Query 017608
Match_columns 368
No_of_seqs 161 out of 936
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9d_A Diaphanous protein homo 100.0 5.6E-60 1.9E-64 463.5 26.1 263 1-298 57-321 (340)
2 3obv_E Protein diaphanous homo 100.0 3.1E-59 1E-63 473.5 30.0 263 1-298 128-392 (457)
3 2j1d_G DAAM1, disheveled-assoc 100.0 1.7E-58 5.7E-63 472.0 32.5 298 1-334 139-443 (483)
4 4eah_A Formin-like protein 3, 100.0 3.8E-55 1.3E-59 437.4 27.8 253 1-296 132-387 (402)
5 1ux5_A BNI1 protein; structura 100.0 1.1E-54 3.8E-59 435.9 25.0 261 1-297 132-406 (411)
6 4hpq_C ATG17, KLTH0D15642P; au 74.1 13 0.00044 36.6 9.3 131 188-324 236-387 (413)
7 2q12_A DIP13 alpha, DCC-intera 59.0 1E+02 0.0034 27.6 11.8 46 48-93 24-74 (265)
8 3na7_A HP0958; flagellar bioge 46.3 68 0.0023 28.9 8.3 36 220-255 90-125 (256)
9 3t98_B Nucleoporin NUP58/NUP45 35.2 1.5E+02 0.0051 22.7 7.8 35 226-261 58-92 (93)
10 3kpe_A Fusion glycoprotein F0; 33.8 72 0.0025 21.8 4.6 43 50-94 2-44 (51)
11 3etw_A Adhesin A; antiparallel 30.5 2.1E+02 0.0072 22.9 13.6 89 191-297 6-96 (119)
12 3fx7_A Putative uncharacterize 28.8 1.8E+02 0.0061 22.4 6.7 73 170-250 10-86 (94)
13 3okq_A BUD site selection prot 26.6 2.6E+02 0.009 23.0 7.8 66 189-254 56-127 (141)
14 2lw1_A ABC transporter ATP-bin 25.7 2.1E+02 0.0071 21.3 7.2 58 189-246 24-82 (89)
15 3okq_A BUD site selection prot 23.7 3.1E+02 0.011 22.6 10.0 91 190-284 24-114 (141)
16 2lf0_A Uncharacterized protein 22.2 3E+02 0.01 22.0 8.1 49 192-240 8-56 (123)
17 3oja_B Anopheles plasmodium-re 21.9 2.9E+02 0.01 27.3 8.9 42 222-263 546-587 (597)
18 3gwk_C SAG1039, putative uncha 21.1 2.5E+02 0.0084 20.5 11.2 74 225-304 13-86 (98)
19 4fi5_A Nucleoprotein; structur 21.0 3.1E+02 0.011 21.7 6.9 25 186-210 21-45 (113)
No 1
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=5.6e-60 Score=463.47 Aligned_cols=263 Identities=28% Similarity=0.405 Sum_probs=223.9
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKL 80 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~l 80 (368)
++||+||++.|++|.||++.|++||||++.|++||+|.+||+||+|+.+|++.+.++.+++..+..||++|++|+.|+.|
T Consensus 57 ~~Pt~eE~~~l~~~~~~~~~L~~~EqF~~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~l 136 (340)
T 1v9d_A 57 QMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 136 (340)
T ss_dssp HSCCHHHHHHHHTCGGGGGGSCHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHC
T ss_pred cCCCHHHHHHHHHhhCChhhcCHHHHHHHHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhhH
Q 017608 81 LEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEERE 160 (368)
Q Consensus 81 L~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~e 160 (368)
|++||++|||||+|+++|+|.||+|+||.||.||||+|+++||||||++.+..
