BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017611
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S2T1|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana
GN=At2g17570 PE=2 SV=2
Length = 295
Score = 341 bits (874), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 180/353 (50%), Positives = 229/353 (64%), Gaps = 73/353 (20%)
Query: 16 TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISV 75
+QLLE + F RR LFRV+++GPIP H AFIMDGNRRYAKK + +G+GHK GFS+L+S+
Sbjct: 16 SQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLLDGSGHKAGFSALMSM 75
Query: 76 LKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135
L+YCYELG+KYVTIYAFSIDNF+RKP EV+++MDL+LEKI LL+++SIV+ YGIRVYFI
Sbjct: 76 LQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQYGIRVYFI 135
Query: 136 GNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195
GNL L++ VR AAE+VM ATA+NS+VVLL+C+AY N +DE
Sbjct: 136 GNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAY---------------NSTDE----- 175
Query: 196 ANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDG 255
V ++++SC K+ + + DI G +
Sbjct: 176 ---------------------IVQAVKKSCINKSDNIEASNYKHEDSDSDIEGTDM---- 210
Query: 256 VSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSG 315
E E+K I LVD+E++M M+VAP+PDIL+RSSG
Sbjct: 211 ----------------------ENQEKK------IQLVDIEENMQMSVAPNPDILIRSSG 242
Query: 316 ETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL 368
ETRLSNFLLWQT N L SPAALWPEIGL HL+WA+L FQRNHS+LEK+KKQL
Sbjct: 243 ETRLSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295
>sp|Q8W3U4|HRT2_HEVBR Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2
PE=1 SV=1
Length = 284
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/349 (46%), Positives = 211/349 (60%), Gaps = 82/349 (23%)
Query: 22 LGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81
LG +MR+ L+ +L GPIP H AFI+DGN R+AKK + EG GHK GF +L++VL YCYE
Sbjct: 15 LGKYMRKGLYSILTQGPIPTHIAFILDGNGRFAKKHKLPEGGGHKAGFLALLNVLTYCYE 74
Query: 82 LGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFL 141
LGVKY TIYAFSIDNF+RKP EVQ +M+L+LEKI ++ E+SI+N Y I V F+GNLK L
Sbjct: 75 LGVKYATIYAFSIDNFRRKPHEVQYVMNLMLEKIEGMIMEESIINAYDICVRFVGNLKLL 134
Query: 142 SEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSN 201
EP++ AA+++M ATA+NSK VLL+ + YTS DEIVH
Sbjct: 135 DEPLKTAADKIMRATAKNSKFVLLLAVCYTSTDEIVH----------------------- 171
Query: 202 GVINGAEKVEKIYSLTVPSIEESCKEK--ASRVCNGAIERVKGTEDINGATVCTDGVSCD 259
++EES K+K + +CN D NG C
Sbjct: 172 ------------------AVEESSKDKLKSDEICN----------DGNG--------DCV 195
Query: 260 YKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRL 319
K E E + E I LV++E++ Y + P PD+L+R+SGETRL
Sbjct: 196 IKIEEM------------EPYSE-------IKLVELERNTY--INPYPDVLIRTSGETRL 234
Query: 320 SNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQL 368
SN+LLWQT+NC+L SP ALWPEIGL H+VWAV+ QR++S+LEK K+ L
Sbjct: 235 SNYLLWQTTNCILYSPHALWPEIGLRHVVWAVINCQRHYSYLEKHKEYL 283
>sp|Q8LAR7|DDPS8_ARATH Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana
GN=At5g60510 PE=2 SV=2
Length = 272
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/188 (47%), Positives = 135/188 (71%), Gaps = 3/188 (1%)
Query: 16 TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEE-GAGHKEGFSSLIS 74
TQ+ +L S MR+ +F+VL VGPIP + +FIMDGNRR+AKK N+E AGH+ GF S+
Sbjct: 12 TQIFNALMSLMRKFIFKVLRVGPIPTNISFIMDGNRRFAKKRNLEGLDAGHRAGFISVKY 71
Query: 75 VLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIV-NLYGIRVY 133
+L+YC E+GV YVT+YAF +DNF+R P EV+ +MDL+LEK+ EL +Q++ N+ G+R+
Sbjct: 72 ILQYCKEIGVPYVTLYAFGMDNFKRGPEEVKCVMDLMLEKV-ELTIDQAVSGNMNGVRII 130
Query: 134 FIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLA 193
F G+L L+E R A +++M T N ++++VC+AY+++ EIVHAV++S KS
Sbjct: 131 FAGDLNSLNERFRAATKKLMELTEENRDLIVVVCVAYSTSVEIVHAVRDSCVRKSKTGDG 190
Query: 194 VNANQVSN 201
+A ++S+
Sbjct: 191 SSALELSD 198
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349
+ L D+E+ MY +V P PD+++R+ G RLSNF+ WQTS LL ALWPE+GLWHLVW
Sbjct: 194 LELSDIEECMYTSVVPVPDLVVRTGGGDRLSNFMTWQTSRALLHRTEALWPELGLWHLVW 253
Query: 350 AVLKFQRNHSFLEKKKK 366
A+LKFQR +L+KKKK
Sbjct: 254 AILKFQRMQDYLQKKKK 270
>sp|Q8LED0|DDPS7_ARATH Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana
GN=At5g60500 PE=2 SV=1
Length = 271
Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
Query: 16 TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLN-VEEGAGHKEGFSSLIS 74
T + +L S MR+ LFRVL VGPIP + +FIMDGNRR+AKK N + AGH+ GF S+
Sbjct: 11 THIFNALMSLMRKFLFRVLCVGPIPTNISFIMDGNRRFAKKHNLIGLDAGHRAGFISVKY 70
Query: 75 VLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIV-NLYGIRVY 133
+L+YC E+GV YVT++AF +DNF+R P EV+ +MDL+LEK+ EL +Q++ N+ G+R+
Sbjct: 71 ILQYCKEIGVPYVTLHAFGMDNFKRGPEEVKCVMDLMLEKV-ELAIDQAVSGNMNGVRII 129
Query: 134 FIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQES 183
F G+L L+E R A +++M T N ++++VC+AY+++ EIVHAV++S
Sbjct: 130 FAGDLDSLNEHFRAATKKLMELTEENRDLIVVVCVAYSTSLEIVHAVRKS 179
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 58/78 (74%)
Query: 289 IINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLV 348
++ L DVE+ MY ++ P PD+++R+ G RLSNF+ WQTS LL ALWPE+GLWHLV
Sbjct: 192 LLELSDVEECMYTSIVPVPDLVIRTGGGDRLSNFMTWQTSRSLLHRTEALWPELGLWHLV 251
Query: 349 WAVLKFQRNHSFLEKKKK 366
WA+LKFQR +L KKKK
Sbjct: 252 WAILKFQRMQDYLTKKKK 269
>sp|Q99KU1|DHDDS_MOUSE Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2
SV=1
Length = 333
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 97/159 (61%)
Query: 24 SFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELG 83
S R ++ GP+P H AFIMDGNRRYAKK VE GH +GF+ L L++C LG
Sbjct: 10 SLWERFCANIIKAGPVPKHIAFIMDGNRRYAKKCQVERQEGHTQGFNKLAETLRWCLNLG 69
Query: 84 VKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSE 143
+ VT+YAFSI+NF+R +EV L+DL +K + L++EQ + +G+ + +G+L L
Sbjct: 70 ILEVTVYAFSIENFKRSKSEVDGLLDLARQKFSCLMEEQEKLQKHGVCIRVLGDLHLLPL 129
Query: 144 PVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQE 182
++ + AT +K L VC AYTS EI +AV+E
Sbjct: 130 DLQEKIAHAIQATKNYNKCFLNVCFAYTSRHEIANAVRE 168
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 240 VKGTEDINGATVCTDGVSCDYKSEAQALRAGR-IGNGVTEGFEEKQGNNPIINLVDVEKH 298
++ T++ N C V Y S + A R + GV +G E + + ++K
Sbjct: 139 IQATKNYNK---CFLNVCFAYTSRHEIANAVREMAWGVEQGLLEPSDVSESL----LDKC 191
