Q Consensus 160 e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~-~~-~~~~d~f~~~m~~Fl~~a~~~l~ 237 (368)
| |++..|.+||++|..|++++ ++|.+++.++.+++..++..+.. +. .+.+|.|..+|.+|+..|..+++
T Consensus 257 ---~-----p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~ 327 (432)
T smart00498 257 ---Y-----PDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYD 327 (432)
T ss_pred ---C-----hhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 3 45789999999999999999 99999999999999998876532 11 23458999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 238 ELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKN 294 (368)
Q Consensus 238 ~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~ 294 (368)
.|...+.++...|.+++.||||+++.. +|++||++|.+|+..|.+|++||.++.+
T Consensus 328 ~l~~~~~~~~~~~~~~~~yfge~~~~~--~~~efF~~f~~F~~~f~ka~~en~~~~~ 382 (432)
T smart00498 328 KLQKDLSDLKTRFEKLVEYYGEDPKDT--SPEEFFKDFNEFLKEFSKAAEENIKKEE 382 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874 4999999999999999999999987754
No 2
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=2.7e-51 Score=407.20 Aligned_cols=248 Identities=36% Similarity=0.587 Sum_probs=227.3
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKL 80 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~l 80 (368)
++||+||++.+++|.|+++.|++||+|++.|++||++++||+||.|+.+|++.++++.+.|..+..||++|++|+.|+.+
T Consensus 121 ~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~l 200 (370)
T PF02181_consen 121 ILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRL 200 (370)
T ss_dssp HCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhhH
Q 017608 81 LEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEERE 160 (368)
Q Consensus 81 L~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~e 160 (368)
|.+||++|||||+|+++|+|.||+|+||.||.+|||+|+++||||||++.+.++
T Consensus 201 L~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~~tLL~~l~~~~~~~-------------------------- 254 (370)
T PF02181_consen 201 LEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNKTTLLHYLVKIVEEK-------------------------- 254 (370)
T ss_dssp HHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTT--------------------------
T ss_pred HHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCCchHHHHHHHHHHhc--------------------------
Confidence 999999999999999999999999999999999999999999999999987542
Q ss_pred HHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCcchHHHHHHHHHHHHHHHHH
Q 017608 161 EDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCID--EKSGNFVHSMNAFVKYAERNIKE 238 (368)
Q Consensus 161 ~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~--~~~d~f~~~m~~Fl~~a~~~l~~ 238 (368)
+ |++..|.+||.+|..|++++++++.+++.+|++++..++.++..... +.++.|...|.+|++.++.++..
T Consensus 255 --~-----~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~ 327 (370)
T PF02181_consen 255 --F-----PDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDE 327 (370)
T ss_dssp --S-----GGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHH
T ss_pred --C-----hHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 2 46788999999999999999999999999999999999999976543 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHH
Q 017608 239 LQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLD 283 (368)
Q Consensus 239 L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~ 283 (368)
|++.+.++.+.+.+++.||||+++... +++||++|.+|+..|+
T Consensus 328 l~~~~~~~~~~~~~~~~yfge~~~~~~--~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 328 LQELYEELEEAFKQLLQYFGEDPKKMS--PEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTCCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHhC
Confidence 999999999999999999999998654 9999999999999986
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=2.9e-44 Score=365.68 Aligned_cols=262 Identities=27% Similarity=0.392 Sum_probs=245.5
Q ss_pred CCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHHHH
Q 017608 2 VPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKLL 81 (368)
Q Consensus 2 lPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~lL 81 (368)
+|.+|-+..|.++....+.|.++|||...|.+|++++.||.+++|+.+|.+.+++|++.+..+..||++|++|++|..+|
T Consensus 742 lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lL 821 (1102)
T KOG1924|consen 742 LPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLL 821 (1102)
T ss_pred CCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHH
Confidence 69999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhhHH
Q 017608 82 EAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEEREE 161 (368)
Q Consensus 82 ~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~e~ 161 (368)
++||.+|||||+|+.+.+|+||.+++|.||.||||.|+++||||||+..+.+
T Consensus 822 eLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~e~---------------------------- 873 (1102)
T KOG1924|consen 822 ELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSADQKTTLLHFLAEICEE---------------------------- 873 (1102)
T ss_pred HHHHHHhcccccccccchhhccchHHHHhhccccccchhhHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999997643
Q ss_pred HHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhc--ccCCcchHHHHHHHHHHHHHHHHHH
Q 017608 162 DYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCI--DEKSGNFVHSMNAFVKYAERNIKEL 239 (368)
Q Consensus 162 ~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~--~~~~d~f~~~m~~Fl~~a~~~l~~L 239 (368)
+|| .++.|.+||.+|.+||+++.+.|...+..++..+.+++.-+.... ....|.|.++|..|.+.|..+++.|
T Consensus 874 kyp-----d~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~l 948 (1102)
T KOG1924|consen 874 KYP-----DILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKL 948 (1102)
T ss_pred hCh-----hhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHH
Confidence 575 589999999999999999999999999999999999998876432 3467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchh
Q 017608 240 QEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDL 298 (368)
Q Consensus 240 ~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~ 298 (368)
...+..|++.|+++.+||..||++.. .++||..+++|...|..|..||.++.++.+.