T Consensus 137 L~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~lv~~~~~--------------------------- 189 (340)
T 1v9d_A 137 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCEN--------------------------- 189 (340)
T ss_dssp C------------------------CCHHHHHHSBCSSTTSBHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHcCcCCCCCCCCceeeeehHHHHhhhhhcCCCCCccHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999997753
Q ss_pred HHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhh--cccCCcchHHHHHHHHHHHHHHHHH
Q 017608 161 EDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLC--IDEKSGNFVHSMNAFVKYAERNIKE 238 (368)
Q Consensus 161 ~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~--~~~~~d~f~~~m~~Fl~~a~~~l~~ 238 (368)
+| |++++|.+||.+|..|++||+++|..++..|.+++..++..++.. ..++.|.|..+|.+|+..|+.++..
T Consensus 190 -~~-----p~l~~f~~eL~~v~~Askvs~~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~ 263 (340)
T 1v9d_A 190 -DH-----PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNK 263 (340)
T ss_dssp -SC-----CTTSSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -hC-----chhccchhHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 24 468999999999999999999999999999999999999988643 2356789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchh
Q 017608 239 LQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDL 298 (368)
Q Consensus 239 L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~ 298 (368)
|+..+..+.+.|.+++.||||||++.. |++||++|.+|+..|++|++||++++++.+.
T Consensus 264 l~~~~~~~~~~~~~l~~yfged~~~~~--~~~fF~~~~~F~~~f~~a~~en~~r~e~eek 321 (340)
T 1v9d_A 264 LRMMHSNMETLYKELGDYFVFDPKKLS--VEEFFMDLHNFRNMFLQAVKENQKRRETEEK 321 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 9999999999999999999999998664443
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=3.1e-59 Score=473.48 Aligned_cols=263 Identities=28% Similarity=0.405 Sum_probs=248.3
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKL 80 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~l 80 (368)
++||+||++.|++|.||.+.|++||||+++|++||+|.+||+||+|+.+|++.+.++.+.|..+..||++|++|+.|+.|
T Consensus 128 ~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~Ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~l 207 (457)
T 3obv_E 128 QMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSL 207 (457)
T ss_dssp HCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCCHHHHHHHHHhccChhhcCHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhhH
Q 017608 81 LEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEERE 160 (368)
Q Consensus 81 L~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~e 160 (368)
|++||++|||||+|+++|+|.||+|+||.||.||||+|+++||||||++.+.+
T Consensus 208 L~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~--------------------------- 260 (457)
T 3obv_E 208 LELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCEN--------------------------- 260 (457)
T ss_dssp HHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999997753
Q ss_pred HHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhh--cccCCcchHHHHHHHHHHHHHHHHH
Q 017608 161 EDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLC--IDEKSGNFVHSMNAFVKYAERNIKE 238 (368)
Q Consensus 161 ~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~--~~~~~d~f~~~m~~Fl~~a~~~l~~ 238 (368)
+| |++++|.+||.+|..|++||+++|..++.+|.+++..++..++.. ..++.|.|..+|.+|+..|+.++..
T Consensus 261 -~~-----p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~ 334 (457)
T 3obv_E 261 -DH-----PEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNK 334 (457)
T ss_dssp -HC-----GGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -cC-----ccccCChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 35 468999999999999999999999999999999999999998753 2356789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchh
Q 017608 239 LQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDL 298 (368)
Q Consensus 239 L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~ 298 (368)
|+..+..+.+.|.+++.||||||++.. |++||++|.+|+..|++|++||.+++++.+.