Query: 299 MYMAVAPDPDILMRSSGETRLSNFLLWQTSN-CLLDSPAALWPEIGLWHLVWAVLKFQRN 357
+Y +P PDIL+R+SGE RLS+FLLWQTS+ CL+ P LWPE W+L A+L+FQRN
Sbjct: 192 LYSNHSPHPDILIRTSGEVRLSDFLLWQTSHSCLVFQP-VLWPEYTFWNLCEAILQFQRN 250
Query: 358 HSFLEKKK 365
H L+K +
Sbjct: 251 HGALQKAR 258
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=1
SV=3
Length = 333
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 98/159 (61%)
Query: 24 SFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELG 83
S R ++ GP+P H AFIMDGNRRYAKK VE GH +GF+ L L++C LG
Sbjct: 10 SLWERFCANIIKAGPMPKHIAFIMDGNRRYAKKCQVERQEGHSQGFNKLAETLRWCLNLG 69
Query: 84 VKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSE 143
+ VT+YAFSI+NF+R +EV LMDL +K + L++E+ + +G+ + +G+L L
Sbjct: 70 ILEVTVYAFSIENFKRSKSEVDGLMDLARQKFSRLMEEKEKLQKHGVCIRVLGDLHLLPL 129
Query: 144 PVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQE 182
++ + + AT +K L VC AYTS EI +AV+E
Sbjct: 130 DLQELIAQAVQATKNYNKCFLNVCFAYTSRHEISNAVRE 168
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 272 IGNGVTE---GFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTS 328
I N V E G E+ + I+ ++K +Y +P PDIL+R+SGE RLS+FLLWQTS
Sbjct: 162 ISNAVREMAWGVEQGLLDPSDISESLLDKCLYTNRSPHPDILIRTSGEVRLSDFLLWQTS 221
Query: 329 N-CLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKK 365
+ CL+ P LWPE W+L A+L+FQ NHS L+K +
Sbjct: 222 HSCLVFQP-VLWPEYTFWNLFEAILQFQMNHSVLQKAR 258
>sp|Q9V157|UPPS_PYRAB Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
abyssi (strain GE5 / Orsay) GN=uppS PE=3 SV=1
Length = 264
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Query: 9 GAAATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEG 68
G + P + R L + G +P H A IMDGNRR+AKK GH G
Sbjct: 4 GILSHVPKIFFKPAYDLYERYLLEKVKAGVLPKHVAIIMDGNRRWAKKREKPPWYGHLFG 63
Query: 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLY 128
L +L++C+ELG++ +T+YAFS +NF+R EV+ LM L +K EL+ ++ V+ Y
Sbjct: 64 SKKLEEILEWCHELGIRILTVYAFSTENFKRSKEEVERLMQLFEQKFRELVTDKR-VHEY 122
Query: 129 GIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKS 188
G+RV IG + L + VR AAEE AT + + VL V +AY EIV AV++ ++
Sbjct: 123 GVRVNVIGRKELLPKSVRDAAEEAERATRKYNNYVLNVAIAYGGRSEIVDAVKDIVRDVM 182
Query: 189 DESLAV 194
D L V
Sbjct: 183 DGKLRV 188
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
++K++Y+ PDPDI++R+ GE R+SNFLL+Q + L +PE + + +F
Sbjct: 196 LKKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREF 255
Query: 355 QRN 357
Q+
Sbjct: 256 QKR 258
>sp|O14171|YE54_SCHPO Uncharacterized protein C4D7.04c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4D7.04c PE=3 SV=2
Length = 264
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 91/157 (57%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G +P H AF+MDGNRR+A++ +E GH GF +L S+LK C +LGVK V+ + FSI+N
Sbjct: 32 GKVPQHIAFVMDGNRRWARQRRMETIEGHSSGFEALKSLLKVCLKLGVKEVSAFTFSIEN 91
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
F+R EV LM++ + ++ +V+ YGIR+ +G+L L V A + + T
Sbjct: 92 FKRSKYEVDMLMEIAKNSLTQITAHGDLVDQYGIRIRIVGDLSRLQPDVLETALKAVEIT 151
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLA 193
N+K L VC YTS EI +VQ K D ++
Sbjct: 152 KHNTKATLNVCFPYTSRHEIATSVQSIVKMAEDGTIT 188
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 296 EKHMYMAVAPDPDILMRSSGETRLSNFLLWQT-SNCLLDSPAALWPEIGLWHLVWAVLKF 354
EK++ + + D+L+R+SG RLS+F+LWQ N + WP+ +W ++++
Sbjct: 198 EKNLLIKDSLPLDLLIRTSGVERLSDFMLWQCHKNTEIKFIDFYWPDFSIWKFFPMLIQY 257
Query: 355 Q 355
Q
Sbjct: 258 Q 258
>sp|P35196|RER2_YEAST Dehydrodolichyl diphosphate synthase RER2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RER2 PE=1
SV=1
Length = 286
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 8/149 (5%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H FIMDGNRR+A+K ++ GH+ GF S+ +L+ CYE GV T++AFSI+NF+
Sbjct: 31 VPRHVGFIMDGNRRFARKKEMDVKEGHEAGFVSMSRILELCYEAGVDTATVFAFSIENFK 90
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG----NLKFLSEPVRVAAEEVMM 154
R EV++LM L E+I ++ + + YG+R+ IG K L E VRVA E
Sbjct: 91 RSSREVESLMTLARERIRQITERGELACKYGVRIKIIGDLSLLDKSLLEDVRVAVE---- 146
Query: 155 ATARNSKVVLLVCLAYTSADEIVHAVQES 183
T N + L +C YT +EI+HA++E+
Sbjct: 147 TTKNNKRATLNICFPYTGREEILHAMKET 175
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 8/80 (10%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNC-----LLDSPAALWPEIGL 344
I+ +E H+Y A P D+L+R+SG +RLS+FL+WQ S+ LLD LWPE G
Sbjct: 185 IDESTLESHLYTAGVPPLDLLIRTSGVSRLSDFLIWQASSKGVRIELLD---CLWPEFGP 241
Query: 345 WHLVWAVLKFQRNHSFLEKK 364
+ W +LKF + SFL K+
Sbjct: 242 IRMAWILLKFSFHKSFLNKE 261
>sp|Q5JGE1|UPPS_PYRKO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=uppS PE=3 SV=1
Length = 264
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGNRR+A+KL GH G L +L++C EL ++ +T+YAFS +N
Sbjct: 32 GNIPKHVAIIMDGNRRWARKLEKPPWYGHLFGSKKLEEILEWCRELNIRTLTVYAFSTEN 91
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
F+R EV+ LM+L EK EL++++ V+ YGIRV +G L E VR AAEE AT
Sbjct: 92 FKRSKEEVEALMNLFEEKFKELVQDER-VHRYGIRVNVLGRKDMLPENVRKAAEEAERAT 150
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKN 186
+ S L + LAY EI AV+E ++
Sbjct: 151 RKYSNYNLNIALAYGGRSEIADAVREIVRD 180
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+++++Y PDPDI++R+ GE R+SNFLL+Q + L +PE + + +F
Sbjct: 196 IKRYLYYPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREF 255
Query: 355 QRNH 358
Q+
Sbjct: 256 QKRQ 259
>sp|O59258|UPPS_PYRHO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=uppS PE=3 SV=1
Length = 264
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 17/202 (8%)
Query: 12 ATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSS 71
+ P + R L + G +P H A IMDGNRR+A+K GH G
Sbjct: 7 SHIPKIFFKPAYDLYERYLIEKVKSGVLPKHVAIIMDGNRRWARKHEKPPWYGHLFGSKK 66
Query: 72 LISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIR 131
L +L++C+ELG++ +T+YAFS +NF+R EV LM L EK EL+ ++ V+ YG+R
Sbjct: 67 LEEILEWCHELGIRILTVYAFSTENFKRSKEEVDRLMKLFEEKFRELVTDKR-VHEYGVR 125
Query: 132 VYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDES 191
V IG + L + VR A EE AT + + +L V LAY EIV AV++
Sbjct: 126 VNVIGRKELLPKSVRDAVEEAERATRKYNNYILNVALAYGGRSEIVDAVKD--------- 176
Query: 192 LAVNANQVSNGVINGAEKVEKI 213
++ VI+G ++E+I
Sbjct: 177 -------IARDVISGKLRIEEI 191
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ +++Y+ PDPDI++R+ GE R+SNFLL+Q + L +PE + + +F
Sbjct: 196 LRRYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLRIIREF 255
