Query 017611
Match_columns 368
No_of_seqs 182 out of 1086
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14837 undecaprenyl pyrophos 100.0 1.5E-90 3.2E-95 651.4 26.9 229 35-363 2-230 (230)
2 PRK14842 undecaprenyl pyrophos 100.0 8.3E-90 1.8E-94 650.3 27.2 235 34-364 3-238 (241)
3 KOG1602 Cis-prenyltransferase 100.0 1.7E-89 3.6E-94 648.1 28.1 257 15-367 14-270 (271)
4 PRK14832 undecaprenyl pyrophos 100.0 1.6E-89 3.4E-94 652.2 26.3 238 33-366 12-249 (253)
5 PRK14835 undecaprenyl pyrophos 100.0 4E-89 8.6E-94 656.1 28.2 261 13-363 15-275 (275)
6 TIGR00055 uppS undecaprenyl di 100.0 3.8E-89 8.3E-94 640.6 25.9 226 41-362 1-226 (226)
7 PRK14833 undecaprenyl pyrophos 100.0 6.9E-89 1.5E-93 641.4 27.2 233 36-365 1-233 (233)
8 PRK14838 undecaprenyl pyrophos 100.0 6E-89 1.3E-93 644.8 26.2 237 33-367 4-240 (242)
9 PRK14840 undecaprenyl pyrophos 100.0 1.5E-88 3.2E-93 644.5 27.1 238 30-363 9-250 (250)
10 PRK14828 undecaprenyl pyrophos 100.0 4.9E-88 1.1E-92 643.1 29.4 254 15-363 2-256 (256)
11 PRK14831 undecaprenyl pyrophos 100.0 2.1E-88 4.5E-93 643.5 26.0 238 30-363 11-248 (249)
12 PTZ00349 dehydrodolichyl dipho 100.0 6.2E-88 1.4E-92 657.2 29.2 294 23-358 3-308 (322)
13 PRK14841 undecaprenyl pyrophos 100.0 4.2E-88 9E-93 636.1 26.9 229 38-364 2-230 (233)
14 PRK14829 undecaprenyl pyrophos 100.0 5.5E-88 1.2E-92 638.6 26.1 235 33-363 8-242 (243)
15 PRK14836 undecaprenyl pyrophos 100.0 4.6E-88 1E-92 642.4 24.8 239 32-366 7-245 (253)
16 PRK14834 undecaprenyl pyrophos 100.0 6.1E-87 1.3E-91 633.4 27.1 237 32-364 7-243 (249)
17 PRK14830 undecaprenyl pyrophos 100.0 7E-87 1.5E-91 633.7 26.9 236 32-363 15-250 (251)
18 PRK14839 undecaprenyl pyrophos 100.0 6.3E-87 1.4E-91 629.4 25.9 223 38-365 8-230 (239)
19 PRK14827 undecaprenyl pyrophos 100.0 5.7E-87 1.2E-91 646.2 26.2 242 26-363 54-295 (296)
20 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 6.4E-84 1.4E-88 603.5 25.8 221 40-356 1-221 (221)
21 COG0020 UppS Undecaprenyl pyro 100.0 3.6E-82 7.9E-87 599.5 25.3 230 38-363 15-244 (245)
22 PRK10240 undecaprenyl pyrophos 100.0 1E-81 2.2E-86 591.5 25.0 223 47-365 1-223 (229)
23 PF01255 Prenyltransf: Putativ 100.0 1.5E-81 3.2E-86 586.3 21.8 223 46-363 1-223 (223)
24 KOG2818 Predicted undecaprenyl 99.3 4E-12 8.7E-17 122.0 8.8 77 286-363 187-263 (263)
25 PF01261 AP_endonuc_2: Xylose 86.2 4.1 8.9E-05 35.6 8.0 116 65-186 66-185 (213)
26 PRK09856 fructoselysine 3-epim 85.2 20 0.00044 33.7 12.7 109 64-183 84-199 (275)
27 PRK13210 putative L-xylulose 5 77.5 32 0.00068 32.4 11.0 65 65-136 89-153 (284)
28 PF03851 UvdE: UV-endonuclease 74.5 43 0.00094 33.2 11.4 115 66-186 41-172 (275)
29 TIGR00629 uvde UV damage endon 72.7 50 0.0011 33.4 11.4 116 67-188 49-183 (312)
30 PF02739 5_3_exonuc_N: 5'-3' e 72.2 22 0.00049 32.3 8.2 81 40-140 51-137 (169)
31 PRK13209 L-xylulose 5-phosphat 72.1 48 0.001 31.3 10.8 66 63-136 92-158 (283)
32 cd00019 AP2Ec AP endonuclease 65.9 74 0.0016 30.1 10.7 65 63-135 78-142 (279)
33 TIGR03249 KdgD 5-dehydro-4-deo 64.1 58 0.0013 31.8 9.8 103 69-187 25-129 (296)
34 cd07947 DRE_TIM_Re_CS Clostrid 62.0 57 0.0012 32.1 9.3 85 77-171 81-174 (279)
35 TIGR00542 hxl6Piso_put hexulos 61.4 61 0.0013 30.8 9.2 66 64-136 88-153 (279)
36 PF07894 DUF1669: Protein of u 60.7 32 0.00069 34.4 7.3 78 27-139 136-215 (284)
37 PF13788 DUF4180: Domain of un 59.7 70 0.0015 27.9 8.4 80 70-167 22-103 (113)
38 smart00518 AP2Ec AP endonuclea 56.0 1.8E+02 0.0039 27.3 12.1 85 72-170 12-107 (273)
39 cd00950 DHDPS Dihydrodipicolin 53.7 1.5E+02 0.0032 28.4 10.5 103 69-186 20-124 (284)
40 TIGR00674 dapA dihydrodipicoli 52.5 1.6E+02 0.0036 28.4 10.7 105 68-187 17-123 (285)
41 cd00951 KDGDH 5-dehydro-4-deox 51.8 1.2E+02 0.0026 29.5 9.6 105 67-187 18-124 (289)
42 PLN02417 dihydrodipicolinate s 51.8 1.4E+02 0.003 29.0 10.0 103 68-186 20-125 (280)
43 PF01661 Macro: Macro domain; 51.6 32 0.00069 27.8 4.8 95 7-108 11-118 (118)
44 COG1082 IolE Sugar phosphate i 49.7 1.3E+02 0.0027 28.0 9.1 114 64-185 78-197 (274)
45 TIGR03234 OH-pyruv-isom hydrox 49.2 1.3E+02 0.0028 28.0 9.1 62 67-135 81-142 (254)
46 smart00633 Glyco_10 Glycosyl h 48.2 2.5E+02 0.0054 26.7 11.5 53 67-120 13-68 (254)
47 cd00008 53EXOc 5'-3' exonuclea 48.2 25 0.00055 33.5 4.3 90 30-140 41-136 (240)
48 cd00418 GlxRS_core catalytic c 48.0 20 0.00043 34.6 3.5 58 27-85 126-186 (230)
49 PF00701 DHDPS: Dihydrodipicol 47.4 2.4E+02 0.0053 27.1 10.9 103 68-187 20-126 (289)
50 PRK09989 hypothetical protein; 47.0 1.7E+02 0.0036 27.5 9.5 63 67-136 82-144 (258)
51 PRK09997 hydroxypyruvate isome 46.6 96 0.0021 29.1 7.9 59 70-135 85-143 (258)
52 PRK03620 5-dehydro-4-deoxygluc 42.1 2.2E+02 0.0048 28.0 9.9 105 67-187 25-131 (303)
53 cd07948 DRE_TIM_HCS Saccharomy 41.0 1.9E+02 0.0041 28.1 9.1 95 76-185 77-181 (262)
54 PRK14976 5'-3' exonuclease; Pr 41.0 86 0.0019 30.9 6.8 91 29-140 45-141 (281)
55 COG1878 Kynurenine formamidase 40.4 42 0.00091 32.2 4.4 80 43-143 109-189 (218)
56 cd00954 NAL N-Acetylneuraminic 39.9 3.5E+02 0.0075 26.2 10.8 103 69-187 20-126 (288)
57 PRK03170 dihydrodipicolinate s 39.7 2.3E+02 0.0051 27.3 9.5 105 67-187 19-126 (292)
58 cd03770 SR_TndX_transposase Se 39.3 2.4E+02 0.0053 24.3 8.7 71 72-158 24-97 (140)
59 TIGR02629 L_rham_iso_rhiz L-rh 37.8 74 0.0016 33.5 6.0 82 37-121 87-200 (412)
60 cd03770 SR_TndX_transposase Se 37.6 1.1E+02 0.0024 26.4 6.3 54 66-137 54-107 (140)
61 cd00408 DHDPS-like Dihydrodipi 37.6 2E+02 0.0043 27.4 8.6 105 68-187 16-122 (281)
62 TIGR00593 pola DNA polymerase 36.8 1E+02 0.0022 35.4 7.4 74 30-115 40-119 (887)
63 TIGR01766 tspaseT_teng_C trans 36.7 65 0.0014 25.1 4.3 27 65-91 51-78 (82)
64 PRK01060 endonuclease IV; Prov 36.4 1.6E+02 0.0034 27.8 7.6 62 65-135 84-145 (281)
65 cd00808 GluRS_core catalytic c 35.7 38 0.00082 32.8 3.3 58 27-85 135-195 (239)
66 PRK09482 flap endonuclease-lik 35.5 59 0.0013 31.9 4.6 96 21-139 30-134 (256)
67 TIGR03586 PseI pseudaminic aci 34.5 2.3E+02 0.0049 28.8 8.8 90 63-186 70-159 (327)
68 PF13302 Acetyltransf_3: Acety 33.9 78 0.0017 25.7 4.6 35 61-96 94-129 (142)
69 COG1022 FAA1 Long-chain acyl-C 33.8 93 0.002 34.3 6.3 89 3-138 36-126 (613)
70 PRK13397 3-deoxy-7-phosphohept 33.8 2.9E+02 0.0062 27.2 9.0 84 68-186 64-148 (250)
71 TIGR03521 GldG gliding-associa 33.4 4.1E+02 0.009 28.6 11.0 51 85-144 48-98 (552)
72 cd07945 DRE_TIM_CMS Leptospira 32.5 3.7E+02 0.008 26.4 9.7 97 76-186 80-188 (280)
73 cd02903 Macro_BAL_like Macro d 32.0 93 0.002 27.0 4.9 40 70-109 92-131 (137)
74 TIGR00538 hemN oxygen-independ 31.9 1.3E+02 0.0028 31.3 6.7 31 67-97 215-245 (455)
75 cd02905 Macro_GDAP2_like Macro 31.2 1.5E+02 0.0033 26.1 6.2 40 70-109 94-133 (140)
76 PHA02567 rnh RnaseH; Provision 30.9 2.7E+02 0.0058 28.3 8.5 83 37-140 60-158 (304)
77 PRK12677 xylose isomerase; Pro 30.5 6.2E+02 0.013 26.1 12.8 91 71-171 32-138 (384)
78 PRK08207 coproporphyrinogen II 30.4 1E+02 0.0022 32.8 5.7 52 66-117 332-394 (488)
79 PRK13505 formate--tetrahydrofo 30.2 4E+02 0.0087 29.3 10.1 99 60-187 349-456 (557)
80 PLN03044 GTP cyclohydrolase I; 30.0 46 0.001 31.3 2.8 27 41-81 87-113 (188)
81 COG1082 IolE Sugar phosphate i 29.9 4.2E+02 0.009 24.5 9.2 103 68-186 13-134 (274)
82 cd02908 Macro_Appr_pase_like M 29.8 1.9E+02 0.0041 25.8 6.6 46 70-115 92-138 (165)
83 PRK00164 moaA molybdenum cofac 29.6 5.1E+02 0.011 25.3 10.2 54 67-136 141-194 (331)
84 PRK08508 biotin synthase; Prov 29.3 1.3E+02 0.0027 29.3 5.8 24 64-87 160-183 (279)
85 PRK05481 lipoyl synthase; Prov 29.0 1.1E+02 0.0025 30.0 5.5 31 64-94 205-235 (289)
86 COG1856 Uncharacterized homolo 28.6 4.2E+02 0.0091 26.4 9.1 106 67-187 95-218 (275)
87 TIGR00063 folE GTP cyclohydrol 28.4 44 0.00096 31.2 2.4 26 41-81 82-107 (180)
88 smart00518 AP2Ec AP endonuclea 28.2 5E+02 0.011 24.3 10.1 61 64-134 78-138 (273)
89 PRK13347 coproporphyrinogen II 28.1 1.6E+02 0.0034 30.7 6.6 31 67-97 216-246 (453)
90 PRK09347 folE GTP cyclohydrola 27.5 53 0.0012 30.9 2.8 26 41-81 90-115 (188)
91 PF02472 ExbD: Biopolymer tran 27.1 1.8E+02 0.0038 24.2 5.7 47 27-89 79-125 (130)
92 PRK04147 N-acetylneuraminate l 26.7 5.2E+02 0.011 25.1 9.5 103 69-187 23-129 (293)
93 COG0369 CysJ Sulfite reductase 25.5 3E+02 0.0066 30.3 8.4 86 79-185 493-578 (587)
94 cd00642 GTP_cyclohydro1 GTP cy 25.5 51 0.0011 30.9 2.2 26 41-81 87-112 (185)
95 PLN02706 glucosamine 6-phospha 25.4 80 0.0017 26.5 3.3 35 61-96 96-130 (150)
96 TIGR02452 conserved hypothetic 25.3 3E+02 0.0064 27.3 7.6 71 40-110 159-232 (266)
97 TIGR02313 HpaI-NOT-DapA 2,4-di 25.2 6.5E+02 0.014 24.6 10.4 105 68-187 19-125 (294)
98 cd03330 Macro_2 Macro domain, 25.1 1.7E+02 0.0037 24.8 5.3 42 70-111 90-131 (133)
99 cd03767 SR_Res_par Serine reco 25.1 3.5E+02 0.0077 23.5 7.4 29 72-100 18-48 (146)
100 PRK12677 xylose isomerase; Pro 24.9 2.8E+02 0.0061 28.6 7.6 66 66-135 110-178 (384)
101 COG0635 HemN Coproporphyrinoge 24.6 1.6E+02 0.0035 30.6 5.9 30 69-98 203-232 (416)
102 cd03768 SR_ResInv Serine Recom 24.5 3.8E+02 0.0083 21.9 7.2 51 66-137 42-92 (126)
103 cd04301 NAT_SF N-Acyltransfera 24.3 80 0.0017 20.8 2.6 28 62-89 37-64 (65)
104 cd00953 KDG_aldolase KDG (2-ke 24.1 5.6E+02 0.012 24.8 9.3 101 67-185 17-120 (279)
105 smart00729 Elp3 Elongator prot 23.8 2.4E+02 0.0051 24.2 6.0 15 69-83 135-149 (216)
106 cd00477 FTHFS Formyltetrahydro 23.8 4.4E+02 0.0096 28.8 9.0 106 60-187 333-439 (524)
107 PLN02746 hydroxymethylglutaryl 23.3 2.5E+02 0.0055 28.7 6.9 96 77-186 128-238 (347)
108 PRK08208 coproporphyrinogen II 23.2 3.3E+02 0.0072 28.1 7.9 50 67-116 205-261 (430)
109 PRK13745 anaerobic sulfatase-m 23.2 6.3E+02 0.014 25.9 9.8 96 66-181 47-143 (412)
110 PRK13507 formate--tetrahydrofo 23.2 5E+02 0.011 28.8 9.3 106 60-187 378-484 (587)
111 PF14871 GHL6: Hypothetical gl 23.2 86 0.0019 27.6 3.1 28 69-96 43-70 (132)
112 COG0426 FpaA Uncharacterized f 22.9 8.6E+02 0.019 25.6 10.7 51 134-186 302-355 (388)
113 TIGR00683 nanA N-acetylneurami 22.7 7.2E+02 0.016 24.2 10.4 103 68-186 19-125 (290)
114 cd02906 Macro_1 Macro domain, 22.5 1.9E+02 0.0041 25.6 5.2 39 70-108 104-142 (147)
115 COG0041 PurE Phosphoribosylcar 22.5 5.1E+02 0.011 24.2 8.0 68 42-143 4-73 (162)
116 PF08901 DUF1847: Protein of u 22.4 49 0.0011 30.6 1.4 45 48-94 20-64 (157)
117 TIGR02635 RhaI_grampos L-rhamn 22.4 4.2E+02 0.0091 27.5 8.4 78 51-134 75-175 (378)
118 COG0678 AHP1 Peroxiredoxin [Po 22.2 53 0.0011 30.5 1.6 22 41-62 98-119 (165)
119 PHA00439 exonuclease 22.2 3.4E+02 0.0073 27.3 7.4 94 26-140 48-149 (286)
120 smart00281 LamB Laminin B doma 22.1 1.5E+02 0.0032 25.7 4.4 49 304-353 40-98 (127)
121 PRK05799 coproporphyrinogen II 21.6 2.6E+02 0.0057 28.0 6.6 29 67-95 163-191 (374)
122 PRK08446 coproporphyrinogen II 21.5 1.6E+02 0.0034 29.6 5.0 27 68-94 163-189 (350)
123 PF01227 GTP_cyclohydroI: GTP 21.5 57 0.0012 30.5 1.7 26 41-81 82-107 (179)
124 PRK09249 coproporphyrinogen II 21.4 2.2E+02 0.0048 29.6 6.2 27 67-93 215-241 (453)
125 TIGR03569 NeuB_NnaB N-acetylne 21.2 6E+02 0.013 25.8 9.1 85 67-185 73-157 (329)
126 PRK12595 bifunctional 3-deoxy- 21.2 5.3E+02 0.012 26.4 8.8 110 67-186 129-251 (360)
127 PF00763 THF_DHG_CYH: Tetrahyd 21.2 5.2E+02 0.011 22.0 10.9 72 18-108 8-79 (117)
128 TIGR00513 accA acetyl-CoA carb 21.0 1E+02 0.0022 31.4 3.5 27 65-91 133-159 (316)
129 TIGR03822 AblA_like_2 lysine-2 20.9 4.6E+02 0.0099 26.1 8.1 42 69-111 213-254 (321)
130 PRK09389 (R)-citramalate synth 20.8 1E+03 0.023 25.3 11.7 94 76-184 79-182 (488)
131 PRK12319 acetyl-CoA carboxylas 20.7 1.1E+02 0.0023 30.1 3.5 27 65-91 80-106 (256)
132 TIGR02631 xylA_Arthro xylose i 20.6 8.2E+02 0.018 25.2 10.0 115 66-184 111-234 (382)
133 PRK12606 GTP cyclohydrolase I; 20.5 87 0.0019 29.8 2.8 26 41-81 102-127 (201)
134 PF10566 Glyco_hydro_97: Glyco 20.4 7.3E+02 0.016 24.7 9.3 107 67-195 29-154 (273)
135 cd04908 ACT_Bt0572_1 N-termina 20.1 1.9E+02 0.0041 21.5 4.1 26 71-96 14-39 (66)
136 TIGR00288 conserved hypothetic 20.1 6.7E+02 0.014 23.1 8.3 18 39-56 21-38 (160)
137 PRK09856 fructoselysine 3-epim 20.0 7.2E+02 0.016 23.2 11.0 20 71-90 14-33 (275)
No 1
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-90 Score=651.35 Aligned_cols=229 Identities=29% Similarity=0.513 Sum_probs=217.5
Q ss_pred cCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHH
Q 017611 35 AVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEK 114 (368)
Q Consensus 35 ~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~ 114 (368)
..+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++||+||||+|||+||++||++||+|+..+
T Consensus 2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~ 81 (230)
T PRK14837 2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY 81 (230)
T ss_pred CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhh
Q 017611 115 INELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194 (368)
Q Consensus 115 l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~ 194 (368)
|.+... .++++|||||||||+++||++++++++++|+.|++|++++||||++||||+||++|++++++..
T Consensus 82 l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~------- 151 (230)
T PRK14837 82 LSSEFN---FYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSSG------- 151 (230)
T ss_pred HHHHHH---HHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhcC-------
Confidence 987554 4789999999999999999999999999999999999999999999999999999999997431
Q ss_pred hccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCC
Q 017611 195 NANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGN 274 (368)
Q Consensus 195 ~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 274 (368)
+
T Consensus 152 ---------~---------------------------------------------------------------------- 152 (230)
T PRK14837 152 ---------L---------------------------------------------------------------------- 152 (230)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHH
Q 017611 275 GVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354 (368)
Q Consensus 275 ~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~y 354 (368)
.+++|+++.|+++||++++||||||||||||+|||||||||++||||||+|++||||+.+||.+||.+|
T Consensus 153 -----------~~~~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y 221 (230)
T PRK14837 153 -----------DLETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECF 221 (230)
T ss_pred -----------ChhhCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHH
Confidence 245688889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhh
Q 017611 355 QRNHSFLEK 363 (368)
Q Consensus 355 q~r~rRfGK 363 (368)
|+|+||||+
T Consensus 222 ~~R~RrfG~ 230 (230)
T PRK14837 222 KNRKRNFGR 230 (230)
T ss_pred hcccCcCCC
Confidence 999999995
No 2
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.3e-90 Score=650.26 Aligned_cols=235 Identities=32% Similarity=0.525 Sum_probs=220.7
Q ss_pred hcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHH
Q 017611 34 LAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLE 113 (368)
Q Consensus 34 l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~ 113 (368)
|..|++|+|||||||||||||+++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+..
