Query 017611
Match_columns 368
No_of_seqs 182 out of 1086
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h8e_A Undecaprenyl pyrophosph 100.0 1.9E-92 6.5E-97 671.4 24.1 238 33-366 18-255 (256)
2 3sgv_B Undecaprenyl pyrophosph 100.0 4.1E-92 1.4E-96 668.1 22.3 235 37-367 15-249 (253)
3 3ugs_B Undecaprenyl pyrophosph 100.0 3.6E-90 1.2E-94 645.4 24.8 222 37-363 4-225 (225)
4 2d2r_A Undecaprenyl pyrophosph 100.0 5.8E-88 2E-92 637.8 24.3 232 37-365 13-244 (245)
5 1f75_A Undecaprenyl pyrophosph 100.0 3.6E-88 1.2E-92 640.5 20.5 235 33-363 14-248 (249)
6 3qas_B Undecaprenyl pyrophosph 100.0 1.2E-87 4.1E-92 638.1 22.4 239 32-366 6-248 (253)
7 2vg3_A Undecaprenyl pyrophosph 100.0 4.3E-87 1.5E-91 643.0 24.0 238 30-363 46-283 (284)
8 2vg0_A Short-chain Z-isoprenyl 100.0 8.5E-85 2.9E-89 609.9 22.6 222 38-357 1-227 (227)
9 2j6v_A UV endonuclease, UVDE; 74.7 13 0.00045 35.1 9.2 108 67-185 58-184 (301)
10 3cny_A Inositol catabolism pro 73.2 6 0.00021 35.4 6.2 68 65-135 85-160 (301)
11 3dx5_A Uncharacterized protein 71.9 9.9 0.00034 33.9 7.3 64 65-135 79-142 (286)
12 1i60_A IOLI protein; beta barr 70.8 24 0.00083 30.8 9.5 64 65-135 79-142 (278)
13 2zds_A Putative DNA-binding pr 69.4 13 0.00044 33.9 7.7 66 67-135 108-179 (340)
14 3bdk_A D-mannonate dehydratase 69.1 14 0.00048 36.5 8.3 116 64-184 98-277 (386)
15 3u0h_A Xylose isomerase domain 69.0 18 0.0006 31.9 8.2 63 65-135 79-141 (281)
16 3qc0_A Sugar isomerase; TIM ba 68.6 12 0.0004 32.9 7.0 67 63-135 76-142 (275)
17 1k77_A EC1530, hypothetical pr 68.6 9.5 0.00033 33.4 6.3 63 65-134 80-142 (260)
18 3ngf_A AP endonuclease, family 67.4 21 0.00073 31.7 8.5 63 65-135 88-150 (269)
19 1tz9_A Mannonate dehydratase; 66.0 12 0.00041 35.6 6.9 36 64-100 89-125 (367)
20 2ftp_A Hydroxymethylglutaryl-C 65.4 52 0.0018 30.8 11.1 99 74-186 87-200 (302)
21 2hk0_A D-psicose 3-epimerase; 64.9 13 0.00044 33.9 6.7 69 64-135 101-170 (309)
22 1ydo_A HMG-COA lyase; TIM-barr 64.5 69 0.0024 30.3 11.9 97 76-186 87-198 (307)
23 3l23_A Sugar phosphate isomera 64.0 11 0.00036 34.8 5.9 59 66-134 104-164 (303)
24 3obe_A Sugar phosphate isomera 61.3 21 0.00073 32.8 7.5 59 66-134 110-168 (305)
25 1qtw_A Endonuclease IV; DNA re 60.3 42 0.0014 29.5 9.0 63 64-135 83-145 (285)
26 2qul_A D-tagatose 3-epimerase; 58.9 19 0.00065 31.9 6.5 69 64-135 82-152 (290)
27 3tc3_A UV damage endonuclease; 58.4 77 0.0026 30.7 11.0 114 66-185 56-182 (310)
28 3vni_A Xylose isomerase domain 57.6 17 0.00057 32.5 5.9 68 64-135 82-151 (294)
29 3ayv_A Putative uncharacterize 56.1 48 0.0016 28.9 8.6 68 63-135 69-136 (254)
30 2x7v_A Probable endonuclease 4 55.9 59 0.002 28.6 9.2 61 65-135 84-144 (287)
31 3gqe_A Non-structural protein 54.9 52 0.0018 28.8 8.5 73 71-157 90-162 (168)
32 3qxb_A Putative xylose isomera 54.0 24 0.00083 32.2 6.5 68 63-134 107-177 (316)
33 2q02_A Putative cytoplasmic pr 51.7 16 0.00053 32.2 4.6 74 51-135 57-139 (272)
34 3tva_A Xylose isomerase domain 51.7 52 0.0018 29.2 8.2 64 63-136 95-159 (290)
35 3h7i_A Ribonuclease H, RNAse H 49.9 99 0.0034 29.9 10.2 82 39-141 62-159 (305)
36 1r4g_A RNA polymerase alpha su 46.6 15 0.0005 26.9 2.9 20 99-118 32-51 (53)
37 1ydn_A Hydroxymethylglutaryl-C 45.4 1.8E+02 0.0063 26.7 11.7 98 75-186 84-196 (295)
38 1exn_A 5'-exonuclease, 5'-nucl 44.6 28 0.00094 33.3 5.4 64 40-113 59-137 (290)
39 3kws_A Putative sugar isomeras 44.2 82 0.0028 27.9 8.3 64 64-135 98-165 (287)
40 2q02_A Putative cytoplasmic pr 44.1 1.3E+02 0.0045 26.0 9.5 102 71-186 20-128 (272)
41 3aam_A Endonuclease IV, endoiv 43.9 1.6E+02 0.0056 25.7 10.5 101 71-186 15-127 (270)
42 3ivs_A Homocitrate synthase, m 43.2 1.3E+02 0.0045 30.1 10.3 96 76-185 116-220 (423)
43 1olt_A Oxygen-independent copr 43.0 41 0.0014 33.2 6.6 31 67-97 217-247 (457)
44 2cw6_A Hydroxymethylglutaryl-C 42.4 2E+02 0.0067 26.7 10.9 97 76-186 86-197 (298)
45 3cqj_A L-ribulose-5-phosphate 42.2 40 0.0014 30.2 5.9 63 65-135 103-166 (295)
46 2eja_A URO-D, UPD, uroporphyri 42.0 92 0.0031 29.1 8.6 55 132-186 273-334 (338)
47 3sig_A PArg, poly(ADP-ribose) 39.1 32 0.0011 32.7 4.9 41 69-109 197-237 (277)
48 1bxb_A Xylose isomerase; xylos 38.1 24 0.00081 33.9 3.9 27 65-91 111-137 (387)
49 3pzj_A Probable acetyltransfer 37.9 55 0.0019 27.2 5.7 36 60-96 129-164 (209)
50 3aam_A Endonuclease IV, endoiv 37.6 90 0.0031 27.4 7.4 56 65-135 83-139 (270)
51 2qw5_A Xylose isomerase-like T 37.6 81 0.0028 28.9 7.3 66 64-134 103-182 (335)
52 3q71_A Poly [ADP-ribose] polym 36.4 2.3E+02 0.0079 25.7 10.1 39 71-109 136-174 (221)
53 1xla_A D-xylose isomerase; iso 36.3 45 0.0015 32.0 5.5 67 64-134 110-179 (394)
54 3ble_A Citramalate synthase fr 35.5 47 0.0016 31.8 5.5 97 76-186 102-210 (337)
55 2wkj_A N-acetylneuraminate lya 35.0 2.2E+02 0.0075 26.6 10.0 105 68-187 30-136 (303)
56 1xim_A D-xylose isomerase; iso 33.9 50 0.0017 31.7 5.4 65 65-135 111-180 (393)
57 2yxg_A DHDPS, dihydrodipicolin 32.9 2.5E+02 0.0086 25.9 10.0 104 69-187 20-125 (289)
58 1f6k_A N-acetylneuraminate lya 32.8 2.6E+02 0.0091 25.8 10.1 105 68-187 22-129 (293)
59 2ehh_A DHDPS, dihydrodipicolin 32.7 2.8E+02 0.0095 25.7 10.2 104 69-187 20-125 (294)
60 2eee_A Uncharacterized protein 32.3 98 0.0034 26.0 6.4 40 70-109 95-134 (149)
61 2ojp_A DHDPS, dihydrodipicolin 32.3 2.3E+02 0.0077 26.3 9.5 105 68-187 20-126 (292)
62 3cpr_A Dihydrodipicolinate syn 32.1 3.2E+02 0.011 25.5 11.3 106 67-187 34-141 (304)
63 3aal_A Probable endonuclease 4 31.1 1.2E+02 0.0043 27.2 7.4 62 64-135 88-149 (303)
64 2jyc_A Uncharacterized protein 31.0 1.5E+02 0.005 25.4 7.4 40 70-109 106-145 (160)
65 1xky_A Dihydrodipicolinate syn 30.5 2.9E+02 0.0098 25.7 10.0 105 68-187 31-137 (301)
66 2ge3_A Probable acetyltransfer 30.1 39 0.0013 26.8 3.3 36 60-96 95-130 (170)
67 1o5k_A DHDPS, dihydrodipicolin 30.0 2.4E+02 0.0084 26.3 9.4 105 68-187 31-137 (306)
68 3l21_A DHDPS, dihydrodipicolin 29.8 3.5E+02 0.012 25.3 11.4 106 67-187 33-140 (304)
69 3dz1_A Dihydrodipicolinate syn 29.5 2.3E+02 0.008 26.5 9.2 104 68-187 27-131 (313)
70 2r1i_A GCN5-related N-acetyltr 29.4 81 0.0028 24.4 5.1 34 60-93 107-140 (172)
71 1muw_A Xylose isomerase; atomi 29.3 72 0.0025 30.4 5.7 65 64-134 110-179 (386)
72 3s5o_A 4-hydroxy-2-oxoglutarat 28.9 1.9E+02 0.0064 27.1 8.4 105 68-187 33-141 (307)
73 3flu_A DHDPS, dihydrodipicolin 28.3 3.4E+02 0.011 25.2 10.0 105 68-187 26-132 (297)
74 2ztj_A Homocitrate synthase; ( 27.8 4.2E+02 0.014 25.6 12.3 93 76-184 80-183 (382)
75 1y10_A Hypothetical protein RV 27.8 1.4E+02 0.0046 29.7 7.4 83 83-171 212-304 (407)
76 3can_A Pyruvate-formate lyase- 27.5 68 0.0023 26.8 4.6 26 68-93 108-135 (182)
77 2v9d_A YAGE; dihydrodipicolini 27.3 3.2E+02 0.011 26.1 9.9 106 67-187 49-156 (343)
78 1muw_A Xylose isomerase; atomi 26.4 2.2E+02 0.0076 26.9 8.5 31 72-102 35-65 (386)
79 2vc6_A MOSA, dihydrodipicolina 26.3 2.3E+02 0.0079 26.2 8.4 104 69-187 20-125 (292)
80 3d0c_A Dihydrodipicolinate syn 26.2 1.2E+02 0.004 28.7 6.5 104 67-187 30-136 (314)
81 2d73_A Alpha-glucosidase SUSB; 26.2 1.4E+02 0.0049 32.2 7.7 99 53-166 379-506 (738)
82 3g8w_A Lactococcal prophage PS 25.7 90 0.0031 24.2 4.8 31 63-93 94-124 (169)
83 2j8m_A Acetyltransferase PA486 25.6 53 0.0018 26.1 3.4 34 60-93 92-125 (172)
84 2r8w_A AGR_C_1641P; APC7498, d 25.4 3.2E+02 0.011 25.9 9.4 106 67-187 52-159 (332)
85 2fe7_A Probable N-acetyltransf 25.0 81 0.0028 24.1 4.3 34 60-93 98-131 (166)
86 3qze_A DHDPS, dihydrodipicolin 24.5 4.1E+02 0.014 24.9 9.9 105 68-187 42-148 (314)
87 2ae6_A Acetyltransferase, GNAT 24.5 56 0.0019 26.0 3.3 35 60-94 91-125 (166)
88 3e96_A Dihydrodipicolinate syn 24.5 96 0.0033 29.3 5.5 102 68-187 31-136 (316)
89 3fix_A N-acetyltransferase; te 24.3 85 0.0029 25.0 4.5 34 60-93 120-153 (183)
90 3kh6_A Poly [ADP-ribose] polym 23.7 1.6E+02 0.0053 26.4 6.5 41 70-110 115-155 (199)
91 4abl_A Poly [ADP-ribose] polym 23.3 1.7E+02 0.0057 25.8 6.5 41 70-110 104-144 (183)
92 3a5f_A Dihydrodipicolinate syn 23.1 2.5E+02 0.0086 25.9 8.0 106 67-187 19-126 (291)
93 2eui_A Probable acetyltransfer 23.0 79 0.0027 23.6 3.8 34 60-93 88-121 (153)
94 2rfg_A Dihydrodipicolinate syn 23.0 2.3E+02 0.008 26.3 7.8 104 69-187 20-125 (297)
95 3u0h_A Xylose isomerase domain 22.9 3.1E+02 0.011 23.7 8.2 56 70-134 47-102 (281)
96 4e0a_A BH1408 protein; structu 22.8 64 0.0022 24.6 3.3 33 61-93 99-131 (164)
97 3eo4_A Uncharacterized protein 22.6 68 0.0023 25.0 3.5 33 61-93 101-133 (164)
98 3qfe_A Putative dihydrodipicol 22.3 2.9E+02 0.0098 26.0 8.4 106 67-187 29-138 (318)
99 3daq_A DHDPS, dihydrodipicolin 22.2 4.3E+02 0.015 24.3 9.5 105 68-187 21-127 (292)
100 3d8p_A Acetyltransferase of GN 21.9 78 0.0027 24.1 3.6 33 61-93 89-121 (163)
101 1mk4_A Hypothetical protein YQ 21.9 94 0.0032 23.7 4.1 34 60-93 78-111 (157)
102 3gpg_A NSP3, non-structural pr 21.7 1.8E+02 0.0061 25.4 6.3 37 71-107 96-132 (168)
103 3tak_A DHDPS, dihydrodipicolin 21.7 4.1E+02 0.014 24.4 9.2 104 69-187 21-126 (291)
104 3si9_A DHDPS, dihydrodipicolin 21.6 4.6E+02 0.016 24.6 9.7 106 67-187 40-147 (315)
105 2bei_A Diamine acetyltransfera 21.5 66 0.0023 25.9 3.3 35 60-94 98-132 (170)
106 3m5v_A DHDPS, dihydrodipicolin 21.5 4.9E+02 0.017 24.1 10.5 106 68-187 26-133 (301)
107 3na8_A Putative dihydrodipicol 21.4 3.1E+02 0.011 25.8 8.4 106 67-187 42-149 (315)