T Consensus 949 s~M~~~M~~lye~L~eYyaFd~kkys--mEEFFaDi~tFrnaf~ea~~en~krRee~Ek 1005 (1102)
T KOG1924|consen 949 SSMHGNMEKLYESLGEYYAFDPKKYS--MEEFFADIRTFRNAFLEAVAENEKRREEEEK 1005 (1102)
T ss_pred HHHHHHHHHHHHHHHHHeecCcccCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 9999999999999999999999887544443
No 4
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=6.4e-36 Score=305.93 Aligned_cols=252 Identities=26% Similarity=0.357 Sum_probs=235.1
Q ss_pred CCCChHHHHHHhcccC---CCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhH
Q 017608 1 MVPTKEEETKLSSYKG---NINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLF 77 (368)
Q Consensus 1 ilPt~EE~~~l~~~~g---d~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L 77 (368)
|+||.+|...+++|.. +...|++.|+|++.+..|+|+++|+..|.|+.+|.+.+.-+.+++..+..|+..+++|.+|
T Consensus 484 ~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~l 563 (830)
T KOG1923|consen 484 ILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKL 563 (830)
T ss_pred cCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 6899999999999953 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchh
Q 017608 78 LKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVE 157 (368)
Q Consensus 78 ~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~ 157 (368)
+.+|++||++|||||.+. ||.++||+|.||.-|.+|||+|.++|||||++..+..
T Consensus 564 r~VleiILA~gNymns~k-Rg~ayGFklqslD~ll~tkStDr~~tLlh~iv~~i~e------------------------ 618 (830)
T KOG1923|consen 564 RPVLEIILAFGNYMNSSK-RGAAYGFKLQSLDSLLDTKSTDRSMTLLHYIVLTIAE------------------------ 618 (830)
T ss_pred HHHHHHHHHhhccCCCcc-cccccceeccccHHHhhccCCccceeeeehhhHHHHH------------------------
Confidence 999999999999999997 6999999999999999999999999999999987643
Q ss_pred hhHHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHH
Q 017608 158 EREEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIK 237 (368)
Q Consensus 158 ~~e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~ 237 (368)
.| |.+..|.++|.-+++|+.++++.+..|+.+|.+++...+++.+.... | ..|+.|+...+.+++
T Consensus 619 ----kl-----p~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~---~---~iL~~F~~n~~~kmk 683 (830)
T KOG1923|consen 619 ----KL-----PALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGL---D---VILSEFLDNNKPKMK 683 (830)
T ss_pred ----hh-----HHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhcc---c---hHHHHHHhcccHHHH
Confidence 45 46899999999999999999999999999999999999998865432 2 689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 238 ELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKN 294 (368)
Q Consensus 238 ~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~ 294 (368)
.|+++++.+...|..++.||||.|+... |.-||..|..|+..|+.+..||+.+++
T Consensus 684 kl~~~~k~A~~af~~~~~y~Gespk~tp--pt~ff~~f~~F~~~~k~~~~ene~k~~ 738 (830)
T KOG1923|consen 684 KLRKDFKDAAEAFEDVVEYFGESPKTTP--PTVFFQLFVRFVRAYKMARQENEQKKK 738 (830)
T ss_pred HHHHHHHHHHHHHHhHhHhhCCCCCCCC--CCccHHHHHHHHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999997765 899999999999999999999987755
No 5
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=7e-33 Score=301.17 Aligned_cols=276 Identities=43% Similarity=0.642 Sum_probs=255.2
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHH-HhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKA-MLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLK 79 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~-L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~ 79 (368)
+.||++|...++.|.++...|+.+|+|+.+ +..||.+..|++++.|+..|...+..+.+.+..+..||++++++..|.+
T Consensus 511 ~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~ 590 (833)
T KOG1922|consen 511 FAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLK 590 (833)
T ss_pred cCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 579999999999999998999999999998 5679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhh
Q 017608 80 LLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEER 159 (368)
Q Consensus 80 lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~ 159 (368)
++++||..|||||.|+.+|+|+||+|++|.||.|+|+.++++++||+++..+.+.+|.+.+. .