T Consensus 3 ~~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~ 82 (241)
T PRK14842 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVE 82 (241)
T ss_pred CCCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhh
Q 017611 114 KINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLA 193 (368)
Q Consensus 114 ~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~ 193 (368)
++.+.++ .+.++||||+||||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 83 ~l~~~~~---~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~----- 154 (241)
T PRK14842 83 FIETRLD---TIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARK----- 154 (241)
T ss_pred HHHHHHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH-----
Confidence 9998765 37789999999999999999999999999999999999999999999999999999999987631
Q ss_pred hhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccC
Q 017611 194 VNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIG 273 (368)
Q Consensus 194 ~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 273 (368)
.|.+
T Consensus 155 -------~~~~--------------------------------------------------------------------- 158 (241)
T PRK14842 155 -------AKKV--------------------------------------------------------------------- 158 (241)
T ss_pred -------cCCC---------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCCccccccCCC-CCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 274 NGVTEGFEEKQGNN-PIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 274 ~~~i~~~e~~~~~~-e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
.+ ++|+++.|+++||+++.||||||||||||+|||||||||++||||||++++||||+++||.+||.
T Consensus 159 ------------~~~~~i~e~~~~~~L~t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~dl~~al~ 226 (241)
T PRK14842 159 ------------TLEKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLK 226 (241)
T ss_pred ------------CccccCCHHHHHHHhCcCCCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccCCHHHHHHHHH
Confidence 12 35888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhh
Q 017611 353 KFQRNHSFLEKK 364 (368)
Q Consensus 353 ~yq~r~rRfGK~ 364 (368)
+||+|.||||+.
T Consensus 227 ~y~~R~RrfG~~ 238 (241)
T PRK14842 227 WYETRTRKFGGL 238 (241)
T ss_pred HHhccccccCCc
Confidence 999999999974
No 3
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-89 Score=648.11 Aligned_cols=257 Identities=53% Similarity=0.902 Sum_probs=241.6
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 15 PTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
.+|..+.+..++++. +.+..||+|+||||||||||||||++|++..+||.+|+.+|.+|++||.++||++||+||||+
T Consensus 14 ~~~~~~~~~~~~~~~--~~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSi 91 (271)
T KOG1602|consen 14 SSWIDEALQSLMEKF--RLLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSI 91 (271)
T ss_pred hhhHHHHHHHHHHHH--HHHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEeh
Confidence 347777888888887 566779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHH
Q 017611 95 DNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSAD 174 (368)
Q Consensus 95 eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~Yggrd 174 (368)
|||+||++||+.||+|+.++++++......+++|||||||+||+++||+++++++.++|++|++|++++||||++|+||+
T Consensus 92 eNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~ 171 (271)
T KOG1602|consen 92 ENFKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRD 171 (271)
T ss_pred hhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccC
Q 017611 175 EIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTD 254 (368)
Q Consensus 175 EI~~Avr~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 254 (368)
||++|||.++.++ +.|.+
T Consensus 172 EI~~a~r~~~~~~------------~~g~~-------------------------------------------------- 189 (271)
T KOG1602|consen 172 EILHAVRGIVKRV------------KDGDI-------------------------------------------------- 189 (271)
T ss_pred HHHHHHHHHHHhh------------hcCCC--------------------------------------------------
Confidence 9999999999874 22322
Q ss_pred CCCCCchhhHhhhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEe
Q 017611 255 GVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDS 334 (368)
Q Consensus 255 ~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF 334 (368)
+++|++.+++.+||+++.|+||||||||||.|||||||||+|||+|+|
T Consensus 190 --------------------------------~~~i~~~~~e~~l~~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f 237 (271)
T KOG1602|consen 190 --------------------------------DVDINLSDIEECLYTSDVPHPDLLIRTSGEDRLSNFLLWQTSETELFF 237 (271)
T ss_pred --------------------------------ccchhhHHHHHhhccCCCCCCCEEEEcCCcchHHHHHHHHhcccEEee
Confidence 125777889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhcc
Q 017611 335 PAALWPEIGLWHLVWAVLKFQRNHSFLEKKKKQ 367 (368)
Q Consensus 335 ~d~lWPdf~~~df~~al~~yq~r~rRfGK~~~~ 367 (368)
.|+|||||++|+|.+||++||++++++|+++++
T Consensus 238 ~~~LWPefg~~~l~~aiLkfq~~~~~l~~~~~~ 270 (271)
T KOG1602|consen 238 ADALWPEFGLWHLFWAILKFQRNQSYLGKRKKL 270 (271)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999999999886
No 4
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.6e-89 Score=652.17 Aligned_cols=238 Identities=35% Similarity=0.551 Sum_probs=223.3
Q ss_pred hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL 112 (368)
Q Consensus 33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~ 112 (368)
.+..+++|+||||||||||||||++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+.
T Consensus 12 ~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~ 91 (253)
T PRK14832 12 DLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFE 91 (253)
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611 113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL 192 (368)
Q Consensus 113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~ 192 (368)
.++.+.+. .++++|||||||||+++||++++++++++|++|++|++++||||++||||+||++|++++++++.
T Consensus 92 ~~l~~~~~---~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~---- 164 (253)
T PRK14832 92 RLLRRELA---QMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQ---- 164 (253)
T ss_pred HHHHHHHH---HHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH----
Confidence 99988554 47889999999999999999999999999999999999999999999999999999999987631
Q ss_pred hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611 193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI 272 (368)
Q Consensus 193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 272 (368)
.|.+
T Consensus 165 --------~g~~-------------------------------------------------------------------- 168 (253)
T PRK14832 165 --------QGKL-------------------------------------------------------------------- 168 (253)
T ss_pred --------hCCC--------------------------------------------------------------------
Confidence 1221
Q ss_pred CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
.+++|+++.|+++||++++||||||||||||+||||||||||+||||||++++||||+.+||.+||.
T Consensus 169 -------------~~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~ 235 (253)
T PRK14832 169 -------------SADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALL 235 (253)
T ss_pred -------------ChhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHHHHH
Confidence 3456888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhc
Q 017611 353 KFQRNHSFLEKKKK 366 (368)
Q Consensus 353 ~yq~r~rRfGK~~~ 366 (368)
+||+|+||||+.+.
T Consensus 236 ~y~~R~RRfG~~~~ 249 (253)
T PRK14832 236 SYQKRDRRFGQVKA 249 (253)
T ss_pred HHHhccccCCCccc
Confidence 99999999998764
No 5
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4e-89 Score=656.11 Aligned_cols=261 Identities=31% Similarity=0.488 Sum_probs=239.2
Q ss_pred cCchHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEe
Q 017611 13 TTPTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAF 92 (368)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaF 92 (368)
.+.+.+..+++.+|++.+.+.+..+++|+|||||||||||||+++|++..+||+.|+++|.++++||.++||++||||||
T Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaF 94 (275)
T PRK14835 15 RTRSAARGPLYWGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVF 94 (275)
T ss_pred HhhhhccchhHHHHHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 34556777899999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC
Q 017611 93 SIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTS 172 (368)
Q Consensus 93 S~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~Ygg 172 (368)
|+|||+||++||++||+|+.+++.+++.. +.++++|||||||||+++||++++++++++|++|++|++++||||++|||
T Consensus 95 S~EN~~R~~~EV~~Lm~L~~~~l~~~~~~-~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Ygg 173 (275)
T PRK14835 95 STDNFSRSPAEVETLMNLFEREARRMAVD-PRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGG 173 (275)
T ss_pred EccccCCCHHHHHHHHHHHHHHHHHHhch-hhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCC
Confidence 99999999999999999999999987753 34788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccc
Q 017611 173 ADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVC 252 (368)
Q Consensus 173 rdEI~~Avr~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 252 (368)
|+||++|++++++++. .|.+++ +
T Consensus 174 r~EI~~A~k~i~~~~~------------~g~~~~-------------------------------------~-------- 196 (275)
T PRK14835 174 REEIVDAVKSLLLEAA------------ATGKSP-------------------------------------E-------- 196 (275)
T ss_pred HHHHHHHHHHHHHHHH------------cCCCCh-------------------------------------H--------
Confidence 9999999999997632 232211 0
Q ss_pred cCCCCCCchhhHhhhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeE
Q 017611 253 TDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLL 332 (368)
Q Consensus 253 ~~~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytEl 332 (368)
+ -.++++++.|++|||+++.||||||||||||+|||||||||++||||
T Consensus 197 -----------------------------~---i~~~~~e~~i~~~L~~~~~p~pDLLIRTsGE~RLSnFLLWQsayaEl 244 (275)
T PRK14835 197 -----------------------------E---VAAELTPEHISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEY 244 (275)
T ss_pred -----------------------------H---hcccCCHHHHHHHhccCCCCCCCEEEecCCCccccCCHHHhhhheEE
Confidence 0 01345788899999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHhhhhhhh
Q 017611 333 DSPAALWPEIGLWHLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 333 yF~d~lWPdf~~~df~~al~~yq~r~rRfGK 363 (368)
||+|++||||+++||++||++||+|+||||+
T Consensus 245 yF~d~lWPdF~~~d~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 245 YFCDVYWPGFRKVDFLRALRDYQGRERRFGR 275 (275)
T ss_pred EeCCCCCCcCCHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999996
No 6
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=3.8e-89 Score=640.55 Aligned_cols=226 Identities=37% Similarity=0.611 Sum_probs=214.7
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLK 120 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~ 120 (368)
+|||||||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+..+|.+..+
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999997554
Q ss_pred hhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhccccC
Q 017611 121 EQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVS 200 (368)
Q Consensus 121 ~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~~v~ 200 (368)
.++++|||||||||+++||++++++++++|++|++|++++||||++||||+||++|++++++++.
T Consensus 81 ---~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~------------ 145 (226)
T TIGR00055 81 ---ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVK------------ 145 (226)
T ss_pred ---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH------------
Confidence 47889999999999999999999999999999999999999999999999999999999987631
Q ss_pred CCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCCCcc
Q 017611 201 NGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGF 280 (368)
Q Consensus 201 ~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i~~~ 280 (368)
+|.+
T Consensus 146 ~g~~---------------------------------------------------------------------------- 149 (226)
T TIGR00055 146 SGKL---------------------------------------------------------------------------- 149 (226)
T ss_pred hCCC----------------------------------------------------------------------------
Confidence 2222
Q ss_pred ccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhh
Q 017611 281 EEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSF 360 (368)
Q Consensus 281 e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r~rR 360 (368)
.+++|+++.|+++||++++||||||||||||+|||||||||++||||||++++||||+++||.+||.+||+|+||
T Consensus 150 -----~~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~al~~y~~R~RR 224 (226)
T TIGR00055 150 -----LPEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRR 224 (226)
T ss_pred -----ChhhCCHHHHHHhhccCCCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHHHHHHhccCcc
Confidence 356788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 017611 361 LE 362 (368)
Q Consensus 361 fG 362 (368)
||
T Consensus 225 fG 226 (226)
T TIGR00055 225 FG 226 (226)
T ss_pred CC
Confidence 98
No 7
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.9e-89 Score=641.36 Aligned_cols=233 Identities=30% Similarity=0.412 Sum_probs=218.1
Q ss_pred CCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHH
Q 017611 36 VGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKI 115 (368)
Q Consensus 36 ~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l 115 (368)
.+++|+|||||||||||||+++|++..+||+.|+++|.++++||.++||++|||||||+|||+||++||++||+|+..+|
T Consensus 1 ~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l 80 (233)
T PRK14833 1 MDNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYL 80 (233)
T ss_pred CCCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhh
Q 017611 116 NELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195 (368)
Q Consensus 116 ~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~ 195 (368)
.+.++ .+.++||||||+||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++..
T Consensus 81 ~~~~~---~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~------ 151 (233)
T PRK14833 81 KDERS---TYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPS------ 151 (233)
T ss_pred HHHHH---HHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhc------
Confidence 87553 478899999999999999999999999999999999999999999999999999999999875210
Q ss_pred ccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCC
Q 017611 196 ANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNG 275 (368)
Q Consensus 196 ~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 275 (368)
..
T Consensus 152 ----~~-------------------------------------------------------------------------- 153 (233)
T PRK14833 152 ----HI-------------------------------------------------------------------------- 153 (233)
T ss_pred ----cc--------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHH
Q 017611 276 VTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355 (368)
Q Consensus 276 ~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq 355 (368)
...+|+++.|+++||++++||||||||||||+|||||||||++||||||++++||||+++||..||.+||
T Consensus 154 ----------~~~~i~e~~l~~~L~~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~ 223 (233)
T PRK14833 154 ----------GELESLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFY 223 (233)
T ss_pred ----------CcccCCHHHHHHHhccCCCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHHHHHHHHHHHH
Confidence 1124677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhh
Q 017611 356 RNHSFLEKKK 365 (368)
Q Consensus 356 ~r~rRfGK~~ 365 (368)
+|+||||+.|
T Consensus 224 ~r~rrfG~~~ 233 (233)
T PRK14833 224 KRVRKFGGLK 233 (233)
T ss_pred hhhhhccCCC
Confidence 9999999865
No 8
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6e-89 Score=644.83 Aligned_cols=237 Identities=35% Similarity=0.546 Sum_probs=221.8
Q ss_pred hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL 112 (368)
Q Consensus 33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~ 112 (368)
.+..+++|+|||||||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+.
T Consensus 4 ~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~ 83 (242)
T PRK14838 4 QIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLL 83 (242)
T ss_pred cccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611 113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL 192 (368)
Q Consensus 113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~ 192 (368)
.++.+. .++++|||||||||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 84 ~~l~~~-----~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~---- 154 (242)
T PRK14838 84 DSIEEE-----TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQ---- 154 (242)
T ss_pred HHHHHH-----HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHH----
Confidence 999752 37889999999999999999999999999999999999999999999999999999999987631
Q ss_pred hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611 193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI 272 (368)
Q Consensus 193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 272 (368)
.|.+
T Consensus 155 --------~g~~-------------------------------------------------------------------- 158 (242)
T PRK14838 155 --------NGEL-------------------------------------------------------------------- 158 (242)
T ss_pred --------hCCC--------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
.+++|+++.++++||++++||||||||||||+|||||||||++||||||++++||||+.+||++||.
T Consensus 159 -------------~~~~i~e~~~~~~L~~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ai~ 225 (242)
T PRK14838 159 -------------NPEEITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIY 225 (242)
T ss_pred -------------ChhhCCHHHHHHHhccCCCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCCHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhcc
Q 017611 353 KFQRNHSFLEKKKKQ 367 (368)
Q Consensus 353 ~yq~r~rRfGK~~~~ 367 (368)
+||+|+||||+.-.|
T Consensus 226 ~y~~r~RrfG~~~~~ 240 (242)
T PRK14838 226 DYQKRERRFGKTSEQ 240 (242)
T ss_pred HHHhccccCCCcccc
Confidence 999999999986444
No 9
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-88 Score=644.52 Aligned_cols=238 Identities=31% Similarity=0.485 Sum_probs=223.0
Q ss_pred HHHhhcCCCCCCEEEEEecCChhHHHhcC----CChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHH
Q 017611 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLN----VEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQ 105 (368)
Q Consensus 30 l~~~l~~~~iP~HIAiIMDGNRR~A~~~g----l~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~ 105 (368)
-..-|+.+++|+|||||||||||||+++| ++..+||+.|++++.++++||.++||++|||||||+|||+||++||+
T Consensus 9 ~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~ 88 (250)
T PRK14840 9 QENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVA 88 (250)
T ss_pred hhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHH
Confidence 34557889999999999999999999975 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 106 NLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 106 ~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
.||+|+..+|.+.++ .+.++|||||||||+++||++++++++++|++|++|++++||||++||||+||++|++++++
T Consensus 89 ~Lm~L~~~~l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~ 165 (250)
T PRK14840 89 ELFSLFNSQLDSQLP---YLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQ 165 (250)
T ss_pred HHHHHHHHHHHHHHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 999999999998654 47889999999999999999999999999999999999999999999999999999999997
Q ss_pred cccchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHh
Q 017611 186 NKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQ 265 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 265 (368)
++. .|.+
T Consensus 166 ~v~------------~~~~------------------------------------------------------------- 172 (250)
T PRK14840 166 DLA------------NKKI------------------------------------------------------------- 172 (250)
T ss_pred HHH------------hCCC-------------------------------------------------------------
Confidence 631 1222
Q ss_pred hhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHH
Q 017611 266 ALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLW 345 (368)
Q Consensus 266 ~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~ 345 (368)
.+++|+++.|+++||+.++||||||||||||+|||||||||++||||||++++||||+++
T Consensus 173 --------------------~~~~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~ 232 (250)
T PRK14840 173 --------------------SSDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPN 232 (250)
T ss_pred --------------------ChhhCCHHHHHHHhccCCCCCCCEEEeCCCCcccccchHHhHhceeEEECCCCCCcCCHH
Confidence 345788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 017611 346 HLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 346 df~~al~~yq~r~rRfGK 363 (368)
||.+||.+||+|.|||||
T Consensus 233 df~~al~~y~~R~RrfG~ 250 (250)
T PRK14840 233 DLLEAIKTYQQRSRRGGK 250 (250)
T ss_pred HHHHHHHHHhcccCcCCC
Confidence 999999999999999996
No 10
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.9e-88 Score=643.11 Aligned_cols=254 Identities=28% Similarity=0.459 Sum_probs=234.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChh-hhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 15 PTQLLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEG-AGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~-~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
++++...++.+|++.+.+.+..+++|+|||||||||||||+++|++.. +||+.|++++.++++||.++||++|||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 2 RLNLRRLLYKVYARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred ccchhHHHHHHHHHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 456777788999999999998899999999999999999999999998 9999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCH
Q 017611 94 IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSA 173 (368)
Q Consensus 94 ~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~Yggr 173 (368)
+|||+||++||++||+|+..++.+++ ++++|+|||+||+++||++++++++++|++|++|++++||||++||||
T Consensus 82 ~eN~~R~~~Ev~~Lm~L~~~~l~~~~------~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr 155 (256)
T PRK14828 82 TDNLGRPSEELNPLLDIIEDVVRQLA------PDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGR 155 (256)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHH------HhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCH
Confidence 99999999999999999999998765 368999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCccccc
Q 017611 174 DEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCT 253 (368)
Q Consensus 174 dEI~~Avr~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 253 (368)
+||++|++++++++. .|.+.+
T Consensus 156 ~EI~~A~~~~~~~~~------------~~~~~~----------------------------------------------- 176 (256)
T PRK14828 156 QEIVDAVRSLLTEHK------------DKGTSI----------------------------------------------- 176 (256)
T ss_pred HHHHHHHHHHHHHHH------------hCCCCh-----------------------------------------------
Confidence 999999999987632 122210
Q ss_pred CCCCCCchhhHhhhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEE
Q 017611 254 DGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLD 333 (368)
Q Consensus 254 ~~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytEly 333 (368)
+ +..++|+++.|+++||+++.||||||||||||+|||||||||++|||||
T Consensus 177 ---------------------------~---~~~~~i~e~~i~~~L~~~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaEly 226 (256)
T PRK14828 177 ---------------------------D---ELAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYY 226 (256)
T ss_pred ---------------------------h---hccccCCHHHHHHHhccCCCCCCCEEEeCCCCCcccCChHHHhhheEEE
Confidence 0 0135688899999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHhhhhhhh
Q 017611 334 SPAALWPEIGLWHLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 334 F~d~lWPdf~~~df~~al~~yq~r~rRfGK 363 (368)
|++++||||+++||+.||.+||+|+|||||
T Consensus 227 F~~~lWPdf~~~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 227 FCETYWPAFRKVDFLRALRDYSQRERRFGK 256 (256)
T ss_pred eCCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 999999999999999999999999999996
No 11
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.1e-88 Score=643.49 Aligned_cols=238 Identities=31% Similarity=0.497 Sum_probs=223.3
Q ss_pred HHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 30 l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
+...+..+++|+|||||||||||||+++|++..+||+.|++++.+|++||.++||++||+||||+|||+||++||++||+
T Consensus 11 ~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~ 90 (249)
T PRK14831 11 LPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMT 90 (249)
T ss_pred hhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccc
Q 017611 110 LLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSD 189 (368)
Q Consensus 110 L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~ 189 (368)
|+.++|.+... .+.++||||+||||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 91 L~~~~l~~~~~---~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~- 166 (249)
T PRK14831 91 LFERVLRRELE---ELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQ- 166 (249)
T ss_pred HHHHHHHHHHH---HHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHH-
Confidence 99999988553 47899999999999999999999999999999999999999999999999999999999997632
Q ss_pred hhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhh
Q 017611 190 ESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRA 269 (368)
Q Consensus 190 ~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t 269 (368)
.|.+
T Consensus 167 -----------~g~l----------------------------------------------------------------- 170 (249)
T PRK14831 167 -----------QGEL----------------------------------------------------------------- 170 (249)
T ss_pred -----------cCCC-----------------------------------------------------------------
Confidence 2322
Q ss_pred cccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHH
Q 017611 270 GRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349 (368)
Q Consensus 270 ~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~ 349 (368)
.+++|+++.|+++||++++||||||||||||+|||||||||++||||||++++||||+++||++
T Consensus 171 ----------------~~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~ 234 (249)
T PRK14831 171 ----------------DPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHK 234 (249)
T ss_pred ----------------ChHhCCHHHHHHhhccCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHH
Confidence 2456888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 017611 350 AVLKFQRNHSFLEK 363 (368)
Q Consensus 350 al~~yq~r~rRfGK 363 (368)
||.+||+|+||||+
T Consensus 235 al~~y~~R~RRfG~ 248 (249)
T PRK14831 235 ALLDYQSRERRFGG 248 (249)
T ss_pred HHHHHHhcccCCCC
Confidence 99999999999997
No 12
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=6.2e-88 Score=657.17 Aligned_cols=294 Identities=23% Similarity=0.372 Sum_probs=231.3
Q ss_pred HHHHHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHH
Q 017611 23 GSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPA 102 (368)
Q Consensus 23 ~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~ 102 (368)
..++++++.++|++||+|+||||||||||||||++|+++.+||++|+++|.+|++||.++||++|||||||+|||+||++
T Consensus 3 ~~~~~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~ 82 (322)
T PTZ00349 3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPE 82 (322)
T ss_pred hHHHHHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHH-----
Q 017611 103 EVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIV----- 177 (368)
Q Consensus 103 EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~----- 177 (368)
||++||+|+..++.+.......+.++||||||||++++||++++++++++|++|++|++++||||++||||+||+
T Consensus 83 EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~ 162 (322)
T PTZ00349 83 EIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFN 162 (322)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcc
Confidence 999999999888876432234578999999999999999999999999999999999999999999999999999
Q ss_pred -----HHHHHHHhcccchhhhh-hccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCccc
Q 017611 178 -----HAVQESFKNKSDESLAV-NANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATV 251 (368)
Q Consensus 178 -----~Avr~l~~~~~~~~~~~-~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 251 (368)
+|++++++++..+..++ -.+.+..|.+.+ + +....|.-+... +..+.++.+..