108 1i60_A IOLI protein; beta barr 21.4 3.9E+02 0.013 22.9 10.0 44 71-116 47-91 (278)
109 4exq_A UPD, URO-D, uroporphyri 21.1 4.7E+02 0.016 25.0 9.7 132 4-187 217-358 (368)
110 1rxw_A Flap structure-specific 20.6 84 0.0029 29.8 4.2 18 72-89 131-148 (336)
111 2i6c_A Putative acetyltransfer 20.4 93 0.0032 23.6 3.8 34 60-93 85-119 (160)
112 2oh1_A Acetyltransferase, GNAT 20.3 81 0.0028 24.6 3.5 34 60-93 113-146 (179)
113 2dx6_A Hypothetical protein TT 20.0 1.3E+02 0.0045 25.4 4.9 41 70-110 91-131 (159)
No 1
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.9e-92 Score=671.41 Aligned_cols=238 Identities=31% Similarity=0.510 Sum_probs=224.1
Q ss_pred hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL 112 (368)
Q Consensus 33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~ 112 (368)
.+..+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||||||+||++||++||+|+.
T Consensus 18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 97 (256)
T 4h8e_A 18 ELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPV 97 (256)
T ss_dssp -CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHH
Confidence 47779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611 113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL 192 (368)
Q Consensus 113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~ 192 (368)
.+|.+.++ .++++|||||+|||++.||+++++.+.++++.|++|++++||||++||||+||++|++++++++.
T Consensus 98 ~~l~~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~---- 170 (256)
T 4h8e_A 98 NFLKTFLP---ELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELH---- 170 (256)
T ss_dssp HHHHHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHH---HHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH----
Confidence 99998764 47899999999999999999999999999999999999999999999999999999999988742
Q ss_pred hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611 193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI 272 (368)
Q Consensus 193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 272 (368)
+|.+
T Consensus 171 --------~g~l-------------------------------------------------------------------- 174 (256)
T 4h8e_A 171 --------QQGL-------------------------------------------------------------------- 174 (256)
T ss_dssp --------HTTC--------------------------------------------------------------------
T ss_pred --------cCCC--------------------------------------------------------------------
Confidence 2332
Q ss_pred CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
+|++|+++.|++||||++.||||||||||||+|||||||||++||||||+|++||||+.+||++||.
T Consensus 175 -------------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~ 241 (256)
T 4h8e_A 175 -------------NSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIK 241 (256)
T ss_dssp -------------CGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHH
T ss_pred -------------ChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhc
Q 017611 353 KFQRNHSFLEKKKK 366 (368)
Q Consensus 353 ~yq~r~rRfGK~~~ 366 (368)
+||+|+||||+.++
T Consensus 242 ~yq~R~RRfG~~~~ 255 (256)
T 4h8e_A 242 IYQSRQRRFGGLSE 255 (256)
T ss_dssp HHHHCCCCTTCC--
T ss_pred HHHhhhhccCCCCC
Confidence 99999999998764
No 2
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=4.1e-92 Score=668.14 Aligned_cols=235 Identities=27% Similarity=0.407 Sum_probs=204.2
Q ss_pred CCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 017611 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 37 ~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~ 116 (368)
+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||||||+||++||++||+|+..+|.
T Consensus 15 ~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 94 (253)
T 3sgv_B 15 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD 94 (253)
T ss_dssp TTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTHH
T ss_pred CCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhc
Q 017611 117 ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196 (368)
Q Consensus 117 ~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~ 196 (368)
+.++ .++++|||||+|||++.||+++++++.++|+.|++|++++||||++||||+||++|+|++++++.
T Consensus 95 ~~~~---~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~-------- 163 (253)
T 3sgv_B 95 SEVK---SLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQ-------- 163 (253)
T ss_dssp HHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHH---HHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHH--------
Confidence 7553 48899999999999999999999999999999999999999999999999999999999988742
Q ss_pred cccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCC
Q 017611 197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276 (368)
Q Consensus 197 ~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 276 (368)
.|.+
T Consensus 164 ----~g~l------------------------------------------------------------------------ 167 (253)
T 3sgv_B 164 ----QGNL------------------------------------------------------------------------ 167 (253)
T ss_dssp ----HTSS------------------------------------------------------------------------
T ss_pred ----cCCC------------------------------------------------------------------------
Confidence 2332
Q ss_pred CCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 017611 277 TEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356 (368)
Q Consensus 277 i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~ 356 (368)
+|++|+++.|++||||++.||||||||||||+|||||||||++||||||+|++||||+.+||++||.+||+
T Consensus 168 ---------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai~~yq~ 238 (253)
T 3sgv_B 168 ---------QPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFAN 238 (253)
T ss_dssp ---------CGGGCCHHHHHTTSTTTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHH
T ss_pred ---------ChhhCCHHHHHHhhcccCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcc
Q 017611 357 NHSFLEKKKKQ 367 (368)
Q Consensus 357 r~rRfGK~~~~ 367 (368)
|+||||+...|
T Consensus 239 R~RRfG~~~~~ 249 (253)
T 3sgv_B 239 RERRFGGTEPG 249 (253)
T ss_dssp HC---------
T ss_pred hhccCCCCccc
Confidence 99999987544
No 3
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=3.6e-90 Score=645.40 Aligned_cols=222 Identities=25% Similarity=0.429 Sum_probs=197.9
Q ss_pred CCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 017611 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 37 ~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~ 116 (368)
..+|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++||+||||||||+||++||++||+|+.++|.
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhc
Q 017611 117 ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196 (368)
Q Consensus 117 ~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~ 196 (368)
+.++ .++++|||||+|||++.||+++++++.++|+.|++|++++||||++||||+||++|+++++++
T Consensus 84 ~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~~---------- 150 (225)
T 3ugs_B 84 EALE---KFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEK---------- 150 (225)
T ss_dssp HHHH---HSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHT----------
T ss_pred HHHH---HHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHHh----------
Confidence 8553 488999999999999999999999999999999999999999999999999999999998542
Q ss_pred cccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCC
Q 017611 197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276 (368)
Q Consensus 197 ~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 276 (368)
|
T Consensus 151 -----g-------------------------------------------------------------------------- 151 (225)
T 3ugs_B 151 -----K-------------------------------------------------------------------------- 151 (225)
T ss_dssp -----T--------------------------------------------------------------------------
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 017611 277 TEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356 (368)
Q Consensus 277 i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~ 356 (368)
++|+++.|++||||+ ||||||||||||+|||||||||++||||||+|++||||+.+||++||.+||+
T Consensus 152 -----------~~I~e~~i~~~L~t~--PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~~y~~ 218 (225)
T 3ugs_B 152 -----------LELNEENLTQNLDLP--LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRN 218 (225)
T ss_dssp -----------CCCSHHHHHHTSSSC--SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHHHHHH
T ss_pred -----------CcCCHHHHHHhcCCC--CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHHHHHh
Confidence 346788899999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhh
Q 017611 357 NHSFLEK 363 (368)
Q Consensus 357 r~rRfGK 363 (368)
|+||||+
T Consensus 219 R~RRfG~ 225 (225)
T 3ugs_B 219 RERTFGK 225 (225)
T ss_dssp SCCCTTC
T ss_pred hhccCCC
Confidence 9999995
No 4
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=5.8e-88 Score=637.79 Aligned_cols=232 Identities=28% Similarity=0.412 Sum_probs=205.0
Q ss_pred CCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 017611 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 37 ~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~ 116 (368)
+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+..++.