T Consensus 591 ~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~-----------------~ 653 (833)
T KOG1922|consen 591 ILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSDGKTTLLHFVVPEVVRSEGKRSVI-----------------D 653 (833)
T ss_pred HHHHHHHhcccccccccccccchhhHHHHhhhhhhhcccccchhhhhhHHHHHHhhccccch-----------------h
Confidence 99999999999999999999999999999999999999999888888888788877643221 2
Q ss_pred HHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhh-hhcc---cCCcchHHHHHHHHHHHHHH
Q 017608 160 EEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLD-LCID---EKSGNFVHSMNAFVKYAERN 235 (368)
Q Consensus 160 e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~-~~~~---~~~d~f~~~m~~Fl~~a~~~ 235 (368)
++.|..+++|.+.+|..||.+|..|++++++.+.+++..+.+++.++.+.+. .... +..+.|..+|..|+..|+.+
T Consensus 654 ~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~e 733 (833)
T KOG1922|consen 654 VEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKE 733 (833)
T ss_pred hhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHH
Confidence 4568888999999999999999999999999999999999999999999995 4433 36889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 236 IKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKN 294 (368)
Q Consensus 236 l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~ 294 (368)
+..+...+..+...+..++.|||++++ .+.++..+|.++.+|+..|++|++|+.+..+
T Consensus 734 v~~l~~~~~~~~~~~~~~~~yf~~~~~-~~~~~~~~f~~~r~fl~~~~~~~~e~~~~~~ 791 (833)
T KOG1922|consen 734 VKLLISEEREVRESVKKTAKYFGEDPK-EEITPEQVFSILRDFLRTFDKAHEENKKAEE 791 (833)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 4457999999999999999999999999865
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=1.2e-28 Score=242.40 Aligned_cols=298 Identities=19% Similarity=0.227 Sum_probs=241.7
Q ss_pred CCCChHHHHHHhccc-CC-CCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHH
Q 017608 1 MVPTKEEETKLSSYK-GN-INELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFL 78 (368)
Q Consensus 1 ilPt~EE~~~l~~~~-gd-~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~ 78 (368)
|+||.||++.+..-. .+ --.|+.||||++.|++|+-+.+||+.|.|+..|+..-.+|...|-.+..|++++-+|..|+
T Consensus 395 MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtLSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~ 474 (817)
T KOG1925|consen 395 MMPTEEERQKIEGAQLANPEIPLGPAEQFLLTLSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFR 474 (817)
T ss_pred hCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHH
Confidence 689999999998642 23 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhh
Q 017608 79 KLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEE 158 (368)
Q Consensus 79 ~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~ 158 (368)
-+|.++|+||||||+.. ++||.|+.|.|..++|++-.|.||||+|+..+.+
T Consensus 475 ~il~tLLAIGNfLnGT~----~KgFeLsYLeKvsEVKDtV~KqsLlhHlc~~vVE------------------------- 525 (817)
T KOG1925|consen 475 CILATLLAIGNFLNGTQ----SKGFELSYLEKVSEVKDTVRKQSLLHHLCSLVVE------------------------- 525 (817)
T ss_pred HHHHHHHHHhccccCcc----ccceehHhhhhchhhcchHHHHHHHHHHHHHHHH-------------------------
Confidence 99999999999999874 8999999999999999999999999999998764
Q ss_pred hHHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCcchHHHHHHHHHHHHHHHH
Q 017608 159 REEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCI-DEKSGNFVHSMNAFVKYAERNIK 237 (368)
Q Consensus 159 ~e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~-~~~~d~f~~~m~~Fl~~a~~~l~ 237 (368)
+|+ +-.++..|+..|...++||++++...+..|++.++.....+..-+ .+-.......|..|+..+..++.
T Consensus 526 ---~Fp-----essDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~ 597 (817)
T KOG1925|consen 526 ---TFP-----ESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRIA 597 (817)
T ss_pred ---hCC-----cchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 343 467788999999999999999999999999999887776664322 22344567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCc-CcCChhchHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhhccc-
Q 017608 238 ELQEDESRVFLHVREITEYFHGDVSK-EEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDLAGMSIQRGDAQLATRRV- 315 (368)
Q Consensus 238 ~L~~~~~~~~~~~~~l~~yFgEd~~~-~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~~~~~q~~~~~~~~rr~- 315 (368)
.|+.-+..+.+.|+..+-|||..+.. .+.++++||.++.+|...|...+..+-..+. ++ .-..+-.+.|-
T Consensus 598 ~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~q--k~------A~~RERNKTRGK 669 (817)
T KOG1925|consen 598 MLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQQ--KQ------ATYRERNKTRGK 669 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHHH--HH------HHHHhhcccccc
Confidence 99999999999999999999988743 2357999999999999999876543321110 00 00111122222
Q ss_pred -c-cccCcc--CCCCCccceeeeecCCccccc
Q 017608 316 -T-FFKGFG--RKSNCVMMCFVIIGPNTLAEN 343 (368)
Q Consensus 316 -~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 343 (368)
| ..|+++ ..+.-.+-.-+-++|.+.|+.
T Consensus 670 mit~~Gkfs~~G~~pA~Ps~p~~~s~G~~A~d 701 (817)
T KOG1925|consen 670 MITETGKFSGVGEAPANPSVPVAVSSGPGAGD 701 (817)
T ss_pred eeeecccccCCCCCCCCcccccccCCCCCCcc
Confidence 1 444444 555566666677777777653
No 7
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=95.90 E-value=0.063 Score=54.94 Aligned_cols=115 Identities=33% Similarity=0.409 Sum_probs=89.0
Q ss_pred hHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 175 STELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCIDE-KSG----NFVHSMNAFVKYAERNIKELQEDESRVFLH 249 (368)
Q Consensus 175 ~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~-~~d----~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 249 (368)
..-+.....++...++.+...+..+...+..+...+...+.. ..+ .|...+..|...++..+...+....+....