Query: 355 QRN 357
Q+
Sbjct: 256 QKR 258
>sp|Q8U0I8|UPPS_PYRFU Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=uppS PE=3 SV=1
Length = 264
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 12 ATTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSS 71
+ P+ + R L + G IP H A IMDGNRR+A+K GH G
Sbjct: 7 SHIPSIFFKPAYDLYERYLLEKVKAGVIPKHVAIIMDGNRRWARKREKPPWYGHFFGSKK 66
Query: 72 LISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIR 131
L ++++C+ELG++ +T+YAFS +NF+R EV LM L EK EL+ ++ V+ YGIR
Sbjct: 67 LEEIVEWCHELGIRILTVYAFSTENFKRSKEEVDRLMKLFEEKFRELVTDRR-VHEYGIR 125
Query: 132 VYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDES 191
V +G + L + VR AAEE T + + L + LAY EIV A+++
Sbjct: 126 VNVMGRKELLPKNVREAAEEAERVTRKYNNYFLNIALAYGGRSEIVDAIKD--------- 176
Query: 192 LAVNANQVSNGVINGAEKVEKI 213
+ N V+ G K+E I
Sbjct: 177 -------IVNDVLEGRLKLEDI 191
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349
IN V K++Y+ PDPDI++R+ GE R+SNFLL+Q + L +PE +
Sbjct: 191 INEEIVRKYLYVPNMPDPDIVIRTGGEVRISNFLLYQIAYSELFFVDVYFPEFRKIDFLR 250
Query: 350 AVLKFQRN 357
+ +FQ+
Sbjct: 251 IIREFQKR 258
>sp|O87197|ISPT_THET2 Isoprenyl transferase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=uppS PE=3 SV=1
Length = 263
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89
L R + GP+P H I+DGNRRYA+ L + GH+ G VL++C E+G+K VT+
Sbjct: 20 LLREVKRGPMPRHLGLILDGNRRYARALGLSPTKGHEFGVQKAYEVLEWCLEMGIKTVTV 79
Query: 90 YAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAA 149
+ FS DNF+R P EV+ LM+L L + + ++ I+ + +RV FIG + S V A
Sbjct: 80 WVFSTDNFKRPPEEVETLMNLFLREAERMAEDHRILE-HQVRVRFIGRREGFSPEVVRAI 138
Query: 150 EEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEK 209
E + T + + L + L Y +EIV AV+ E+ ++ +V+ G + +
Sbjct: 139 ERLERRTEGHRGMFLNIALGYGGREEIVDAVKRLLLEA--EARGLSPKEVAEG-LTPEDI 195
Query: 210 VEKIYSLTVPS 220
+Y+ +P
Sbjct: 196 ARHLYTAGLPD 206
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
D+ +H+Y A PDPD ++R+SGE RLS FLLWQ++ LWPE
Sbjct: 194 DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEF 242
>sp|Q03175|SRT1_YEAST Dehydrodolichyl diphosphate synthase SRT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRT1 PE=1
SV=1
Length = 343
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Query: 26 MRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVK 85
++ L + L VGP+P H +FIMDGNRRYAK + GH+ G +L+++L C LGVK
Sbjct: 53 LQNILIKALRVGPVPEHVSFIMDGNRRYAKSRRLPVKKGHEAGGLTLLTLLYICKRLGVK 112
Query: 86 YVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVN--LYGIRVYFIGNLKFLSE 143
V+ YAFSI+NF R EV LM+L K++E K LYG ++ +G+ LS
Sbjct: 113 CVSAYAFSIENFNRPKEEVDTLMNLFTVKLDEFAKRAKDYKDPLYGSKIRIVGDQSLLSP 172
Query: 144 PVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNK-SDESLAVNANQVSNG 202
+R ++V T L +C YTS ++++H +++S ++ ++S +N + +N
Sbjct: 173 EMRKKIKKVEEITQDGDDFTLFICFPYTSRNDMLHTIRDSVEDHLENKSPRINIRKFTNK 232
Query: 203 VING 206
+ G
Sbjct: 233 MYMG 236
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 238 ERVKGTEDIN-GATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVE 296
+++K E+I T + Y S L I + V + E K +P IN+
Sbjct: 176 KKIKKVEEITQDGDDFTLFICFPYTSRNDMLHT--IRDSVEDHLENK---SPRINIRKFT 230
Query: 297 KHMYMAVAPDP-DILMRSSGETRLSNFLLWQT-SNCLLDSPAALWPEIGLWHLVWAVLKF 354
MYM + ++L+R+SG RLS+++LWQ N ++ LWP + + +LK+
Sbjct: 231 NKMYMGFHSNKCELLIRTSGHRRLSDYMLWQVHENATIEFSDTLWPNFSFFAMYLMILKW 290
Query: 355 ----------QRNHSFLEK 363
++NHS EK
Sbjct: 291 SFFSTIQKYNEKNHSLFEK 309
>sp|Q5SH15|ISPT_THET8 Isoprenyl transferase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=uppS PE=3 SV=1
Length = 263
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Query: 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89
L R + GP+P H I+DGNRRYA+ L + GH+ G VL++C E+G+K VT+
Sbjct: 20 LLREVKRGPMPRHLGLILDGNRRYARALGLSPTKGHEFGVQKAYEVLEWCLEMGIKTVTV 79
Query: 90 YAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAA 149
+ FS DNF+R P EV+ LM+L L + + ++ I+ + +RV FIG + S V A
Sbjct: 80 WVFSTDNFKRPPEEVETLMNLFLREAERMAEDHRILE-HQVRVRFIGRREGFSPEVVRAI 138
Query: 150 EEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEK 209
E + T + + L + + Y +EIV AV+ E+ ++ +V+ G + +
Sbjct: 139 ERLERRTEGHRGMFLNIAMGYGGREEIVDAVKRLLLEA--EARGLSPKEVAEG-LTPEDI 195
Query: 210 VEKIYSLTVPS 220
+Y+ +P
Sbjct: 196 ARHLYTAGLPD 206
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
D+ +H+Y A PDPD ++R+SGE RLS FLLWQ++ LWPE
Sbjct: 194 DIARHLYTAGLPDPDFIIRTSGEIRLSGFLLWQSAYSEFYFADVLWPEF 242
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3
SV=1
Length = 247
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 25 FMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGV 84
F L + L +P H IMDGN R+A+K + GHK G +++ V++ C ELG+
Sbjct: 4 FNEEKLIKKLDKTRLPQHVGIIMDGNGRWAQKRGMPRVYGHKAGVNAVREVIRSCRELGI 63
Query: 85 KYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEP 144
KY+T+YAFS +N++R EV LMDLL+E ++ KE +N + V FIG++ L E
Sbjct: 64 KYLTLYAFSTENWKRPKEEVDFLMDLLVEYLS---KEVDELNKNNVVVKFIGDISRLPEK 120
Query: 145 VRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQ 181
++ E+ T +N+ +V+ + L Y DEIV A Q
Sbjct: 121 CQIEIEKAQKLTEKNTGLVVNIALNYGGRDEIVKATQ 157
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ +H+Y A PDPD+++R+SGE RLSNFLLWQ++ L LWP+ HL+ A+L +
Sbjct: 178 ITQHLYTASQPDPDLIIRTSGEKRLSNFLLWQSAYSELWFTEVLWPDFKKRHLIEALLYY 237
Query: 355 Q-RNHSF 360
Q R F
Sbjct: 238 QTRKRRF 244
>sp|Q8GDY3|ISPT_HELMO Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
Length = 260
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 102/182 (56%), Gaps = 10/182 (5%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AK+ + AGH+ G SL VL+ C + + Y+T+YAFS +N++
Sbjct: 29 IPKHIAIIMDGNGRWAKRRGLPRVAGHRAGVESLRRVLEVCEDYNIAYLTVYAFSTENWK 88
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV L DLL+E ++ +E + ++ G+R+ IG ++ L R E+ + TA
Sbjct: 89 RPADEVNALFDLLVEYLH---RELNTLHSKGVRIRAIGKIEDLPGGPRRELEKAIAKTAN 145
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTV 218
N+++VL V L Y EIV AV+ + ++ VN +Q+ ++ + +Y+ V
Sbjct: 146 NTRLVLNVALNYGGRFEIVEAVKSIARLAAEGK--VNPDQIDEKYMS-----QYLYTADV 198
Query: 219 PS 220
P
Sbjct: 199 PD 200
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ +++Y A PDPD+L+R SGE RLSNFLLWQ++ + LWP+ G +V A++ +
Sbjct: 189 MSQYLYTADVPDPDLLIRPSGELRLSNFLLWQSAYTEIWVTPTLWPDFGRKEMVQAIVDY 248
Query: 355 Q-RNHSF 360