T Consensus 13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhc
Q 017611 117 ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196 (368)
Q Consensus 117 ~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~ 196 (368)
+.+++ ++++|||||+||+++.||+++++.+.++++.|++|++++||||++||||+||++|+|++++++.
T Consensus 93 ~~~~~---l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~-------- 161 (245)
T 2d2r_A 93 DERST---YLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPP-------- 161 (245)
T ss_dssp HHHHH---HHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHH---HHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH--------
Confidence 87653 7889999999999999999999999999999999999999999999999999999999998742
Q ss_pred cccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCC
Q 017611 197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276 (368)
Q Consensus 197 ~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 276 (368)
+ .+
T Consensus 162 ----~-~l------------------------------------------------------------------------ 164 (245)
T 2d2r_A 162 ----S-NI------------------------------------------------------------------------ 164 (245)
T ss_dssp ----T-TG------------------------------------------------------------------------
T ss_pred ----h-cC------------------------------------------------------------------------
Confidence 1 11
Q ss_pred CCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHHHHHH
Q 017611 277 TEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356 (368)
Q Consensus 277 i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~~yq~ 356 (368)
+|++|+++.|++|||++++||||||||||||+|||||||||++||||||++++||||+++||++||.+||+
T Consensus 165 ---------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~ 235 (245)
T 2d2r_A 165 ---------SLLESLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYK 235 (245)
T ss_dssp ---------GGCSCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHH
T ss_pred ---------ChhhCCHHHHHHHhccCCCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhh
Q 017611 357 NHSFLEKKK 365 (368)
Q Consensus 357 r~rRfGK~~ 365 (368)
|+||||+.+
T Consensus 236 R~RRfG~~~ 244 (245)
T 2d2r_A 236 RVRKFGELK 244 (245)
T ss_dssp HCC------
T ss_pred cCccCCCCC
Confidence 999999753
No 5
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=3.6e-88 Score=640.49 Aligned_cols=235 Identities=34% Similarity=0.522 Sum_probs=204.9
Q ss_pred hhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHH
Q 017611 33 VLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLL 112 (368)
Q Consensus 33 ~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~ 112 (368)
++..+++|+|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||||||+||++||++||+|+.
T Consensus 14 ~~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~ 93 (249)
T 1f75_A 14 NINAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPG 93 (249)
T ss_dssp CCCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHH
T ss_pred ccccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHH
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhh
Q 017611 113 EKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESL 192 (368)
Q Consensus 113 ~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~ 192 (368)
.++.+.+.+ ++++|||||++|+++.||+++++.+.++++.|++|++++||||++||||+||++|+|++++++.
T Consensus 94 ~~l~~~~~~---l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~---- 166 (249)
T 1f75_A 94 DFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYK---- 166 (249)
T ss_dssp HHHHHHHHH---HHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHH---HHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH----
Confidence 999987654 7789999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhccc
Q 017611 193 AVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRI 272 (368)
Q Consensus 193 ~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 272 (368)
+|.+
T Consensus 167 --------~g~l-------------------------------------------------------------------- 170 (249)
T 1f75_A 167 --------SGEI-------------------------------------------------------------------- 170 (249)
T ss_dssp --------TTSS--------------------------------------------------------------------
T ss_pred --------cCCC--------------------------------------------------------------------
Confidence 2332
Q ss_pred CCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 273 GNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 273 ~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
+|++|+++.|++|||++++||||||||||||+|||||||||++||||||++++||||+.+||++||.
T Consensus 171 -------------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~ 237 (249)
T 1f75_A 171 -------------SLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCIS 237 (249)
T ss_dssp -------------CGGGCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHH
T ss_pred -------------ChHhCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhhceEEEECCCCCCcCCHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q 017611 353 KFQRNHSFLEK 363 (368)
Q Consensus 353 ~yq~r~rRfGK 363 (368)
+||+|+||||+
T Consensus 238 ~y~~r~RRfG~ 248 (249)
T 1f75_A 238 IYQNRHRRFGG 248 (249)
T ss_dssp HHTTC------
T ss_pred HHhcCccCCCC
Confidence 99999999996
No 6
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=1.2e-87 Score=638.13 Aligned_cols=239 Identities=27% Similarity=0.420 Sum_probs=196.9
Q ss_pred HhhcCCCCC----CEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHH
Q 017611 32 RVLAVGPIP----HHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNL 107 (368)
Q Consensus 32 ~~l~~~~iP----~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~L 107 (368)
..|+.+++| +|||||||||||||+++|+++.+||+.|++++.++++||.++||++|||||||+|||+||++||++|
T Consensus 6 ~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 6 TQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp -------CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred cccccCCCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 456678899 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcc
Q 017611 108 MDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 108 m~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~ 187 (368)
|+|+..+|.+.+.+ ++++|||||+|||++.||+++++.+.++++.|++|++++||||++||||+||++|+|++++++
T Consensus 86 m~l~~~~l~~~~~~---l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v 162 (253)
T 3qas_B 86 MELFVWALDSEVKS---LHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKV 162 (253)
T ss_dssp ----CTHHHHHHHH---HHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999986653 788999999999999999999999999999999999999999999999999999999999874
Q ss_pred cchhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhh
Q 017611 188 SDESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQAL 267 (368)
Q Consensus 188 ~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
. +|.+
T Consensus 163 ~------------~g~l--------------------------------------------------------------- 167 (253)
T 3qas_B 163 Q------------QGNL--------------------------------------------------------------- 167 (253)
T ss_dssp H------------TTSC---------------------------------------------------------------
T ss_pred H------------cCCC---------------------------------------------------------------
Confidence 2 2332
Q ss_pred hhcccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHH
Q 017611 268 RAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHL 347 (368)
Q Consensus 268 ~t~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df 347 (368)
+|++|+++.|++|||+++.||||||||||||+|||||||||++||||||++++||||+.+||
T Consensus 168 ------------------~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~ 229 (253)
T 3qas_B 168 ------------------QPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDF 229 (253)
T ss_dssp ------------------CGGGCCHHHHHTTSTTTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHH
T ss_pred ------------------ChHHCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhcCEEEEECCCCCCcCCHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhc
Q 017611 348 VWAVLKFQRNHSFLEKKKK 366 (368)
Q Consensus 348 ~~al~~yq~r~rRfGK~~~ 366 (368)
++||.+||+|+||||+...
T Consensus 230 ~~Al~~y~~R~RRfG~~~~ 248 (253)
T 3qas_B 230 EGALNAFANRERRFGGTEP 248 (253)
T ss_dssp HHHHHHHHHHC--------
T ss_pred HHHHHHHhcCCcCCCCCCC
Confidence 9999999999999998643
No 7
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=4.3e-87 Score=642.99 Aligned_cols=238 Identities=27% Similarity=0.453 Sum_probs=224.3
Q ss_pred HHHhhcCCCCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 30 l~~~l~~~~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
+...+..+++|+|||||||||||||+++|+++.+||+.|++++.+|++||.++||++|||||||+|||+||++||++||+
T Consensus 46 ~~~~~~~~~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~ 125 (284)
T 2vg3_A 46 AAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMG 125 (284)
T ss_dssp CCCCCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHH
T ss_pred hhhhcccCCCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHH
Confidence 44566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccc
Q 017611 110 LLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSD 189 (368)
Q Consensus 110 L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~ 189 (368)
|+.++|.+.+. .++++|||||+||+++.||++++++++++++.|++|++++||||++||||+||++|+|++++++.
T Consensus 126 L~~~~l~~~~~---~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~- 201 (284)
T 2vg3_A 126 FNRDVVRRRRD---TLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVA- 201 (284)
T ss_dssp HHHHHHHHHHH---HHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH---HHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH-
Confidence 99999998654 37889999999999999999999999999999999999999999999999999999999998742
Q ss_pred hhhhhhccccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhh
Q 017611 190 ESLAVNANQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRA 269 (368)
Q Consensus 190 ~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t 269 (368)
+|.+
T Consensus 202 -----------~g~l----------------------------------------------------------------- 205 (284)
T 2vg3_A 202 -----------AGRL----------------------------------------------------------------- 205 (284)
T ss_dssp -----------TTSS-----------------------------------------------------------------
T ss_pred -----------cCCC-----------------------------------------------------------------
Confidence 2332
Q ss_pred cccCCCCCCccccccCCCCCCCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHH
Q 017611 270 GRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349 (368)
Q Consensus 270 ~~~~~~~i~~~e~~~~~~e~I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~ 349 (368)
++++|+++.|++|||++++||||||||||||+|||||||||++||||||++++||||+.+||++
T Consensus 206 ----------------~~~dI~e~~i~~~L~t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWPdF~~~df~~ 269 (284)
T 2vg3_A 206 ----------------NPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWA 269 (284)
T ss_dssp ----------------CGGGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHH
T ss_pred ----------------ChHHCCHHHHHHHhccCCCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCCcCCHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 017611 350 AVLKFQRNHSFLEK 363 (368)
Q Consensus 350 al~~yq~r~rRfGK 363 (368)
||.+||+|+||||+
T Consensus 270 Al~~Yq~R~RRfG~ 283 (284)
T 2vg3_A 270 ACEEYASRTRRFGS 283 (284)
T ss_dssp HHHHHHHSCCCSSC
T ss_pred HHHHHhccCCCCCC
Confidence 99999999999996
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=8.5e-85 Score=609.91 Aligned_cols=222 Identities=26% Similarity=0.498 Sum_probs=209.8
Q ss_pred CCCCEEEEEecCChhHHHhcC-CChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHH
Q 017611 38 PIPHHFAFIMDGNRRYAKKLN-VEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 38 ~iP~HIAiIMDGNRR~A~~~g-l~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~ 116 (368)
++|+|||||||||||||+++| +++.+||+.|++++.++++||.++||++|||||||+|||+||++||++||+|+..++.
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhcccchhhhhhc
Q 017611 117 ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196 (368)
Q Consensus 117 ~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~~~~~~~~~~~ 196 (368)
+.+.+ ++|||||++|+++.||+++++.++++++.|++|++++||||++||||+||++|+|++++++.