T Consensus 163 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~--------~~~~~~~~~~~~-~~~~~~~~~~~ 221 (322)
T PTZ00349 163 PNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAI------------P--------DDEDECDYLDHE-LENERIDLDLK 221 (322)
T ss_pred cchHHHHHHHHHHHhcccccccccccccccccccc------------c--------hhcccccccccc-ccccccccccc
Confidence 68898887642110000 001122232210 0 000001000000 00000111111
Q ss_pred ccCCCCCCchhhHhhhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhh-cce
Q 017611 252 CTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQT-SNC 330 (368)
Q Consensus 252 ~~~~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~-ayt 330 (368)
.+..- +|.+++.+ +++.|++++|++||||+++||||||||||||+|||||||||+ +||
T Consensus 222 ~~~~~-------------~~~~~~~i--------~e~~i~~~~~~~~Lyt~~~PdpDLlIRTSGE~RLSNFLLWQ~aays 280 (322)
T PTZ00349 222 FDGDC-------------ICGEKSFL--------NEEQIEIVNYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFT 280 (322)
T ss_pred ccccc-------------cccccccC--------ChhhccHHHHHHhccCCCCCCCCEEEECCCcccccccHHhhcccce
Confidence 11111 12222222 357799999999999999999999999999999999999999 599
Q ss_pred eEEecCCCCCCCCHHHHHHHHHHHHHhh
Q 017611 331 LLDSPAALWPEIGLWHLVWAVLKFQRNH 358 (368)
Q Consensus 331 ElyF~d~lWPdf~~~df~~al~~yq~r~ 358 (368)
||||+|+|||||+.+||++||.+||+++
T Consensus 281 ElyF~d~lWPdF~~~d~~~ai~~yq~~~ 308 (322)
T PTZ00349 281 EIYFINEYWPIFNFLQFIYIILHYTIFQ 308 (322)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999843
No 13
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.2e-88 Score=636.08 Aligned_cols=229 Identities=33% Similarity=0.559 Sum_probs=215.9
Q ss_pred CCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHH
Q 017611 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINE 117 (368)
Q Consensus 38 ~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~ 117 (368)
++|+|||||||||||||+++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+.++|.+
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 81 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhcc
Q 017611 118 LLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNAN 197 (368)
Q Consensus 118 ~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~ 197 (368)
.++ .+.++|||||||||+++||++++++++++|++|++|++++||||++||||+||++|++++++++.
T Consensus 82 ~~~---~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~--------- 149 (233)
T PRK14841 82 EME---LLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVS--------- 149 (233)
T ss_pred HHH---HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHH---------
Confidence 543 47889999999999999999999999999999999999999999999999999999999986531
Q ss_pred ccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCC
Q 017611 198 QVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVT 277 (368)
Q Consensus 198 ~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i 277 (368)
.|
T Consensus 150 ---~~--------------------------------------------------------------------------- 151 (233)
T PRK14841 150 ---QG--------------------------------------------------------------------------- 151 (233)
T ss_pred ---cC---------------------------------------------------------------------------
Confidence 11
Q ss_pred CccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHh
Q 017611 278 EGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRN 357 (368)
Q Consensus 278 ~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r 357 (368)
..++|+++.|+++||++++||||||||||||+||||||||||+||||||++++||||+++||..||.+||+|
T Consensus 152 --------~~~~i~~~~~~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r 223 (233)
T PRK14841 152 --------KKIELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKR 223 (233)
T ss_pred --------CcCCCCHHHHHHHhccCCCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHHHHHHHHHHhc
Confidence 113467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhh
Q 017611 358 HSFLEKK 364 (368)
Q Consensus 358 ~rRfGK~ 364 (368)
+||||+.
T Consensus 224 ~rrfG~~ 230 (233)
T PRK14841 224 ERRFGGL 230 (233)
T ss_pred CccCCCC
Confidence 9999985
No 14
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.5e-88 Score=638.63 Aligned_cols=235 Identities=30% Similarity=0.492 Sum_probs=221.5
Q ss_pred hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL 112 (368)
Q Consensus 33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~ 112 (368)
.++.+++|+||||||||||||||++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+.
T Consensus 8 ~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~ 87 (243)
T PRK14829 8 DIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSR 87 (243)
T ss_pred ccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611 113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL 192 (368)
Q Consensus 113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~ 192 (368)
+++..... .+.++|||||||||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 88 ~~l~~~~~---~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~---- 160 (243)
T PRK14829 88 DVIHRRRE---QMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVR---- 160 (243)
T ss_pred HHHHHHHH---HHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHH----
Confidence 99987543 47889999999999999999999999999999999999999999999999999999999987631
Q ss_pred hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611 193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI 272 (368)
Q Consensus 193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 272 (368)
.|.+
T Consensus 161 --------~g~~-------------------------------------------------------------------- 164 (243)
T PRK14829 161 --------DGKI-------------------------------------------------------------------- 164 (243)
T ss_pred --------cCCC--------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
.+++|+++.|+++||+++.||||||||||||+|||||||||++||||||++++||||+++||+.||.
T Consensus 165 -------------~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~al~ 231 (243)
T PRK14829 165 -------------SGDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAID 231 (243)
T ss_pred -------------ChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcCCHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q 017611 353 KFQRNHSFLEK 363 (368)
Q Consensus 353 ~yq~r~rRfGK 363 (368)
+||+|+||||+
T Consensus 232 ~y~~r~rRfG~ 242 (243)
T PRK14829 232 EYAHRDRRFGG 242 (243)
T ss_pred HHhccCccCCC
Confidence 99999999997
No 15
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.6e-88 Score=642.36 Aligned_cols=239 Identities=31% Similarity=0.528 Sum_probs=225.0
Q ss_pred HhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHH
Q 017611 32 RVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLL 111 (368)
Q Consensus 32 ~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~ 111 (368)
.+|+.+++|+|||||||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+
T Consensus 7 ~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~ 86 (253)
T PRK14836 7 MIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELF 86 (253)
T ss_pred cccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchh
Q 017611 112 LEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDES 191 (368)
Q Consensus 112 ~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~ 191 (368)
..+|.+.+. .+.++||+|||+|+++.||++++++++++|++|++|++++||||++||||+||++|++++++++.
T Consensus 87 ~~~l~~~~~---~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~--- 160 (253)
T PRK14836 87 LKALDREVD---KLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVA--- 160 (253)
T ss_pred HHHHHHHHH---HHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHH---
Confidence 999987654 48889999999999999999999999999999999999999999999999999999999987631
Q ss_pred hhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcc
Q 017611 192 LAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGR 271 (368)
Q Consensus 192 ~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 271 (368)
.|.+
T Consensus 161 ---------~g~l------------------------------------------------------------------- 164 (253)
T PRK14836 161 ---------AGKL------------------------------------------------------------------- 164 (253)
T ss_pred ---------hCCC-------------------------------------------------------------------
Confidence 2222
Q ss_pred cCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHH
Q 017611 272 IGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAV 351 (368)
Q Consensus 272 ~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al 351 (368)
++++|+++.|+++||++++||||||||||||+|||||||||++||||||++++||||+++||.+||
T Consensus 165 --------------~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~d~~~aL 230 (253)
T PRK14836 165 --------------APDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQAL 230 (253)
T ss_pred --------------ChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCCcCCHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhc
Q 017611 352 LKFQRNHSFLEKKKK 366 (368)
Q Consensus 352 ~~yq~r~rRfGK~~~ 366 (368)
.+||+|+||||+...
T Consensus 231 ~~y~~R~RRfG~~~~ 245 (253)
T PRK14836 231 EDYASRERRFGKTSA 245 (253)
T ss_pred HHHHccCccCCCchh
Confidence 999999999998643
No 16
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.1e-87 Score=633.41 Aligned_cols=237 Identities=32% Similarity=0.497 Sum_probs=223.6
Q ss_pred HhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHH
Q 017611 32 RVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLL 111 (368)
Q Consensus 32 ~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~ 111 (368)
+++.++++|+||||||||||||||++|++..+||+.|+++|.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus 7 ~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~ 86 (249)
T PRK14834 7 DESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLL 86 (249)
T ss_pred CCCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchh
Q 017611 112 LEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDES 191 (368)
Q Consensus 112 ~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~ 191 (368)
..++.+.+ +.+.++||+|||+||+++||+++++++.++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 87 ~~~l~~~~---~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~--- 160 (249)
T PRK14834 87 RLFIRRDL---AELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVA--- 160 (249)
T ss_pred HHHHHHHH---HHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHH---
Confidence 99998754 357899999999999999999999999999999999999999999999999999999999997631
Q ss_pred hhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcc
Q 017611 192 LAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGR 271 (368)
Q Consensus 192 ~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 271 (368)
+|.+
T Consensus 161 ---------~g~~------------------------------------------------------------------- 164 (249)
T PRK14834 161 ---------EGRL------------------------------------------------------------------- 164 (249)
T ss_pred ---------cCCC-------------------------------------------------------------------
Confidence 2222
Q ss_pred cCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHH
Q 017611 272 IGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAV 351 (368)
Q Consensus 272 ~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al 351 (368)
++++|+++.|+++||+++.||||||||||||+|||||||||++||||||++++||||+++||++||
T Consensus 165 --------------~~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf~~~d~~~al 230 (249)
T PRK14834 165 --------------DPASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAI 230 (249)
T ss_pred --------------ChhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcCCHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhh
Q 017611 352 LKFQRNHSFLEKK 364 (368)
Q Consensus 352 ~~yq~r~rRfGK~ 364 (368)
.+||+|+||||+.
T Consensus 231 ~~y~~r~rRfG~~ 243 (249)
T PRK14834 231 EEYARRERRFGGL 243 (249)
T ss_pred HHHHhcCccCCCC
Confidence 9999999999975
No 17
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7e-87 Score=633.66 Aligned_cols=236 Identities=36% Similarity=0.522 Sum_probs=223.0
Q ss_pred HhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHH
Q 017611 32 RVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLL 111 (368)
Q Consensus 32 ~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~ 111 (368)
..++.+++|+|||||||||||||+++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus 15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~ 94 (251)
T PRK14830 15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP 94 (251)
T ss_pred cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchh
Q 017611 112 LEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDES 191 (368)
Q Consensus 112 ~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~ 191 (368)
..+|.+++. .+.++||+|||+|++++||++++++++++|++|++|++++||||++||||+||++|++++++++.
T Consensus 95 ~~~l~~~~~---~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~--- 168 (251)
T PRK14830 95 VEFLDKFVP---ELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVL--- 168 (251)
T ss_pred HHHHHHHHH---HHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHH---
Confidence 999998765 37789999999999999999999999999999999999999999999999999999999997631
Q ss_pred hhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcc
Q 017611 192 LAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGR 271 (368)
Q Consensus 192 ~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~ 271 (368)
.|.+
T Consensus 169 ---------~g~l------------------------------------------------------------------- 172 (251)
T PRK14830 169 ---------DGKL------------------------------------------------------------------- 172 (251)
T ss_pred ---------cCCC-------------------------------------------------------------------
Confidence 2222
Q ss_pred cCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHH
Q 017611 272 IGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAV 351 (368)
Q Consensus 272 ~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al 351 (368)
++++|+++.|+++||+++.||||||||||||+|||||||||++||||||++++||||+++||++||
T Consensus 173 --------------~~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~aL 238 (251)
T PRK14830 173 --------------NPEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAI 238 (251)
T ss_pred --------------ChHhCCHHHHHHHhCcCCCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCCcCCHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhh
Q 017611 352 LKFQRNHSFLEK 363 (368)
Q Consensus 352 ~~yq~r~rRfGK 363 (368)
.+||+|+||||+
T Consensus 239 ~~y~~r~rrfG~ 250 (251)
T PRK14830 239 KDYQSRQRRFGG 250 (251)
T ss_pred HHHHhcccCCCC
Confidence 999999999997
No 18
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.3e-87 Score=629.40 Aligned_cols=223 Identities=30% Similarity=0.455 Sum_probs=211.7
Q ss_pred CCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHH
Q 017611 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINE 117 (368)
Q Consensus 38 ~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~ 117 (368)
.-|+|||||||||||||+++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+..+|.+
T Consensus 8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~ 87 (239)
T PRK14839 8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN 87 (239)
T ss_pred CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhcc
Q 017611 118 LLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNAN 197 (368)
Q Consensus 118 ~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~ 197 (368)
.+. .+.++|||||||||+++||++++++++++|++|++|++++||||++||||+||++|+++++.
T Consensus 88 ~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~~------------ 152 (239)
T PRK14839 88 ETE---RLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKALG------------ 152 (239)
T ss_pred HHH---HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhcC------------
Confidence 664 47899999999999999999999999999999999999999999999999999999997631
Q ss_pred ccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCC
Q 017611 198 QVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVT 277 (368)
Q Consensus 198 ~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i 277 (368)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T PRK14839 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHh
Q 017611 278 EGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRN 357 (368)
Q Consensus 278 ~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r 357 (368)
+++|+++.|+++|| +++||||||||||||+|||||||||++||||||+|++||||+++||.+||.+||+|
T Consensus 153 ---------~~~i~e~~~~~~l~-~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~~~ai~~yq~R 222 (239)
T PRK14839 153 ---------PEGLSREAFSDLLT-GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGR 222 (239)
T ss_pred ---------cccCCHHHHHHHhc-cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHHHHHHHHHhcc
Confidence 23466778999998 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhh
Q 017611 358 HSFLEKKK 365 (368)
Q Consensus 358 ~rRfGK~~ 365 (368)
.||||+.|
T Consensus 223 ~RrfG~~~ 230 (239)
T PRK14839 223 ERRFGGLP 230 (239)
T ss_pred ccccCCCC
Confidence 99999876
No 19
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.7e-87 Score=646.25 Aligned_cols=242 Identities=27% Similarity=0.452 Sum_probs=226.7
Q ss_pred HHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHH
Q 017611 26 MRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQ 105 (368)
Q Consensus 26 ~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~ 105 (368)
....+...|..+++|+|||||||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||+
T Consensus 54 ~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~ 133 (296)
T PRK14827 54 TSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVR 133 (296)
T ss_pred cccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHH
Confidence 34555677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 106 NLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 106 ~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
+||+|+.++|.+.. +.++++|||||||||+++||+++++.++++|++|++|++++||||++||||+||++|++++++
T Consensus 134 ~Lm~L~~~~l~~~~---~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~ 210 (296)
T PRK14827 134 FLMGFNRDVVRRRR---DNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAR 210 (296)
T ss_pred HHHHHHHHHHHHHH---HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999998754 348899999999999999999999999999999999999999999999999999999999987
Q ss_pred cccchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHh
Q 017611 186 NKSDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQ 265 (368)
Q Consensus 186 ~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 265 (368)
++. .|.+
T Consensus 211 ~v~------------~g~l------------------------------------------------------------- 217 (296)
T PRK14827 211 EAA------------AGRL------------------------------------------------------------- 217 (296)
T ss_pred HHH------------cCCC-------------------------------------------------------------
Confidence 631 2222
Q ss_pred hhhhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHH
Q 017611 266 ALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLW 345 (368)
Q Consensus 266 ~~~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~ 345 (368)
.+++|++++|+++||++++||||||||||||+|||||||||++||||||++++||||+++
T Consensus 218 --------------------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~d~lWPdF~~~ 277 (296)
T PRK14827 218 --------------------NPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRR 277 (296)
T ss_pred --------------------ChhhccHHHHHHHhccCCCCCCCEEEecCCcccccCchHhhhhheEEEecCCCCccCCHH
Confidence 356788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 017611 346 HLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 346 df~~al~~yq~r~rRfGK 363 (368)
||..||.+||+|+||||+
T Consensus 278 dl~~al~~y~~R~RRfG~ 295 (296)
T PRK14827 278 DLWAACEEYASRNRRFGS 295 (296)
T ss_pred HHHHHHHHHhhccccCCC
Confidence 999999999999999996
No 20
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=6.4e-84 Score=603.54 Aligned_cols=221 Identities=42% Similarity=0.743 Sum_probs=209.2
Q ss_pred CCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 017611 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELL 119 (368)
Q Consensus 40 P~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~ 119 (368)
|+|||||||||||||+++|++..+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+..++.+++
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhcccc
Q 017611 120 KEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQV 199 (368)
Q Consensus 120 ~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~~v 199 (368)
+. +.++||||||+||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 81 ~~---~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~----------- 146 (221)
T cd00475 81 KE---LEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVK----------- 146 (221)
T ss_pred HH---HHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHH-----------
Confidence 53 6789999999999999999999999999999999999999999999999999999999987631
Q ss_pred CCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCCCc
Q 017611 200 SNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEG 279 (368)
Q Consensus 200 ~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i~~ 279 (368)
.|.+
T Consensus 147 -~~~~--------------------------------------------------------------------------- 150 (221)
T cd00475 147 -AGKL--------------------------------------------------------------------------- 150 (221)
T ss_pred -cCCC---------------------------------------------------------------------------
Confidence 1221
Q ss_pred cccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 017611 280 FEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356 (368)
Q Consensus 280 ~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~ 356 (368)
.+++|+++.|+++|++++.||||||||||||+|||||||||++||||||++++||||+++||.+||.+||+
T Consensus 151 ------~~~~i~~~~~~~~L~~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~al~~y~~ 221 (221)
T cd00475 151 ------TPEDIDESTLNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQR 221 (221)
T ss_pred ------ChHhCCHHHHHHhhCcCCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHHHHHHHhC
Confidence 24568889999999999999999999999999999999999999999999999999999999999999985
No 21
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3.6e-82 Score=599.47 Aligned_cols=230 Identities=39% Similarity=0.648 Sum_probs=220.8
Q ss_pred CCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHH
Q 017611 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINE 117 (368)
Q Consensus 38 ~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~ 117 (368)
++|+|||||||||||||+++|+++..||+.|.+++.++++||.++||++||+||||+|||+||++||++||+++..++.+
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhcc
Q 017611 118 LLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNAN 197 (368)
Q Consensus 118 ~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~ 197 (368)
.+ ..+++++|+||++|+++.||+++++.|+.+|+.|++|++++||+|++||||+||++|+|++++++
T Consensus 95 ~~---~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v---------- 161 (245)
T COG0020 95 EL---KKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDV---------- 161 (245)
T ss_pred HH---HHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHH----------
Confidence 77 35789999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCC
Q 017611 198 QVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVT 277 (368)
Q Consensus 198 ~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i 277 (368)
..|.+
T Consensus 162 --~~g~l------------------------------------------------------------------------- 166 (245)
T COG0020 162 --AAGKL------------------------------------------------------------------------- 166 (245)
T ss_pred --HcCCC-------------------------------------------------------------------------
Confidence 23333
Q ss_pred CccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHh
Q 017611 278 EGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRN 357 (368)
Q Consensus 278 ~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r 357 (368)
+|++|+++.|++||++++.||||||||||||+|||||||||++||||||+|+|||||+..||++||++||+|
T Consensus 167 --------~~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R 238 (245)
T COG0020 167 --------SPEDIDEELISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKR 238 (245)
T ss_pred --------ChHHcCHHHHHHhhcccCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q 017611 358 HSFLEK 363 (368)
Q Consensus 358 ~rRfGK 363 (368)
++|||+
T Consensus 239 ~rrfG~ 244 (245)
T COG0020 239 ERRFGR 244 (245)
T ss_pred cccccC
Confidence 999997
No 22
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1e-81 Score=591.47 Aligned_cols=223 Identities=27% Similarity=0.424 Sum_probs=211.2
Q ss_pred ecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 017611 47 MDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVN 126 (368)
Q Consensus 47 MDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~ 126 (368)
||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+..+|.+.+. .++
T Consensus 1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~---~~~ 77 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVK---SLH 77 (229)
T ss_pred CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987654 478
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhccccCCCcccc
Q 017611 127 LYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVING 206 (368)
Q Consensus 127 ~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~~v~~g~~~~ 206 (368)
++||+||||||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++. +|.+
T Consensus 78 ~~~i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~------------~g~~-- 143 (229)
T PRK10240 78 RHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQ------------QGNL-- 143 (229)
T ss_pred HCCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHH------------cCCC--
Confidence 89999999999999999999999999999999999999999999999999999999987631 2322
Q ss_pred hhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCCCccccccCC
Q 017611 207 AEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGN 286 (368)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~~ 286 (368)
.