T Consensus 312 ~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~ 391 (432)
T smart00498 312 IEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQL 391 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444567788899999999999999999888877543322 223 456667777777877788888888888999
Q ss_pred HHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHH
Q 017608 250 VREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKEL 289 (368)
Q Consensus 250 ~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~ 289 (368)
......||+..+...+..|..+|.+..+|...+++.++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~ 431 (432)
T smart00498 392 VKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDSLLEEL 431 (432)
T ss_pred HHHHHhhhhhhhhhhhccchhhhhhhhhhhhhHHHHHHhh
Confidence 9999999998765444468889999999999999999875
No 8
>PRK10132 hypothetical protein; Provisional
Probab=66.24 E-value=41 Score=27.84 Aligned_cols=43 Identities=7% Similarity=-0.035 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017608 219 GNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDV 261 (368)
Q Consensus 219 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~ 261 (368)
+....++...+..++.++................+-.|-.+.|
T Consensus 44 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P 86 (108)
T PRK10132 44 EAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP 86 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc
Confidence 4556778888888888888777766667788888888988887
No 9
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=60.96 E-value=56 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=25.3
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhhh
Q 017608 185 ATIDLDVLASSVSNLKDGMAKLQHLLDL 212 (368)
Q Consensus 185 ski~l~~l~~~~~~L~~~l~~~~~~l~~ 212 (368)
...+..++...+..|+..+.+++..+..
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~ 46 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRE 46 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999998854
No 10
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.62 E-value=61 Score=27.32 Aligned_cols=32 Identities=9% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 017608 229 VKYAERNIKELQEDESRVFLHVREITEYFHGD 260 (368)
Q Consensus 229 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd 260 (368)
+.....++..|+..+..+...|..++..|||-
T Consensus 63 ~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 63 LRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 35566778899999999999999999999984
No 11
>PRK10404 hypothetical protein; Provisional
Probab=60.47 E-value=63 Score=26.35 Aligned_cols=43 Identities=7% Similarity=0.072 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCC
Q 017608 219 GNFVHSMNAFVKYAERNIKELQEDESR-VFLHVREITEYFHGDV 261 (368)
Q Consensus 219 d~f~~~m~~Fl~~a~~~l~~L~~~~~~-~~~~~~~l~~yFgEd~ 261 (368)
+.....+...+..++.++..+.+.... .+.....+-.|-.++|
T Consensus 37 ~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 37 VELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345667777777887777776665444 5666777777888877
No 12
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=58.93 E-value=2.1e+02 Score=29.10 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=34.8
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhccchhhh-------hhhhhhhhHHhhcccccccCccCC
Q 017608 268 PLRIFVIVRDFLGMLDHVCKELRNLKNYRDLAG-------MSIQRGDAQLATRRVTFFKGFGRK 324 (368)
Q Consensus 268 ~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~~-------~~~q~~~~~~~~rr~~~~~~~~~~ 324 (368)
.+++......|...|.....|+.+|+.-++... ....+.-+.+.++|..+....|++
T Consensus 334 l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~Gdy 397 (412)
T PF04108_consen 334 LEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLREEEQRRREAFLKEYGDY 397 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 445555566788899999999988864332211 112333334666676677666654
No 13
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=50.74 E-value=98 Score=22.75 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 223 HSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKN 294 (368)
Q Consensus 223 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~ 294 (368)
..|..+..........+...+..+......+...+.++. .+.|...+..|...+.+....+.....
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a------~~af~~~~~~~~~~~~~~~~~L~~~~~ 72 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEA------ADAFQDKFEEWNQAFRQLNEALEELSQ 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSST------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777778888888888888888877775432 566888888888888888877777654
No 14
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=49.63 E-value=1.3e+02 Score=24.69 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCC
Q 017608 190 DVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKEL-QEDESRVFLHVREITEYFHGDV 261 (368)
Q Consensus 190 ~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L-~~~~~~~~~~~~~l~~yFgEd~ 261 (368)
+.+..+++.|-..+..+=+.-.....+.-++...+...-+.+++.++... ..-....+......=.|-+++|
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 44555555554444332221111112233455667777777888887777 4455566677777777888887
No 15
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.74 E-value=2.4e+02 Score=26.68 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=48.7
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhhh----cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 186 TIDLDVLASSVSNLKDGMAKLQHLLDLC----IDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYF 257 (368)
Q Consensus 186 ki~l~~l~~~~~~L~~~l~~~~~~l~~~----~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 257 (368)
.+-++++.+++..++..+..+...++.. ....+..=...+..=+..|..+...|......+.+....+-.+-
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665544211 11223344677888888899999999999999988888887765
No 16
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.89 E-value=1.4e+02 Score=24.38 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=50.9
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017608 184 TATIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITE 255 (368)
Q Consensus 184 Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 255 (368)
|.+-+++.+...+....+.+..++..++.-+. ..=...+.--+...+.+++.+...++.+.....-++.