T Consensus 81 ~~~~~-----~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~-------- 147 (227)
T 2vg0_A 81 EICAP-----ANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKEL-------- 147 (227)
T ss_dssp HHTCT-----TTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHH--------
T ss_pred HHhcc-----ccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHH--------
Confidence 86542 78999999999999999999999999999999999999999999999999999999998742
Q ss_pred cccCCCcccchhhhHHhhccCCCcchhhhhhhhhcccccccccccCccccCCcccccCCCCCCchhhHhhhhhcccCCCC
Q 017611 197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276 (368)
Q Consensus 197 ~~v~~g~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 276 (368)
+|.+
T Consensus 148 ----~g~l------------------------------------------------------------------------ 151 (227)
T 2vg0_A 148 ----ANGA------------------------------------------------------------------------ 151 (227)
T ss_dssp ----HTTC------------------------------------------------------------------------
T ss_pred ----cCCC------------------------------------------------------------------------
Confidence 2333
Q ss_pred CCccccccCCCCC----CCHHHHHhhhhcCCCCCCCEEEEecCCccccCchhhhhcceeEEecCCCCCCCCHHHHHHHHH
Q 017611 277 TEGFEEKQGNNPI----INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVL 352 (368)
Q Consensus 277 i~~~e~~~~~~e~----I~~~~i~~~L~t~~~PdpDLLIRTSGE~RLSnFLLWQ~aytElyF~d~lWPdf~~~df~~al~ 352 (368)
+|++ |+++.|++|||+++.||||||||||||+|||||||||++||||||++++||||+.+||++||.
T Consensus 152 ---------~~~~~~~~I~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF~~~~~~~Al~ 222 (227)
T 2vg0_A 152 ---------TAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALR 222 (227)
T ss_dssp ---------CHHHHHHHCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHH
T ss_pred ---------ChhHhhccCCHHHHHHhhccCCCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCCCHHHHHHHHH
Confidence 2345 888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 017611 353 KFQRN 357 (368)
Q Consensus 353 ~yq~r 357 (368)
+||+|
T Consensus 223 ~y~~R 227 (227)
T 2vg0_A 223 DYSAR 227 (227)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99986
No 9
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=74.71 E-value=13 Score=35.15 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEE----EEeecCC---CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec---
Q 017611 67 EGFSSLISVLKYCYELGVKYVTI----YAFSIDN---FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG--- 136 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTv----YaFS~eN---~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG--- 136 (368)
.-++.|.++++||.+.||..+-| |.|.+.| |+.++ + ....+.++. ..+.++|+++-+.+
T Consensus 58 ~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~~~~w~~~~-----~---~~~~~~~~~---~~~~~~gi~i~~H~py~ 126 (301)
T 2j6v_A 58 ENLRDLERILRFNADHGFALFRIGQHLIPFASHPLFPYDWEG-----A---YEEELARLG---ALARAFGQRLSMHPGQY 126 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTSTTCCSCHHH-----H---HHHHHHHHH---HHHHHTTCEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccCcccccCCCcccCCcCC-----C---CHHHHHHHH---HHHHHcCCeEEEeCchh
Confidence 44678899999999999998887 5555554 44332 1 112222221 13456888887755
Q ss_pred -CCCCCCHHHHHH----HHHHHHHhcCCC----ceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 137 -NLKFLSEPVRVA----AEEVMMATARNS----KVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 137 -~l~~Lp~~v~~~----i~~~e~~T~~n~----~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
++....+++++. +.+..+..+.-+ .+++..+..|+.+++-.+-+.+.+.
T Consensus 127 iNL~S~~~e~re~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~~~~~e~~~~r~~e~l~ 184 (301)
T 2j6v_A 127 VNPGSPDPEVVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYGEKGKALRRFVENLR 184 (301)
T ss_dssp CCTTCSCHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTTCHHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCCCHHHHHHHHHHHHh
Confidence 333445566533 222222222212 4555555557766554444444443
No 10
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=73.20 E-value=6 Score=35.44 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEe--ec-----CCCC-CCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAF--SI-----DNFQ-RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaF--S~-----eN~k-R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.+... +. +.|. |+...-+.-++.+.+.|+++++ ...++||+|-+-
T Consensus 85 ~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~l~lE 160 (301)
T 3cny_A 85 IEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGE---IAAKYGLKVAYH 160 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHH---HHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 3556788999999999999999998752 11 1121 1100012233444555666554 356789998774
No 11
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=71.92 E-value=9.9 Score=33.91 Aligned_cols=64 Identities=6% Similarity=0.018 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.++......-..+.+. ++.+.+.|+++++ ...++||++-+-
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~----~~~~~~~l~~l~~---~a~~~Gv~l~lE 142 (286)
T 3dx5_A 79 FEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQE----RQEYVNRIRMICE---LFAQHNMYVLLE 142 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHH----HHHHHHHHHHHHH---HHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHH----HHHHHHHHHHHHH---HHHHhCCEEEEe
Confidence 345678899999999999999999976433211112233 3444555565553 355789988775
No 12
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=70.84 E-value=24 Score=30.85 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.+...... ...+.+ .-++.+.+.|+++++ ...++||++-+-
T Consensus 79 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~-~~~~~~---~~~~~~~~~l~~l~~---~a~~~gv~l~lE 142 (278)
T 1i60_A 79 HNEIITEFKGMMETCKTLGVKYVVAVPLVTE-QKIVKE---EIKKSSVDVLTELSD---IAEPYGVKIALE 142 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCBCS-SCCCHH---HHHHHHHHHHHHHHH---HHGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCC-CCCCHH---HHHHHHHHHHHHHHH---HHHhcCCEEEEE
Confidence 4567888999999999999999998643221 112222 223445555666553 356789988774
No 13
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=69.44 E-value=13 Score=33.94 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecC-----CC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSID-----NF-QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~e-----N~-kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
...+.+.+.++.|.++|+++|.+...+.. .| .|+....+.-++.+.+.|+++++ ...++||+|-+-
T Consensus 108 ~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~Gv~l~lE 179 (340)
T 2zds_A 108 RAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILD---VFDAEGVRFAHE 179 (340)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHH---HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 34677899999999999999998654321 12 14433344455666667777664 356789988774
No 14
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=69.08 E-value=14 Score=36.46 Aligned_cols=116 Identities=12% Similarity=0.188 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeec-CCCCCC----------------------------------------HH
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSI-DNFQRK----------------------------------------PA 102 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~-eN~kR~----------------------------------------~~ 102 (368)
......+.+++.|+.|.++||++| +|.|+. -.|-|. .+
T Consensus 98 ~r~~~ie~~k~~i~~aa~lGi~~v-~~nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~~~~~~pg~~~~~~~~ 176 (386)
T 3bdk_A 98 NRDALIENYKTSIRNVGAAGIPVV-CYNFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKE 176 (386)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEE-EECCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--------------CCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEE-EEcCcccccccccccccccCCCccccccchhhhhcccchhhccCCCCccccccHH
Confidence 467889999999999999999988 456552 223221 01
Q ss_pred -------------HHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCC-C----CCH--HHHHHHHHHHHHhcCCCce
Q 017611 103 -------------EVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLK-F----LSE--PVRVAAEEVMMATARNSKV 162 (368)
Q Consensus 103 -------------EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~-~----Lp~--~v~~~i~~~e~~T~~n~~~ 162 (368)
.-+.+.+.+...|+++++ ...++||++-+--+-. . +|. ...+.+.++.+.+. ....
T Consensus 177 ~~~~~~~~y~~~~~~e~~w~~l~~~L~~i~~---~Aee~GV~Laiep~dpp~~~~Gl~riv~t~e~~~rll~~vd-sp~~ 252 (386)
T 3bdk_A 177 EMKAIIENYRQNISEEDLWANLEYFIKAILP---TAEEAGVKMAIHPDDPPYGIFGLPRIITGQEAVERFLNLYD-SEHN 252 (386)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---HHHSSSCEEEECCCSSSSCCTTCCCCCCSHHHHHHHHHTTC-STTE
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHHH---HHHHhCCEEEEeeCCcccccccCCceeCCHHHHHHHHHhcC-CCCE
Confidence 124566777777887765 3578999998864311 0 111 11233444455553 3347
Q ss_pred EEEEEec---CCCHHHHHHHHHHHH
Q 017611 163 VLLVCLA---YTSADEIVHAVQESF 184 (368)
Q Consensus 163 ~LnI~~~---YggrdEI~~Avr~l~ 184 (368)
-|++|.+ +..-.++..++++..
T Consensus 253 gl~lDtG~l~~~~~~D~~~~i~~~~ 277 (386)
T 3bdk_A 253 GITMCVGSYASDPKNDVLAMTEYAL 277 (386)
T ss_dssp EEEEEHHHHHTSTTCCHHHHHHHHH
T ss_pred EEEEccCchhhcCCCCHHHHHHHhC
Confidence 7777753 333567888888875
No 15
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=68.97 E-value=18 Score=31.91 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.+...+.+.+.++.|.++|+++|.+..+.. ..++.+ .-++.+.+.|.++++ ...++||++-+-
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~--~~~~~~---~~~~~~~~~l~~l~~---~a~~~Gv~l~lE 141 (281)
T 3u0h_A 79 FLRELSLLPDRARLCARLGARSVTAFLWPS--MDEEPV---RYISQLARRIRQVAV---ELLPLGMRVGLE 141 (281)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCEEEEECCSE--ESSCHH---HHHHHHHHHHHHHHH---HHGGGTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecCC--CCCcch---hhHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 456778899999999999999998653221 123332 244455566666554 356889998774
No 16
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=68.63 E-value=12 Score=32.94 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.......+.+.+.++.|.++|+++|.+..-.......+.+ .-++.+.+.|+++++ ...++||++-+-
T Consensus 76 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~---~~~~~~~~~l~~l~~---~a~~~gv~l~lE 142 (275)
T 3qc0_A 76 SGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNID---AARRMVVEGIAAVLP---HARAAGVPLAIE 142 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHH---HHHHHHHHHHHHHHH---HHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHH---HHHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 3456778899999999999999999987522211112222 234555566666554 355788888775
No 17
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=68.56 E-value=9.5 Score=33.42 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~ 134 (368)
.....+.+.+.++.|.++|+++|.+..-... ...+. +..++.+.+.|+++++ ...++||++-+
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~-~~~~~---~~~~~~~~~~l~~l~~---~a~~~gv~l~~ 142 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVP-AGEDA---ERYRAVFIDNIRYAAD---RFAPHGKRILV 142 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCC-TTSCH---HHHHHHHHHHHHHHHH---HHGGGTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCC-CCCCH---HHHHHHHHHHHHHHHH---HHHHcCCEEEE
Confidence 4567788999999999999999987542210 11122 2234455556666554 35678999876
No 18
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=67.37 E-value=21 Score=31.68 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.+..-..+ ..+.+ .-++.+.+.|+++++ ...++||++-+-
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~--~~~~~---~~~~~~~~~l~~l~~---~a~~~Gv~l~lE 150 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMSGITE--GLDRK---ACEETFIENFRYAAD---KLAPHGITVLVE 150 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCBCBCT--TSCHH---HHHHHHHHHHHHHHH---HHGGGTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccCCCC--CCCHH---HHHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 4567788999999999999999988653111 12222 233455556666554 356789998875
No 19
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=66.03 E-value=12 Score=35.57 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEee-cCCCCCC
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFS-IDNFQRK 100 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS-~eN~kR~ 100 (368)
......+.+.++++.|.++|+++|.+ .|. ..+|.|.