T Consensus 335 L~~~~~~~~~~~~~l~~yFgedp~~~~--~~eFF~~~~~F~~~fkkA~~eN~~r~e~eek 392 (457)
T 3obv_E 335 LRMMHSNMETLYKELGDYFVFDPKKLS--VEEFFMDLHNFRNMFLQAVKENQKRRETEEK 392 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 9999999999999999999999988765443
No 3
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=1.7e-58 Score=471.97 Aligned_cols=298 Identities=22% Similarity=0.338 Sum_probs=250.6
Q ss_pred CCCChHHHHHHhcccCCCCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhHHHH
Q 017608 1 MVPTKEEETKLSSYKGNINELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLFLKL 80 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~l 80 (368)
++||+||++.|++|.||++.|++||||+++|++||+|.+||+||+|+.+|++.+.++.+.|..+..||++|++|++|+.|
T Consensus 139 ~~Pt~eE~~~l~~~~~d~~~L~~aEqFl~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~l 218 (483)
T 2j1d_G 139 FVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQL 218 (483)
T ss_dssp SCCCHHHHHHHHTTTTCGGGBCHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hCCCHHHHHHHHHhccChhhcCHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCceeeeeccccccccccccC-CCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchhhh
Q 017608 81 LEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGT-DGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVEER 159 (368)
Q Consensus 81 L~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~-d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~~~ 159 (368)
|++||++|||||+| .||+|.||+|+||.||.||||+ |+++||||||++.+.+
T Consensus 219 L~~IL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~~d~k~TLLhylv~~v~~-------------------------- 271 (483)
T 2j1d_G 219 LEVVLAFGNYMNKG-QRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVEN-------------------------- 271 (483)
T ss_dssp HHHHHHHHHHHSCS-SSCCCSCCCGGGGGGGGGSBCSSCTTCBHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHhhhhccC-CCCCceeeehHHHHhhhhcccCCCCCccHHHHHHHHHHH--------------------------
Confidence 99999999999999 7999999999999999999996 9999999999998754
Q ss_pred HHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhc---ccCCcchHHHHHHHHHHHHHHH
Q 017608 160 EEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCI---DEKSGNFVHSMNAFVKYAERNI 236 (368)
Q Consensus 160 e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~---~~~~d~f~~~m~~Fl~~a~~~l 236 (368)
+| |++++|.+||.+|..|++||+++|..++.+|.+++..++.+++... .+++|.|..+|.+|+..|..++
T Consensus 272 --~~-----p~l~~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~ 344 (483)
T 2j1d_G 272 --KY-----PSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSF 344 (483)
T ss_dssp --HC-----GGGGGHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --hC-----chhhchHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHH
Confidence 34 4688999999999999999999999999999999999999997542 3467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhh---c
Q 017608 237 KELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDLAGMSIQRGDAQLAT---R 313 (368)
Q Consensus 237 ~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~~~~~q~~~~~~~~---r 313 (368)
..|+..+..+.+.|.+++.||||||++.. |++||++|.+|+..|++|++||.+++++.+..+++.++.++++++ .
T Consensus 345 ~~L~~~~~~~~~~~~~l~~yFGEd~~~~~--~~~fF~~~~~F~~~f~~A~~en~~~~~~~e~eekr~~~e~~~~~~~~~~ 422 (483)
T 2j1d_G 345 SDVEDLLAEAKDLFTKAVKHFGEEAGKIQ--PDEFFGIFDQFLQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERE 422 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCTTSCC--HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764 999999999999999999999987544333222222222222211 1
Q ss_pred ccccccCccCCCCCccceeee
Q 017608 314 RVTFFKGFGRKSNCVMMCFVI 334 (368)
Q Consensus 314 r~~~~~~~~~~~~~~~~~~~~ 334 (368)
|..-.+..+..++|+||+-+-
T Consensus 423 r~~~~~~~~~~~~g~~D~Ll~ 443 (483)
T 2j1d_G 423 RKMRKAKENSEESGEFDDLVS 443 (483)
T ss_dssp HHHHHC---------------
T ss_pred HHhccCCCCCcccccHHHHHH
Confidence 112223444567789987663
No 4
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=3.8e-55 Score=437.41 Aligned_cols=253 Identities=25% Similarity=0.366 Sum_probs=236.7
Q ss_pred CCCChHHHHHHhcccCC---CCCCChHHHHHHHHhCCCChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHHcchhH
Q 017608 1 MVPTKEEETKLSSYKGN---INELGSAEKFVKAMLGIPFAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELRSSRLF 77 (368)
Q Consensus 1 ilPt~EE~~~l~~~~gd---~~~L~~aE~Fl~~L~~ip~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~L 77 (368)
++||+||++.|++|.|| ++.|++||||+++|+.||+|.+||+||+|+.+|++.+.++.+.+..+..||++|++|++|
T Consensus 132 ~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l 211 (402)