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt---~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPT---RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888889988888864332 1226778888888888888888888887776655553
No 17
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=43.18 E-value=1.3e+02 Score=22.13 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc-ccCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 192 LASSVSNLKDGMAKLQHLLDLCI-DEKSGNFVHSMNA-FVKYAERNIKELQEDESRVFLHVRE 252 (368)
Q Consensus 192 l~~~~~~L~~~l~~~~~~l~~~~-~~~~d~f~~~m~~-Fl~~a~~~l~~L~~~~~~~~~~~~~ 252 (368)
+..++..|.+.+.+++..+.... .=.+..|+...-+ -++.-..++..+...+..+.+....
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666555553210 0023345544432 4455556666676666666665544
No 18
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.94 E-value=1.5e+02 Score=23.38 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCC
Q 017608 192 LASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDE-SRVFLHVREITEYFHGDV 261 (368)
Q Consensus 192 l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~-~~~~~~~~~l~~yFgEd~ 261 (368)
+..++..|...+..+.+.......+.-+.....+...+..+..++....... ..+.+....+-.|-.+.|
T Consensus 3 l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 3 LKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 3444445544444444333211111122334555555555555555433322 233344445555655555
No 19
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.69 E-value=3.1e+02 Score=29.92 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccc
Q 017608 220 NFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYR 296 (368)
Q Consensus 220 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~ 296 (368)
.+......+++.|...-..|......+++....++.-.|+.+.-.. .++.-=+++.+-+..+..+..++++++.++
T Consensus 47 e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr~qk~eR 122 (660)
T KOG4302|consen 47 ECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLRKQKDER 122 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999987764322 233344478888888888888888887743
No 20
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.68 E-value=3.6e+02 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=11.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 017608 188 DLDVLASSVSNLKDGMAKLQHLL 210 (368)
Q Consensus 188 ~l~~l~~~~~~L~~~l~~~~~~l 210 (368)
++.+....|.++++.+..++..+
T Consensus 82 si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 82 SIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444444
No 21
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.22 E-value=5.6e+02 Score=27.67 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 220 NFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKN 294 (368)
Q Consensus 220 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~ 294 (368)
.-...+.+-+..+...++.|-+..+.....|=+++.-.++-|. |--.+.-...-....+++..|+++.+.
T Consensus 59 ~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPD-----P~pll~sa~~~l~k~~~~~~e~~~lk~ 128 (629)
T KOG0963|consen 59 DKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPD-----PVPLLASAAELLNKQQKASEENEELKE 128 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCC-----CchHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 3467888999999999999999999999999999999998774 333666666666667777777776644
No 22
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.94 E-value=2.4e+02 Score=24.78 Aligned_cols=66 Identities=12% Similarity=0.131 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 190 DVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVH--SMNAFVKYAERNIKELQEDESRVFLHVREITEYF 257 (368)
Q Consensus 190 ~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~--~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 257 (368)
.....+..+|+.++..+++++.. ....|+|.+ +++.-++.++.+++.+.+.....+..++....++
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~--iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA--ISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT--S-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888887743 234567754 4555666666666666666666666666555543
No 23
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.78 E-value=3.2e+02 Score=31.93 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=53.1
Q ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcC
Q 017608 185 ATIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKE 264 (368)
Q Consensus 185 ski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~ 264 (368)
+..|+..|...+.+|++.+......+..-.. . +.-+..-+..|...++.|+.+...+...+.++.+-+ +-.+
T Consensus 1223 s~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~----~-Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~-~~ik-- 1294 (1758)
T KOG0994|consen 1223 SAEDIAQLASATESLRRQLQALTEDLPQEEE----T-LSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL-EKIK-- 1294 (1758)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----h-hhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhh--
Confidence 3456677777777888777776655522110 0 222334455666778888888888888888877766 2222
Q ss_pred cCChhchHHHHHHHHHHHHHH
Q 017608 265 EANPLRIFVIVRDFLGMLDHV 285 (368)
Q Consensus 265 ~~~~~~fF~~~~~F~~~f~~A 285 (368)
..+|.+.|..-...|.+.
T Consensus 1295 ---~sdi~GA~~~~r~a~~~s 1312 (1758)
T KOG0994|consen 1295 ---ESDILGAFNSTRHAYEQS 1312 (1758)
T ss_pred ---ccCchhHHHHHHHHHHHH
Confidence 234555555555555443
No 24
>PRK11637 AmiB activator; Provisional
Probab=33.25 E-value=5.3e+02 Score=26.15 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 223 HSMNAFVKYAERNIKELQEDESRVFLHVREITEYF 257 (368)
Q Consensus 223 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 257 (368)
..+..=+...+.++..++..+....+.+...+.+.