Q R+ F
Sbjct: 249 QGRDRRF 255
>sp|Q8XJQ9|ISPT_CLOPE Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type
A) GN=uppS PE=3 SV=1
Length = 253
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 10/188 (5%)
Query: 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAF 92
VL +P H A IMDGN R+AKK + GH+ G ++ +++K C +LGVKY+T+YAF
Sbjct: 17 VLIEDKMPKHIAIIMDGNGRWAKKRGLPRTMGHRAGVKTIKTIVKECDKLGVKYLTLYAF 76
Query: 93 SIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEV 152
S +N++R EV LM L++E I + E ++ G+RV IG+L E + A
Sbjct: 77 STENWKRPEDEVNALMKLVVEFIKNEIDE---LHQNGVRVQTIGDLSRFPEEPKKAILWA 133
Query: 153 MMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEK 212
M T N+ VVL + L Y +EIV ++ ++ V A ++S IN +
Sbjct: 134 MEKTKDNTGVVLSLALNYGGRNEIVRGIKSVIED-------VKAGKISIDDINEDMFNDY 186
Query: 213 IYSLTVPS 220
+Y+ +P
Sbjct: 187 LYTKGMPD 194
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 298 HMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ-R 356
++Y PDPD+++R SGE RLSNFLLWQ + WP+ L A+ +Q R
Sbjct: 186 YLYTKGMPDPDLIIRPSGEQRLSNFLLWQCAYSEFWYSQINWPDFNGEDLRKAIFDYQNR 245
Query: 357 NHSF 360
+ F
Sbjct: 246 DRRF 249
>sp|Q5V1I1|UPPS_HALMA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=uppS PE=3 SV=2
Length = 304
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 4/171 (2%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
P H A IMDGNRRYA+K ++ GHKEG + ++L +C ELG++ VT+Y FS +NF
Sbjct: 24 TPDHVAVIMDGNRRYAEKQGTKKQEGHKEGAQTTEALLNWCDELGIREVTLYTFSTENFD 83
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R P E +++ DL+ +K+ + V+ G+ + IG + L E VR A + TA+
Sbjct: 84 RDPEEREHIFDLVEQKLR-TFADADRVHEAGVCIRAIGETEMLPERVRDAIDYAEGRTAQ 142
Query: 159 NSKVVLLVCLAYTSADEIVHAVQE---SFKNKSDESLAVNANQVSNGVING 206
++ L + LAY E++ A ++ + +N++ + V+A + + G
Sbjct: 143 YDQLNLNIALAYGGRAELLGAARDVAAAVENETLDPTDVSAETIEERLYEG 193
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSN----CLLDSPAALWPEIGLWHLVWA 350
+E+ +Y D D+++R+ G+ R SNFL W + +P WPE + A
Sbjct: 186 IEERLYEGPTRDVDLIVRTGGDERTSNFLPWHANGNEAATFFCTP--YWPEFRKVDFLRA 243
Query: 351 VLKFQ 355
+ +Q
Sbjct: 244 IRTYQ 248
>sp|O29049|UPPS_ARCFU Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=uppS PE=3 SV=1
Length = 251
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89
L R + G IPHH A IMDGNRR+A+K +E GH G VL++C++LGVK +T+
Sbjct: 11 LLRSVRKGAIPHHIAIIMDGNRRFARKKGLEPHEGHFFGSKKAEEVLEWCWDLGVKMLTL 70
Query: 90 YAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAA 149
YAFS +NF+R E +N+ LL ++ LLK++ +RV +G + L E +R
Sbjct: 71 YAFSTENFRRSEKEKKNIFQLLESELRRLLKDRRTYER-ELRVKVVGKRELLPENLRETI 129
Query: 150 EEVMMATARNSKVVLLVCLAYTSADEIVHAVQ 181
+EV T ++ + L V +AY EI+ AV+
Sbjct: 130 KEVEERTKKHRRHYLNVAVAYGGRQEIIDAVR 161
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 25/144 (17%)
Query: 217 TVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276
T+ +EE K+ N A+ G D V LR R G
Sbjct: 128 TIKEVEERTKKHRRHYLNVAVA-------YGGRQEIIDAVRA-------ILRKVRKGEVR 173
Query: 277 TEGFEEKQGNNPIINLVDVEKHMY-MAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSP 335
E +EK +E+H+Y D+++R+ GE RLSNFL WQ +N +
Sbjct: 174 PEEIDEKM----------LEEHLYGEGRYSKVDLIIRTGGEQRLSNFLPWQAANSVAYFC 223
Query: 336 AALWPEIGLWHLVWAVLKFQRNHS 359
WPE L+ A+ +Q S
Sbjct: 224 DVYWPEFRKIDLLRAIRAWQYRKS 247
>sp|Q8TXA7|UPPS_METKA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=uppS PE=3 SV=1
Length = 271
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G +P H IMDGNRR+A++L +E GH+ G L VL++C +LGVK VT+YA S +N
Sbjct: 39 GRVPEHVGIIMDGNRRFARELGLEPWEGHRYGADKLEDVLEWCLDLGVKAVTVYALSTEN 98
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
R E++ L DL+ E+ L + + I + + V +G L L VR A ++ AT
Sbjct: 99 LNRPKEELKRLFDLMEERFKALAESERI-HRRKVAVRAVGRLHLLPTRVRRAIKKAERAT 157
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQE 182
L V +AY EI+ AV+E
Sbjct: 158 KEYKDRFLNVAVAYGGRQEIIDAVRE 183
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 297 KHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356
K++Y+ PDP++++R+SGE RLSNFLLW ++ L WPE L+ A+ +FQ+
Sbjct: 205 KYVYVGDLPDPELIIRTSGEERLSNFLLWYSAYSELYFVDVYWPEFRKIDLLRAIREFQK 264
Query: 357 N 357
Sbjct: 265 R 265
>sp|Q7NPE7|ISPT_GLOVI Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421)
GN=uppS PE=3 SV=1
Length = 249
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 13 TTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSL 72
TTP LL SL S L +P H A IMDGN R+A K N+ GH+ G S+L
Sbjct: 2 TTPHTLLRSLPS--------DLDPNRLPRHVAAIMDGNGRWASKRNLPRVMGHQAGVSAL 53
Query: 73 ISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRV 132
+L+ C + G+ +T+YAFS +N++R EV+ LM L + +N L E +V+ G+R+
Sbjct: 54 KELLRCCKDWGIGALTVYAFSTENWKRPQYEVEFLMALFEKVLNHELSE--MVD-EGVRI 110
Query: 133 YFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQE 182
F+G L L ++ A E M AT N+ V V Y EIV+A +E
Sbjct: 111 RFVGALAHLPGALQSAIEGAMAATEANTAVEFTVATNYGGRQEIVNACRE 160
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 264 AQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFL 323
A+ +R+GR+ + E +EK +H+Y DPD+L+R+SGE RLSN+L
Sbjct: 162 AEQVRSGRL---LPEQIDEKL----------FAQHLYTRELSDPDLLIRTSGEQRLSNYL 208
Query: 324 LWQTSNCLLDSPAALWPEI 342
LWQ + + LWP+
Sbjct: 209 LWQMAYTEIYVADVLWPDF 227
>sp|Q97I62|ISPT_CLOAB Isoprenyl transferase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=uppS PE=3 SV=1
Length = 257
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AKK N+ GHK G +L +++ C ++GVKY+T+Y FS +N+
Sbjct: 24 IPKHIAIIMDGNGRWAKKRNLPRTMGHKAGGEALKRIVRECSDIGVKYLTVYGFSTENWI 83
Query: 99 RKPAEVQNLMDLLLE----KINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMM 154
R EV +M L++E + NEL K I+N IGN+ L E A +
Sbjct: 84 RPKEEVNAIMRLIVEFLKREFNELNKNNVIINP-------IGNILGLPEACITALNDAKN 136
Query: 155 ATARNSKVVLLVCLAYTSADEIVHAVQESF 184
T N+ ++L + L Y DEI++AV+ F
Sbjct: 137 KTKNNTGLMLNLALNYGGRDEILNAVKNIF 166
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 281 EEKQGNNPIINLVDVE--KHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAAL 338
E K + I NL D E ++Y PDPDI++R SGE RLSNFLLWQ +
Sbjct: 171 ENKISKDEIFNLSDEEFSSYLYTGCIPDPDIIIRPSGEKRLSNFLLWQCAYSEFWYSNIN 230
Query: 339 WPEIGLWHLVWAVLKFQ-RNHSF 360
WP+ + L A+ +Q R+ F
Sbjct: 231 WPDFSIEDLHTAIKDYQNRDRRF 253
>sp|Q8YRL4|ISPT2_NOSS1 Isoprenyl transferase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS2 PE=3 SV=1