T 4eah_A 132 FLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKL 211 (402)
T ss_dssp TCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 68999999999999765 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCCCcchh
Q 017608 78 LKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNKTKTVE 157 (368)
Q Consensus 78 ~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~~~~~~ 157 (368)
+.||++||++|||||+| .||+|.||+|+||.||.|||++|+++||||||++.+.+
T Consensus 212 ~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~~~~------------------------ 266 (402)
T 4eah_A 212 KQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKE------------------------ 266 (402)
T ss_dssp HHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSBCTTSSSBHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhccCCCCCccHHHHHHHHHHh------------------------
Confidence 99999999999999999 69999999999999999999999999999999998754
Q ss_pred hhHHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHH
Q 017608 158 EREEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIK 237 (368)
Q Consensus 158 ~~e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~ 237 (368)
+| |++.+|.+||.+|..|++||+++|..++.+|++++..+++++..+. ..+|..|+..|..+++
T Consensus 267 ----~~-----p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l~~~~~e~~~~d-------~~~l~~Fl~~a~~~~~ 330 (402)
T 4eah_A 267 ----KY-----PELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIHD-------NSVLRNFLSTNEGKLD 330 (402)
T ss_dssp ----HC-----GGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTC-------CTTTHHHHHHHHHHHH
T ss_pred ----hh-----HHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccc-------hHHHHHHHHHHHHHHH
Confidence 34 4689999999999999999999999999999999999998875421 1379999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccc
Q 017608 238 ELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYR 296 (368)
Q Consensus 238 ~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~ 296 (368)
.|+..+..+.+.|.+++.||||||++. +|++||++|.+|+..|++|++||.++++++
T Consensus 331 ~L~~~~~~~~~~~~~l~~yFgedpk~~--~~~~fF~~~~~F~~~fk~A~~en~~r~~~e 387 (402)
T 4eah_A 331 KLQRDAKTAEEAYNAVVRYFGESPKTT--PPSVFFPVFVRFIRSYKEAEQENEARKKQE 387 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876 499999999999999999999999988744
No 5
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=1.1e-54 Score=435.92 Aligned_cols=261 Identities=15% Similarity=0.228 Sum_probs=238.3
Q ss_pred CCCChHHHH------HHhcccCCCCCCChHHHHHHHHh-CCC-ChHHHHHHHHHHHhhHhHHHHHHHhHHHHHHHHHHHH
Q 017608 1 MVPTKEEET------KLSSYKGNINELGSAEKFVKAML-GIP-FAFQRAEVMLYRETFEDEVVHLRNSFSMLEEACKELR 72 (368)
Q Consensus 1 ilPt~EE~~------~l~~~~gd~~~L~~aE~Fl~~L~-~ip-~~~~RL~~l~~~~~f~~~~~~l~~~l~~l~~A~~~l~ 72 (368)
++||++|.+ .++.|.||++.|++||||+++|+ .|| ++.+||+||+|+.+|++.+.++.+++..+..||++|+
T Consensus 132 ~~P~~~e~e~l~~~~~~~~~~~d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~ 211 (411)
T 1ux5_A 132 YAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQ 211 (411)
T ss_dssp TGGGCCCCTTCCCGGGCCCCSSCSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHhhhccCChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888765 34467799999999999999987 795 5799999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhcccccCCCCCCceeeeeccccccccccccCCCCchHHHHHHHHHHHhhcccchhhhhhcccccCC
Q 017608 73 SSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDALLKLADVKGTDGKTTLLHFVVQEIIRSEGIRVADSIMGKINQRNK 152 (368)
Q Consensus 73 ~S~~L~~lL~~IL~iGN~lN~g~~rg~A~GFkLssL~KL~d~Ks~d~k~tLLhylv~~i~~~e~~~~~~~~~~~~~~k~~ 152 (368)
+|++|+.||++||++|||||+|++ +|.||+|+||.||.|||++|+++||||||++.+.+
T Consensus 212 ~S~~l~~lL~~iL~~GN~mN~g~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~------------------- 270 (411)
T 1ux5_A 212 ESDNLRNVFNVILAVGNFMNDTSK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRL------------------- 270 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCGGG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHH-------------------
T ss_pred hchHHHHHHHHHHHHhCcccCCCC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHH-------------------
Confidence 999999999999999999999985 79999999999999999999999999999997743
Q ss_pred CcchhhhHHHHhhcchhhhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHhhhhc------ccCCcchHHHHH
Q 017608 153 TKTVEEREEDYRRMGLDLVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLLDLCI------DEKSGNFVHSMN 226 (368)
Q Consensus 153 ~~~~~~~e~~~~~l~~p~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l~~~~------~~~~d~f~~~m~ 226 (368)
+| |++++|.+||.+|..|++||+++|.+++.+|.+++..++.+++..+ .+++|.|..+|.