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666665555544
No 25
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=32.85 E-value=2.5e+02 Score=23.57 Aligned_cols=69 Identities=12% Similarity=0.190 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHh
Q 017608 220 NFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNL 292 (368)
Q Consensus 220 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~ 292 (368)
.+...+..|+..-+.+++.|+.-...++........ |+...-.+|-.-|..+..|...|.+..+-++..
T Consensus 15 ~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 15 ELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 467888999999999999999888888887766653 322221257778999999999999887666655
No 26
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=32.58 E-value=4.2e+02 Score=24.73 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=46.2
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------CcCc-CChhchHHHHHHHHHHHHHHH
Q 017608 214 IDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDV------SKEE-ANPLRIFVIVRDFLGMLDHVC 286 (368)
Q Consensus 214 ~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~------~~~~-~~~~~fF~~~~~F~~~f~~A~ 286 (368)
+....|.|...-+.|+......+..+......+...-++++.-||.=. +..+ .....+|+.+.++...+++..
T Consensus 17 ~~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l~ 96 (218)
T cd07663 17 GVKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKVE 96 (218)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 334566788888888888888888888877777777777666655411 0011 124556666666655555444
Q ss_pred H
Q 017608 287 K 287 (368)
Q Consensus 287 ~ 287 (368)
.
T Consensus 97 ~ 97 (218)
T cd07663 97 D 97 (218)
T ss_pred H
Confidence 3
No 27
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=32.43 E-value=4.2e+02 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhHhHH
Q 017608 24 AEKFVKAMLGIPFAFQRAEVMLYRETFEDEV 54 (368)
Q Consensus 24 aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~ 54 (368)
+|-++.-+.-+|- ..|..-++|...+..-.
T Consensus 11 ~Eial~~iL~Lpi-p~r~~~~~~~~~~~~~~ 40 (216)
T KOG1962|consen 11 AEIALFLILLLPI-PPRRRRKIFKDRLKSGL 40 (216)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhh
Confidence 5666766666666 66666666665554443
No 28
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=29.64 E-value=2.2e+02 Score=21.30 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHh
Q 017608 241 EDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNL 292 (368)
Q Consensus 241 ~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~ 292 (368)
..-..+++....+-.||.+||-. ..+.+.+..|..++.+.+..
T Consensus 7 ~~~k~~kK~i~~v~~FF~~DPlG---------qkIa~l~kdw~~~~~~~r~K 49 (64)
T PF05596_consen 7 DDKKSVKKWIEEVRNFFYEDPLG---------QKIAQLAKDWNEICQEVRKK 49 (64)
T ss_pred hhHHhHHHHHHHHHHHhccCchH---------HHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888899999833 34567777777777776654
No 29
>PRK11020 hypothetical protein; Provisional
Probab=28.20 E-value=3.3e+02 Score=22.82 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017608 192 LASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQ 240 (368)
Q Consensus 192 l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~ 240 (368)
+.++++.|.+.|..|++.+.......+...+..+..=++....++..|.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999998887654333343333333333333344444443
No 30
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.09 E-value=4.9e+02 Score=29.94 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCcch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017608 189 LDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNF------VHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVS 262 (368)
Q Consensus 189 l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f------~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~ 262 (368)
+.++..++..|++++...+..-... -+.+.+ ...+..-++.-+.+++.+++.+..+.+.|.....-.- .-.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvy--isee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~-~l~ 482 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVY--ISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKE-LLK 482 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceE--echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHH
Confidence 3455555666666655554432111 123344 3455555666666666666666666665542222110 000
Q ss_pred cCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhHH
Q 017608 263 KEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDLAGMSIQRGDAQL 310 (368)
Q Consensus 263 ~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~~~~~q~~~~~~ 310 (368)
+ ..+..=..+..+...+..-.+++++.+.+.+.....+++++..+
T Consensus 483 ~---~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se 527 (1041)
T KOG0243|consen 483 E---EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSE 527 (1041)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12333344455555555555555544433222233344444433
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.37 E-value=4.7e+02 Score=27.18 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc------ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 192 LASSVSNLKDGMAKLQHLLDLCI------DEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYF 257 (368)
Q Consensus 192 l~~~~~~L~~~l~~~~~~l~~~~------~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 257 (368)
++..++++...++++++++.... ....+-+..+++.--+.-.+.+...+.....+++...+++-|+
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 44556666677777776653210 1234566777777777777888888999999999999999877
No 32
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=26.96 E-value=5.2e+02 Score=24.09 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017608 226 NAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVS 262 (368)
Q Consensus 226 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~ 262 (368)
..|-.....+-........+-......+..|||....
T Consensus 138 ~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vD 174 (217)
T PF10147_consen 138 AEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVD 174 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 3333333333444555555566677889999997653
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.51 E-value=3.9e+02 Score=22.46 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017608 222 VHSMNAFVKYAERNIKELQEDESRVFLHVREITE 255 (368)
Q Consensus 222 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 255 (368)
+..+-..+..-..+++.|+.+...+++-|+..+.