T Consensus 144 -------------------------------------------------------------------------------~ 144 (229)
T PRK10240 144 -------------------------------------------------------------------------------Q 144 (229)
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred CCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhhhhhhh
Q 017611 287 NPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEKKK 365 (368)
Q Consensus 287 ~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r~rRfGK~~ 365 (368)
+++|+++.|+++||++++||||||||||||+||||||||||+||||||++++||||+++||++||.+||+|+||||+.+
T Consensus 145 ~~~i~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~r~rrfG~~~ 223 (229)
T PRK10240 145 PDQIDEEMLNQHICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTE 223 (229)
T ss_pred hhhCCHHHHHHHhccCCCCCCCEEEeCCCcccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHccCccCCCCC
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999999999865
No 23
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=1.5e-81 Score=586.31 Aligned_cols=223 Identities=39% Similarity=0.694 Sum_probs=193.5
Q ss_pred EecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017611 46 IMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIV 125 (368)
Q Consensus 46 IMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~ 125 (368)
|||||||||+++|++..+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+|+..++.+++....+
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~- 79 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNF- 79 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcch-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876433
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhccccCCCccc
Q 017611 126 NLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVIN 205 (368)
Q Consensus 126 ~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~~~v~~g~~~ 205 (368)
.++||||||+||+++||++++++++++|+.|++|++++||||++||||+||++|++++++.+. +|.+
T Consensus 80 ~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~------------~~~~- 146 (223)
T PF01255_consen 80 HKNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQ------------SGKL- 146 (223)
T ss_dssp -HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHH------------TTSS-
T ss_pred hhcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhc------------cCcc-
Confidence 469999999999999999999999999999999999999999999999999999999998742 2222
Q ss_pred chhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCCCCccccccC
Q 017611 206 GAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQG 285 (368)
Q Consensus 206 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~i~~~e~~~~ 285 (368)
T Consensus 147 -------------------------------------------------------------------------------- 146 (223)
T PF01255_consen 147 -------------------------------------------------------------------------------- 146 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhhhhh
Q 017611 286 NNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 286 ~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r~rRfGK 363 (368)
.+++|+++.|+++||+++.| ||||||||||+||||||||||+||||||++++||||+++||+.||.+||+|+|||||
T Consensus 147 ~~~~i~~~~i~~~L~~~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~~r~rrfGk 223 (223)
T PF01255_consen 147 SPEDIDEELISSHLYTPDLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQRRERRFGK 223 (223)
T ss_dssp GGGG-SHHHHHHTSTTTTS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHHHCHHHTT-
T ss_pred ccccCCHHHHHhhccccCCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 24568889999999999997 999999999999999999999999999999999999999999999999999999997
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=99.32 E-value=4e-12 Score=121.96 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhhhhh
Q 017611 286 NNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQRNHSFLEK 363 (368)
Q Consensus 286 ~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~r~rRfGK 363 (368)
+++++|.+++++-|-.-+.|+|||+|+.|-..-|++|++||+.-||++-.+.+-| ++...|.++|++|+++++|.||
T Consensus 187 ~~~~itve~vds~l~e~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~~p~~~~-~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 187 SETDITVETVDSELKEFVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTRKPSHLC-TSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred CCccccHHHHHHHHHhcCCCCcceeeeeccchhhcCCCCceeEEEEeEeccccCc-ccHHHHHHHHHHHhhhhhhcCC
Confidence 4567899999999988889999999999999999999999999999999998855 9999999999999999999996
No 25
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=86.16 E-value=4.1 Score=35.64 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHH
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEP 144 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~ 144 (368)
.....+.+.+.++.|.++|++++++...+-.-+ +..-...-++.+.+.|+++++ ...++|+++-+-.-.......
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~--~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~i~lE~~~~~~~~~ 140 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSG--PEDDTEENWERLAENLRELAE---IAEEYGVRIALENHPGPFSET 140 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSS--TTSSHHHHHHHHHHHHHHHHH---HHHHHTSEEEEE-SSSSSSSE
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccc--cCCCHHHHHHHHHHHHHHHHh---hhhhhcceEEEecccCccccc
Confidence 677789999999999999999999986421111 112222444555566666654 356789988875433222211
Q ss_pred H--HHHHHHHHHHhcCCCceEEEEEec--CCCHHHHHHHHHHHHhc
Q 017611 145 V--RVAAEEVMMATARNSKVVLLVCLA--YTSADEIVHAVQESFKN 186 (368)
Q Consensus 145 v--~~~i~~~e~~T~~n~~~~LnI~~~--YggrdEI~~Avr~l~~~ 186 (368)
. ...+.++.+..... .+.+++-++ +-...+...+++.+...
T Consensus 141 ~~~~~~~~~~l~~~~~~-~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 141 PFSVEEIYRLLEEVDSP-NVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp ESSHHHHHHHHHHHTTT-TEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred hhhHHHHHHHHhhcCCC-cceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 1 12333333333321 233333332 33345666777666543
No 26
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=85.21 E-value=20 Score=33.66 Aligned_cols=109 Identities=15% Similarity=0.233 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe--cCCC--
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI--GNLK-- 139 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i--G~l~-- 139 (368)
..+...+.+.+.+++|..+|++.+.+... ..++..+.+| .++.+.+.++++++ ...++||++-+- +...
T Consensus 84 ~r~~~~~~~~~~i~~a~~lGa~~i~~~~~-~~~~~~~~~~---~~~~~~~~l~~l~~---~a~~~gv~l~iE~~~~~~~~ 156 (275)
T PRK09856 84 MRRESLDMIKLAMDMAKEMNAGYTLISAA-HAGYLTPPNV---IWGRLAENLSELCE---YAENIGMDLILEPLTPYESN 156 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEcCC-CCCCCCCHHH---HHHHHHHHHHHHHH---HHHHcCCEEEEecCCCCccc
Confidence 34567788999999999999999988763 3344444433 44555667777664 366899998764 2211
Q ss_pred CC--CHHHHHHHHHHHHHhc-CCCceEEEEEecCCCHHHHHHHHHHH
Q 017611 140 FL--SEPVRVAAEEVMMATA-RNSKVVLLVCLAYTSADEIVHAVQES 183 (368)
Q Consensus 140 ~L--p~~v~~~i~~~e~~T~-~n~~~~LnI~~~YggrdEI~~Avr~l 183 (368)
.+ +.++... .+... .|-++.+-++-.|..-+++...++.+
T Consensus 157 ~~~t~~~~~~l----~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~ 199 (275)
T PRK09856 157 VVCNANDVLHA----LALVPSPRLFSMVDICAPYVQAEPVMSYFDKL 199 (275)
T ss_pred ccCCHHHHHHH----HHHcCCCcceeEEeecchhcCCCCHHHHHHHh
Confidence 12 2233333 33332 34456666665555445666666655
No 27
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.52 E-value=32 Score=32.37 Aligned_cols=65 Identities=5% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
.....+.+.+++++|.++|+++|.+..+. .+..+.. ..-++.+.+.|+++++ ...++||++-+--
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~--~~~~~~~~~~l~~l~~---~a~~~gv~l~lE~ 153 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKS--EETRQRFIEGLAWAVE---QAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcc--ccccccc--HHHHHHHHHHHHHHHH---HHHHhCCEEEEEe
Confidence 45567889999999999999999986442 1222211 1234555566666654 4668899988743
No 28
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=74.53 E-value=43 Score=33.24 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCC--CHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCCC-
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR--KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKFL- 141 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR--~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~L- 141 (368)
..-++.|.++|+||.+.||. +|-+|.+=+-. -+..--.+...+.+.|.++ +.+++++|+|+-+- |....|
T Consensus 41 ~~Nl~~l~~~L~~n~~~~I~---~yRisS~liP~ashp~~~~~~~~~~~~~l~~i---G~~~~~~~iRls~HP~qf~vLn 114 (275)
T PF03851_consen 41 RQNLEDLLRILEYNIAHGIR---FYRISSDLIPLASHPEVGWDWEEEFAEELAEI---GDLAKENGIRLSMHPDQFTVLN 114 (275)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTSTT--S-HHHHHHHHHHHH---HHHHHHTT-EEEE---TT--TT
T ss_pred HHHHHHHHHHHHHHHHcCCC---EEecCcccCCCCCCcccccchHHHHHHHHHHH---HHHHHHcCCeEEecCCcceeCC
Confidence 45678889999999999965 68888754322 1211112334455555543 35688999999985 444333
Q ss_pred --CHHH-HHHHHHHHHH-------hcC---CCceEEEEEecCCCHHHHHHHHHHHHhc
Q 017611 142 --SEPV-RVAAEEVMMA-------TAR---NSKVVLLVCLAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 142 --p~~v-~~~i~~~e~~-------T~~---n~~~~LnI~~~YggrdEI~~Avr~l~~~ 186 (368)
.++| .++|.+++-- --. ...+++.++-.||.|++=.+-+.+-.+.
T Consensus 115 Sp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~RF~~~~~~ 172 (275)
T PF03851_consen 115 SPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALERFIENFKR 172 (275)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHHHHHHHHhh
Confidence 2444 4456665541 111 2478999999999999766555544443
No 29
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.67 E-value=50 Score=33.42 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCH-HHHH-HHHHHHHHHHHHHhhhhhhhhcCCcEEEEecC----CCC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP-AEVQ-NLMDLLLEKINELLKEQSIVNLYGIRVYFIGN----LKF 140 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~-~EV~-~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~----l~~ 140 (368)
.-+..|.++|+||.+.||+ +|-+|.+=|=--. .|+. .+.+.+.+.+.++ +....++|||+-+--+ +..
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~---f~RisS~l~P~ash~~~~~~~~~~~~~~l~~i---G~~a~~~~iRLS~Hp~qfi~LnS 122 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIP---FYRFSSSIFPFASHPDVGYDLVTFAQKELREI---GELAKTHQHRLTFHPGQFTQFTS 122 (312)
T ss_pred HHHHHHHHHHHHHHHcCCc---EEecCccccCcCcCchhhhhHHHHHHHHHHHH---HHHHHHcCeEEEECCCccccCCC
Confidence 4567789999999999987 4666665432111 2332 2334555555553 3467889999998643 333
Q ss_pred CCHH-HHHHHHHHHHHhc-------CC-----CceEEEEEecCCCHHHHHHHHHHHHhccc
Q 017611 141 LSEP-VRVAAEEVMMATA-------RN-----SKVVLLVCLAYTSADEIVHAVQESFKNKS 188 (368)
Q Consensus 141 Lp~~-v~~~i~~~e~~T~-------~n-----~~~~LnI~~~YggrdEI~~Avr~l~~~~~ 188 (368)
-.++ +.+.+.+++.... .. ..+++.++..||+|++-.+-+++..++..
T Consensus 123 ~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gdk~~alerf~~n~~~L~ 183 (312)
T TIGR00629 123 PRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTTLARFHQNYKRLS 183 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCCHHHHHHHHHHHHHHhh
Confidence 3344 4444666553221 11 46788888889999987777666665543
No 30
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=72.17 E-value=22 Score=32.28 Aligned_cols=81 Identities=17% Similarity=0.265 Sum_probs=53.9
Q ss_pred CCEEEEEecCChhHHHhcCCChhhhHHHHHHH-----HHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHH
Q 017611 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSS-----LISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEK 114 (368)
Q Consensus 40 P~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~-----L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~ 114 (368)
|.|++++.|+-+..=|+.=.+.-.+|+..... +..+-+++..+||+.+.. ++ -|=|.++..+...
T Consensus 51 p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~-----~g-----~EADDvIatla~~ 120 (169)
T PF02739_consen 51 PDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEV-----PG-----YEADDVIATLAKK 120 (169)
T ss_dssp EEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEE-----TT-----B-HHHHHHHHHHH
T ss_pred CceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecC-----CC-----CcHHHHHHHHHhh
Confidence 89999999998775555556777788775443 345667777889976543 33 5788888777555
Q ss_pred HHHHhhhhhhhhcCCcEEEEe-cCCCC
Q 017611 115 INELLKEQSIVNLYGIRVYFI-GNLKF 140 (368)
Q Consensus 115 l~~~~~~~~~~~~~girvr~i-G~l~~ 140 (368)
... .|..|.++ ||.|+
T Consensus 121 ~~~----------~~~~v~IvS~DkD~ 137 (169)
T PF02739_consen 121 ASE----------EGFEVIIVSGDKDL 137 (169)
T ss_dssp HHH----------TTCEEEEE-SSGGG
T ss_pred hcc----------CCCEEEEEcCCCCH
Confidence 443 35677774 56543
No 31
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.05 E-value=48 Score=31.35 Aligned_cols=66 Identities=11% Similarity=0.288 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF-QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~-kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
.-+....+.+.+.++.|.++|+++|++-.+ ..+ ..+.++ -++.+.+.++++++ ...++||+|-+--
T Consensus 92 ~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~--~~~~~~~~~~---~~~~~~~~l~~l~~---~A~~~GV~i~iE~ 158 (283)
T PRK13209 92 AVRAQALEIMRKAIQLAQDLGIRVIQLAGY--DVYYEQANNE---TRRRFIDGLKESVE---LASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCc--cccccccHHH---HHHHHHHHHHHHHH---HHHHhCCEEEEee
Confidence 346677888999999999999999987432 111 122222 23444456666553 3567899988853
No 32
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=65.92 E-value=74 Score=30.12 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
+-....++.+.+.++.|.++|++++.+..-+..- .+. +.-++.+.+.++++++ ...++||+|.+-
T Consensus 78 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~--~~~---~~~~~~~~~~l~~l~~---~a~~~gi~l~lE 142 (279)
T cd00019 78 EKREKSIERLKDEIERCEELGIRLLVFHPGSYLG--QSK---EEGLKRVIEALNELID---KAETKGVVIALE 142 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC--CCH---HHHHHHHHHHHHHHHH---hccCCCCEEEEe
Confidence 3577889999999999999999998875532211 122 2344555666777664 356889998873
No 33
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.14 E-value=58 Score=31.79 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++++.+.||+-+.+..-+-|.+.=+.+|-..+++.+.+.... .+.| +.| ... .+..+
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g-----------~~pv-i~g-v~~---~t~~a 88 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG-----------KVPV-YTG-VGG---NTSDA 88 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcE-EEe-cCc---cHHHH
Confidence 4678999999999999999999999999999999999998877554321 1211 122 111 24444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+..+.+-.-+..+.+.=.| .+.++|.+-++++++..
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~ 129 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST 129 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc
Confidence 4444444333334444444334 36899999999998753
No 34
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=62.00 E-value=57 Score=32.14 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=48.5
Q ss_pred HHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-CCCCCC--HHHHHH
Q 017611 77 KYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-NLKFLS--EPVRVA 148 (368)
Q Consensus 77 ~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~l~~Lp--~~v~~~ 148 (368)
+.+.++|++.|.+|. |+..|++|+.+|+-..+.-+... ...+|.+|++.- +-..-+ ..+..-
T Consensus 81 e~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~----------a~~~g~~v~~~~ed~~r~d~~~~v~~~ 150 (279)
T cd07947 81 KLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEE----------ALDHGIKPRCHLEDITRADIYGFVLPF 150 (279)
T ss_pred HHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHH----------HHHCCCeEEEEEEcccCCCcccchHHH
Confidence 556778999999983 23368999998876655433222 234577777743 333222 333344
Q ss_pred HHHHHHHhcCC-CceEEEEEecCC
Q 017611 149 AEEVMMATARN-SKVVLLVCLAYT 171 (368)
Q Consensus 149 i~~~e~~T~~n-~~~~LnI~~~Yg 171 (368)
+.++.++-... -++.+++|=..|
T Consensus 151 ~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 151 VNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCC
Confidence 44444433222 233677776555
No 35
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=61.40 E-value=61 Score=30.77 Aligned_cols=66 Identities=9% Similarity=0.218 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
-...+.+.+.+.++.|.++|+++|.+... +.+ .. ......++.+.+.++++++ ...++||++-+-.
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~-~~-~~~~~~~~~~~~~l~~l~~---~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGY--DVY-YE-EHDEETRRRFREGLKEAVE---LAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCc--ccc-cC-cCCHHHHHHHHHHHHHHHH---HHHHcCCEEEEee
Confidence 45678899999999999999999987532 111 11 1123335555667777664 4668999998863
No 36
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=60.74 E-value=32 Score=34.44 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHH
Q 017611 27 RRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQN 106 (368)
Q Consensus 27 ~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~ 106 (368)
+..+.+.|++. -+-|||+||= ..-.+-+.++++.|.+.||+ ||..=-+ .-+..
T Consensus 136 KE~vR~~I~~A--~kVIAIVMD~----------------FTD~dIf~DLleAa~kR~Vp---VYiLLD~------~~~~~ 188 (284)
T PF07894_consen 136 KEVVRRMIQQA--QKVIAIVMDV----------------FTDVDIFCDLLEAANKRGVP---VYILLDE------QNLPH 188 (284)
T ss_pred HHHHHHHHHHh--cceeEEEeec----------------cccHHHHHHHHHHHHhcCCc---EEEEech------hcChH
Confidence 34444455432 2569999994 34568899999999998874 5653111 11223
Q ss_pred HHHHHHHHHHHHhhhh--hhhhcCCcEEEEecCCC
Q 017611 107 LMDLLLEKINELLKEQ--SIVNLYGIRVYFIGNLK 139 (368)
Q Consensus 107 Lm~L~~~~l~~~~~~~--~~~~~~girvr~iG~l~ 139 (368)
.+ +|++.. ...+-.++|||.++-..
T Consensus 189 Fl--------~Mc~~~~v~~~~~~nmrVRsv~G~~ 215 (284)
T PF07894_consen 189 FL--------EMCEKLGVNLQHLKNMRVRSVTGCT 215 (284)
T ss_pred HH--------HHHHHCCCChhhcCCeEEEEecCCe
Confidence 33 333321 23456799999987543
No 37
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=59.69 E-value=70 Score=27.92 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCC--CHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFL--SEPVRV 147 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~L--p~~v~~ 147 (368)
....+++.-|++.|...|-|+. +++.- ..++|=....-++++. +..|++|+-++||.+.- ++++++
T Consensus 22 qdalDLi~~~~~~~~~~i~l~~---~~l~~------dFF~L~TglAGeiLQK---f~NY~iklAivGD~s~~~~S~~l~d 89 (113)
T PF13788_consen 22 QDALDLIGTAYEHGADRIILPK---EALSE------DFFDLRTGLAGEILQK---FVNYRIKLAIVGDFSAYATSKSLRD 89 (113)
T ss_pred hHHHHHHHHHHHcCCCEEEEEh---HHCCH------HHHHhhcchHHHHHHH---HHhhceeEEEEEcccccccchhHHH
Confidence 4456788899999999999997 44321 2333332222333332 55799999999999877 556665
Q ss_pred HHHHHHHHhcCCCceEEEEE
Q 017611 148 AAEEVMMATARNSKVVLLVC 167 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~ 167 (368)
-+.+ .|.+-.+++.
T Consensus 90 fi~E------sN~G~~~~F~ 103 (113)
T PF13788_consen 90 FIYE------SNRGNHFFFV 103 (113)
T ss_pred HHHH------hcCCCeEEEE
Confidence 5543 3445555553
No 38
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=55.98 E-value=1.8e+02 Score=27.31 Aligned_cols=85 Identities=7% Similarity=0.033 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCEEEEEEeecCCCC---CCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecC----CCCCCHH
Q 017611 72 LISVLKYCYELGVKYVTIYAFSIDNFQ---RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGN----LKFLSEP 144 (368)
Q Consensus 72 L~~il~~c~~~GI~~vTvYaFS~eN~k---R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~----l~~Lp~~ 144 (368)
+.+.++.+.++|++.|=+++....-|. .+++++..|.++ +.++|++|-+.|. +..-.++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~gl~ls~h~p~~~nl~s~d~~ 77 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEA--------------LKENNIDVSVHAPYLINLASPDKE 77 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH--------------HHHcCCCEEEECCceecCCCCCHH
Confidence 567889999999999999998887774 344555544332 3357888877663 3333445
Q ss_pred HHHH----HHHHHHHhcCCCceEEEEEecC
Q 017611 145 VRVA----AEEVMMATARNSKVVLLVCLAY 170 (368)
Q Consensus 145 v~~~----i~~~e~~T~~n~~~~LnI~~~Y 170 (368)
++++ +.++.+..+.-+--.+++..++
T Consensus 78 ~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~ 107 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVFHPGS 107 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 5543 4444444333322234444433
No 39
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.72 E-value=1.5e+02 Score=28.44 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.+.++|+.+.||.-|.+-...-|-+.-+.+|-..+++.+.+.... ++.| +.|=-. ..+.++
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~-----------~~~v-i~gv~~---~~~~~~ 84 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG-----------RVPV-IAGTGS---NNTAEA 84 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC-----------CCcE-EeccCC---ccHHHH
Confidence 4678889999999999999999888899999999999998877543321 1111 123211 233444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKN 186 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~ 186 (368)
++.+..+-.-.-+.++.+.=.| .+.++|.+-.+++++.
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 4444443333333334333223 2679999999999875
No 40
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=52.46 E-value=1.6e+02 Score=28.38 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.+.++|+.+.||+-+.+...+-|.+.=+.+|-..+++.+.+... | ++.++--.. ...+..
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~------------~-~~~vi~gv~--~~s~~~ 81 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN------------G-RVPVIAGTG--SNATEE 81 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC------------C-CCeEEEeCC--CccHHH
Confidence 3567888999999999999999998889999999999999887654322 1 222321111 123444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+..-.-+.++.+.=.| .+.++|.+-.+.+++..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 44444443333323333332222 25799999999998764
No 41
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.80 E-value=1.2e+02 Score=29.53 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|+.+.||+-+.+..-+-|-+.-+.+|-..+.+...+... .++.|-+ | ...=..+..