T Consensus 271 ---------~~-----p~l~~f~~eL~~v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~ 336 (411)
T 1ux5_A 271 ---------NY-----PSFNDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTL 336 (411)
T ss_dssp ---------HC-----GGGGGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHH
T ss_pred ---------hC-----cccccccchhhhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHH
Confidence 34 4689999999999999999999999999999999999999987532 257889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccch
Q 017608 227 AFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRD 297 (368)
Q Consensus 227 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~ 297 (368)
+|+..|..++..|+..+..+.+.|.+++.||||||+.. .+|++||++|.+|+..|++|++||.+++++++
T Consensus 337 ~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~-~~~~~fF~~~~~F~~~f~~a~~en~~~~e~~~ 406 (411)
T 1ux5_A 337 PVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDK-FAKISFFKKFADFINEYKKAQAQNLAAEEEER 406 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999732 24999999999999999999999999887544
No 6
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=74.14 E-value=13 Score=36.63 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 017608 188 DLDVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYF---------- 257 (368)
Q Consensus 188 ~l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF---------- 257 (368)
.++.+.+|-.+|..=++.++..++. -+.....++.|+.........+......+.+.|..+..|+
T Consensus 236 lleVv~~Da~EL~~V~~eL~~~~~~-----i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~~i~e~l 310 (413)
T 4hpq_C 236 LFEIVERDDKDLAAINSLLQDAAID-----VASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFEGISALI 310 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555555555554434333333221 1123455566666666666666666666665555544442
Q ss_pred ---CCCCC-cCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchhh-------hhhhhhhhhHHhhcccccccCccCC
Q 017608 258 ---HGDVS-KEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDLA-------GMSIQRGDAQLATRRVTFFKGFGRK 324 (368)
Q Consensus 258 ---gEd~~-~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~-------~~~~q~~~~~~~~rr~~~~~~~~~~ 324 (368)
.+.-- ... ..++.......|...|+....|+.+|+.-..+. .....+.-+.+.++|..|....|++
T Consensus 311 ~~fk~~~~~~~~-~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~G~y 387 (413)
T 4hpq_C 311 QKFKASCLEDIR-QTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLENGNY 387 (413)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11000 000 133444445578888888888888885422221 1222333444666676676666654
No 7
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=59.04 E-value=1e+02 Score=27.61 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=34.0
Q ss_pred HhhHhHHHHHHHhHHHHHHHHHHHHcc-----hhHHHHHHHHHHhcccccC
Q 017608 48 ETFEDEVVHLRNSFSMLEEACKELRSS-----RLFLKLLEAVLKTGNRMNV 93 (368)
Q Consensus 48 ~~f~~~~~~l~~~l~~l~~A~~~l~~S-----~~L~~lL~~IL~iGN~lN~ 93 (368)
..|+..++.+...|..+.++|+.+.++ .....+...+..+|++-++
T Consensus 24 ~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~ 74 (265)
T 2q12_A 24 GVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP 74 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 346778888999999988888887654 3466777777787775444
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.28 E-value=68 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017608 220 NFVHSMNAFVKYAERNIKELQEDESRVFLHVREITE 255 (368)
Q Consensus 220 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 255 (368)
+=+..+..=++.+..++..+++...++++....+-.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777888888888888888888777766543
No 9
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.20 E-value=1.5e+02 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 017608 226 NAFVKYAERNIKELQEDESRVFLHVREITEYFHGDV 261 (368)
Q Consensus 226 ~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~ 261 (368)
..|+.-| .++..|....+.+++.|-.+.+|+-.|.