Length = 258
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+A + AGH++G +L +L+ C + G+K +T YAFS +N+Q
Sbjct: 23 IPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQ 82
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM LL E++ L +E S ++ G+R+ FIG+L L + ++ E M T
Sbjct: 83 RPIEEVDFLM-LLFERL--LRRELSQMHREGVRISFIGDLTALPKSLQTEMERSMTETLN 139
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVI 204
N + V + Y S +EI A ++ + L+ +A V+ G++
Sbjct: 140 NQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADA--VNEGIV 183
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 243 TEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMA 302
TE +N + V+ +Y S + RA R V E ++ + + +N VE+H+Y
Sbjct: 135 TETLNNQAIHFT-VAVNYGSRNEITRACR---QVAELVQQGKLSADAVNEGIVEQHLYTT 190
Query: 303 VAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356
PD+L+R+SGE RLSNFLLWQ + + LWP+ A+L +Q+
Sbjct: 191 DTQPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDREAFHQALLSYQK 244
>sp|Q732P6|ISPT_BACC1 Isoprenyl transferase OS=Bacillus cereus (strain ATCC 10987)
GN=uppS PE=3 SV=1
Length = 258
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGN R+AK+ + AGH EG + + K+ +L VK +T+YAFS +N
Sbjct: 27 GYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQVVKKITKFASKLNVKVLTLYAFSTEN 86
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
++R EV LM L E + L E N ++V IG L R A E+ M T
Sbjct: 87 WKRPKKEVDYLMKLPEEFLGTFLPELIEEN---VQVRVIGQQDRLPTHTRRAMEKAMEET 143
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
N+ ++L L Y S DEIV AVQ K++ + + V
Sbjct: 144 KENTGLILNFALNYGSRDEIVSAVQHMMKDREEGKVRV 181
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
PDP++L+R+SGE R+SNF+LWQ + WP+ HL+ A+ FQ
Sbjct: 199 PDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQ 249
>sp|Q98MB9|ISPT_RHILO Isoprenyl transferase OS=Rhizobium loti (strain MAFF303099) GN=uppS
PE=3 SV=1
Length = 244
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR 99
P H A IMDGN R+AK + AGH+ G +L ++ +LG+ ++T+YAFS +N+ R
Sbjct: 4 PAHVAIIMDGNGRWAKARGMPRLAGHRAGVEALRKTVRAAPDLGISFLTVYAFSSENWSR 63
Query: 100 KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARN 159
AEV +LM LL I L E ++ G+RV IG+ L +R EE TARN
Sbjct: 64 PKAEVSDLMGLLKLFIRRDLAE---LHQSGVRVRIIGDRAGLQADIRGLLEEAESLTARN 120
Query: 160 SKVVLLVCLAYTSADEIVHAVQE 182
+ L++ Y DEIV ++
Sbjct: 121 ESLTLVIAFNYGGRDEIVRTARK 143
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
PDP++++R+SGE RLSNFLLWQ + L WP+ HL A+ +F
Sbjct: 173 PDPELVIRTSGELRLSNFLLWQAAYSELVFLPCYWPDFSREHLAEALREF 222
>sp|Q819Y1|ISPT_BACCR Isoprenyl transferase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=uppS PE=3 SV=1
Length = 258
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGN R+AK+ + AGH EG + + K+ +L VK +T+YAFS +N
Sbjct: 27 GYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQVVKKITKFASKLNVKVLTLYAFSTEN 86
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
++R EV LM L E + L E N ++V IG L R A E+ M T
Sbjct: 87 WKRPKKEVDYLMKLPEEFLGTFLPELIEEN---VQVRVIGQKDRLPTHTRRAMEKAMEDT 143
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVIN 205
N+ ++L L Y S DEIV AVQ K+ +E + + +VS +++
Sbjct: 144 KENTGLILNFALNYGSRDEIVSAVQHMMKD--NEEGKIRSEEVSEEMLS 190
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
PDP++L+R+SGE R+SNF+LWQ + WP+ HL+ A+ FQ
Sbjct: 199 PDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFKEEHLLNAITDFQ 249
>sp|Q81WL2|ISPT_BACAN Isoprenyl transferase OS=Bacillus anthracis GN=uppS PE=3 SV=1
Length = 258
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGN R+AK+ + AGH EG + + K+ +L VK +T+YAFS +N
Sbjct: 27 GYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQVVKKITKFASKLNVKVLTLYAFSTEN 86
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
++R EV LM L E + L E N ++V IG L R A E+ M T
Sbjct: 87 WKRPKKEVDYLMQLPEEFLGTFLPELIEEN---VQVRVIGQQDRLPTHTRRAMEKAMEET 143
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
N+ ++L L Y S DEIV AVQ K+ + + V
Sbjct: 144 KENTGLILNFALNYGSRDEIVSAVQHMMKDSEEGKVRV 181
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
PDP++L+R+SGE R+SNF+LWQ + WP+ HL+ A+ FQ
Sbjct: 199 PDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQ 249
>sp|Q9HP68|UPPS_HALSA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=uppS PE=3 SV=1
Length = 302
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 16 TQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISV 75
T+L ++ + R L R + P H A I DGNRRYA++ + G++ G + V
Sbjct: 3 TRLWDAASAVYERLLTR--EIDGAPAHVAVIQDGNRRYAREHGDDPTDGYQSGARTTERV 60
Query: 76 LKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135
L++C +LGV+ +T+YAFS +NF+R P + Q+L DLL K+ E + V+ +R+ I
Sbjct: 61 LEWCSDLGVEELTLYAFSTENFERPPDQQQHLFDLLESKLRE-FADADRVHADRVRIRAI 119
Query: 136 GNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQ 181
G+ L + VR A TA L V LAY DE++ A +
Sbjct: 120 GDTGRLPQRVRDAITYAESRTAGYDGFTLNVALAYGGRDELLTAAR 165
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 256 VSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSG 315
V+ Y + L A R GV + + I+ +E ++ + D D+++R+ G
Sbjct: 150 VALAYGGRDELLTAAR---GVADAVAAGDLDPADIDAQAIESRLHTSPVRDVDLIIRTGG 206
Query: 316 ETRLSNFLLWQTSNCLLDSPAAL------WPEIGLWHLVWAVLKFQ-RNHSFLEKKKKQ 367
+ R SNFL W + S AA+ WPE L+ A+ ++ R S+ + + K+
Sbjct: 207 DERTSNFLPWHANG----SEAAVFFCTPYWPEFSKVDLLRAIRTYESRAASWRQTRAKR 261
>sp|Q6HEZ2|ISPT_BACHK Isoprenyl transferase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=uppS PE=3 SV=1
Length = 258
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGN R+AK+ + AGH EG + + K+ +L VK +T+YAFS +N
Sbjct: 27 GYIPEHIAIIMDGNGRWAKRRAMPRIAGHHEGMQVVKKITKFASKLNVKVLTLYAFSTEN 86
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
++R EV LM L E + L E N ++V IG L R A E+ M T
Sbjct: 87 WKRPKKEVDYLMKLPEEFLGTFLPELIEEN---VQVRVIGQQDRLPTHTRRAMEKAMEET 143
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
N+ ++L L Y S DEIV AVQ K+ + + V
Sbjct: 144 KENTGLILNFALNYGSRDEIVSAVQHMMKDSEEGKVRV 181
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
PDP++L+R+SGE R+SNF+LWQ + WP+ HL+ A+ FQ
Sbjct: 199 PDPELLIRTSGELRISNFMLWQIAYSEFWFTDVYWPDFTEEHLLNAITDFQ 249
>sp|Q8UFL9|ISPT_AGRT5 Isoprenyl transferase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=uppS PE=3 SV=1
Length = 247
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AK+ + GH+ G ++ ++ + G+ Y+T++AFS +N++