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-----------~~~pvi~-g-v~~~t~~~i 84 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-----------GRVPVLA-G-AGYGTATAI 84 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCCEEE-e-cCCCHHHHH
Confidence 34577899999999999999999998888899999999988876654322 1222222 2 211123344
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+..+.+.=.| .+.++|.+-++++++..
T Consensus 85 ~~a~~a~~~---Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~ 124 (289)
T cd00951 85 AYAQAAEKA---GADGILLLPPYLTEAPQEGLYAHVEAVCKST 124 (289)
T ss_pred HHHHHHHHh---CCCEEEECCCCCCCCCHHHHHHHHHHHHhcC
Confidence 444444433 223344443334 36799999999988753
No 42
>PLN02417 dihydrodipicolinate synthase
Probab=51.77 E-value=1.4e+02 Score=29.03 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.+.++|+.+.||+-+.+-..+-|-+.-+.+|-..+++.+.+... . |+.++.-.. ...+.+
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-----------~--~~pvi~gv~--~~~t~~ 84 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-----------G--KIKVIGNTG--SNSTRE 84 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-----------C--CCcEEEECC--CccHHH
Confidence 3577899999999999999999999999999999999999887644322 1 233433222 123344
Q ss_pred HHHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHhc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY---TSADEIVHAVQESFKN 186 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y---ggrdEI~~Avr~l~~~ 186 (368)
+++.+..+-+-.-+.++.+ -+| .+.++|.+-++.+++.
T Consensus 85 ~i~~a~~a~~~Gadav~~~-~P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHI-NPYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred HHHHHHHHHHcCCCEEEEc-CCccCCCCHHHHHHHHHHHHhh
Confidence 4444444433333333333 232 3579999999988764
No 43
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=51.61 E-value=32 Score=27.83 Aligned_cols=95 Identities=20% Similarity=0.092 Sum_probs=57.6
Q ss_pred cCCcCccCchHHHHHHHHHHHHHHH--HhhcC--------CCCC-CEEEEE--ecCChhHHHhcCCChhhhHHHHHHHHH
Q 017611 7 AGGAAATTPTQLLESLGSFMRRCLF--RVLAV--------GPIP-HHFAFI--MDGNRRYAKKLNVEEGAGHKEGFSSLI 73 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~--------~~iP-~HIAiI--MDGNRR~A~~~gl~~~~GH~~G~~~L~ 73 (368)
.||+++.........+....+++.. ..+.. +.+| +||..+ ++-+.. ........=.+.+.
T Consensus 11 g~Gva~ai~~~~g~~~~~~~~~~~~~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~-------~~~~~~~~L~~~~~ 83 (118)
T PF01661_consen 11 GGGVAKAIFKAAGPALQEECKEIKKKGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSP-------GEKNSYEALESAYR 83 (118)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHHHHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTS-------TSTTHHHHHHHHHH
T ss_pred CchHHHHHHHhchHHHHHHHHHhhcccCcccCCCeeeecCCCccccceEEEecceeccc-------cccccHHHHHHHHH
Confidence 4666655555544444444433322 21222 2344 788766 664422 11112222234456
Q ss_pred HHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHH
Q 017611 74 SVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLM 108 (368)
Q Consensus 74 ~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm 108 (368)
.+++.|.+.+++.|.+=++++.++.=|++++..+|
T Consensus 84 ~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 84 NALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 67777888999999999999999999999998876
No 44
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=49.69 E-value=1.3e+02 Score=27.97 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCC-C--CCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec---C
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF-Q--RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG---N 137 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~-k--R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG---~ 137 (368)
.+..+.+.+.++++.|.++|+++|+++.-..-.- . ++...-+...+ .+.++.. +..++|+++.+-= .
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~----~l~~l~~---~a~~~~i~l~~e~~~~~ 150 (274)
T COG1082 78 EREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAE----ALEELAE---IAEELGIGLALENHHHP 150 (274)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHH----HHHHHHH---HHHHhCCceEEeecCCc
Confidence 3456788888899999999999999876433222 2 12222222222 2333332 1234477766641 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 138 LKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 138 l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
-..+.-. ..+++.+.+.+..|-++.|-++=.|-...+...++++...
T Consensus 151 ~~~~~~~-~~~~~~~~~~~~~~v~~~lD~~H~~~~~~d~~~~~~~~~~ 197 (274)
T COG1082 151 GNVVETG-ADALDLLREVDSPNVGLLLDTGHAFFAGEDPLEAIRKLGD 197 (274)
T ss_pred cceeecC-HHHHHHHHhcCCCceEEEEecCchhhccCCHHHHHHHhhc
Confidence 2222222 3345555666655555555544333332266777766654
No 45
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=49.18 E-value=1.3e+02 Score=28.04 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
...+.+.+.++.|.++|++.|.+..-. ...+-+.+|. .+.+.+.++++++ ...++||++-+-
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~---~~~~~~~l~~l~~---~A~~~gi~l~lE 142 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEA---RATLVENLRYAAD---ALDRIGLTLLIE 142 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHH---HHHHHHHHHHHHH---HHHhcCCEEEEE
Confidence 335788899999999999999876422 1222334443 3444566666553 356789998875
No 46
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=48.20 E-value=2.5e+02 Score=26.66 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHcCCCE---EEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhh
Q 017611 67 EGFSSLISVLKYCYELGVKY---VTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLK 120 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~---vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~ 120 (368)
.-++.+.++++||.+.||+. +.+|....-.|-.+.. .+.+...+..++...+.
T Consensus 13 ~n~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~-~~~~~~~~~~~i~~v~~ 68 (254)
T smart00633 13 FNFSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLS-KETLLARLENHIKTVVG 68 (254)
T ss_pred cChHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCC-HHHHHHHHHHHHHHHHH
Confidence 45677888999999999994 4566555556754311 23444555555555443
No 47
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=48.19 E-value=25 Score=33.54 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=48.7
Q ss_pred HHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHH-HHHH----HHHHHHHHHcCCCEEEEEEeecCCCCCCHHHH
Q 017611 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEG-FSSL----ISVLKYCYELGVKYVTIYAFSIDNFQRKPAEV 104 (368)
Q Consensus 30 l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G-~~~L----~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV 104 (368)
+.+.++... |.|++++.||.+..=|..=.+...+|+.. -+.| ..+-+++..+||+++..- ..|=
T Consensus 41 l~~~~~~~~-p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~----------~~EA 109 (240)
T cd00008 41 LLKLIKEYK-PTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIE----------GYEA 109 (240)
T ss_pred HHHHHHhcC-CCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC----------CcCH
Confidence 344444333 89999999997543344433444444433 1222 333445566788776542 2566
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCC
Q 017611 105 QNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKF 140 (368)
Q Consensus 105 ~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~ 140 (368)
|+++.-+..... ..|.++.++ +|.|+
T Consensus 110 DD~ia~la~~~~----------~~g~~~~I~S~DkD~ 136 (240)
T cd00008 110 DDVIGTLAKKAE----------AEGYKVVIVSGDKDL 136 (240)
T ss_pred HHHHHHHHHHHH----------HcCCeEEEEeCCCCh
Confidence 777665543322 245566554 56554
No 48
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=47.99 E-value=20 Score=34.59 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCCCC--CEEEEEecCC-hhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCC
Q 017611 27 RRCLFRVLAVGPIP--HHFAFIMDGN-RRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVK 85 (368)
Q Consensus 27 ~~~l~~~l~~~~iP--~HIAiIMDGN-RR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~ 85 (368)
+..|.+.|. -+.| -|+..|+|.+ ++.+|+++-....+++.-.-.-..|+.++..+|..
T Consensus 126 q~~l~~~Lg-~~~P~~~H~pll~~~~g~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~ 186 (230)
T cd00418 126 QDWLYEALG-WEPPRFYHFPRLLLEDGTKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWS 186 (230)
T ss_pred HHHHHHHcC-CCCCeEEEeeeeeCCCCCCccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCC
Confidence 344455554 2456 5999999998 78899888777777654222235577788888865
No 49
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=47.41 E-value=2.4e+02 Score=27.10 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-ecCCCCCCHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-IGNLKFLSEPVR 146 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-iG~l~~Lp~~v~ 146 (368)
-.+.+.+.++++.+.||.-+.+...+-|.+.=+.+|-..|++...+... .++.|-+ +|.. ++.
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-----------~~~~vi~gv~~~-----st~ 83 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-----------GRVPVIAGVGAN-----STE 83 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-----------TSSEEEEEEESS-----SHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-----------CceEEEecCcch-----hHH
Confidence 4578899999999999999999888889999999999999887654332 1233322 3432 234
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY---TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y---ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+-+..-+.++ |.-+| .+.++|.+-++.+++..
T Consensus 84 ~~i~~a~~a~~~Gad~v~-v~~P~~~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 84 EAIELARHAQDAGADAVL-VIPPYYFKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp HHHHHHHHHHHTT-SEEE-EEESTSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCceEEE-EeccccccchhhHHHHHHHHHHhhc
Confidence 444444433222223233 33354 67899999999998653
No 50
>PRK09989 hypothetical protein; Provisional
Probab=47.00 E-value=1.7e+02 Score=27.52 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
...+.+.+.++.|.++|+++|.+...... ..++.++ -.+.+.+.|+++++ ...++|+++.+-+
T Consensus 82 ~~~~~l~~~i~~A~~lg~~~v~v~~g~~~-~~~~~~~---~~~~~~~~l~~l~~---~a~~~gv~l~lE~ 144 (258)
T PRK09989 82 EARADIDLALEYALALNCEQVHVMAGVVP-AGEDAER---YRAVFIDNLRYAAD---RFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHHHhCcCEEEECccCCC-CCCCHHH---HHHHHHHHHHHHHH---HHHhcCCEEEEEe
Confidence 34567899999999999999987653221 1222222 23445556666553 3567899987743
No 51
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=46.60 E-value=96 Score=29.12 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
+.+.++++.|.++|+++|.++.... ...-..+| ..+.+.+.|.++.. ...++||++-+-
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~-~~~~~~~~---~~~~~~~~l~~l~~---~a~~~Gv~l~lE 143 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKT-PAGFSSEQ---IHATLVENLRYAAN---MLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCC-CCCCCHHH---HHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 5588999999999999998754221 11112233 23334445555433 355789988773
No 52
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=42.10 E-value=2.2e+02 Score=27.95 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||+-+.+..-+-|-+.=+.+|-..+++.+.+.... ++.|-+ |= . . .+.
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-----------~~pvi~-gv-~--~-~t~ 88 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG-----------RVPVIA-GA-G--G-GTA 88 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC-----------CCcEEE-ec-C--C-CHH
Confidence 345778999999999999999999989999999999999888766543321 122221 22 1 1 334
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
.+++.+..+.+-.-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 89 ~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 89 QAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKST 131 (303)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443332323344343223 47899999999988753
No 53
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.97 E-value=1.9e+02 Score=28.09 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHHHHcCCCEEEEEEee------cCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-CCCCCC-HHHHH
Q 017611 76 LKYCYELGVKYVTIYAFS------IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-NLKFLS-EPVRV 147 (368)
Q Consensus 76 l~~c~~~GI~~vTvYaFS------~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~l~~Lp-~~v~~ 147 (368)
++.+.+.|++.+.+|. | ..|++++.+|+-.... +.+. ..+..|++|++.. +-..-| +.+.+
T Consensus 77 i~~a~~~g~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~---~~i~-------~a~~~G~~v~~~~eda~r~~~~~l~~ 145 (262)
T cd07948 77 ARIAVETGVDGVDLVF-GTSPFLREASHGKSITEIIESAV---EVIE-------FVKSKGIEVRFSSEDSFRSDLVDLLR 145 (262)
T ss_pred HHHHHHcCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHH---HHHH-------HHHHCCCeEEEEEEeeCCCCHHHHHH
Confidence 4667788999998874 3 3688899887533222 1111 2345678888854 455566 55555
Q ss_pred HHHHHHHHhcCCCceEEEEEec--CCCHHHHHHHHHHHHh
Q 017611 148 AAEEVMMATARNSKVVLLVCLA--YTSADEIVHAVQESFK 185 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~--YggrdEI~~Avr~l~~ 185 (368)
.++.+.+.-.. .++||=. +..-+++-+-++.+-+
T Consensus 146 ~~~~~~~~g~~----~i~l~Dt~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 146 VYRAVDKLGVN----RVGIADTVGIATPRQVYELVRTLRG 181 (262)
T ss_pred HHHHHHHcCCC----EEEECCcCCCCCHHHHHHHHHHHHH
Confidence 56666654322 4566544 4445666666655543
No 54
>PRK14976 5'-3' exonuclease; Provisional
Probab=40.96 E-value=86 Score=30.91 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHH----HH-HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHH
Q 017611 29 CLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEG----FS-SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAE 103 (368)
Q Consensus 29 ~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G----~~-~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~E 103 (368)
.+.+.++.. -|.|++++.|+.+.-=|..=.+...+++.. +. .+..+-+++..+||+++..- --|
T Consensus 45 ~l~~ll~~~-~p~~~~v~fD~~~~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g~E 113 (281)
T PRK14976 45 MIFKILKKL-NPSYILIAFDAGRKTFRHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQP----------GYE 113 (281)
T ss_pred HHHHHHHhc-CCCEEEEEEECCCCcccccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC----------CcC
Confidence 344455433 389999999985432122222333333321 11 12223345566898877432 257
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCC
Q 017611 104 VQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKF 140 (368)
Q Consensus 104 V~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~ 140 (368)
=|.++.-+..... ..|..|.++ +|.|+
T Consensus 114 ADDviatla~~~~----------~~g~~v~IvS~DkDl 141 (281)
T PRK14976 114 ADDLIGSLAKKLS----------KQNITVLIYSSDKDL 141 (281)
T ss_pred HHHHHHHHHHHHH----------HCCCeEEEEeCCCCc
Confidence 7777766544332 245566554 56554
No 55
>COG1878 Kynurenine formamidase [Amino acid transport and metabolism]
Probab=40.38 E-value=42 Score=32.21 Aligned_cols=80 Identities=28% Similarity=0.254 Sum_probs=55.7
Q ss_pred EEEEecCChhHHHhcCCChh-hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 017611 43 FAFIMDGNRRYAKKLNVEEG-AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKE 121 (368)
Q Consensus 43 IAiIMDGNRR~A~~~gl~~~-~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~ 121 (368)
|.+|--| |++++|-+.. .-|.-|+. .+.++|+.+.||+-|.+=.+|++.+.....+++.+|
T Consensus 109 ~v~i~Tg---w~~~~~~~~~f~~~~Pg~~--~eaa~~L~e~~VkaVGiDt~s~d~~~~~~~~~H~~l------------- 170 (218)
T COG1878 109 IVLIRTG---WSKRWGDEPAFQYHFPGIS--IEAAEYLIERGVKAVGIDTPSTDPGLSEDFPAHRLL------------- 170 (218)
T ss_pred EEEEEcc---chhhcCCcchhhccCcccC--HHHHHHHHHcCCeEEEecCCccCcccccchHHHHHH-------------
Confidence 6677666 6666666544 46666765 678899999999999999999999877443444332
Q ss_pred hhhhhcCCcEEEEecCCCCCCH
Q 017611 122 QSIVNLYGIRVYFIGNLKFLSE 143 (368)
Q Consensus 122 ~~~~~~~girvr~iG~l~~Lp~ 143 (368)
+.+...-|.-+.+++.||+
T Consensus 171 ---L~~~~~i~E~l~nl~~l~~ 189 (218)
T COG1878 171 ---LSAGILIVENLTNLDKLPA 189 (218)
T ss_pred ---HhCCCEEEEeeccccccCC
Confidence 3344455666777777665
No 56
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=39.95 E-value=3.5e+02 Score=26.24 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCCCCHHHH
Q 017611 69 FSSLISVLKYCYEL-GVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKFLSEPVR 146 (368)
Q Consensus 69 ~~~L~~il~~c~~~-GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~Lp~~v~ 146 (368)
.+.+.+.++|+.+. ||.-+.+-..+-|-+.=+.+|-..+++.+.+... | ++.++ |=-..=.++..
T Consensus 20 ~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~------------~-~~~viagv~~~~~~~ai 86 (288)
T cd00954 20 EDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK------------G-KVTLIAHVGSLNLKESQ 86 (288)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC------------C-CCeEEeccCCCCHHHHH
Confidence 46778899999999 9999999998889999999999998887654322 1 23333 32112123444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+..+.+.=.| -+.+||.+=++.+++..
T Consensus 87 ~~a~~a~~~---Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 87 ELAKHAEEL---GYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444433 233444333223 26799999999998753
No 57
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=39.68 E-value=2.3e+02 Score=27.32 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
--.+.+.+.++|+.+.||+-+.+...+-|-+.=+.+|-..+++.+.+.... .+.|- .|=-. ..+.
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~-----------~~~vi-~gv~~---~~~~ 83 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG-----------RVPVI-AGTGS---NSTA 83 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC-----------CCcEE-eecCC---chHH
Confidence 335778999999999999999999988899999999999998877554321 12211 22111 1334
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY---TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y---ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+.+-.-+.++.+ -+| .+.++|.+-++++++..
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~-pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVV-TPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CCcCCCCCHHHHHHHHHHHHhcC
Confidence 44444444333222323332 233 25799999999998753
No 58
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=39.31 E-value=2.4e+02 Score=24.29 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCCEEEEEE---eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 72 LISVLKYCYELGVKYVTIYA---FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 72 L~~il~~c~~~GI~~vTvYa---FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
...+-+||.+.|+..+-+|. .|--|+.|| +...||+.+ ....+.+=++=++++|..++...
T Consensus 24 ~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp--~l~~ll~~~--------------~~g~vd~vvv~~ldRl~R~~~d~ 87 (140)
T cd03770 24 KAILEEYAKENGLENIRHYIDDGFSGTTFDRP--GFNRMIEDI--------------EAGKIDIVIVKDMSRLGRNYLKV 87 (140)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCH--HHHHHHHHH--------------HcCCCCEEEEeccchhccCHHHH
Confidence 34455688889998888875 466677776 333443322 22345666677788888887777
Q ss_pred HHHHHHHhcC
Q 017611 149 AEEVMMATAR 158 (368)
Q Consensus 149 i~~~e~~T~~ 158 (368)
+.-++.....
T Consensus 88 ~~~~~~l~~~ 97 (140)
T cd03770 88 GLYMEILFPK 97 (140)
T ss_pred HHHHHHHHhh
Confidence 6666655543
No 59
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=37.77 E-value=74 Score=33.50 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCCCEEE---EEecCChhHHHhcCCChh--------------hhHHHH-------------HHHHHHHHHHHHHcCCCE
Q 017611 37 GPIPHHFA---FIMDGNRRYAKKLNVEEG--------------AGHKEG-------------FSSLISVLKYCYELGVKY 86 (368)
Q Consensus 37 ~~iP~HIA---iIMDGNRR~A~~~gl~~~--------------~GH~~G-------------~~~L~~il~~c~~~GI~~ 86 (368)
..+|-|+- +=.|.=+.||+.+|+... .+++.| .+..++.+++|.++|-+.
T Consensus 87 ~~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~ 166 (412)
T TIGR02629 87 PNVSLHIPWDKADPKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKA 166 (412)
T ss_pred CCccccCCCCcCCHHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 36888985 322334589999998533 244444 677889999999999999
Q ss_pred EEEEEeecCCCCCCHHHHHH--HHHHHHHHHHHHhhh
Q 017611 87 VTIYAFSIDNFQRKPAEVQN--LMDLLLEKINELLKE 121 (368)
Q Consensus 87 vTvYaFS~eN~kR~~~EV~~--Lm~L~~~~l~~~~~~ 121 (368)
||||. . |-|+ -|...+. ..+.+.+.|+++..+
T Consensus 167 v~IW~-g-DG~~-yP~Q~~~~~~~~rl~esL~eI~~~ 200 (412)
T TIGR02629 167 LTVWI-G-DGSN-FPGQSNFTRAFERYLDAMKAVYAG 200 (412)
T ss_pred eEEEC-C-CCCC-CcCccchHHHHHHHHHHHHHHHhh
Confidence 99995 4 7777 5566666 667777777776654
No 60
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=37.64 E-value=1.1e+02 Score=26.44 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecC
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGN 137 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~ 137 (368)
+.|+..|.+ .+..-.|..|-|+ +.+-|.|+..+.-.+++.+ ...+||+|.++..
T Consensus 54 Rp~l~~ll~---~~~~g~vd~vvv~--~ldRl~R~~~d~~~~~~~l-------------~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIE---DIEAGKIDIVIVK--DMSRLGRNYLKVGLYMEIL-------------FPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHH---HHHcCCCCEEEEe--ccchhccCHHHHHHHHHHH-------------HhhcCcEEEEecC
Confidence 567766664 4555567765555 4777889877655444322 1235999999864
No 61
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=37.64 E-value=2e+02 Score=27.44 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
=.+.+.+.++|+.+.||.-+.+..-+-|-+.-+.+|-..+++.+.+... ..+.|- .|--. ..+.+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----------~~~~vi-~gv~~---~~~~~ 80 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----------GRVPVI-AGVGA---NSTRE 80 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----------CCCeEE-EecCC---ccHHH
Confidence 3577899999999999999999998899999999999999887755432 112221 23221 22333
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+.+-.-..++.+.=.| .+.++|.+-++++++..