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788889999999999988877654
No 34
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.99 E-value=3.5e+02 Score=24.73 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhcCC
Q 017608 186 TIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAER------NIKELQEDESRVFLHVREITEYFHG 259 (368)
Q Consensus 186 ki~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~------~l~~L~~~~~~~~~~~~~l~~yFgE 259 (368)
+..++.++.++.+|+..+.++-+.+..-... ...+....+.|...-.. .=..+.+-+.+.-..+.+++.|...
T Consensus 1 r~~~~~~E~~~~~le~~l~kl~K~~~~~~d~-g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 1 RATIDEVETDVVEIEAKLDKLVKLCSGMIEA-GKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCcCcCChhchHHHHHHHHHHHHHHHHHHHHh
Q 017608 260 DVSKEEANPLRIFVIVRDFLGMLDHVCKELRNL 292 (368)
Q Consensus 260 d~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~ 292 (368)
--...+ ..+..-+.+|++.=-+..+|.+++
T Consensus 80 l~~q~e---~~l~~pL~~F~k~dL~~~KE~rK~ 109 (200)
T cd07637 80 LFDQAQ---RSVRQQLHSFVKEDVRKFKETKKQ 109 (200)
T ss_pred HHHHHH---HHHHHHHHHHHHHHhHHHHHHHHH
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.80 E-value=5.2e+02 Score=23.75 Aligned_cols=25 Identities=4% Similarity=-0.009 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 224 SMNAFVKYAERNIKELQEDESRVFL 248 (368)
Q Consensus 224 ~m~~Fl~~a~~~l~~L~~~~~~~~~ 248 (368)
.+..=+..+..+++.|+...+..++
T Consensus 143 ~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 143 KLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444
No 36
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.76 E-value=3.3e+02 Score=21.05 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=50.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhh
Q 017608 220 NFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLK 293 (368)
Q Consensus 220 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~ 293 (368)
++...+.|-+......+.+|......+......+...|.+-..... +.+.|.... .......+.+++....
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~--~~~~~~~~~-y~~KL~~ikkrm~~l~ 77 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ--INEPFDLDP-YVKKLVNIKKRMSNLH 77 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHhhH-HHHHHHHHHHHHHHHH
Confidence 5677888889999999999999998888888888888854432111 344565555 6666666666665554
No 37
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.30 E-value=2.8e+02 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 017608 233 ERNIKELQEDESRVFLHVREITEYF 257 (368)
Q Consensus 233 ~~~l~~L~~~~~~~~~~~~~l~~yF 257 (368)
+.+.+.+.+...++.+.+++++..|
T Consensus 20 k~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 20 KKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 38
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.02 E-value=4.8e+02 Score=24.06 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 017608 271 IFVIVRDFLGMLDHVCKELR 290 (368)
Q Consensus 271 fF~~~~~F~~~f~~A~~e~~ 290 (368)
|...|..|...++.+..+++
T Consensus 88 v~epLk~Y~~l~k~~k~~~K 107 (211)
T cd07598 88 VVQPLALYGTICKHARDDLK 107 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444
No 39
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.90 E-value=7e+02 Score=24.17 Aligned_cols=58 Identities=3% Similarity=0.088 Sum_probs=30.8
Q ss_pred hhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 179 YNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFL 248 (368)
Q Consensus 179 ~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 248 (368)
..+++.-++-++.|...+.+.+..|+++.... ..+...+++-+.+++.+.+.+..+..
T Consensus 104 ~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasde------------a~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 104 LEVEKVLKSAIQAIQVRLQSSRAQLNNVASDE------------AALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455666666666666666554321 23555555555566655555554443
No 40
>PHA03247 large tegument protein UL36; Provisional
Probab=22.89 E-value=1.6e+03 Score=29.05 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=54.9
Q ss_pred hhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhc--------ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 178 LYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCI--------DEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLH 249 (368)
Q Consensus 178 L~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~--------~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 249 (368)
|..++++..+|.+.+.= |...++.++.+. .++=+.|.+.+.. +...+.+++.|..++...+..
T Consensus 1656 L~~vEea~ELDvqAVeW--------L~qAr~IiDsHpLT~~~~d~~GPm~~yaeRida-L~~lR~~ld~Lrr~le~AEaa 1726 (3151)
T PHA03247 1656 LEQTEKAAELDVAAVDW--------LEHARRVFEAHPLTAARGGGPDPLARLHARLDA-LGETRRRTEALRRSLEAAEAE 1726 (3151)
T ss_pred HHHhhhccccCHHHHHH--------HHHHHHHhccCCcceeccCCCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 66677777677766431 223344444331 1233456666654 445678899999999999999
Q ss_pred HHHHHhhcCCCCCcCcCChhch
Q 017608 250 VREITEYFHGDVSKEEANPLRI 271 (368)
Q Consensus 250 ~~~l~~yFgEd~~~~~~~~~~f 271 (368)
+++.+.-|+-+-.....+++.|
T Consensus 1727 WDeaW~~F~r~~~~~~~S~e~~ 1748 (3151)
T PHA03247 1727 WDEVWGRFGRVRGGAWKSPEAL 1748 (3151)
T ss_pred HHHHHHHHHHhccccccChHHH
Confidence 9999999987765544344433
No 41
>PHA00728 hypothetical protein
Probab=21.52 E-value=1.7e+02 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhh
Q 017608 188 DLDVLASSVSNLKDGMAKLQHLLD 211 (368)
Q Consensus 188 ~l~~l~~~~~~L~~~l~~~~~~l~ 211 (368)
.++++..+-.+|++.+..++..+.