T Consensus 89 ~r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p~~~w~~~ 125 (367)
T 1tz9_A 89 QRDHYIDNYRQTLRNLGKCGISLVCY-SFKPIFGWAKT 125 (367)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCEEEE-CCCSSCSCCCS
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEE-eCCCcCCccCc
Confidence 34667889999999999999999876 332 3455543
No 20
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=65.42 E-value=52 Score=30.77 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCEEEEEEeec-----CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-----ecC--CCCC
Q 017611 74 SVLKYCYELGVKYVTIYAFSI-----DNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-----IGN--LKFL 141 (368)
Q Consensus 74 ~il~~c~~~GI~~vTvYaFS~-----eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-----iG~--l~~L 141 (368)
+-++.+.+.|++.|.+|.-+. .|++++.+|.-..+.-..+ ..+++|+.|+. .|. -..-
T Consensus 87 ~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~----------~a~~~G~~V~~~l~~~~~~e~~~~~ 156 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLE----------AARQHQVRVRGYISCVLGCPYDGDV 156 (302)
T ss_dssp HHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHH----------HHHHTTCEEEEEEECTTCBTTTBCC
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH----------HHHHCCCeEEEEEEEEeeCCcCCCC
Confidence 456778889999999986443 4888998887655443322 24467888873 231 1234
Q ss_pred C-HHHHHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 142 S-EPVRVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 142 p-~~v~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
+ +.+.+.++.+.++-. -.|+|| +++.-=.++.+-++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~G~----d~i~l~DT~G~~~P~~~~~lv~~l~~~ 200 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGC----YEVSLGDTIGVGTAGATRRLIEAVASE 200 (302)
T ss_dssp CHHHHHHHHHHHHHTTC----SEEEEEESSSCCCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCC----CEEEEeCCCCCcCHHHHHHHHHHHHHh
Confidence 4 445555555555432 267777 5565566666666666544
No 21
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=64.85 E-value=13 Score=33.85 Aligned_cols=69 Identities=14% Similarity=0.050 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHH-HHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPA-EVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~-EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
......+.+.+.++.|.++|+++|.+..++......+.. ..+.-++.+.+.|+++++ ...++||+|-+-
T Consensus 101 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~l~lE 170 (309)
T 2hk0_A 101 VRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIAD---FANDLGINLCIE 170 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHH---HHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 345677899999999999999999854332211111110 122334555566666554 356789988774
No 22
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=64.48 E-value=69 Score=30.29 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=61.8
Q ss_pred HHHHHHcCCCEEEEEEee-----cCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-----ecCC--CCC-C
Q 017611 76 LKYCYELGVKYVTIYAFS-----IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-----IGNL--KFL-S 142 (368)
Q Consensus 76 l~~c~~~GI~~vTvYaFS-----~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-----iG~l--~~L-p 142 (368)
++.+.+.|++.|.+|.-. ..|++++.+|+-..+.-..+. .++.|.+|++ .|.- ... |
T Consensus 87 i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~----------ak~~G~~v~~~i~~~~~~~~~~~~~~ 156 (307)
T 1ydo_A 87 LENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNND----------AQKANLTTRAYLSTVFGCPYEKDVPI 156 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHH----------HHHTTCEEEEEEECTTCBTTTBCCCH
T ss_pred HHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHH----------HHHCCCEEEEEEEEEecCCcCCCCCH
Confidence 566777899999999632 369999998875544333222 3456787773 2311 123 3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 143 EPVRVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 143 ~~v~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
+.+.+.++.+.++-.. .++|| +++.-=+++.+-++.+.+.
T Consensus 157 ~~~~~~~~~~~~~Ga~----~i~l~DT~G~~~P~~v~~lv~~l~~~ 198 (307)
T 1ydo_A 157 EQVIRLSEALFEFGIS----ELSLGDTIGAANPAQVETVLEALLAR 198 (307)
T ss_dssp HHHHHHHHHHHHHTCS----CEEEECSSCCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCC----EEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 5566667666666443 57777 6677777777777777654
No 23
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=64.00 E-value=11 Score=34.82 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcE--EEE
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIR--VYF 134 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~gir--vr~ 134 (368)
....+.+.+.++.|.++|+++|.+..... ....+.. +.+.+.|+++++ ...++||+ +-+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~~~~~~~----~~~~~~l~~l~~---~a~~~Gv~~~l~~ 164 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMMPT---ITTHDEA----KLVCDIFNQASD---VIKAEGIATGFGY 164 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSCCC---CCSHHHH----HHHHHHHHHHHH---HHHHTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCC---CCCHHHH----HHHHHHHHHHHH---HHHHCCCcceEEE
Confidence 56678899999999999999998853211 1233333 445556666554 35678988 754
No 24
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=61.34 E-value=21 Score=32.84 Aligned_cols=59 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~ 134 (368)
....+.+.+.++.|.++|+++|.+-.. .. ....++. +.+.+.|+++++ ...++||++-+
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~--~~~~~~~----~~~~~~l~~l~~---~a~~~Gv~l~l 168 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQPSL-PR--IENEDDA----KVVSEIFNRAGE---ITKKAGILWGY 168 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECCC-CC--CSSHHHH----HHHHHHHHHHHH---HHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCC-CC--CCCHHHH----HHHHHHHHHHHH---HHHHcCCEEEE
Confidence 455788999999999999999997321 11 1233333 444556666554 35688998866
No 25
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=60.27 E-value=42 Score=29.52 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
-.....+.+.+.++.|.++|+++|.+..-+.. ...+.+ .-++.+.+.+++++. ..+||++-+-
T Consensus 83 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~-~~~~~~---~~~~~~~~~l~~l~a-----~~~gv~l~lE 145 (285)
T 1qtw_A 83 ALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHL-MQISEE---DCLARIAESINIALD-----KTQGVTAVIE 145 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECCCBCT-TTSCHH---HHHHHHHHHHHHHHH-----HCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECcCCCC-CCCCHH---HHHHHHHHHHHHHHh-----ccCCCEEEEe
Confidence 34567888999999999999999988753321 111333 233445556666543 2478888774
No 26
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=58.89 E-value=19 Score=31.92 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCC--CCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF--QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~--kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
......+.+.+.++.|.++|+++|.+..++.... -.+....+.-++.+.+.|+++++ ...++||++-+-
T Consensus 82 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~l~lE 152 (290)
T 2qul_A 82 VRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIK---VAEDYGIIYALE 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHH---HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 3556778999999999999999999765442111 10111111223445555665543 355789988775
No 27
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=58.43 E-value=77 Score=30.67 Aligned_cols=114 Identities=17% Similarity=0.259 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCC-CHHHHH-HHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCCC-
Q 017611 66 KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR-KPAEVQ-NLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKFL- 141 (368)
Q Consensus 66 ~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR-~~~EV~-~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~L- 141 (368)
..-++.|.++|+||.+.||+ +|-+|.+=|-= +..|+. .+.+.+...|.+ -+.++.++|+||-+- |....|
T Consensus 56 ~~Nl~~l~~il~~n~~~~I~---~yRiSS~l~P~~thp~~~~~~~~~~~~~l~~---iG~~a~~~~iRLS~HPgqF~vL~ 129 (310)
T 3tc3_A 56 SSNLLCLKNILEWNLKHEIL---FFRISSNTIPLASHPKFHVNWKDKLSHILGD---IGDFIKENSIRISMHPGQYVVLN 129 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---EEECCTTSSTTTTSTTCCCCHHHHTHHHHHH---HHHHHHHTTCEEEECCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCE---EEEeCcccCCCccccccccchHHHHHHHHHH---HHHHHHHcCcEEEecCCCCccCC
Confidence 45577889999999999997 56666543310 001111 112233333433 234678899999995 554444
Q ss_pred --CHH-HHHHHHHHHHHh-----cC-CCceEEEEEecCCCHHHHHHHHHHHHh
Q 017611 142 --SEP-VRVAAEEVMMAT-----AR-NSKVVLLVCLAYTSADEIVHAVQESFK 185 (368)
Q Consensus 142 --p~~-v~~~i~~~e~~T-----~~-n~~~~LnI~~~YggrdEI~~Avr~l~~ 185 (368)
.++ +.++|.+++--. -+ ...+++.++-.||+|++-.+-+.+-..
T Consensus 130 S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yGdK~~al~Rf~~n~~ 182 (310)
T 3tc3_A 130 SVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMNGKEESLNRFIENFR 182 (310)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCCCHHHHHHHHHHHHH
Confidence 233 444566554321 12 235777788889999876555444433
No 28
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=57.59 E-value=17 Score=32.53 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeec--CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSI--DNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~--eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
......+.+.+.++.|.++|+++|.+...+. ..+... ...+.-++.+.+.|+++++ ...++||++-+-
T Consensus 82 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~---~a~~~Gv~l~lE 151 (294)
T 3vni_A 82 IRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKT-IDKKGDWERSVESVREVAK---VAEACGVDFCLE 151 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSC-CCHHHHHHHHHHHHHHHHH---HHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCC-CCHHHHHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 3556788999999999999999998521221 122211 1122334455556666554 356789988775
No 29
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=56.14 E-value=48 Score=28.91 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
+-.....+.+.+.++.|.++|+++|.++.-.... ..+...+.-++.+.+.++++++ ...++||++-+-
T Consensus 69 ~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~--~~~~~~~~~~~~~~~~l~~l~~---~a~~~gv~l~lE 136 (254)
T 3ayv_A 69 EVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHG--RTPEEALERALPLAEALGLVVR---RARTLGVRLLLE 136 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTT--CCHHHHHHTHHHHHHHTHHHHH---HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcc--cccccHHHHHHHHHHHHHHHHH---HHhhcCCEEEEc
Confidence 3456778899999999999999999987532211 1111222334455556666553 245678888764
No 30
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=55.90 E-value=59 Score=28.61 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.+..-+.. ..+.+ .-++.+.+.|++++.. .+||++-+-
T Consensus 84 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~~---~~~~~~~~~l~~l~~~-----~~gv~l~lE 144 (287)
T 2x7v_A 84 WQKSVELLKKEVEICRKLGIRYLNIHPGSHL--GTGEE---EGIDRIVRGLNEVLNN-----TEGVVILLE 144 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCEECT--TSCHH---HHHHHHHHHHHHHHTT-----CCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCCCC--CCCHH---HHHHHHHHHHHHHHcc-----cCCCEEEEe
Confidence 4567788999999999999999998754432 22333 2344555666666532 278888774
No 31
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=54.95 E-value=52 Score=28.85 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHHHH
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAE 150 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~i~ 150 (368)
....+|+.|.+.|++.|.+=+.|+-++.=|++++...|. +.|..+ .....+|.|+- +.++..+.+.