Sbjct: 9 IPEHVAIIMDGNGRWAKQRGLPRVMGHRRGVEAVRETVRAAGDCGISYLTLFAFSSENWR 68
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R +EV +LM LL I L E ++ +RV IG+ + L +R EE TA
Sbjct: 69 RPESEVSDLMGLLKAFIRRDLAE---LHRENVRVRIIGDRQGLKTDIRSLLEEAEQMTAG 125
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196
N+K+ L++ Y S DEI A ++ ++ L+ +A
Sbjct: 126 NTKLTLVIAFNYGSRDEITRATASIARDVAEGRLSADA 163
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 248 GATVCTDGVSCDYKSEAQALRA-GRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPD 306
G T T ++ +Y S + RA I V EG P + + + + PD
Sbjct: 125 GNTKLTLVIAFNYGSRDEITRATASIARDVAEGRLSADAITPEM----ISSRLDTSGMPD 180
Query: 307 PDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF-QRNHSF 360
PD+++R+SGE RLSNFLLWQ + WP+ A+ ++ R+ F
Sbjct: 181 PDLIIRTSGEERLSNFLLWQAAYSEFLFVPEYWPDFDRQRFFSAIEQYATRDRRF 235
>sp|Q9HXY2|UPPS_PSEAE Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=uppS PE=3 SV=1
Length = 251
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+AKK + AGHK G ++ +V++ C E GV+ +T++AFS +N+Q
Sbjct: 10 VPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQ 69
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM+L L L +E ++ GIR+ IG+ ++ A E ATA
Sbjct: 70 RPADEVSALMELFLVA---LRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAG 126
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVING 206
N++ +L V Y +IV A Q + LA A+ +S ++ G
Sbjct: 127 NTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLA--ADDISAELLQG 172
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKK 364
P PD+ +R+ GE R+SNFLLWQ + L WP+ + A+ F + K
Sbjct: 180 PLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKT 239
Query: 365 KKQL 368
+Q+
Sbjct: 240 SEQV 243
>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=uppS PE=3 SV=1
Length = 251
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 23/180 (12%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+AK+ N+ GH+ G +L +L+ C + G++ +T YAFS +N+
Sbjct: 22 LPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTAYAFSTENWG 81
Query: 99 RKPAEVQNLMDL----LLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMM 154
R EV+ LM L L ++ E++ E G++++F+G+L L + ++ E +
Sbjct: 82 RPLPEVEFLMTLFEQVLRRELGEMVAE-------GVQIHFVGDLTCLPKSLQAEIERAVA 134
Query: 155 ATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIY 214
ATA N K+ +V Y EI+HA + A QV G+++ A+ E ++
Sbjct: 135 ATANNQKIKFVVATNYGGRREIIHACRSI------------AAQVKAGLLDPADIDEVLF 182
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
I+ V E+H+Y PDPD+L+R+SGE R+SNF LWQ + + LWP+
Sbjct: 177 IDEVLFERHLYTGGLPDPDLLIRTSGELRISNFFLWQVAYAEIYVTKTLWPDF 229
>sp|Q895K8|ISPT_CLOTE Isoprenyl transferase OS=Clostridium tetani (strain Massachusetts /
E88) GN=uppS PE=3 SV=1
Length = 255
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 10/169 (5%)
Query: 34 LAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93
L + IP H A IMDGN R+AK+ + GHK G ++ ++K C +GV+Y+T+YAFS
Sbjct: 21 LDLDNIPKHIAIIMDGNGRWAKERKLPRSLGHKAGVETIRDIVKECNNIGVRYLTLYAFS 80
Query: 94 IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVM 153
+N++R E+ LM+LL +N L KE + ++ + V IG+ +S+ + +E+M
Sbjct: 81 TENWKRPKEEINALMELL---VNYLRKEVAELHQNNVVVNTIGD---VSKLPKACEDELM 134
Query: 154 MA---TARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV-NANQ 198
A T N+ +VL + L Y DEI+ A++ +K+ + L + N N+
Sbjct: 135 KAYNKTKNNTGLVLNLALNYGGRDEIIRAIKLMYKDIEKKGLDIENVNE 183
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
++ ++Y PDPD+++R SGE R+SNFLLWQ + WP+ HL A+ +
Sbjct: 186 LKNYLYTKGMPDPDLIIRPSGEQRISNFLLWQCAYSEFWYSNIKWPDFKKHHLHKAIKDY 245
Query: 355 Q-RNHSF 360
Q RN F
Sbjct: 246 QNRNRRF 252
>sp|O26334|UPPS_METTH Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific)
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=uppS PE=3 SV=1
Length = 255
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 32 RVLAVGPIPHHFAFIMDGNRRYAK-KLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIY 90
R L +P H A IMDGNRRY+K + ++ GHK+G +L VL +C +LG++ VT Y
Sbjct: 17 RNLRRDRMPRHVAIIMDGNRRYSKLQGSMNPIEGHKKGIETLEKVLDWCVDLGIEIVTAY 76
Query: 91 AFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAE 150
AFS +NF+R EV+ LM L E + + I + +RV +G L+ L E VR A E
Sbjct: 77 AFSTENFKRPEKEVKGLMKLFRENFEAIASNEKI-HKNRVRVRAVGKLELLPEDVRRAIE 135
Query: 151 EVMMATARNSKVVLLVCLAYTSADEIVHAVQE 182
+T + S ++ + + Y EIV A ++
Sbjct: 136 IAEKSTEQYSDRLVNIAIGYDGRQEIVDATRK 167
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ +++Y A DP +++R+SGE RLS FLLWQ+S L +LWPE+ + A+ +
Sbjct: 187 INRNLYTAGLEDPHLIIRTSGEERLSGFLLWQSSYSELYFCDSLWPELRKVDFLRAIRSY 246
Query: 355 QR 356
Q+
Sbjct: 247 QQ 248
>sp|Q8RE08|ISPT_FUSNN Isoprenyl transferase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=uppS PE=3 SV=1
Length = 230
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AKK + GH EG +L L+Y E+GVKY+T+YAFS +N+
Sbjct: 5 IPKHIAIIMDGNGRWAKKRGLARSFGHMEGAKTLRKALEYLTEIGVKYLTVYAFSTENWN 64
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM L L+ I E+ + IR + G + E ++ E++ T
Sbjct: 65 RPQDEVSTLMKLFLKYIK---NERKNMMKNKIRFFVSGRKNNVPEKLQKEIEKLEEETKN 121
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKN 186
N K+ L + Y S EIV AV K+
Sbjct: 122 NDKITLNIAFNYGSRAEIVDAVNRIIKD 149
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
D K++Y PDPD+++R+SGE R+SNFLLWQ + L LWP+
Sbjct: 158 DFSKYLYNDF-PDPDLVIRTSGEMRISNFLLWQIAYSELYITDVLWPDF 205
>sp|Q5L0J8|ISPT_GEOKA Isoprenyl transferase OS=Geobacillus kaustophilus (strain HTA426)
GN=uppS PE=3 SV=1
Length = 257
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97
P+P+H A IMDGN R+AKK + AGH EG + + ++ ELG++ +++YAFS +N+
Sbjct: 24 PMPNHVAIIMDGNGRWAKKRALPRAAGHYEGMQVVRKITRFANELGIQILSLYAFSTENW 83
Query: 98 QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
+R +EV LM L + + L E N ++V IG+ + L + R A E+ + T+
Sbjct: 84 KRPKSEVDYLMKLPEQFLTTFLPELVAEN---VKVQVIGHTEALPDHTRRAVEKAVKETS 140
Query: 158 RNSKVVLLVCLAYTSADEIVHAVQESFKN 186
N+ +VL L Y S EI AV++ K+
Sbjct: 141 GNTGLVLNFALNYGSRAEIAAAVKQIAKD 169
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 241 KGTEDINGATVCTDGVSCDYKSEAQ-ALRAGRIGNGVTEGFEEKQG-NNPIINLVDVEKH 298
K ++ +G T + +Y S A+ A +I V G + P+I+ +
Sbjct: 134 KAVKETSGNTGLVLNFALNYGSRAEIAAAVKQIAKDVERGMLAPEDITEPLIS-----SY 188
Query: 299 MYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356
+ + DPD+L+R+SGE RLSNF+LWQ + L LWP+ H + A+ +QR