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 44444333332223333333222 35799999999998763
No 62
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.76 E-value=1e+02 Score=35.37 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=39.8
Q ss_pred HHHhhcCCCCCCEEEEEecCChh-HHHhcCCChhhhHHHH-HHHHHHHHHHHH----HcCCCEEEEEEeecCCCCCCHHH
Q 017611 30 LFRVLAVGPIPHHFAFIMDGNRR-YAKKLNVEEGAGHKEG-FSSLISVLKYCY----ELGVKYVTIYAFSIDNFQRKPAE 103 (368)
Q Consensus 30 l~~~l~~~~iP~HIAiIMDGNRR-~A~~~gl~~~~GH~~G-~~~L~~il~~c~----~~GI~~vTvYaFS~eN~kR~~~E 103 (368)
|.+.++.. -|.||+|+.|+.+. | |..=.+...+|+.. -+.|..-+.+|. .+||+++.+-. -|
T Consensus 40 l~~ll~~~-~p~~i~v~FD~~~~tf-R~~~~~~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~i~~~g----------~E 107 (887)
T TIGR00593 40 LLKLLKEE-KPTYVAVAFDSGTPTF-RHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEG----------YE 107 (887)
T ss_pred HHHHHHhc-CCCEEEEEEcCCCCcc-hHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHCCCcEEeeCC----------cc
Confidence 33445433 38999999998652 3 22112222233321 233444444444 58998876532 46
Q ss_pred HHHHHHHHHHHH
Q 017611 104 VQNLMDLLLEKI 115 (368)
Q Consensus 104 V~~Lm~L~~~~l 115 (368)
=|+++.-+..+.
T Consensus 108 ADDiIatla~~~ 119 (887)
T TIGR00593 108 ADDVIATLAKQA 119 (887)
T ss_pred HHHHHHHHHHHH
Confidence 777776555443
No 63
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region. This model represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by pfam model pfam01385, and other proteins.
Probab=36.72 E-value=65 Score=25.08 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHH-HHHcCCCEEEEEE
Q 017611 65 HKEGFSSLISVLKY-CYELGVKYVTIYA 91 (368)
Q Consensus 65 H~~G~~~L~~il~~-c~~~GI~~vTvYa 91 (368)
|..++..+.+.|+| |.+.||.++.|-.
T Consensus 51 ~~~~~~~~~~~l~yka~~~Gi~v~~v~~ 78 (82)
T TIGR01766 51 HQWSFRKLISKIKYKAEEYGIEVIEVNP 78 (82)
T ss_pred HhhhHHHHHHHHHHHHHHcCCeEEEeCc
Confidence 77899999999998 8888999998854
No 64
>PRK01060 endonuclease IV; Provisional
Probab=36.44 E-value=1.6e+02 Score=27.80 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
-....+.+++.+++|.++|+++|.+.. -......+. +...+.+.+.+++++.+ .+||+|-+-
T Consensus 84 r~~s~~~~~~~i~~A~~lga~~vv~h~--G~~~~~~~~--~~~~~~~~e~l~~l~~~-----~~gv~l~iE 145 (281)
T PRK01060 84 LEKSRDFLIQEIERCAALGAKLLVFHP--GSHLGDIDE--EDCLARIAESLNEALDK-----TQGVTIVLE 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcC--CcCCCCCcH--HHHHHHHHHHHHHHHhc-----CCCCEEEEe
Confidence 345678899999999999999999864 111111111 12345555566655432 467877763
No 65
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=35.71 E-value=38 Score=32.84 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=36.8
Q ss_pred HHHHHHhhcC-CCCCCEEEEEecCCh-hHHHhcCCChhhhHHH-HHHHHHHHHHHHHHcCCC
Q 017611 27 RRCLFRVLAV-GPIPHHFAFIMDGNR-RYAKKLNVEEGAGHKE-GFSSLISVLKYCYELGVK 85 (368)
Q Consensus 27 ~~~l~~~l~~-~~iP~HIAiIMDGNR-R~A~~~gl~~~~GH~~-G~~~L~~il~~c~~~GI~ 85 (368)
++.+.+.|.- .|.=.|+..|+++++ +.+|+.|-....+.+. |+. -..|+.++..+|..
T Consensus 135 q~~l~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~~~l~~lr~~G~~-p~ai~~~l~~lG~~ 195 (239)
T cd00808 135 QILLYEALGWEPPKFAHLPLILNPDGKKLSKRKGDTSISDYREEGYL-PEALLNYLALLGWS 195 (239)
T ss_pred HHHHHHHcCCCCCceEeeccccCCCCCcccCCCCCccHHHHHHCCCC-HHHHHHHHHHcCCC
Confidence 3444444431 233379999988764 7778877766666544 443 45577777789875
No 66
>PRK09482 flap endonuclease-like protein; Provisional
Probab=35.53 E-value=59 Score=31.92 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCEEEEEecCChh---HHHhcCCChhhhHHH----H-HHHHHHHHHHHHHcCCCEEEEEEe
Q 017611 21 SLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRR---YAKKLNVEEGAGHKE----G-FSSLISVLKYCYELGVKYVTIYAF 92 (368)
Q Consensus 21 ~~~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR---~A~~~gl~~~~GH~~----G-~~~L~~il~~c~~~GI~~vTvYaF 92 (368)
.++.|. +.|.+.++.- -|.||+++.|+.++ | |..=.+...+|+. . ...+..+-+++..+||+.+.
T Consensus 30 av~gf~-~~l~~ll~~~-~p~~i~v~fD~~~~~~~f-R~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~---- 102 (256)
T PRK09482 30 CVETCQ-HALDKLIRHS-QPTHAVAVFDGDARSSGW-RHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWH---- 102 (256)
T ss_pred HHHHHH-HHHHHHHHHc-CCCEEEEEEeCCCCCccc-HHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEec----
Confidence 344444 3445566533 38999999998654 5 2211222222221 1 12233344566678886643
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCC
Q 017611 93 SIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLK 139 (368)
Q Consensus 93 S~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~ 139 (368)
-+--|=|.++.-+..++. ..|..|.++ +|.|
T Consensus 103 ------~~g~EADDvIatla~~~~----------~~~~~v~I~S~DKD 134 (256)
T PRK09482 103 ------ADGNEADDLIATLAVKVA----------QAGHQATIVSTDKG 134 (256)
T ss_pred ------cCCcCHHHHHHHHHHHHH----------HCCCeEEEEECCCC
Confidence 233577777766544432 245566654 4544
No 67
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.48 E-value=2.3e+02 Score=28.80 Aligned_cols=90 Identities=13% Similarity=0.198 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCC
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLS 142 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp 142 (368)
++...+.+-..++.++|.+.||..+|-= |+.+ .| +++.++|+.+.=||..+.-.
T Consensus 70 ~~~el~~e~~~~L~~~~~~~Gi~~~stp-fd~~-------sv------------------d~l~~~~v~~~KI~S~~~~n 123 (327)
T TIGR03586 70 QEAHTPWEWHKELFERAKELGLTIFSSP-FDET-------AV------------------DFLESLDVPAYKIASFEITD 123 (327)
T ss_pred HHhhCCHHHHHHHHHHHHHhCCcEEEcc-CCHH-------HH------------------HHHHHcCCCEEEECCccccC
Confidence 3455777888999999999999987632 2221 11 23345677777788777777
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhc
Q 017611 143 EPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 143 ~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~ 186 (368)
-++++.+.+ ++.-+.|.-+.+.-+||..|+.-+.+.
T Consensus 124 ~~LL~~va~--------~gkPvilstG~~t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 124 LPLIRYVAK--------TGKPIIMSTGIATLEEIQEAVEACREA 159 (327)
T ss_pred HHHHHHHHh--------cCCcEEEECCCCCHHHHHHHHHHHHHC
Confidence 778777642 244566777778999999999888653
No 68
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=33.90 E-value=78 Score=25.74 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHcCCCEEEEEEeecCC
Q 017611 61 EGAGHKEGFSSLISVLKYC-YELGVKYVTIYAFSIDN 96 (368)
Q Consensus 61 ~~~GH~~G~~~L~~il~~c-~~~GI~~vTvYaFS~eN 96 (368)
...|+-.|.+.+..+++|| .++|+..|.++..+ +|
T Consensus 94 ~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~-~N 129 (142)
T PF13302_consen 94 DYRGKGYGTEALKLLLDWAFEELGLHRIIATVMA-DN 129 (142)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEET-T-
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECc-CC
Confidence 4567888899999999999 58999999988743 45
No 69
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=33.81 E-value=93 Score=34.27 Aligned_cols=89 Identities=26% Similarity=0.360 Sum_probs=62.5
Q ss_pred cccccCCcCccCchHHHHHHHHHHHHHHHHhhcCCCCC--CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 017611 3 RYDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVGPIP--HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCY 80 (368)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iP--~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~ 80 (368)
.|...|+..+.++.++++.+..+-.-++ ..| +| .||||+++-..+|+..- -.|.
T Consensus 36 ~~~~~~~~~~~ty~e~~~~v~~~a~gL~----~lg-~~~gdrvai~a~nr~eW~i~d-------------------~a~~ 91 (613)
T COG1022 36 MYKELGGWEAITYRELYERVRALASGLL----SLG-IPAGDRVAIFAANRPEWAIAD-------------------LAIL 91 (613)
T ss_pred eeecCCcceEeeHHHHHHHHHHHHHHHH----hcC-CCCCCEEEEEeCCCHHHHHHH-------------------HHHH
Confidence 4666788888888888886655433222 222 35 79999999988887631 2488
Q ss_pred HcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCC
Q 017611 81 ELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNL 138 (368)
Q Consensus 81 ~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l 138 (368)
.+|.-.|++|+.|+. +|+..++ +.-++++=|.++.
T Consensus 92 ~~g~v~Vp~y~t~~~------~~~~~iL-----------------~~se~~~i~~e~~ 126 (613)
T COG1022 92 ALGAVSVPIYSTSTP------EQLAYIL-----------------NESESKVIFVENQ 126 (613)
T ss_pred HcCCeEEecCCCCCH------HHHHHHH-----------------hcCCceEEEecch
Confidence 899999999997775 5555443 3456777777764
No 70
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.77 E-value=2.9e+02 Score=27.21 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
|.+-|..+.++|.+.|++.+| -.|+.+ .++.+ .+ .+.+--||-...-.-++++
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~T-ev~d~~-------~v~~~------------------~e-~vdilqIgs~~~~n~~LL~ 116 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVS-EIMSER-------QLEEA------------------YD-YLDVIQVGARNMQNFEFLK 116 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-eeCCHH-------HHHHH------------------Hh-cCCEEEECcccccCHHHHH
Confidence 456677777899999999988 334332 23222 22 2556677877777777777
Q ss_pred HHHHHHHHhcCCCceEEEEEec-CCCHHHHHHHHHHHHhc
Q 017611 148 AAEEVMMATARNSKVVLLVCLA-YTSADEIVHAVQESFKN 186 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~-YggrdEI~~Avr~l~~~ 186 (368)
++.+ ++..++|.=+ ...=+|+..|+..+.+.
T Consensus 117 ~va~--------tgkPVilk~G~~~t~~e~~~A~e~i~~~ 148 (250)
T PRK13397 117 TLSH--------IDKPILFKRGLMATIEEYLGALSYLQDT 148 (250)
T ss_pred HHHc--------cCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 7642 3567888888 78889999999988754
No 71
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=33.44 E-value=4.1e+02 Score=28.56 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=27.9
Q ss_pred CEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHH
Q 017611 85 KYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEP 144 (368)
Q Consensus 85 ~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~ 144 (368)
+-||||+|..+++ +.+...+..-+++.|++... . ..+|+++++ |-..-|+.
T Consensus 48 ~pV~I~~~~s~~~---~~~~~~~~~~v~~lL~eY~~----~-s~~i~~~~i-DP~~~~~~ 98 (552)
T TIGR03521 48 DPVSIDIFLDGEL---PADFRRLQKETRQLLEEFAA----Y-NPNIKFRFV-NPLEEEDE 98 (552)
T ss_pred CCEEEEEEEcCCC---chHHHHHHHHHHHHHHHHHH----h-CCCeEEEEe-CCCCcchh
Confidence 7799999987763 22222233333333333322 1 245999999 44444444
No 72
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.53 E-value=3.7e+02 Score=26.40 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-CCC---CC-CHHH
Q 017611 76 LKYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-NLK---FL-SEPV 145 (368)
Q Consensus 76 l~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~l~---~L-p~~v 145 (368)
++++.+.|++.|.++. +...|++++.+|+-..+.-+.++ .++.|..|++.- +.. .. |+.+
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~----------a~~~G~~v~~~~~d~~~~~r~~~~~~ 149 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEY----------AIKNGIEVNIYLEDWSNGMRDSPDYV 149 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHH----------HHhCCCEEEEEEEeCCCCCcCCHHHH
Confidence 5678889999999998 66788899988765443332222 344677777643 322 33 4455
Q ss_pred HHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 146 RVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 146 ~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
.+.++.++++-. -.++|| +++..=.++.+-++.+.+.
T Consensus 150 ~~~~~~~~~~G~----~~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 150 FQLVDFLSDLPI----KRIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHHHHHHcCC----CEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 555655555422 246666 3455566776666666443
No 73
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=32.02 E-value=93 Score=26.97 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
+.+..+++.|.+.|++.|.+=++|+.++.=|++++...|-
T Consensus 92 ~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~ 131 (137)
T cd02903 92 DIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMF 131 (137)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHH
Confidence 3346778888999999999999999999999999887764
No 74
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=31.86 E-value=1.3e+02 Score=31.30 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~ 97 (368)
+..+.+.+.++++.++|+..+++|.++...+
T Consensus 215 qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~ 245 (455)
T TIGR00538 215 QTKESFAKTLEKVAELNPDRLAVFNYAHVPW 245 (455)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCccccc
Confidence 4668889999999999999999999975444
No 75
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=31.15 E-value=1.5e+02 Score=26.11 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
....++++.|.+.|++.|.+=++|+.++.=|+++...+|-
T Consensus 94 ~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l 133 (140)
T cd02905 94 SCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIAL 133 (140)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHH
Confidence 3456779999999999999999999999999999887753
No 76
>PHA02567 rnh RnaseH; Provisional
Probab=30.86 E-value=2.7e+02 Score=28.29 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCCCEEEEEecCCh--hHHHhcCCChhhhHHHH------------HHHHHHHHH-HHHHcCCCEEEEEEeecCCCCCCH
Q 017611 37 GPIPHHFAFIMDGNR--RYAKKLNVEEGAGHKEG------------FSSLISVLK-YCYELGVKYVTIYAFSIDNFQRKP 101 (368)
Q Consensus 37 ~~iP~HIAiIMDGNR--R~A~~~gl~~~~GH~~G------------~~~L~~il~-~c~~~GI~~vTvYaFS~eN~kR~~ 101 (368)
.+.|.||++..|+.+ -| |..=.+...+|+.. ++.+..+++ ++..+||+.+.+ +.
T Consensus 60 k~~~~~i~vaFD~~~~~tf-R~elyp~YKAnR~~~Peel~~q~~~l~~~l~~ii~el~~~~gi~~l~~----------~g 128 (304)
T PHA02567 60 KEEYPEIVLAFDNSKSGYW-RRDIAWYYKKNRKKDREESPWDWEGLFEAINKIVDEIKENMPYKVMKI----------DK 128 (304)
T ss_pred cCCCCeEEEEEeCCCCCCc-hhhhhhHhhcCCCCCChHHHHHHHHhhhhHHHHHHHHHHHCCCCEEEe----------CC
Confidence 556899999999863 23 22222333333332 222334444 344459876443 33
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCC
Q 017611 102 AEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKF 140 (368)
Q Consensus 102 ~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~ 140 (368)
.|=|.++.-+..++. ..|..|-++ ||.++
T Consensus 129 ~EADDvIgTLA~k~~----------~~g~~VvIvS~DKDl 158 (304)
T PHA02567 129 AEADDIIAVLTKKFS----------AEGRPVLIVSSDGDF 158 (304)
T ss_pred ccHHHHHHHHHHHHH----------hCCCcEEEEeCCCCh
Confidence 677888776655443 245666664 55543
No 77
>PRK12677 xylose isomerase; Provisional
Probab=30.46 E-value=6.2e+02 Score=26.07 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe------------cCC
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI------------GNL 138 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i------------G~l 138 (368)
.+.+.++.+.++|++.|++..--...|..+..|-+...+ .+.+ .+.++|++|-.+ |.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~----~lk~------~l~~~GL~v~~v~~n~f~~p~~~~g~l 101 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIK----RFKK------ALDETGLVVPMVTTNLFTHPVFKDGAF 101 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHH----HHHH------HHHHcCCeeEEEecCCCCCccccCCcC
Confidence 467889999999999999864222334444433222222 1222 234678887754 234
Q ss_pred CCCCHHHHHH----HHHHHHHhcCCCceEEEEEecCC
Q 017611 139 KFLSEPVRVA----AEEVMMATARNSKVVLLVCLAYT 171 (368)
Q Consensus 139 ~~Lp~~v~~~----i~~~e~~T~~n~~~~LnI~~~Yg 171 (368)
...++.+++. +.++.+.-+.-+--.++|..++.
T Consensus 102 ts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~ 138 (384)
T PRK12677 102 TSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGRE 138 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCC
Confidence 4556666666 33334433332233444545543
No 78
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=30.36 E-value=1e+02 Score=32.83 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCC----------CCC-CHHHHHHHHHHHHHHHHH
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDN----------FQR-KPAEVQNLMDLLLEKINE 117 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN----------~kR-~~~EV~~Lm~L~~~~l~~ 117 (368)
.+..+.+.+.++.+.++++..+|+|.+++.- ++- +.+|+..+++++.+.+.+
T Consensus 332 gEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 332 GEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred CCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999998632 221 235677777777766664
No 79
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.18 E-value=4e+02 Score=29.32 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=61.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEE-EEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe---
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTI-YAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI--- 135 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTv-YaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i--- 135 (368)
+-.+-=..|+..|.+.++-|..+||+.|-. =-|.++ +.+|++.+.+.+ .+.|+.+-+.
T Consensus 349 en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~D----Te~Ei~~I~~~c--------------~e~Gv~va~~~~~ 410 (557)
T PRK13505 349 ENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTD----TDAEIAALKELC--------------EELGVEVALSEVW 410 (557)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC----CHHHHHHHHHHH--------------HHcCCCEEEeccc
Confidence 344566789999999999999999997654 445554 345877665543 2356643211
Q ss_pred -----cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcc
Q 017611 136 -----GNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 136 -----G~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~ 187 (368)
|.+ ++.+++-++.+. ... ++-+-|...+.|.+.++.++++.
T Consensus 411 ~~Gg~Gai-----~LA~aVveA~~~--~~s----~f~~lY~~d~sl~eKIe~IAkkI 456 (557)
T PRK13505 411 AKGGEGGV-----ELAEKVVELIEE--GES----NFKPLYDDEDSLEEKIEKIATKI 456 (557)
T ss_pred ccCCcchH-----HHHHHHHHHHhc--CCC----CCceecCCCCcHHHHHHHHHHHc
Confidence 533 333333333221 111 23456988899999999998873
No 80
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=30.01 E-value=46 Score=31.33 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=21.6
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|+|++ .-.|+.++.+|++|+.+
T Consensus 87 ~hIaYiP~~~--------------~ViGLSKl~RiV~~~ar 113 (188)
T PLN03044 87 IHVGYIPNAG--------------VILGLSKLARIAEVYAR 113 (188)
T ss_pred EEEEEECCCC--------------ccccHHHHHHHHHHHhc
Confidence 5999999732 35899999999998643
No 81
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=29.87 E-value=4.2e+02 Score=24.47 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCC--CCHH-
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKF--LSEP- 144 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~--Lp~~- 144 (368)
+...+.+++++|.++|...+-++. ...+.+...+.+.|. + .+.++|+.+-.++-... +.++
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~--~~~~~~~~~~~~~l~--------~------~l~~~gl~i~~~~~~~~~~~~~~~ 76 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP--GDLFPADYKELAELK--------E------LLADYGLEITSLAPFSNNLLSPDE 76 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC--cccCCchhhhHHHHH--------H------HHHHcCcEEEeecccCCCcCCCch
Confidence 345678899999999988888886 344444433322221 1 24567888877554332 2222
Q ss_pred -----HHHHHHHHHHHhcCCCceEEEEEec-CCCHH----------HHHHHHHHHHhc
Q 017611 145 -----VRVAAEEVMMATARNSKVVLLVCLA-YTSAD----------EIVHAVQESFKN 186 (368)
Q Consensus 145 -----v~~~i~~~e~~T~~n~~~~LnI~~~-Yggrd----------EI~~Avr~l~~~ 186 (368)
....+.++.+..+.-+.-+++++.+ +.+.+ ....++++++.-
T Consensus 77 ~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 134 (274)
T COG1082 77 EEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEI 134 (274)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHH
Confidence 1344444555444444445555554 44443 356666666543
No 82
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=29.82 E-value=1.9e+02 Score=25.76 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHH-HHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLM-DLLLEKI 115 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm-~L~~~~l 115 (368)
..+..+++.|.+.|++.|.+=++|+.++.=|++++...| +.+.+++
T Consensus 92 ~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl 138 (165)
T cd02908 92 SCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFL 138 (165)
T ss_pred HHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHH
Confidence 456677788888999999999999999999999988776 3344443
No 83
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=29.59 E-value=5.1e+02 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
..++.+.+.++.+.+.|+..|.+...-+... +.+|+..+.+++ .+.|+.+|++-
T Consensus 141 ~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~--n~~ei~~l~~~~--------------~~~gv~v~~ie 194 (331)
T PRK00164 141 DRLDQVLAGIDAALAAGLTPVKVNAVLMKGV--NDDEIPDLLEWA--------------KDRGIQLRFIE 194 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCcEEEEEEEECCC--CHHHHHHHHHHH--------------HhCCCeEEEEE
Confidence 3578899999999999995565543222222 226776665543 24578888873
No 84
>PRK08508 biotin synthase; Provisional
Probab=29.32 E-value=1.3e+02 Score=29.34 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEE
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYV 87 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~v 87 (368)
||-+..+-+.+.+.+..+++++.|
T Consensus 160 GlGEt~ed~~~~l~~lr~L~~~sv 183 (279)
T PRK08508 160 GLGESWEDRISFLKSLASLSPHST 183 (279)
T ss_pred ecCCCHHHHHHHHHHHHcCCCCEE
Confidence 444444444445555555554443
No 85
>PRK05481 lipoyl synthase; Provisional
Probab=28.96 E-value=1.1e+02 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
||-+..+...+.++...++|+..+.+|.||.