T Consensus 6 eveql~keneelkkkla~leal~n 29 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMN 29 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHc
Confidence 455667777788888877776663
No 42
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.38 E-value=6.4e+02 Score=23.12 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 017608 188 DLDVLASSVSNLKDGMAKLQHLL 210 (368)
Q Consensus 188 ~l~~l~~~~~~L~~~l~~~~~~l 210 (368)
.++.++.++.+|+..|.++.+..
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~ 25 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLG 25 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Confidence 35566777777777766665544
No 43
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.24 E-value=4.5e+02 Score=26.09 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHh
Q 017608 225 MNAFVKYAERNIKELQEDE-SRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNL 292 (368)
Q Consensus 225 m~~Fl~~a~~~l~~L~~~~-~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~ 292 (368)
++.+..+|..++.++...- +..+...++.++||-=+|...+ |..+-.-+...+.+...-.++.-++
T Consensus 52 le~~~~~a~~~~~~~~~~~~~e~es~l~r~~effVI~Pv~id--P~gIi~R~~~Ll~~~~dr~~~~v~r 118 (368)
T COG4046 52 LEKMENDAMKKVVELAVPRRDEAESTLERYAEFFVIPPVDID--PAGIIDRLRHLLEMGEDRFRKLVRR 118 (368)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhheecCcccCC--ccchHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444444443333 4445556666667766665554 6666666666666666555444433
No 44
>PRK11637 AmiB activator; Provisional
Probab=21.08 E-value=8.7e+02 Score=24.56 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 222 VHSMNAFVKYAERNIKELQEDESRVFLHVRE 252 (368)
Q Consensus 222 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 252 (368)
...+..=+...+.++...++.+......+..
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777666555554
No 45
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=20.75 E-value=1.2e+02 Score=27.13 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=38.8
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCC-hHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPF-AFQRAEVMLYRETFEDEVVHLRNSFSMLEEACK 69 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~-~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~ 69 (368)
++|+.+|+...+. .|+-...=+.....|.. |=+||+ ..+++.++..++.-++.+.++.+
T Consensus 3 ~~P~pedlrk~Rk------~LGitQ~dLA~~aGVSQ~~IArlE----~G~vdPrlSt~k~Il~aL~e~e~ 62 (187)
T COG3620 3 MLPTPEDLRKRRK------ELGITQKDLARRAGVSQPYIARLE----AGKVDPRLSTVKRILEALEEAEK 62 (187)
T ss_pred cCCCHHHHHHHHH------HcCCCHHHHHHHcCccHHHHHHHh----cCCCCccHHHHHHHHHHHHHhhc
Confidence 6899999998875 45555555566666653 555665 35677777777766666666544
No 46
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=20.73 E-value=39 Score=27.31 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCCC
Q 017608 53 EVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGT 95 (368)
Q Consensus 53 ~~~~l~~~l~~l~~A~~~l~~S~~L~~lL~~IL~iGN~lN~g~ 95 (368)
.+.-++..|..|....+.+-.......+=..++.|||+++.-.
T Consensus 21 ~m~Pvkk~LkkL~~~~~~l~~~e~a~~lk~~L~~IG~~I~~~l 63 (100)
T PF13907_consen 21 LMRPVKKSLKKLKKPKKGLPRKERAKILKKELLKIGDFIDSIL 63 (100)
T ss_pred HhHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665544444677888888999999988654
No 47
>PRK09039 hypothetical protein; Validated
Probab=20.64 E-value=6e+02 Score=25.17 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=20.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017608 186 TIDLDVLASSVSNLKDGMAKLQHLLDLC 213 (368)
Q Consensus 186 ki~l~~l~~~~~~L~~~l~~~~~~l~~~ 213 (368)
.-.+.-+..+|..|+..+..++..++..
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888887777543
No 48
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=20.27 E-value=6e+02 Score=22.34 Aligned_cols=61 Identities=13% Similarity=0.087 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 186 TIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRV 246 (368)
Q Consensus 186 ki~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~ 246 (368)
.-=-+.|...+..|-....++...+........+...+.++..++.+...+..+.+.+..+
T Consensus 91 ~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 91 NELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334566677777777777777666544445666777778777777777777776665543
Done!