Sbjct: 189 LMTSGLADPDLLIRTSGEIRLSNFMLWQLAYTELWFTDVLWPDFTEQHFLEAIAAYQR 246
>sp|Q6KZ89|UPPS_PICTO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=uppS PE=3 SV=1
Length = 255
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 21/199 (10%)
Query: 19 LESLGSFMRRC----LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLIS 74
+ +G+F+ R L + P+P H I DGNRRYA+ + + E GH +G L
Sbjct: 1 MSDIGNFVSRIYESKLLEEIKKHPVPGHLGIITDGNRRYARSIGISENEGHVKGKEKLEE 60
Query: 75 VLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF 134
VL + E+G+ VT+YAFS +NF+RK EV L +L+ + +LL ++ + GIRV
Sbjct: 61 VLNWSMEVGIHMVTVYAFSTENFKRKSDEVNFLFNLINDAFIDLLNDERVYK-NGIRVKV 119
Query: 135 IGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
IG++ L + ++ + V T + + + Y EI+ A++
Sbjct: 120 IGDISKLPDYLKETIKRVEGETNKFKNFRFNLAIGYGGRQEIIDAIK------------- 166
Query: 195 NANQVSNGVINGAEKVEKI 213
++ ++NG KV+ I
Sbjct: 167 ---KIGQDILNGKIKVDNI 182
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 298 HMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
++Y PDPD+++R+SGE R+SNFLLWQ++ L WPE+ + A+ +Q
Sbjct: 190 YLYDKTLPDPDLILRTSGEERISNFLLWQSAYSELYFADVNWPELRKIDFLRAIYSYQ 247
>sp|Q7NVZ0|ISPT_CHRVO Isoprenyl transferase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=uppS PE=3 SV=1
Length = 251
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 7/143 (4%)
Query: 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR 99
P H A IMDGN R+AKK + AGHK G ++ V+K C E+GV Y+T++AFS +N++R
Sbjct: 16 PRHIAIIMDGNGRWAKKRFLPRVAGHKRGLDAVREVVKACKEMGVGYLTLFAFSTENWRR 75
Query: 100 KPAEVQNLMDLLLEKINELLKEQSIVNLY--GIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
EV LMDL L + E + L+ IR+ +G+ + S + + TA
Sbjct: 76 PQEEVSFLMDLFLRAL-----EHEVAKLHNNNIRLKVLGSRERFSAELSERIDRAEAKTA 130
Query: 158 RNSKVVLLVCLAYTSADEIVHAV 180
N +VL + Y +IVHAV
Sbjct: 131 GNDGLVLTIAADYGGRWDIVHAV 153
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 225 CKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQ 284
+E+ S + I+R + N V T ++ DY + A + + EG E
Sbjct: 110 SRERFSAELSERIDRAEAKTAGNDGLVLT--IAADYGGRWDIVHA--VNRLIAEGRSE-- 163
Query: 285 GNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGL 344
I V + MA AP+PD+ +R+ GE R+SNFLLWQ + L LWP+
Sbjct: 164 -----ITEEMVTDRLGMAWAPEPDLFIRTGGEQRISNFLLWQLAYSELYFTDLLWPDFDR 218
Query: 345 WHLVWAVLKFQRNHSFLEKKKK 366
L A+ HS+ +++++
Sbjct: 219 AALQEAI------HSYWQRERR 234
>sp|Q8A1E0|ISPT_BACTN Isoprenyl transferase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=uppS
PE=3 SV=1
Length = 244
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AK+ E GH+ G ++ +++ LGVKY+T+Y FS +N+
Sbjct: 12 IPQHIAIIMDGNGRWAKQRGKERTYGHQAGAETVHKIIEDAARLGVKYLTLYTFSTENWN 71
Query: 99 RKPAEVQNLMDLLLEKINE--LLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
R EV LM+LL++ I E L+K IR IG++K L V+ + T
Sbjct: 72 RPQEEVAALMNLLVDSIEEETLMKN-------NIRFRIIGDIKKLPAEVQEGLSRCIEHT 124
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQE 182
A N+ L++ L+Y+S E+ AV++
Sbjct: 125 ANNTGTCLVLALSYSSRWEMTEAVRQ 150
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ H+ PDPD+L+R+ GE RLSN+LLWQ + L WP+ A+ ++
Sbjct: 170 ITAHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDKEEFCKAIYEY 229
Query: 355 QRNHSFLEKKKKQL 368
Q+ K +Q+
Sbjct: 230 QQRERRFGKTSEQI 243
>sp|Q6FCH1|UPPS_ACIAD Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Acinetobacter
sp. (strain ADP1) GN=uppS PE=3 SV=1
Length = 249
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 3/151 (1%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+AKK +++G GH+EG +SL ++++C GV+ +T++AFS +N+
Sbjct: 9 LPKHVAIIMDGNNRFAKKNQMQKGDGHREGKNSLDPIVEHCCTRGVQALTVFAFSSENWN 68
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM LL E I+E L N I + FIG+ LSE + TA
Sbjct: 69 RPAFEVDLLMKLLEEAIHEQLPRMRKFN---IALRFIGDRSKLSEHLTDLMTHAENETAH 125
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSD 189
+ + L + ++Y +I A ++ K+ SD
Sbjct: 126 FTSMTLTIAISYGGMWDITDAAKQIAKDVSD 156
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 283 KQGNNPIINLVDVEKHMY-----MAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAA 337
K ++ I+++ ++ H++ + P D+L+R+ G+ RLSNFLLWQ + L
Sbjct: 152 KDVSDGIVDIEQIDTHLFGRYVSLNQLPPVDLLIRTGGDYRLSNFLLWQAAYAELYFTET 211
Query: 338 LWPEIGL 344
LWPE +
Sbjct: 212 LWPEFSI 218
>sp|Q9HKQ0|UPPS_THEAC Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=uppS PE=3 SV=1
Length = 258
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Query: 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97
P P H I DGNRRYA+ + + E GH +G + V+ +C EL ++ VT YAFS +NF
Sbjct: 27 PRPRHIGIITDGNRRYARNVGISENEGHVKGKEKVEEVVDWCMELDIRIVTFYAFSTENF 86
Query: 98 QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
+R P EV L L+ LLK++ + I V IGNL L +R V T
Sbjct: 87 RRSPEEVDFLFHLIDNAFKSLLKDERVYK-NRINVKVIGNLSILPAYLRQTIHIVEETTK 145
Query: 158 RNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195
+ L + + Y +EI+ A++ ++ D L ++
Sbjct: 146 NFNNYQLNLAIGYGGREEILDAIKRITRDAMDGKLNID 183
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 290 INLVDVEK---HMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWH 346
I+ +D EK ++Y PDPD+++R+SGE R+SNFLLWQ++ L WPE
Sbjct: 182 IDELDEEKFRMYLYDGRIPDPDLILRTSGEERISNFLLWQSAYSELYFSDVYWPEFSKLD 241
Query: 347 LVWAVLKFQRNH 358
+ A+ +QR
Sbjct: 242 FLRAIYSYQRRQ 253
>sp|Q7VH74|ISPT_HELHP Isoprenyl transferase OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=uppS PE=3 SV=1
Length = 237
Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR 99
P H A IMDGN R+AKK + GHKEG + + ++C E G+ Y+T+YAFS +N++R
Sbjct: 6 PQHIAVIMDGNGRWAKKQGKKRTQGHKEGAKIVRDITQWCAEKGIPYLTLYAFSTENWKR 65
Query: 100 KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARN 159
EV LM LL + +++ E+ + IR IG++ + ++ A E+ AT +
Sbjct: 66 PKIEVDFLMKLLEKYLHD---EKPVYMKNHIRFRVIGDISVFNTRLKNAILELEHATQNH 122
Query: 160 SKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVP 219
+K+ ++ L Y S DEI + + +LA ++Q +IN + + T+P
Sbjct: 123 TKLTQILALNYGSRDEIARTFIKLAHTLTPHTLASLSSQDIISMINA-----NLDTATLP 177
Query: 220 SIE 222
++
Sbjct: 178 DVD 180
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 230 SRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAG-RIGNGVTEGFEEKQGNNP 288
+R+ N +E T++ T T ++ +Y S + R ++ + +T +
Sbjct: 106 TRLKNAILELEHATQN---HTKLTQILALNYGSRDEIARTFIKLAHTLTPHTLASLSSQD 162