T Consensus 90 ~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~---~~l~~~-------~~~~~~V~iv~----fd~~~~~~~~ 155 (168)
T 3gqe_A 90 AYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLN---HLLTAL-------DTTDADVAIYC----RDKKWEMTLK 155 (168)
T ss_dssp HHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHH---HHHHHH-------TTSCCEEEEEE----SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHH---HHHHHC-------CCCCCeEEEEE----cCHHHHHHHH
Confidence 345677778889999999999999999999999988664 334332 12234566663 6778888888
Q ss_pred HHHHHhc
Q 017611 151 EVMMATA 157 (368)
Q Consensus 151 ~~e~~T~ 157 (368)
++.....
T Consensus 156 ~~~~~~~ 162 (168)
T 3gqe_A 156 EAVARRE 162 (168)
T ss_dssp HHHHHCC
T ss_pred HHHHhhh
Confidence 7776544
No 32
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=54.00 E-value=24 Score=32.18 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEee--cCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcE-EEE
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFS--IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIR-VYF 134 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS--~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~gir-vr~ 134 (368)
+-.....+.+.+.++.|.++|+++|.+..-+ ...+. .+...+.-++.+.+.|+++++ ...++||+ |-+
T Consensus 107 ~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~---~a~~~Gv~~l~l 177 (316)
T 3qxb_A 107 ELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADAL-NPARREEIYAIARDMWIELAA---YAKRQGLSMLYV 177 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHT-CHHHHHHHHHHHHHHHHHHHH---HHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccC-CcccHHHHHHHHHHHHHHHHH---HHHhcCCeEEEE
Confidence 3446678899999999999999999763222 11121 222233445666777777664 35678988 765
No 33
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=51.69 E-value=16 Score=32.17 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=43.0
Q ss_pred hhHHHhcCCChhhhH---------HHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 017611 51 RRYAKKLNVEEGAGH---------KEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKE 121 (368)
Q Consensus 51 RR~A~~~gl~~~~GH---------~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~ 121 (368)
++.++++|+....-| ..-.+.+.+.++.|.++|+++|.+..... +.+..+.+ ..+.|+++++
T Consensus 57 ~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~-----~~~~~~~~---~~~~l~~l~~- 127 (272)
T 2q02_A 57 RNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLND-----GTIVPPEV---TVEAIKRLSD- 127 (272)
T ss_dssp HHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCS-----SBCCCHHH---HHHHHHHHHH-
T ss_pred HHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCC-----chhHHHHH---HHHHHHHHHH-
Confidence 445566666542222 22347789999999999999999854321 11222222 1344454443
Q ss_pred hhhhhcCCcEEEEe
Q 017611 122 QSIVNLYGIRVYFI 135 (368)
Q Consensus 122 ~~~~~~~girvr~i 135 (368)
...++||++-+-
T Consensus 128 --~a~~~gv~l~~E 139 (272)
T 2q02_A 128 --LFARYDIQGLVE 139 (272)
T ss_dssp --HHHTTTCEEEEC
T ss_pred --HHHHcCCEEEEE
Confidence 345789988763
No 34
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=51.65 E-value=52 Score=29.24 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEE-eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYA-FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG 136 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYa-FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG 136 (368)
.......+.+.+.++.|.++|+++|.+.. +..++ ..+.. +.+.+.|+++++ ...++||++-+--
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~---~~~~~----~~~~~~l~~l~~---~a~~~Gv~l~lE~ 159 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLHIGFVPES---SSPDY----SELVRVTQDLLT---HAANHGQAVHLET 159 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT---TSHHH----HHHHHHHHHHHH---HHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc---chHHH----HHHHHHHHHHHH---HHHHcCCEEEEec
Confidence 34567789999999999999999999864 22222 22333 444455565554 3567899887743
No 35
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=49.92 E-value=99 Score=29.91 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCh--hHHHhcCCChhhhHHHHHHH-H------------HHHHHHHHHcCCCEEEEEEeecCCCCCCHHH
Q 017611 39 IPHHFAFIMDGNR--RYAKKLNVEEGAGHKEGFSS-L------------ISVLKYCYELGVKYVTIYAFSIDNFQRKPAE 103 (368)
Q Consensus 39 iP~HIAiIMDGNR--R~A~~~gl~~~~GH~~G~~~-L------------~~il~~c~~~GI~~vTvYaFS~eN~kR~~~E 103 (368)
-|.|||++.|+-+ -| |..=.+...+|+...-. | .-+-+++..+||+.+.+ + --|
T Consensus 62 ~P~~iavaFD~~~~~tf-R~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~-----~-----G~E 130 (305)
T 3h7i_A 62 GYTKIVLCIDNAKSGYW-RRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDI-----D-----KYE 130 (305)
T ss_dssp TCCEEEEECCCCTTCCH-HHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECC-----T-----TCC
T ss_pred CCCEEEEEecCCCCcch-HhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEcc-----C-----Ccc
Confidence 3899999999752 34 33334666677765432 1 12444566689887653 2 357
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe-cCCCCC
Q 017611 104 VQNLMDLLLEKINELLKEQSIVNLYGIRVYFI-GNLKFL 141 (368)
Q Consensus 104 V~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i-G~l~~L 141 (368)
=|.++.-+..... ..|.+|.++ ||.|++
T Consensus 131 ADDiIgTLA~~a~----------~~g~~V~IvSgDKDl~ 159 (305)
T 3h7i_A 131 ANDHIAVLVKKFS----------LEGHKILIISSDGDFT 159 (305)
T ss_dssp HHHHHHHHHHHHH----------HTTCCEEEECSSCCCG
T ss_pred HHHHHHHHHHHHH----------HCCCcEEEEeCCCCcc
Confidence 7777765544332 346677665 787763
No 36
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=46.61 E-value=15 Score=26.87 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 017611 99 RKPAEVQNLMDLLLEKINEL 118 (368)
Q Consensus 99 R~~~EV~~Lm~L~~~~l~~~ 118 (368)
|..+||..+|+|+.+-+..+
T Consensus 32 ktdqEV~~~Memf~EDi~sl 51 (53)
T 1r4g_A 32 KTDQEVKAVMELVEEDIESL 51 (53)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHh
Confidence 56699999999998877653
No 37
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=45.40 E-value=1.8e+02 Score=26.66 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-e----c--CCCCCC
Q 017611 75 VLKYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-I----G--NLKFLS 142 (368)
Q Consensus 75 il~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-i----G--~l~~Lp 142 (368)
-++.+.+.|++.|.|+. |...|++++.+|.-..+.-+.+ ..++.|++|+. + | +-..-+
T Consensus 84 ~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~----------~a~~~G~~V~~~l~~~~~~e~~~~~~ 153 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIG----------AAINDGLAIRGYVSCVVECPYDGPVT 153 (295)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHH----------HHHHTTCEEEEEEECSSEETTTEECC
T ss_pred HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHH----------HHHHcCCeEEEEEEEEecCCcCCCCC
Confidence 34677889999999974 1234678888776544332222 24467888872 1 1 112334
Q ss_pred -HHHHHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 143 -EPVRVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 143 -~~v~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
+.+.+.++.+.++-. -.|+|| .++..=.++.+-++.+.+.
T Consensus 154 ~~~~~~~~~~~~~~G~----d~i~l~Dt~G~~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 154 PQAVASVTEQLFSLGC----HEVSLGDTIGRGTPDTVAAMLDAVLAI 196 (295)
T ss_dssp HHHHHHHHHHHHHHTC----SEEEEEETTSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCC----CEEEecCCCCCcCHHHHHHHHHHHHHh
Confidence 455555555555432 267777 5555666777667766554
No 38
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=44.64 E-value=28 Score=33.26 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCEEEEEecCChhHHHhcCCChhhhHHHHHH--------H-----HHHHHHHHHH--cCCCEEEEEEeecCCCCCCHHHH
Q 017611 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFS--------S-----LISVLKYCYE--LGVKYVTIYAFSIDNFQRKPAEV 104 (368)
Q Consensus 40 P~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~--------~-----L~~il~~c~~--~GI~~vTvYaFS~eN~kR~~~EV 104 (368)
|.|++++.||-+.-=|..-.+...+|+.... . +..+-+++.. +||+++.. +--|=
T Consensus 59 p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~----------~g~EA 128 (290)
T 1exn_A 59 ARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTI----------RGVEA 128 (290)
T ss_dssp EEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECC----------TTBCH
T ss_pred CCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEE----------CCcCH
Confidence 8999999997555334444677778887754 2 3334444555 89998653 22467
Q ss_pred HHHHHHHHH
Q 017611 105 QNLMDLLLE 113 (368)
Q Consensus 105 ~~Lm~L~~~ 113 (368)
++++..+..
T Consensus 129 DDviatLa~ 137 (290)
T 1exn_A 129 DDMAAYIVK 137 (290)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665543
No 39
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=44.23 E-value=82 Score=27.94 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ----RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~k----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
-.....+.+.+.++.|.++|+++|.+..- ...+. ...+ .++.+.+.|+++++ ...++||++-+-
T Consensus 98 ~r~~~~~~~~~~i~~a~~lGa~~v~~~~g-~~~~~~~~p~~~~----~~~~~~~~l~~l~~---~a~~~Gv~l~lE 165 (287)
T 3kws_A 98 IRKECMDTMKEIIAAAGELGSTGVIIVPA-FNGQVPALPHTME----TRDFLCEQFNEMGT---FAAQHGTSVIFE 165 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECSC-CTTCCSBCCSSHH----HHHHHHHHHHHHHH---HHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecC-cCCcCCCCCCHHH----HHHHHHHHHHHHHH---HHHHcCCEEEEE
Confidence 34567789999999999999999988531 11222 2223 33444555666553 356789988876
No 40
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=44.11 E-value=1.3e+02 Score=26.05 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec---CCCCCCHHHHH
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG---NLKFLSEPVRV 147 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG---~l~~Lp~~v~~ 147 (368)
.+.+.++.+.++|.+.|-++......+.-+..+++.+ .+ .+.++|+++-.++ .+....+..++
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~--------~~------~~~~~gl~~~~~~~~~~~~~~~~~~~~ 85 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQV--------RN------LAEKYGLEIVTINAVYPFNQLTEEVVK 85 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHH--------HH------HHHHTTCEEEEEEEETTTTSCCHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHH--------HH------HHHHcCCeEEechhhhccCCcHHHHHH
Confidence 3567778888888888887642211111111222222 21 2345677775443 33333355555
Q ss_pred HHHHHHHHhcCCCceEEEEEecCC---CHHHH-HHHHHHHHhc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAYT---SADEI-VHAVQESFKN 186 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Yg---grdEI-~~Avr~l~~~ 186 (368)
.+.++.+..+.-+--.+.++-++. ..+.+ ++.++++++.