T Consensus 205 GfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 205 GLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 7767778888999999999999999999998
No 86
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=28.59 E-value=4.2e+02 Score=26.40 Aligned_cols=106 Identities=24% Similarity=0.278 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH---HHHHHHHHhhhhhhhhcCCcEEEE---ec-CCC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL---LLEKINELLKEQSIVNLYGIRVYF---IG-NLK 139 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L---~~~~l~~~~~~~~~~~~~girvr~---iG-~l~ 139 (368)
.|+-+ .+.++|..+.+|+.|++=-| -+| +-+...+.+ ...+++.+. .+.+.|+||-. || +..
T Consensus 95 vGfvd-E~~~eklk~~~vdvvsLDfv-gDn-----~vIk~vy~l~ksv~dyl~~l~----~L~e~~irvvpHitiGL~~g 163 (275)
T COG1856 95 VGFVD-ESDLEKLKEELVDVVSLDFV-GDN-----DVIKRVYKLPKSVEDYLRSLL----LLKENGIRVVPHITIGLDFG 163 (275)
T ss_pred eeecc-HHHHHHHHHhcCcEEEEeec-CCh-----HHHHHHHcCCccHHHHHHHHH----HHHHcCceeceeEEEEeccC
Confidence 34444 67889999999999998644 455 556666666 556666543 47788888753 45 333
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CceEEEEEecCCCH----------HHHHHHHHHHHhcc
Q 017611 140 FLSEPVRVAAEEVMMATARN-SKVVLLVCLAYTSA----------DEIVHAVQESFKNK 187 (368)
Q Consensus 140 ~Lp~~v~~~i~~~e~~T~~n-~~~~LnI~~~Yggr----------dEI~~Avr~l~~~~ 187 (368)
.+.-+. ++|+ ....-+ +-++|++.++|-|. +|++++++..-+..
T Consensus 164 ki~~e~-kaId---iL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f 218 (275)
T COG1856 164 KIHGEF-KAID---ILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKF 218 (275)
T ss_pred cccchH-HHHH---HHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhC
Confidence 344433 2222 222223 46999999999875 68888887654443
No 87
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=28.37 E-value=44 Score=31.19 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.4
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|+|| .-.|+.+|.++++|+.+
T Consensus 82 ~hVaYiP~~---------------~ViGLSKl~RiV~~~ar 107 (180)
T TIGR00063 82 AHVAYIPKD---------------KVIGLSKIARIVEFFAR 107 (180)
T ss_pred EEEEEecCC---------------ceecHHHHHHHHHHHhc
Confidence 599999975 25899999999998643
No 88
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=28.18 E-value=5e+02 Score=24.28 Aligned_cols=61 Identities=23% Similarity=0.440 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~ 134 (368)
--+...+.+.+.++.|.++|++.|+++.=.. ...+.+ .-++.+.+.+.+++.. ++||++-+
T Consensus 78 ~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~--~~~~~e---~~~~~~~~~l~~l~~~-----~~gv~l~l 138 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVFHPGSY--LKQSKE---EALNRIIESLNEVIDE-----TKGVVILL 138 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccc--cCCCHH---HHHHHHHHHHHHHHhc-----cCCcEEEE
Confidence 3457788999999999999999999875211 122222 2345555666666542 57877654
No 89
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.08 E-value=1.6e+02 Score=30.73 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~ 97 (368)
+..+.+.+.++++.++|++.+++|.++..-|
T Consensus 216 qt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~ 246 (453)
T PRK13347 216 QTVESFRETLDKVIALSPDRIAVFGYAHVPS 246 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccc
Confidence 4567888999999999999999999864433
No 90
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=27.52 E-value=53 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.7
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|+|| .-.|+.+|.++++|+.+
T Consensus 90 ~hIaYiP~~---------------~ViGLSKl~Riv~~~ar 115 (188)
T PRK09347 90 AHVAYIPKG---------------KVIGLSKIARIVDFFAR 115 (188)
T ss_pred EEEEEeCCC---------------ccccHHHHHHHHHHHHc
Confidence 599999965 36899999999998654
No 91
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=27.14 E-value=1.8e+02 Score=24.18 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEE
Q 017611 27 RRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89 (368)
Q Consensus 27 ~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTv 89 (368)
+..|.......+=+..|-+..|++ .-++.+.++++.|.+.|+..+++
T Consensus 79 ~~~l~~~~~~~~~~~~v~i~aD~~----------------~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 79 EARLKELKQKNPDPVRVLIRADKD----------------APYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp HHHHHHHCCC-TTS--EEEEE-TT----------------S-HHHHHHHHHHHHHTT---EE-
T ss_pred HHHHHHhhccCCCcceEEEEeCCC----------------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 344444444333334799999987 44577999999999999998875
No 92
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=26.67 E-value=5.2e+02 Score=25.11 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHH-cCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 69 FSSLISVLKYCYE-LGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 69 ~~~L~~il~~c~~-~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
.+.+.+.++|+.+ .||.-+.+-...-|.+.=+.+|-..+++...+.... |+.++--.. ...+.+
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~-------------~~~viagvg--~~~t~~ 87 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG-------------KVKLIAQVG--SVNTAE 87 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC-------------CCCEEecCC--CCCHHH
Confidence 4678889999999 999999999999999999999999998877544321 222322221 123344
Q ss_pred HHHHHHHHhcCCCceEEEEEecCC---CHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAYT---SADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Yg---grdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+.++.+ -+|- +.++|.+-++++++..
T Consensus 88 ai~~a~~a~~~Gad~v~v~-~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 88 AQELAKYATELGYDAISAV-TPFYYPFSFEEICDYYREIIDSA 129 (293)
T ss_pred HHHHHHHHHHcCCCEEEEe-CCcCCCCCHHHHHHHHHHHHHhC
Confidence 4444443333232333433 3432 5689999999988764
No 93
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=25.54 E-value=3e+02 Score=30.25 Aligned_cols=86 Identities=23% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcC
Q 017611 79 CYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158 (368)
Q Consensus 79 c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~ 158 (368)
..+-|+..-=.+|||.|. -.+-=|+..|.--.+.|.+.+ ++|..+.|+||...+.++|-+++.++-..-.+
T Consensus 493 ~~~~G~~~~l~~AfSRdq--~~KiYVQd~lre~~del~~~l-------~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~ 563 (587)
T COG0369 493 YLKDGVLTRLDLAFSRDQ--EEKIYVQDRLREQADELWEWL-------EEGAHIYVCGDAKGMAKDVEEALLDILAKEGG 563 (587)
T ss_pred HHhcCCceeEEEEEeecC--CCCccHHHHHHHhHHHHHHHH-------HCCCEEEEeCCCccchHHHHHHHHHHHHhcCC
Confidence 345676666677888876 223335555444444444433 45799999999999999999999887764322
Q ss_pred CCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 159 NSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 159 n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
-+++|-...++++-+
T Consensus 564 ------------~s~eea~~~l~~lk~ 578 (587)
T COG0369 564 ------------LSREEAEEYLKELKK 578 (587)
T ss_pred ------------CcHHHHHHHHHHHHh
Confidence 245666666666644
No 94
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=25.53 E-value=51 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.4
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|+|| .-.|+.++.+|++|+.+
T Consensus 87 ~~VaYiP~~---------------~ViGLSKl~RiV~~~ar 112 (185)
T cd00642 87 VHIAYIPKD---------------KVIGLSKLARIVEFFSR 112 (185)
T ss_pred EEEEEecCC---------------eeeeHHHHHHHHHHHhc
Confidence 589999974 35899999999999654
No 95
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=25.42 E-value=80 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCC
Q 017611 61 EGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96 (368)
Q Consensus 61 ~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN 96 (368)
...|.-.|-+-+..+++||.+.|++.|.+... .+|
T Consensus 96 ~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~-~~N 130 (150)
T PLN02706 96 AARGKGLGKKIIEALTEHARSAGCYKVILDCS-EEN 130 (150)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCCEEEEEec-ccc
Confidence 44567788899999999999999999999975 456
No 96
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=25.26 E-value=3e+02 Score=27.32 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=48.9
Q ss_pred CCEEEEEe--cCChh-HHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH
Q 017611 40 PHHFAFIM--DGNRR-YAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL 110 (368)
Q Consensus 40 P~HIAiIM--DGNRR-~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L 110 (368)
|.+|.||- =-|.+ ..+..+....+=-..=-+++..||+.|...|++.|-+=||--..|.=++.+|..++.-
T Consensus 159 p~~vsvIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~e 232 (266)
T TIGR02452 159 PFLASFITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHD 232 (266)
T ss_pred CceeeEEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHH
Confidence 55677773 23432 3333333221111233467888999999999999999999999999999999988653
No 97
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.16 E-value=6.5e+02 Score=24.59 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.+.++|+.+.||.-+.+-..+-|-+.=+.+|-..+++.+.+... .++.| +.|=-. ..+..
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-----------g~~pv-i~gv~~---~~t~~ 83 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-----------GRIPF-APGTGA---LNHDE 83 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEECCc---chHHH
Confidence 3577899999999999999999998899999999999999886644321 12333 123221 23344
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+.++.+.=-| .+.++|++-++.+++..
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 44444443332223333332112 25799999999998753
No 98
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=25.09 E-value=1.7e+02 Score=24.83 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLL 111 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~ 111 (368)
+.+..+++.|.+.+++.|.+=++++-+..=|++++..+|...
T Consensus 90 ~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~ 131 (133)
T cd03330 90 KATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEV 131 (133)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHH
Confidence 345567778888999999999999999999999999988643
No 99
>cd03767 SR_Res_par Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subgroup is composed of proteins similar to the E. coli resolvase found in the par region of the RP4 plasmid, which encodes a highly efficient partitioning system. This protein is part of a complex stabilization system involved in the resolution of plasmid dimers during cell division. Similar to Tn3 and other resolvases, members of this family may contain a C-terminal DNA binding domain.
Probab=25.09 E-value=3.5e+02 Score=23.54 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCEEEEEE--eecCCCCCC
Q 017611 72 LISVLKYCYELGVKYVTIYA--FSIDNFQRK 100 (368)
Q Consensus 72 L~~il~~c~~~GI~~vTvYa--FS~eN~kR~ 100 (368)
...+-+||...|+..+-+|. .|-.+.+||
T Consensus 18 ~~~l~~~a~~~g~~~~~i~~d~~SG~~~~Rp 48 (146)
T cd03767 18 KESLEAFATERGFYIAGFYVENASGAKLDRP 48 (146)
T ss_pred HHHHHHHHHHCCCEEEEEEEECCcCCCCCCH
Confidence 34556778888888777776 444455554
No 100
>PRK12677 xylose isomerase; Provisional
Probab=24.88 E-value=2.8e+02 Score=28.57 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhc--CCcEEEEe
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRK-PAEVQNLMDLLLEKINELLKEQSIVNL--YGIRVYFI 135 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~-~~EV~~Lm~L~~~~l~~~~~~~~~~~~--~girvr~i 135 (368)
+...+.+++.|++|.++|++.|+++. -.+...-+ ...+..-.+.+.+.|.+++.. ..+ +||+|-+=
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~-G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~---A~~~G~gV~laIE 178 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWG-GREGAEYDAAKDVRAALDRYREAIDLLAAY---VKDQGYDLRFALE 178 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEee-CCCCccCcccCCHHHHHHHHHHHHHHHHHH---HHhcCCCcEEEEc
Confidence 34578899999999999999999984 11111000 112334556666677766643 334 45776553
No 101
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=24.64 E-value=1.6e+02 Score=30.62 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCC
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~k 98 (368)
.+.+.+.++.+.++|+++||+|.+.++++.
T Consensus 203 ~~~~~~~l~~a~~l~pdhis~y~L~~~p~t 232 (416)
T COG0635 203 LESLKEDLEQALELGPDHLSLYSLAIEPGT 232 (416)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeeecCCCc
Confidence 466888999999999999999999998863
No 102
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=24.47 E-value=3.8e+02 Score=21.94 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecC
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGN 137 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~ 137 (368)
+.|+..|.+-++ .+.. |...+.+-+.|+..|.-.++.++ ..+||+|.++..
T Consensus 42 R~~~~~ll~~~~-----~~d~--lvv~~~dRl~R~~~e~~~~~~~l--------------~~~gi~l~~~~~ 92 (126)
T cd03768 42 RPELQKLLEDLR-----EGDT--LVVTKLDRLGRSTKDLLEIVEEL--------------REKGVSLRSLTE 92 (126)
T ss_pred CHHHHHHHHhCc-----CCCE--EEEEEcchhcCcHHHHHHHHHHH--------------HHCCCEEEEecC
Confidence 567777776554 4554 55567788999988766555433 357999999853
No 103
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=24.32 E-value=80 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEE
Q 017611 62 GAGHKEGFSSLISVLKYCYELGVKYVTI 89 (368)
Q Consensus 62 ~~GH~~G~~~L~~il~~c~~~GI~~vTv 89 (368)
..|+..|...+..++++|.+.|+..+-+
T Consensus 37 ~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 37 YRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred HcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3466788888999999999999988765
No 104
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.12 E-value=5.6e+02 Score=24.80 Aligned_cols=101 Identities=10% Similarity=0.007 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.=.+.+.+.++|..+.||+-|.+-.-+-|-+.=+.+|-..+.+.+.+.. .+| +--+|.. =.++..
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~------------~~v-i~gvg~~--~~~~ai 81 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT------------DKV-IFQVGSL--NLEESI 81 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc------------CCE-EEEeCcC--CHHHHH
Confidence 3357788999999999999999999888999999999999888764321 122 2224432 234444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHh
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY---TSADEIVHAVQESFK 185 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y---ggrdEI~~Avr~l~~ 185 (368)
+.++.+++.-+ +.++.+.=-| .+.++|.+=++++++
T Consensus 82 ~~a~~a~~~Ga---d~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 82 ELARAAKSFGI---YAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred HHHHHHHHcCC---CEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 44544444332 3344333223 367899988888877
No 105
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.84 E-value=2.4e+02 Score=24.15 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHcC
Q 017611 69 FSSLISVLKYCYELG 83 (368)
Q Consensus 69 ~~~L~~il~~c~~~G 83 (368)
++.+.+.++.+.+.|
T Consensus 135 ~~~~~~~i~~~~~~g 149 (216)
T smart00729 135 VEDVLEAVEKLREAG 149 (216)
T ss_pred HHHHHHHHHHHHHhC
Confidence 355666666666666
No 106
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=23.82 E-value=4.4e+02 Score=28.80 Aligned_cols=106 Identities=23% Similarity=0.183 Sum_probs=67.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEE-EEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCC
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYV-TIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNL 138 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~v-TvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l 138 (368)
+-.+.=+.|+..|.+-++-..++|++.| .|-.|++| +.+|++.+.+.+. +.|+++-+.--.
T Consensus 333 en~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~D----t~~Ei~~v~~~~~--------------~~g~~~~~~~~~ 394 (524)
T cd00477 333 ENLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTD----TDAELALVRKLAE--------------EAGAFVAVSEHW 394 (524)
T ss_pred cCHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCC----CHHHHHHHHHHHH--------------HcCCCEEEehhh
Confidence 3455678999999999999999999965 45557776 6799998876552 345555544111
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcc
Q 017611 139 KFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 139 ~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~ 187 (368)
..=-+--.+.++.+.++....+ ++-+-|.--+.|.+-++.++++.
T Consensus 395 ~~GG~Ga~eLA~~Vi~a~e~~s----~fk~LY~~~~si~eKIetIAk~I 439 (524)
T cd00477 395 AEGGKGAVELAEAVIEACEQPS----EFKFLYDLEDPLEDKIETIAKKI 439 (524)
T ss_pred hhhhhhHHHHHHHHHHHhcCCC----CCccccCCCCCHHHHHHHHHHHc
Confidence 1112222333333343333222 23456888888888888888763
No 107
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=23.26 E-value=2.5e+02 Score=28.75 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=54.5
Q ss_pred HHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEE--E---ecC--CCCC-CH
Q 017611 77 KYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVY--F---IGN--LKFL-SE 143 (368)
Q Consensus 77 ~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr--~---iG~--l~~L-p~ 143 (368)
+.+.++|++.|.+|. |+..|++++.+|+-..+.-+.++ .++.|.+|+ + .|- -... |+
T Consensus 128 e~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~----------Ak~~Gl~v~~~is~~fg~p~~~r~~~~ 197 (347)
T PLN02746 128 EAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALA----------AKKHSIPVRGYVSCVVGCPIEGPVPPS 197 (347)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHH----------HHHcCCeEEEEEEeeecCCccCCCCHH
Confidence 556788999999984 33468889988876654433222 334677776 2 331 1223 44
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEe--cCCCHHHHHHHHHHHHhc
Q 017611 144 PVRVAAEEVMMATARNSKVVLLVCL--AYTSADEIVHAVQESFKN 186 (368)
Q Consensus 144 ~v~~~i~~~e~~T~~n~~~~LnI~~--~YggrdEI~~Avr~l~~~ 186 (368)
.+.+.++++.++-.+ .++||= ++.-=.++.+-++.+.+.
T Consensus 198 ~l~~~~~~~~~~Gad----~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 198 KVAYVAKELYDMGCY----EISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHHHcCCC----EEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 555556666654222 455553 344445666555555443
No 108
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.25 E-value=3.3e+02 Score=28.11 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCC---CCC----CHHHHHHHHHHHHHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDN---FQR----KPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN---~kR----~~~EV~~Lm~L~~~~l~ 116 (368)
+..+.+.+.++++.++|+..+++|.+..+- +.+ ..++...+++.+.+.|.
T Consensus 205 qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~ 261 (430)
T PRK08208 205 QTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLL 261 (430)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999987543 211 22444455555554443
No 109
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=23.18 E-value=6.3e+02 Score=25.86 Aligned_cols=96 Identities=14% Similarity=0.027 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHc-CCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHH
Q 017611 66 KEGFSSLISVLKYCYEL-GVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEP 144 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~-GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~ 144 (368)
.+..+.+.++++...+. |++.+++.-+--|-+-|+..-...+.+++.. .....++.+.+.-|-.+|.++
T Consensus 47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~----------~~~~~~i~~~i~TNG~ll~~e 116 (412)
T PRK13745 47 VMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKK----------YARGRQIDNCIQTNGTLLTDE 116 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHH----------HcCCCceEEEEeecCEeCCHH
Confidence 46778888898887764 7888877644578888875433333332221 123457888888898999998
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHH
Q 017611 145 VRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQ 181 (368)
Q Consensus 145 v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr 181 (368)
..+.+.+ + + +.|.+|-.|-.|+-++.|
T Consensus 117 ~~~~l~~-------~-~--~~v~ISlDG~~~~hD~~R 143 (412)
T PRK13745 117 WCEFFRE-------N-N--FLVGVSIDGPQEFHDEYR 143 (412)
T ss_pred HHHHHHH-------c-C--eEEEEEecCCHHHhhhhc
Confidence 8776643 2 2 377888777777776665
No 110
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=23.17 E-value=5e+02 Score=28.76 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=66.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEE-EEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCC
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVT-IYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNL 138 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vT-vYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l 138 (368)
+..+.=+.|+..|.+-++-..++||+.|- |-.|++| +.+|++.|.+++. +.|+++-+.--.
T Consensus 378 enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~D----t~~Ei~~l~~~~~--------------~~g~~~~v~~~w 439 (587)
T PRK13507 378 ENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTD----THAEIAIVRRLAE--------------QAGARVAVSRHW 439 (587)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCC----CHHHHHHHHHHHH--------------HcCCCEEEechh
Confidence 34556778999999999999999999654 4446655 6789998876652 234544432211
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcc
Q 017611 139 KFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 139 ~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~ 187 (368)
..=-+--.+.++++.++..+.++ +-+-|.-.+.|.+-++.++++.
T Consensus 440 a~GGeGa~eLA~~Vv~a~e~~s~----fk~LYd~~~sI~EKIetIAkeI 484 (587)
T PRK13507 440 EKGGEGALELADAVIDACNEPND----FKFLYPLEMPLRERIETIAREV 484 (587)
T ss_pred hccchhHHHHHHHHHHHhhCcCC----CcccCCCCCCHHHHHHHHHHHc
Confidence 12223333444444444443222 3445888888888888888773
No 111
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.15 E-value=86 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCC
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDN 96 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN 96 (368)
.+-|.++++.|.+.||+++-=|.|+.++
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d~ 70 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWDE 70 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecCh
Confidence 3789999999999999999999999764
No 112
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=22.91 E-value=8.6e+02 Score=25.59 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=37.9
Q ss_pred EecCC---CCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhc
Q 017611 134 FIGNL---KFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 134 ~iG~l---~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~ 186 (368)
++|-- ...+|.++.++..+......| +. .-+.-|||+..|-+.-+++.+++
T Consensus 302 vvGsPT~~~~~~p~i~~~l~~v~~~~~~~-k~-~~vfgS~GW~g~av~~i~~~l~~ 355 (388)
T COG0426 302 VVGSPTINGGAHPPIQTALGYVLALAPKN-KL-AGVFGSYGWSGEAVDLIEEKLKD 355 (388)
T ss_pred EEecCcccCCCCchHHHHHHHHHhccCcC-ce-EEEEeccCCCCcchHHHHHHHHh
Confidence 56653 457888888888766554433 33 66677999999999999998876
No 113
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=22.65 E-value=7.2e+02 Score=24.22 Aligned_cols=103 Identities=12% Similarity=0.045 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCCCCHHH
Q 017611 68 GFSSLISVLKYCYELG-VKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKFLSEPV 145 (368)
Q Consensus 68 G~~~L~~il~~c~~~G-I~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~Lp~~v 145 (368)
-.+.+.+.++|+.+.| |.-+.+..-.-|.+.=+.+|-..+++.+.+.... |+-++ |=-..=.++.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~-------------~~pvi~gv~~~~t~~~ 85 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD-------------QIALIAQVGSVNLKEA 85 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC-------------CCcEEEecCCCCHHHH
Confidence 3577889999999999 9999999888898989999999988776543321 22232 2111223455
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhc
Q 017611 146 RVAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKN 186 (368)
Q Consensus 146 ~~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~ 186 (368)
.+.++.+++.-. +.++.+.=.| .+.+||.+-.+++++.