Query: 289 IINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIG 343
II++++ ++ A PD D+L+R+ GE R+SNF+LWQ S L L+P G
Sbjct: 163 IISMINA--NLDTATLPDVDMLIRTGGEKRISNFMLWQASYAELFFTPTLFPSFG 215
>sp|Q8PZ76|UPPS_METMA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=uppS PE=3 SV=2
Length = 298
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGNRRYA +L GH G V+++CYE+GVK +T+YAFS +NFQ
Sbjct: 26 IPEHIAVIMDGNRRYAGQLGKARIFGHAMGAEVTEQVIEWCYEIGVKQLTLYAFSTENFQ 85
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV L +L+ EK +L ++ ++V IG+ L + + + + AT
Sbjct: 86 RSEEEVGGLFNLINEKFLKLHTDKRTYE-KEMQVRVIGDRTKLPAYLNESIDRIEKATEH 144
Query: 159 NSKVVLLVCLAYTSADEIVHAVQE 182
+ K L V +AY +I+ AV++
Sbjct: 145 HRKFSLNVAIAYGGRQDIMQAVRD 168
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 290 INLVDVEKHMYMAVA---PDPDILMRSSGETRLSNFLLWQT--SNCLLDSPAALWPEIGL 344
+N + KH+Y A P+ D+++R+ G+ R+SNFL WQ S C A WPE
Sbjct: 183 VNESLISKHLYPAPGVPVPNVDLIIRTGGDERISNFLPWQANGSECATYFCAPFWPEFRK 242
Query: 345 WHLVWAVLKFQ-------RNHSF 360
L+ +V +Q R HS+
Sbjct: 243 IDLLRSVRVYQARKEEKKREHSY 265
>sp|Q97B58|UPPS_THEVO Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=uppS PE=3 SV=1
Length = 258
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 77/144 (53%), Gaps = 1/144 (0%)
Query: 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97
P P H I DGNRRYA+ + + E GH +G + + VL +C EL +K VT YAFS +NF
Sbjct: 27 PRPRHVGIITDGNRRYARIVGIPENEGHVKGKNKVEEVLDWCMELDIKIVTFYAFSTENF 86
Query: 98 QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
+R P EV L L+ + LLK++ + I V IGN+ L E +R + T
Sbjct: 87 KRSPEEVDFLFHLINDAFISLLKDERVYK-NKINVKVIGNVSMLPEYLRETIKITEETTK 145
Query: 158 RNSKVVLLVCLAYTSADEIVHAVQ 181
S + + + Y +EI+ A++
Sbjct: 146 NFSNYHMNLAIGYGGREEILDAIK 169
>sp|Q73K76|ISPT_TREDE Isoprenyl transferase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=uppS PE=3 SV=1
Length = 227
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 6/159 (3%)
Query: 42 HFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP 101
H A +MDGN R+AKK + GHKEG +++ + K +LG+ Y+T+Y FS +N++R
Sbjct: 7 HIAIVMDGNGRWAKKRGLPRSMGHKEGLNTVKRITKAVSDLGIPYITLYIFSTENWKRTE 66
Query: 102 AEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSK 161
AEV LM L+ + + LK + N IR+ IGNL L + ++ V T+ +
Sbjct: 67 AEVGFLMGLIKQHLKAELKFYADNN---IRIEHIGNLSGLPQDIQDEINSVRDKTSAYTG 123
Query: 162 VVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVS 200
+++ + Y + DEI+ A++ K SDE ++N S
Sbjct: 124 TAIVLGINYGAHDEILRAIK---KLNSDELASINEESFS 159
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF-QRNHSF 360
P D+L+R+ GE RLSNFLLWQ++ L LWP+ + +L A+ + +RN +
Sbjct: 168 PPVDLLIRTGGEKRLSNFLLWQSAYAELYFTDTLWPDWTVENLYEAIEDYKKRNRRY 224
>sp|Q8TJQ7|UPPS_METAC Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific) OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=uppS PE=3 SV=1
Length = 298
Score = 91.7 bits (226), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGNRRYA + GH G V+++CYE+GVK +T+YAFS +NFQ
Sbjct: 26 IPDHIAVIMDGNRRYAGQRGRTRSFGHAMGAEVTEQVIEWCYEIGVKELTLYAFSTENFQ 85
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV L +L+ EK +L ++ ++ IG+ L + + E++ AT
Sbjct: 86 RSEEEVDGLFNLINEKFLKLYNDKRTYE-KETQIRVIGDRTKLPAFLNKSIEKIEKATET 144
Query: 159 NSKVVLLVCLAYTSADEIVHAVQE 182
+ K L V +AY +I+ AV++
Sbjct: 145 HRKFNLNVAIAYGGRQDIMQAVRD 168
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 295 VEKHMYMAVA---PDPDILMRSSGETRLSNFLLWQT--SNCLLDSPAALWPEIGLWHLVW 349
+ KH+Y A P+ D+++R+ G+ R+SNFL WQ S C A WPE L+
Sbjct: 188 ISKHLYPAPGVSVPNVDLIVRTGGDERVSNFLPWQANGSECATYFCAPFWPEFRKIDLLR 247
Query: 350 AVLKFQ 355
++ +Q
Sbjct: 248 SIRVYQ 253
>sp|O82827|UPPS_MICLU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=uppS PE=1 SV=1
Length = 249
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AK+ + GH EG ++ + +Y +LGVKY+T+YAFS +N+
Sbjct: 20 IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVKKITRYASDLGVKYLTLYAFSTENWS 79
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM L + +N L E N ++V IG + L + + A E T
Sbjct: 80 RPKDEVNYLMKLPGDFLNTFLPELIEKN---VKVETIGFIDDLPDHTKKAVLEAKEKTKH 136
Query: 159 NSKVVLLVCLAYTSADEIVHAVQ 181
N+ + L+ L Y EI+ AVQ
Sbjct: 137 NTGLTLVFALNYGGRKEIISAVQ 159
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 297 KHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356
++++ A PDP++L+R+SGE RLSNFL+WQ S WP+ L + +Q
Sbjct: 182 EYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQN 241
Query: 357 NH 358
H
Sbjct: 242 RH 243
>sp|Q8F144|ISPT_LEPIN Isoprenyl transferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=uppS
PE=3 SV=1
Length = 241
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+A GH+EG ++ ++ ELG+K +++YAFS +N++
Sbjct: 8 LPKHIAVIMDGNGRWATSRGKSRSEGHREGAQAIDRLMDASLELGLKNISLYAFSTENWK 67
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R E++++ LL+E I L ++ GIR+ G+ K L+ V + + T +
Sbjct: 68 RPVTEIRSIFSLLIEFIETRL---DTIHKRGIRILHSGSRKKLTRGVLDKIDFAVDKTQK 124
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
N + + CL Y S DE++ A QE F + +A+
Sbjct: 125 NKNLTVNFCLNYGSRDELLRAAQELFLERKRSKVAL 160
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
+ EK +Y ++ P D+L+R++GE RLSNFLLWQ++ L LWPE
Sbjct: 168 EFEKFLYTSILPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPEF 216
>sp|Q72U10|ISPT_LEPIC Isoprenyl transferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=uppS PE=3 SV=1
Length = 241
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+A GH+EG ++ ++ ELG+K +++YAFS +N++
Sbjct: 8 LPKHIAVIMDGNGRWATSRGKSRSEGHREGAQAIDRLMDASLELGLKNISLYAFSTENWK 67
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R E++++ LL+E I L ++ GIR+ G+ K L+ V + + T +
Sbjct: 68 RPVTEIRSIFSLLIEFIETRL---DTIHKRGIRILHSGSRKKLTRGVLDKIDFAVDKTQK 124
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
N + + CL Y S DE++ A QE F + +A+
Sbjct: 125 NKNLTVNFCLNYGSRDELLRAAQELFLERKRSKVAL 160
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
+ EK +Y ++ P D+L+R++GE RLSNFLLWQ++ L LWPE
Sbjct: 168 EFEKFLYTSILPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPEF 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,927,064
Number of Sequences: 539616
Number of extensions: 5509854
Number of successful extensions: 15635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 15061
Number of HSP's gapped (non-prelim): 452
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)