T Consensus 86 ~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~ 128 (272)
T 2q02_A 86 KTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDL 128 (272)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHH
Confidence 555555544433333344433332 23455 6666666543
No 41
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=43.93 E-value=1.6e+02 Score=25.66 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCC---HHHHHHHHHHHHHHHHHHhhhhhhhhcCCc-EEEEecC----CCCCC
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRK---PAEVQNLMDLLLEKINELLKEQSIVNLYGI-RVYFIGN----LKFLS 142 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~---~~EV~~Lm~L~~~~l~~~~~~~~~~~~~gi-rvr~iG~----l~~Lp 142 (368)
.+.+.++++.++|+..|=+|.-+...|... ++++..+-++ +.++|+ .+-+.+. +.. .
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~gl~~~~~h~~~~~~l~s-~ 79 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRAL--------------REASGGLPAVIHASYLVNLGA-E 79 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHH--------------HHHTTCCCEEEECCTTCCTTC-S
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHH--------------HHHcCCceEEEecCcccCCCC-C
Confidence 578889999999999999976555555543 3444433222 335676 5555543 222 3
Q ss_pred HHHHH----HHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHhc
Q 017611 143 EPVRV----AAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 143 ~~v~~----~i~~~e~~T~~n~~~~LnI~~~YggrdEI~~Avr~l~~~ 186 (368)
++.++ .+.+..+..+.-+--.+++..++.+.+.++++++++++.
T Consensus 80 ~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~~~~~~~~~l~~l~~~ 127 (270)
T 3aam_A 80 GELWEKSVASLADDLEKAALLGVEYVVVHPGSGRPERVKEGALKALRL 127 (270)
T ss_dssp STHHHHHHHHHHHHHHHHHHHTCCEEEECCCBSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 33322 233333333322223444544444666777777777654
No 42
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=43.23 E-value=1.3e+02 Score=30.07 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=52.1
Q ss_pred HHHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-CCCCCC-HHHHHH
Q 017611 76 LKYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-NLKFLS-EPVRVA 148 (368)
Q Consensus 76 l~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~l~~Lp-~~v~~~ 148 (368)
++.+.+.|++.|.+|. |...|++++.+|+-..+.- .+. ...+.|.+|++.. +-..-+ +.+.+.
T Consensus 116 i~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~---~v~-------~ak~~G~~V~~~~eda~r~d~~~~~~v 185 (423)
T 3ivs_A 116 ARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATE---VIN-------FVKSKGIEVRFSSEDSFRSDLVDLLSL 185 (423)
T ss_dssp HHHHHHTTCSEEEEEEEC-------------CHHHHHHHH---HHH-------HHHTTTCEEEEEEESGGGSCHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHH---HHH-------HHHHCCCEEEEEEccCcCCCHHHHHHH
Confidence 3667788999999994 2334677777766543322 222 2445788888853 333334 445555
Q ss_pred HHHHHHHhcCCCceEEEEEe--cCCCHHHHHHHHHHHHh
Q 017611 149 AEEVMMATARNSKVVLLVCL--AYTSADEIVHAVQESFK 185 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~--~YggrdEI~~Avr~l~~ 185 (368)
++.+.++-++ .++||= ++.-=.++.+-++.+.+
T Consensus 186 ~~~~~~~Ga~----~i~l~DTvG~~~P~~v~~lv~~l~~ 220 (423)
T 3ivs_A 186 YKAVDKIGVN----RVGIADTVGCATPRQVYDLIRTLRG 220 (423)
T ss_dssp HHHHHHHCCS----EEEEEETTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC----ccccCCccCcCCHHHHHHHHHHHHh
Confidence 6666665442 577774 45556666666666654
No 43
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=42.97 E-value=41 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCC
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~ 97 (368)
+..+.+.+.++.+.++|+..+++|.|+..-+
T Consensus 217 et~e~~~~tl~~~~~l~~~~i~~y~l~~~p~ 247 (457)
T 1olt_A 217 QTPESFAFTLKRVAELNPDRLSVFNYAHLPT 247 (457)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEEECCCCTT
T ss_pred CCHHHHHHHHHHHHhcCcCEEEeecCcCCcC
Confidence 4467889999999999999999999995554
No 44
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=42.41 E-value=2e+02 Score=26.68 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=58.9
Q ss_pred HHHHHHcCCCEEEEEEeec-----CCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-----ecCC--CCCC-
Q 017611 76 LKYCYELGVKYVTIYAFSI-----DNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-----IGNL--KFLS- 142 (368)
Q Consensus 76 l~~c~~~GI~~vTvYaFS~-----eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-----iG~l--~~Lp- 142 (368)
++.+.+.|++.|.||.-.. .|++++.+|+-..+.-. +. ..+++|..|++ +|.- ...+
T Consensus 86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~---i~-------~a~~~G~~v~~~l~~~~~~~~~~~~~~ 155 (298)
T 2cw6_A 86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAI---LK-------AAQSANISVRGYVSCALGCPYEGKISP 155 (298)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHH---HH-------HHHHTTCEEEEEEETTTCBTTTBSCCH
T ss_pred HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHH---HH-------HHHHCCCeEEEEEEEEeeCCcCCCCCH
Confidence 5677889999999986322 47788887654443322 22 23456887763 2211 1234
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 143 EPVRVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 143 ~~v~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
+.+.+.++.+++.-. -.++|| +++..=.++.+-++.+.+.
T Consensus 156 ~~~~~~~~~~~~~Ga----~~i~l~DT~G~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 156 AKVAEVTKKFYSMGC----YEISLGDTIGVGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp HHHHHHHHHHHHTTC----SEEEEEETTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----CEEEecCCCCCcCHHHHHHHHHHHHHh
Confidence 455556666665533 256777 5666677777777776654
No 45
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=42.15 E-value=40 Score=30.17 Aligned_cols=63 Identities=6% Similarity=0.277 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCC-CCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF-QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~-kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
.....+.+.+.++.|.++|++.|.+..+. .| ..+.+ .-++.+.+.|+++++ ...++||++-+-
T Consensus 103 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~--~~~~~~~~---~~~~~~~~~l~~l~~---~a~~~Gv~l~lE 166 (295)
T 3cqj_A 103 RAQGLEIMRKAIQFAQDVGIRVIQLAGYD--VYYQEANN---ETRRRFRDGLKESVE---MASRAQVTLAME 166 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCS--CSSSCCCH---HHHHHHHHHHHHHHH---HHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCC--CCcCcCHH---HHHHHHHHHHHHHHH---HHHHhCCEEEEe
Confidence 34567889999999999999999875432 22 11222 123444455565553 345689988774
No 46
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=41.98 E-value=92 Score=29.11 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=26.6
Q ss_pred EEEecCCCC--C---CHHHHHHHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHhc
Q 017611 132 VYFIGNLKF--L---SEPVRVAAEEVMMATARNSKVVLLVC--LAYTSADEIVHAVQESFKN 186 (368)
Q Consensus 132 vr~iG~l~~--L---p~~v~~~i~~~e~~T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~ 186 (368)
+-+.|+++- | |+.+++.+.++.+......+.++|.+ +..+--.|=+.|+-+.+++
T Consensus 273 ~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~~a~v~~v~~ 334 (338)
T 2eja_A 273 KGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKS 334 (338)
T ss_dssp SEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 345566541 1 34555555555544333345666554 3344455555555555444
No 47
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=39.15 E-value=32 Score=32.75 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
.+++..+|+.|.+.|++.|-+=||+...|.=|++||..++.
T Consensus 197 ~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~ 237 (277)
T 3sig_A 197 RGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFA 237 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHH
Confidence 46678899999999999999999999999999999998865
No 48
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=38.07 E-value=24 Score=33.87 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEE
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYA 91 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYa 91 (368)
.....+.+.+.++.|.++|++.|.++.
T Consensus 111 r~~~i~~~~~~i~~A~~LGa~~vv~~~ 137 (387)
T 1bxb_A 111 RAYALRKSLETMDLGAELGAEIYVVWP 137 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECC
Confidence 456778899999999999999998864
No 49
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=37.89 E-value=55 Score=27.25 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCC
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN 96 (368)
+...|+-.|.+.+..++++|.+.|++.|.+.++. +|
T Consensus 129 ~~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~-~N 164 (209)
T 3pzj_A 129 PALRRTRLATEAVFLLLKTAFELGYRRCEWRCDS-RN 164 (209)
T ss_dssp TTTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEET-TC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecC-CC
Confidence 4566888899999999999999999999999854 45
No 50
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=37.56 E-value=90 Score=27.39 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh-cCCcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVN-LYGIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~-~~girvr~i 135 (368)
.....+.+.+.++.|.++|+++|.+..=+. .+ +.+.+.++++++. .. ++||++-+-
T Consensus 83 r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-----~~-------~~~~~~l~~l~~~---a~~~~gv~l~lE 139 (270)
T 3aam_A 83 WEKSVASLADDLEKAALLGVEYVVVHPGSG-----RP-------ERVKEGALKALRL---AGVRSRPVLLVE 139 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCBS-----CH-------HHHHHHHHHHHHH---HTCCSSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC-----CH-------HHHHHHHHHHHHh---hcccCCCEEEEe
Confidence 456788999999999999999998875332 21 4455556655532 44 679988773
No 51
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=37.56 E-value=81 Score=28.90 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCC----H------HH----HHHHHHHHHHHHHHHhhhhhhhhcCC
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRK----P------AE----VQNLMDLLLEKINELLKEQSIVNLYG 129 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~----~------~E----V~~Lm~L~~~~l~~~~~~~~~~~~~g 129 (368)
......+.+.+.++.|.++|+++|..-.+|. |.+. . .+ .+.-++.+.+.|+++++ ...++|
T Consensus 103 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~G 177 (335)
T 2qw5_A 103 QRQEALEYLKSRVDITAALGGEIMMGPIVIP--YGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGE---YAEIKK 177 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECCSSC--TTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEeccccCc--cccccCCcccccccccchhhhHHHHHHHHHHHHHHHHH---HHHHcC
Confidence 4567788999999999999999993211221 2221 0 11 23344555566666554 356789
Q ss_pred cEEEE
Q 017611 130 IRVYF 134 (368)
Q Consensus 130 irvr~ 134 (368)
|++-+
T Consensus 178 v~l~l 182 (335)
T 2qw5_A 178 VKLAI 182 (335)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 98877
No 52
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=36.37 E-value=2.3e+02 Score=25.74 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
.....|+.|.+.|++.|.+=+.|+-++.=|++++..+|-
T Consensus 136 ~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~ 174 (221)
T 3q71_A 136 IIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELII 174 (221)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHHH
Confidence 345567788889999999999999999999999887764
No 53
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=36.28 E-value=45 Score=31.97 Aligned_cols=67 Identities=9% Similarity=0.195 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhcCC--cEEEE
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRK-PAEVQNLMDLLLEKINELLKEQSIVNLYG--IRVYF 134 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~-~~EV~~Lm~L~~~~l~~~~~~~~~~~~~g--irvr~ 134 (368)
-.....+.+.+.++.|.++|++.|.++.-+. -+.-+ ......-++.+.+.|+++++ ...++| |+|-+
T Consensus 110 ~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~-g~~~~~~~~~~~~~~~~~e~L~~l~~---~A~~~G~~v~l~l 179 (394)
T 1xla_A 110 IRRFALAKVLHNIDLAAEMGAETFVMWGGRE-GSEYDGSKDLAAALDRMREGVDTAAG---YIKDKGYNLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEECCTTC-EESSGGGCCHHHHHHHHHHHHHHHHH---HHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCCC-ccccccccCHHHHHHHHHHHHHHHHH---HHHhcCCCeEEEE
Confidence 3567789999999999999999999864211 00000 11223445666667776664 345678 87765
No 54
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=35.52 E-value=47 Score=31.77 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEec-C---CCCC-CHHH
Q 017611 76 LKYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIG-N---LKFL-SEPV 145 (368)
Q Consensus 76 l~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG-~---l~~L-p~~v 145 (368)
++.+.+.|++.|.||. |+..|++++.+|+-.. +.+.+. ..++.|.+|++.- + -..- |+.+
T Consensus 102 i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~---~~~~v~-------~ak~~G~~v~~~~~~~~~~~~~~~~~~ 171 (337)
T 3ble_A 102 VDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTD---VSFVIE-------YAIKSGLKINVYLEDWSNGFRNSPDYV 171 (337)
T ss_dssp HHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHH---HHHHHH-------HHHHTTCEEEEEEETHHHHHHHCHHHH
T ss_pred HHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHH---HHHHHH-------HHHHCCCEEEEEEEECCCCCcCCHHHH
Confidence 5667889999999997 5667899998877433 322232 2345677777642 1 1111 2344
Q ss_pred HHHHHHHHHHhcCCCceEEEEEe--cCCCHHHHHHHHHHHHhc
Q 017611 146 RVAAEEVMMATARNSKVVLLVCL--AYTSADEIVHAVQESFKN 186 (368)
Q Consensus 146 ~~~i~~~e~~T~~n~~~~LnI~~--~YggrdEI~~Avr~l~~~ 186 (368)
.+.++.++++- --.++||= ++.-=.++.+-++.+.+.