T Consensus 58 ~~FiaLA-a~l~~lH~~V~~~Ke~Yl~~rr~~~~d~ 92 (93)
T 3t98_B 58 QTFVALA-AQLQSIHENVKVLKEQYLSYRKMFLGDA 92 (93)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3466555 6889999999999999999999987664
No 10
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=33.77 E-value=72 Score=21.80 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=34.9
Q ss_pred hHhHHHHHHHhHHHHHHHHHHHHcchhHHHHHHHHHHhcccccCC
Q 017608 50 FEDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVG 94 (368)
Q Consensus 50 f~~~~~~l~~~l~~l~~A~~~l~~S~~L~~lL~~IL~iGN~lN~g 94 (368)
++..+..++..+..-.+|+.+|. ..++.+--.|-++-||+|.-
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~--~g~~~la~Av~~iQ~~IN~~ 44 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLS--NGVSVLTSKVLDLKNYIDKQ 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999984 45667788888899998864
No 11
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.50 E-value=2.1e+02 Score=22.94 Aligned_cols=89 Identities=9% Similarity=0.125 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhc
Q 017608 191 VLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLR 270 (368)
Q Consensus 191 ~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~ 270 (368)
+|.+.+..|...+..+...=+ .. ...-+.-.+.|..++......+..+.+....+..-= + ..
T Consensus 6 ~i~~~l~~Leae~q~L~~~E~-------qr-y~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~-----~-----~~ 67 (119)
T 3etw_A 6 SLVGELQALDAEYQNLANQEE-------AR-FNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA-----N-----TR 67 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----T-----SC
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c-----cc
Confidence 455666667666666554321 11 345566677888888888888888888888777621 1 12
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHh-hccch
Q 017608 271 IFV-IVRDFLGMLDHVCKELRNL-KNYRD 297 (368)
Q Consensus 271 fF~-~~~~F~~~f~~A~~e~~~~-~~~~~ 297 (368)
||+ .+..-++.|+.+.++++.. +.+.+
T Consensus 68 ~yk~~y~~l~k~Y~~~~keLd~~ik~qek 96 (119)
T 3etw_A 68 FYKSQYQELASKYEDALKKLEAEMEQQKA 96 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 7778899999999999775 44333
No 12
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=28.82 E-value=1.8e+02 Score=22.37 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=43.2
Q ss_pred hhcchhHhhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHh-hhh--c-ccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 170 LVSGLSTELYNVKKTATIDLDVLASSVSNLKDGMAKLQHLL-DLC--I-DEKSGNFVHSMNAFVKYAERNIKELQEDESR 245 (368)
Q Consensus 170 ~l~~f~~eL~~v~~Aski~l~~l~~~~~~L~~~l~~~~~~l-~~~--~-~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~ 245 (368)
++..|..+|..... .|.+.++.|...+..+. .- +.. . .+.-..+...++.|.+.|...+.-|...++-
T Consensus 10 Elr~Fa~~L~~F~d-------~Lq~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 10 EVREFVGHLERFKE-------LLREEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 46667776666443 35566666666555543 10 000 0 0112245677888888888888888888777
Q ss_pred HHHHH
Q 017608 246 VFLHV 250 (368)
Q Consensus 246 ~~~~~ 250 (368)
..+.|
T Consensus 82 le~~~ 86 (94)
T 3fx7_A 82 LEEDY 86 (94)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 66654
No 13
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.60 E-value=2.6e+02 Score=23.05 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 189 LDVLASSVSNLKDGMAKLQHLLDLCID----EKSGNFVHSM--NAFVKYAERNIKELQEDESRVFLHVREIT 254 (368)
Q Consensus 189 l~~l~~~~~~L~~~l~~~~~~l~~~~~----~~~d~f~~~m--~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 254 (368)
+..+..++..+...|..++..+....+ --..+...++ +.|+...+.-+..|++++..+.+.|.-+=
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lVe 127 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLIK 127 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665542211 0111222233 56888888888888888888777775443
No 14