T Consensus 86 i~la~~a~~~Ga---d~v~v~~P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 86 VELGKYATELGY---DCLSAVTPFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred HHHHHHHHHhCC---CEEEEeCCcCCCCCHHHHHHHHHHHHhh
Confidence 555555544422 3333333223 2469999999998765
No 114
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=22.53 E-value=1.9e+02 Score=25.61 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLM 108 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm 108 (368)
.....+++.+.+.+++.|.+=++||..+.=|+++...+|
T Consensus 104 ~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~ 142 (147)
T cd02906 104 KCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIA 142 (147)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHH
Confidence 456677788899999999999999999999999988765
No 115
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.52 E-value=5.1e+02 Score=24.16 Aligned_cols=68 Identities=24% Similarity=0.393 Sum_probs=44.9
Q ss_pred EEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 017611 42 HFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKE 121 (368)
Q Consensus 42 HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~ 121 (368)
-|+||| |-+.-++.+.+..+.+.++||++-.--+ |- .|.|+.+... .++
T Consensus 4 ~V~IIM----------------GS~SD~~~mk~Aa~~L~~fgi~ye~~Vv-SA---HRTPe~m~~y-------a~~---- 52 (162)
T COG0041 4 KVGIIM----------------GSKSDWDTMKKAAEILEEFGVPYEVRVV-SA---HRTPEKMFEY-------AEE---- 52 (162)
T ss_pred eEEEEe----------------cCcchHHHHHHHHHHHHHcCCCeEEEEE-ec---cCCHHHHHHH-------HHH----
Confidence 799999 4456667888889999999999865433 33 4888843322 221
Q ss_pred hhhhhcCCcEEEEec--CCCCCCH
Q 017611 122 QSIVNLYGIRVYFIG--NLKFLSE 143 (368)
Q Consensus 122 ~~~~~~~girvr~iG--~l~~Lp~ 143 (368)
..++|++|-+-| --..||-
T Consensus 53 ---a~~~g~~viIAgAGgAAHLPG 73 (162)
T COG0041 53 ---AEERGVKVIIAGAGGAAHLPG 73 (162)
T ss_pred ---HHHCCCeEEEecCcchhhcch
Confidence 346788887765 3345665
No 116
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=22.40 E-value=49 Score=30.56 Aligned_cols=45 Identities=29% Similarity=0.512 Sum_probs=33.0
Q ss_pred cCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 48 DGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 48 DGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
|.|+|+|+.-..-...+| .-.-.+.+++++|.++|-+.+.| ||=+
T Consensus 20 ~~~~~~~~~aa~vE~~~Y-~~~tRveEiieFak~mgykkiGi-AfCi 64 (157)
T PF08901_consen 20 DENRKIARAAAEVEGEGY-GKLTRVEEIIEFAKRMGYKKIGI-AFCI 64 (157)
T ss_pred HHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHcCCCeeee-hhhH
Confidence 468888887755444443 23577999999999999999998 3433
No 117
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=22.40 E-value=4.2e+02 Score=27.51 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=52.2
Q ss_pred hhHHHhcCCChh------h---hH-------------HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCH-HHHHHH
Q 017611 51 RRYAKKLNVEEG------A---GH-------------KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP-AEVQNL 107 (368)
Q Consensus 51 RR~A~~~gl~~~------~---GH-------------~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~-~EV~~L 107 (368)
++||+++|+... . .+ +...+.+++.+++|.++|-+.|++|. .+=++-+. ......
T Consensus 75 ~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~--~DG~~~~g~~~~~~a 152 (378)
T TIGR02635 75 ARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWL--ADGTNYPGQDDFRSR 152 (378)
T ss_pred HHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEec--CCcCcCCcccCHHHH
Confidence 578888988644 1 11 15677789999999999999999993 35454444 333334
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCcEEEE
Q 017611 108 MDLLLEKINELLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 108 m~L~~~~l~~~~~~~~~~~~~girvr~ 134 (368)
.+.+.+.|++++.. ...|+++-+
T Consensus 153 ~~rl~esL~eI~~~----~~~~v~~~i 175 (378)
T TIGR02635 153 KDRLEESLAEVYEH----LGADMRLLI 175 (378)
T ss_pred HHHHHHHHHHHHHh----CcCCCEEEE
Confidence 56677778877743 224777665
No 118
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=53 Score=30.49 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.5
Q ss_pred CEEEEEecCChhHHHhcCCChh
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEG 62 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~ 62 (368)
-||-||.|||.-|.|+.|+...
T Consensus 98 ~~I~fi~Dg~geFTk~~Gm~~d 119 (165)
T COG0678 98 GNIKFIPDGNGEFTKAMGMLVD 119 (165)
T ss_pred ccEEEecCCCchhhhhcCceee
Confidence 3999999999999999998643
No 119
>PHA00439 exonuclease
Probab=22.22 E-value=3.4e+02 Score=27.31 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHhhcC--CCCCCEEEEEecCChhHHHhcCCChhhhHHHHH---HHHHHHHHHHH-HcCCCEEEEEEeecCCCCC
Q 017611 26 MRRCLFRVLAV--GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGF---SSLISVLKYCY-ELGVKYVTIYAFSIDNFQR 99 (368)
Q Consensus 26 ~~~~l~~~l~~--~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~---~~L~~il~~c~-~~GI~~vTvYaFS~eN~kR 99 (368)
+.+.|.+.++. .--|.||++..|+.+-| |..=.+...+|+... ..+..+++... .+||+.+.+-
T Consensus 48 f~~~L~kl~~~~k~~~p~~i~vaFD~~~tf-R~elyp~YKanR~~~p~~~~~~~~i~el~~~~gi~~i~~~--------- 117 (286)
T PHA00439 48 LEDSIKSYKTRKKAWKDAPIVLAFTDSVNW-RKEVVPTYKANRKAKRKPVGYRKFLEELMAREEWKSILEP--------- 117 (286)
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCh-HhhhhhHhcCCCCCCCCchhhHHHHHHHHHhCCCCEEeeC---------
Confidence 33444444532 12489999999975545 222123333443220 11344444433 3677776433
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhhhcCCc-EEEEe-cCCCC
Q 017611 100 KPAEVQNLMDLLLEKINELLKEQSIVNLYGI-RVYFI-GNLKF 140 (368)
Q Consensus 100 ~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~gi-rvr~i-G~l~~ 140 (368)
-.|=|.++..+..... ..|. +|.++ ||.|+
T Consensus 118 -G~EADDvIgtla~~~~----------~~g~~~vvIvS~DKDl 149 (286)
T PHA00439 118 -GLEGDDVMGIIGTNPS----------LFGFKKAVLVSCDKDF 149 (286)
T ss_pred -CccHHHHHHHHHHHHH----------HCCCCeEEEEeCCCCH
Confidence 2577888766543332 3466 66665 66654
No 120
>smart00281 LamB Laminin B domain.
Probab=22.10 E-value=1.5e+02 Score=25.69 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCCCCEEEEecCCcccc-----CchhhhhcceeEEecCCCCCC-----CCHHHHHHHHHH
Q 017611 304 APDPDILMRSSGETRLS-----NFLLWQTSNCLLDSPAALWPE-----IGLWHLVWAVLK 353 (368)
Q Consensus 304 ~PdpDLLIRTSGE~RLS-----nFLLWQ~aytElyF~d~lWPd-----f~~~df~~al~~ 353 (368)
...||++|. |+-.+|+ +..+.+...=++.|....|+. .+..||..+|.+
T Consensus 40 ~~~pdViL~-G~~~~l~~~~~~~~~p~~~~~~~v~~~e~~~~~~~g~p~tr~~fm~vLan 98 (127)
T smart00281 40 VSAPDVILE-GNGLRISHPAEGPPLPDELTTVEVRFREENWQYFGGRPVTREDLMMVLAN 98 (127)
T ss_pred CCCCCEEEE-CCCeEEEEeecCCCCCCcceEEEEEEEecccCcCCCCCcCHHHHHHHHhC
Confidence 357999997 5546776 334444322278888888888 568888888764
No 121
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.65 E-value=2.6e+02 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSID 95 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~e 95 (368)
+..+.+.+.++++.++|+..+++|.++++
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 45678888999999999999999998875
No 122
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=21.51 E-value=1.6e+02 Score=29.57 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
..+.+.+.++++.++|++.+++|.+++
T Consensus 163 t~~~~~~~l~~~~~l~~~~is~y~L~~ 189 (350)
T PRK08446 163 NKKLLKEELKLAKELPINHLSAYSLTI 189 (350)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecccee
Confidence 356667777777778888888887776
No 123
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=21.47 E-value=57 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=19.8
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|+||. -.|+.+|.++++++.+
T Consensus 82 ~~VaYiP~~~---------------viGLSKl~RiV~~~ar 107 (179)
T PF01227_consen 82 AHVAYIPGGR---------------VIGLSKLARIVDFFAR 107 (179)
T ss_dssp EEEEEE-SSE---------------EE-HHHHHHHHHHHHS
T ss_pred EEEEEEeCCc---------------ccChhHHHHHHHHHhc
Confidence 5999999664 4899999999998654
No 124
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=21.38 E-value=2.2e+02 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
...+.+.+.++++.++|+.++++|.++
T Consensus 215 qt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 215 QTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 455778889999999999999999987
No 125
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.23 E-value=6e+02 Score=25.83 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.+.+-+.++.++|.+.||..+|-= |+. +.|+ ++.++|+.+.=||-.+.-.-+++
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stp-fd~-------~svd------------------~l~~~~v~~~KIaS~~~~n~pLL 126 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTP-FDL-------ESAD------------------FLEDLGVPRFKIPSGEITNAPLL 126 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEe-CCH-------HHHH------------------HHHhcCCCEEEECcccccCHHHH
Confidence 455677888999999999987632 222 2222 23345667667787777777777
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
+.+.+ ++.-+.|.-+.+.-+||..|+..+.+
T Consensus 127 ~~~A~--------~gkPvilStGmatl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 127 KKIAR--------FGKPVILSTGMATLEEIEAAVGVLRD 157 (329)
T ss_pred HHHHh--------cCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 77642 23456666666788899888887754
No 126
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=21.22 E-value=5.3e+02 Score=26.44 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeec----CCCCC-CHHHHHHHHHHHHHHHH-----H--HhhhhhhhhcCCcEEEE
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSI----DNFQR-KPAEVQNLMDLLLEKIN-----E--LLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~----eN~kR-~~~EV~~Lm~L~~~~l~-----~--~~~~~~~~~~~girvr~ 134 (368)
+..+.+.++.+.+.+.||+++=-.+|-. .-|.= +.+....|.+...+ +. + -..+.+++.+. +.+--
T Consensus 129 E~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~-~Gl~~~t~v~d~~~~~~l~~~-vd~lk 206 (360)
T PRK12595 129 ESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE-YGLAVISEIVNPADVEVALDY-VDVIQ 206 (360)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH-cCCCEEEeeCCHHHHHHHHHh-CCeEE
Confidence 3456667777777777777666555531 00111 11223322222111 10 0 00112234455 77777
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC-CCHHHHHHHHHHHHhc
Q 017611 135 IGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAY-TSADEIVHAVQESFKN 186 (368)
Q Consensus 135 iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~Y-ggrdEI~~Avr~l~~~ 186 (368)
||-.+.-.-+++.++. .++..++|.=+. .+=+||..|+..+...
T Consensus 207 I~s~~~~n~~LL~~~a--------~~gkPVilk~G~~~t~~e~~~Ave~i~~~ 251 (360)
T PRK12595 207 IGARNMQNFELLKAAG--------RVNKPVLLKRGLSATIEEFIYAAEYIMSQ 251 (360)
T ss_pred ECcccccCHHHHHHHH--------ccCCcEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 8877777777777664 246688999897 7999999999988754
No 127
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=21.17 E-value=5.2e+02 Score=21.95 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCC
Q 017611 18 LLESLGSFMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97 (368)
Q Consensus 18 ~~~~~~~~~~~~l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~ 97 (368)
+-+.+...++..+...-..| ++.|+|+|.-|++- ...--+....+.|.++||.+.. |.|+-
T Consensus 8 va~~i~~~l~~~i~~l~~~~-~~P~Laii~vg~d~--------------~S~~Y~~~k~k~~~~~Gi~~~~-~~l~~--- 68 (117)
T PF00763_consen 8 VAKEIKEELKEEIEKLKEKG-ITPKLAIILVGDDP--------------ASISYVRSKQKAAEKLGIEFEL-IELPE--- 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----EEEEEEES--H--------------HHHHHHHHHHHHHHHHT-EEEE-EEE-T---
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCcEEEEEecCCCh--------------hHHHHHHHHHHHHHHcCCceEE-EECCC---
Confidence 34455556666665544444 56699999999852 1123356677899999998655 45532
Q ss_pred CCCHHHHHHHH
Q 017611 98 QRKPAEVQNLM 108 (368)
Q Consensus 98 kR~~~EV~~Lm 108 (368)
.-+.+|+-..+
T Consensus 69 ~~~~~el~~~i 79 (117)
T PF00763_consen 69 DISEEELLELI 79 (117)
T ss_dssp TSSHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 23455554443
No 128
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=21.03 E-value=1e+02 Score=31.37 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEE
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYA 91 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYa 91 (368)
|..|++|..++++.|.++|++.||+-.
T Consensus 133 ~p~g~rKa~R~m~lA~~f~iPvVtlvD 159 (316)
T TIGR00513 133 APEGYRKALRLMKMAERFKMPIITFID 159 (316)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 458889999999999999999999975
No 129
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=20.95 E-value=4.6e+02 Score=26.11 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLL 111 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~ 111 (368)
.+...+-++.+.+.||....-..+-. ..+.+.+++..|++.+
T Consensus 213 ~~~~~~ai~~L~~~Gi~v~~q~vLl~-gvNd~~~~l~~l~~~l 254 (321)
T TIGR03822 213 TAEARAACARLIDAGIPMVSQSVLLR-GVNDDPETLAALMRAF 254 (321)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeeEeC-CCCCCHHHHHHHHHHH
Confidence 46778888999999997766554433 2356677777776544
No 130
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.77 E-value=1e+03 Score=25.33 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=56.4
Q ss_pred HHHHHHcCCCEEEEEEeec------CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-CCCCCCHHHH-H
Q 017611 76 LKYCYELGVKYVTIYAFSI------DNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-NLKFLSEPVR-V 147 (368)
Q Consensus 76 l~~c~~~GI~~vTvYaFS~------eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~l~~Lp~~v~-~ 147 (368)
++.+.+.|++.|.+|. ++ .|++++++|+-.. +.+.+. ...+.|.+|.+.. |-.+-+++.. +
T Consensus 79 i~~a~~~g~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~---~~~~v~-------~ak~~g~~v~~~~ed~~r~~~~~l~~ 147 (488)
T PRK09389 79 IDAALECDVDSVHLVV-PTSDLHIEYKLKKTREEVLET---AVEAVE-------YAKDHGLIVELSGEDASRADLDFLKE 147 (488)
T ss_pred HHHHHhCCcCEEEEEE-ccCHHHHHHHhCCCHHHHHHH---HHHHHH-------HHHHCCCEEEEEEeeCCCCCHHHHHH
Confidence 5678889999999995 33 4778888876433 333332 2345677777743 4555555554 5
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHH
Q 017611 148 AAEEVMMATARNSKVVLLVCLAYTS--ADEIVHAVQESF 184 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Ygg--rdEI~~Avr~l~ 184 (368)
.++.+.+..+. .++||=..|. =+++.+-++.+.
T Consensus 148 ~~~~~~~~Ga~----~i~l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 148 LYKAGIEAGAD----RICFCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred HHHHHHhCCCC----EEEEecCCCCcCHHHHHHHHHHHH
Confidence 55555554332 4777755554 455555555543
No 131
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=20.70 E-value=1.1e+02 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEE
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYA 91 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYa 91 (368)
+..|++|..++++.|.++|++.||+..
T Consensus 80 ~~~g~rKa~R~~~lA~~~~lPvV~lvD 106 (256)
T PRK12319 80 HPEGYRKALRLMKQAEKFGRPVVTFIN 106 (256)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 456899999999999999999999976
No 132
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.60 E-value=8.2e+02 Score=25.17 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEE-eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CcEEEE--ecCC--
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYA-FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLY--GIRVYF--IGNL-- 138 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYa-FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~--girvr~--iG~l-- 138 (368)
+..++.+++.+++|.++|.+.|+++. +....... .......++.+.+.|.+++.. ..+. ||+|-+ +.+.
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~-~~d~~~a~~~~~e~L~~lae~---A~~~G~GV~laLEp~p~~~~ 186 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDG-AKDVRAALDRMREALNLLAAY---AEDQGYGLRFALEPKPNEPR 186 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCcc-ccCHHHHHHHHHHHHHHHHHH---HHhhCCCcEEEEccCCCCCC
Confidence 57788999999999999999999976 11111100 112334566666777776643 3343 576655 2221
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCC-ceEEEEEecCCCHHHHHHHHHHHH
Q 017611 139 -KFLSEPVRVAAEEVMMATARNS-KVVLLVCLAYTSADEIVHAVQESF 184 (368)
Q Consensus 139 -~~Lp~~v~~~i~~~e~~T~~n~-~~~LnI~~~YggrdEI~~Avr~l~ 184 (368)
..+-+.+..++.-++..-..|. ++.+-++=..-....+.++++..+
T Consensus 187 ~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~~~g~n~~~~i~~~l 234 (382)
T TIGR02631 187 GDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTHGIAQAL 234 (382)
T ss_pred cceecCCHHHHHHHHHHcCCccceeEEEechhHhhcCCCHHHHHHHHH
Confidence 1233333333333332222231 344444332222246777777554
No 133
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=20.49 E-value=87 Score=29.85 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.2
Q ss_pred CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHH
Q 017611 41 HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYE 81 (368)
Q Consensus 41 ~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~ 81 (368)
-|||+|++| +-.|+.+|.+|++++.+
T Consensus 102 ~hVaYiP~~---------------~VvGLSKl~RiV~~~ar 127 (201)
T PRK12606 102 AHVAYLPGG---------------KVLGLSKIARIVDMFAR 127 (201)
T ss_pred EEEEEeCCC---------------ccccHHHHHHHHHHHhc
Confidence 599999964 35899999999998543
No 134
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.39 E-value=7.3e+02 Score=24.68 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCC-------------CHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEE
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR-------------KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVY 133 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR-------------~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr 133 (368)
.-.+..++.+++|.++|++++.| -+-|.. +...+..|.+- -+++||.|-
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Y--------------a~~KgVgi~ 90 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDY--------------AKEKGVGIW 90 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHH--------------HHHTT-EEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHH--------------HHHcCCCEE
Confidence 34677889999999999999998 345642 23333333322 346788888
Q ss_pred EecCCCC------CCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhh
Q 017611 134 FIGNLKF------LSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVN 195 (368)
Q Consensus 134 ~iG~l~~------Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~ 195 (368)
+..+-.- +...+.+++.... .-+=.-+-|-|=-+..+++++-.++++++..+--+.++
T Consensus 91 lw~~~~~~~~~~~~~~~~~~~f~~~~----~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~Lmvn 154 (273)
T PF10566_consen 91 LWYHSETGGNVANLEKQLDEAFKLYA----KWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVN 154 (273)
T ss_dssp EEEECCHTTBHHHHHCCHHHHHHHHH----HCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEeCCcchhhHhHHHHHHHHHHHHH----HcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEE
Confidence 8876544 3333333333333 23333456666666778888888888777544444444
No 135
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.13 E-value=1.9e+02 Score=21.45 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCC
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDN 96 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN 96 (368)
.|.++++...+.||...++|+|..++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 47889999999999999999987654
No 136
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.08 E-value=6.7e+02 Score=23.11 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=13.2
Q ss_pred CCCEEEEEecCChhHHHh
Q 017611 39 IPHHFAFIMDGNRRYAKK 56 (368)
Q Consensus 39 iP~HIAiIMDGNRR~A~~ 56 (368)
-++.||+..||.-=+++.
T Consensus 21 ~~~riAvfID~~Nv~~~~ 38 (160)
T TIGR00288 21 GEKKIGLLVDGPNMLRKE 38 (160)
T ss_pred CCCcEEEEEeCCccChhh
Confidence 467899999997555443
No 137
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.04 E-value=7.2e+02 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCCEEEEE
Q 017611 71 SLISVLKYCYELGVKYVTIY 90 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvY 90 (368)
.+.+.++.+.++|++.|-++
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~ 33 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIW 33 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 58999999999999999986
Done!