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.74 E-value=2.1e+02 Score=21.30 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017608 189 LDVLASSVSNLKDGMAKLQHLLDLCIDEKSG-NFVHSMNAFVKYAERNIKELQEDESRV 246 (368)
Q Consensus 189 l~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d-~f~~~m~~Fl~~a~~~l~~L~~~~~~~ 246 (368)
++.|...|..|...+..+...+.....-..| .-...+..=+..+...+..+...+..+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766322110011 112333334444445555555544443
No 15
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=23.69 E-value=3.1e+02 Score=22.62 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChh
Q 017608 190 DVLASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPL 269 (368)
Q Consensus 190 ~~l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~ 269 (368)
+.+.+.+..|+.-+..++..+-.-...|.......+..=+..|...+..++..+...+-.+++++.- |=..-. .-.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~--EL~~Vc--eEQ 99 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA--ELDKVC--EEQ 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH--HHHHHH--HHH
Confidence 3444555555555555555553333346667778888888889999999988888888888877742 000111 246
Q ss_pred chHHHHHHHHHHHHH
Q 017608 270 RIFVIVRDFLGMLDH 284 (368)
Q Consensus 270 ~fF~~~~~F~~~f~~ 284 (368)
.||..-.+++..++.
T Consensus 100 qfl~~QedL~~DL~e 114 (141)
T 3okq_A 100 QFLTLQEELILDLKE 114 (141)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788887777776653
No 16
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.22 E-value=3e+02 Score=22.00 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 017608 192 LASSVSNLKDGMAKLQHLLDLCIDEKSGNFVHSMNAFVKYAERNIKELQ 240 (368)
Q Consensus 192 l~~~~~~L~~~l~~~~~~l~~~~~~~~d~f~~~m~~Fl~~a~~~l~~L~ 240 (368)
+.+++..|.+.|..|++.+.......+...+..+..=++.-..++..|.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999888654433444443333333333334444443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.86 E-value=2.9e+02 Score=27.34 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q 017608 222 VHSMNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSK 263 (368)
Q Consensus 222 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~ 263 (368)
...++..++..+.++.++.++...+....+++..-+.++|..
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~ 587 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT 587 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 347888888999999999999999999999999999888754
No 18
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=21.11 E-value=2.5e+02 Score=20.51 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCcCChhchHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh
Q 017608 225 MNAFVKYAERNIKELQEDESRVFLHVREITEYFHGDVSKEEANPLRIFVIVRDFLGMLDHVCKELRNLKNYRDLAGMSIQ 304 (368)
Q Consensus 225 m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFgEd~~~~~~~~~~fF~~~~~F~~~f~~A~~e~~~~~~~~~~~~~~~q 304 (368)
|.............++..+..+......|....-+. ..+.|...+..+...+.+...-+.............++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~------a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~ 86 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGS------TFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIE 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSS------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444556666666666666776665332 14678888888888888877777776544333333333
No 19
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.00 E-value=3.1e+02 Score=21.68 Aligned_cols=25 Identities=4% Similarity=0.209 Sum_probs=16.8
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHh
Q 017608 186 TIDLDVLASSVSNLKDGMAKLQHLL 210 (368)
Q Consensus 186 ki~l~~l~~~~~~L~~~l~~~~~~l 210 (368)
..++.+|..++...+..|...+..+
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQKL 45 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQKV 45 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777666555444
Done!