T Consensus 172 ~~~~~~~~~~G----a~~i~l~DT~G~~~P~~v~~lv~~l~~~ 210 (337)
T 3ble_A 172 KSLVEHLSKEH----IERIFLPDTLGVLSPEETFQGVDSLIQK 210 (337)
T ss_dssp HHHHHHHHTSC----CSEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC----CCEEEEecCCCCcCHHHHHHHHHHHHHh
Confidence 44454444432 23577763 455566666666665544
No 55
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=34.99 E-value=2.2e+02 Score=26.59 Aligned_cols=105 Identities=12% Similarity=0.093 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+... ..+.|- .|=-+.=..+..+
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-----------grvpVi-aGvg~~~t~~ai~ 97 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK-----------GKIKLI-AHVGCVSTAESQQ 97 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TTSEEE-EECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC-----------CCCcEE-EecCCCCHHHHHH
Confidence 3578899999999999999888776778889999999999887754432 123332 2322211234444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
.++.+++. .-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 98 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 98 LAASAKRY---GFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA 136 (303)
T ss_dssp HHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCEEEecCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334556655445 48999999999988754
No 56
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=33.86 E-value=50 Score=31.68 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEeec--C-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcC--CcEEEEe
Q 017611 65 HKEGFSSLISVLKYCYELGVKYVTIYAFSI--D-NFQRKPAEVQNLMDLLLEKINELLKEQSIVNLY--GIRVYFI 135 (368)
Q Consensus 65 H~~G~~~L~~il~~c~~~GI~~vTvYaFS~--e-N~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~--girvr~i 135 (368)
.....+.+.+.++.|.++|++.|.++.=+. + ....+ ...-++.+.+.|++++.. ..++ ||++-+-
T Consensus 111 r~~~i~~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~---~~~~~~~~~e~L~~l~~~---A~~~g~gv~l~lE 180 (393)
T 1xim_A 111 RRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKD---VSAALDRYREALNLLAQY---SEDRGYGLRFAIE 180 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCC---HHHHHHHHHHHHHHHHHH---HHHHTCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCcCCccCC---HHHHHHHHHHHHHHHHHH---HHhcCCCcEEEEe
Confidence 456778999999999999999998875110 0 01122 223345555566665542 3444 8887664
No 57
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=32.87 E-value=2.5e+02 Score=25.88 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++|..+.||.-+-+..-+-|.+.-+.+|-..+++...+... ..+.|- .|--+.=..+..+.
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pvi-aGvg~~~t~~ai~l 87 (289)
T 2yxg_A 20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN-----------GRVQVI-AGAGSNCTEEAIEL 87 (289)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEE-EECCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcEE-EeCCCCCHHHHHHH
Confidence 577899999999999999888777778888999999998887754332 123332 23222222344444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+++. .-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 88 a~~a~~~---Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 88 SVFAEDV---GADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp HHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4444443 334556665445 48999999999998764
No 58
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=32.82 E-value=2.6e+02 Score=25.79 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHH-cCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 68 GFSSLISVLKYCYE-LGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 68 G~~~L~~il~~c~~-~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
-++.+.++++|..+ .||.-+-+..-+-|.+.-+.+|-..+++...+... ..+.|- .|--+.=..+..
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpvi-aGvg~~~t~~ai 89 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-----------DQIALI-AQVGSVNLKEAV 89 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEE-EECCCSCHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeEE-EecCCCCHHHHH
Confidence 35788999999999 99999888877778889999999999887754332 123322 232222223444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 90 ~la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 90 ELGKYATEL---GYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 129 (293)
T ss_dssp HHHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443 334555555445 47999999999998764
No 59
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=32.70 E-value=2.8e+02 Score=25.66 Aligned_cols=104 Identities=11% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+... ..+.|- .|--+ ..+.++
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpvi-aGvg~---~~t~~a 84 (294)
T 2ehh_A 20 YEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA-----------GRIKVI-AGTGG---NATHEA 84 (294)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEE-EECCC---SCHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcEE-EecCC---CCHHHH
Confidence 577899999999999999888776678888999999999887754332 123322 33222 234445
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+..+-+-.-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 5444444443445566665445 48999999999988764
No 60
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=32.28 E-value=98 Score=25.99 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
..+.++++.|.+.|++.|.+=+.|+-++.=|.++|..+|.
T Consensus 95 ~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~ 134 (149)
T 2eee_A 95 KSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE 134 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 4466777888899999999999999999999999998764
No 61
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=32.25 E-value=2.3e+02 Score=26.26 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|-- ...+.+
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pvi-aGvg---~~~t~~ 84 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADG-----------RIPVI-AGTG---ANATAE 84 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEE-EECC---CSSHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-----------CCcEE-EecC---CccHHH
Confidence 35788999999999999998888777788899999999998877544321 12222 2321 124566
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+..+.+.=.| .+.++|.+-++.+++..
T Consensus 85 ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 126 (292)
T 2ojp_A 85 AISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT 126 (292)
T ss_dssp HHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 66666655554445666665555 48999999999998754
No 62
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=32.14 E-value=3.2e+02 Score=25.49 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+... ..+.|- .|--+ ..+.
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpvi-aGvg~---~st~ 98 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG-----------DRAKLI-AGVGT---NNTR 98 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT-----------TTSEEE-EECCC---SCHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcEE-ecCCC---CCHH
Confidence 33578899999999999999888877778899999999999887754432 123322 33222 2344
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+-+-.-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 99 ~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 141 (304)
T 3cpr_A 99 TSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444444433445556665445 48999999999988754
No 63
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=31.13 E-value=1.2e+02 Score=27.16 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEe
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFI 135 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~i 135 (368)
-.....+.+.+.+++|.++|+++|.++.-+.. .++.+ .-++.+.+.|+++++. . +||+|-+-
T Consensus 88 ~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~--~~~~~---~~~~~~~~~l~~l~~~---a--~gv~l~lE 149 (303)
T 3aal_A 88 TFSLGVDFLRAEIERTEAIGAKQLVLHPGAHV--GAGVE---AGLRQIIRGLNEVLTR---E--QNVQIALE 149 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCEECT--TSCHH---HHHHHHHHHHHHHCCS---S--CSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCcCC--CCCHH---HHHHHHHHHHHHHHHh---C--CCCEEEEe
Confidence 35677889999999999999999998764432 22333 3455666677776542 2 78888763
No 64
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=30.97 E-value=1.5e+02 Score=25.44 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMD 109 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~ 109 (368)
..+..+++.|.+.|++.|.+=+.|+-++.=|.++|..+|.
T Consensus 106 ~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~ 145 (160)
T 2jyc_A 106 KSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIE 145 (160)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 4466777888899999999999999999999999998764
No 65
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.50 E-value=2.9e+02 Score=25.75 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|=-+ ..+.+
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-----------rvpVi-aGvg~---~~t~~ 95 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDK-----------RVPVI-AGTGS---NNTHA 95 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEE-EECCC---SCHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CceEE-eCCCC---CCHHH
Confidence 35788999999999999998887766788889999999998877544321 22222 23221 23444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 96 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 137 (301)
T 1xky_A 96 SIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 45444444433345555555444 47899999999998764
No 66
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=30.13 E-value=39 Score=26.77 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=30.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeecCC
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~eN 96 (368)
+...|+-.|.+.+..++++|.+.|++.|.+++++ +|
T Consensus 95 p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~-~N 130 (170)
T 2ge3_A 95 PAYRNKGLGARLMRRTLDAAHEFGLHRIELSVHA-DN 130 (170)
T ss_dssp GGGTTSSHHHHHHHHHHHHHHHHTCCEEEEEEET-TC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCceEEEEEEEc-CC
Confidence 3456777888999999999999999999999864 45
No 67
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=30.03 E-value=2.4e+02 Score=26.29 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|=-+.=..+..+
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-----------rvpVi-aGvg~~st~~ai~ 98 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDG-----------KIPVI-VGAGTNSTEKTLK 98 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTT-----------SSCEE-EECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEE-EcCCCccHHHHHH
Confidence 35788999999999999998888777788899999999998877544321 12222 2322222234444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
.++.+++. .-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 99 la~~A~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 137 (306)
T 1o5k_A 99 LVKQAEKL---GANGVLVVTPYYNKPTQEGLYQHYKYISERT 137 (306)
T ss_dssp HHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334555554444 47899999999998754
No 68
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=29.83 E-value=3.5e+02 Score=25.25 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||.-+-+..-+-|.+.=+.+|-..+++...+... .++.|- .|--+.=..+..
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-----------grvpvi-aGvg~~~t~~ai 100 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG-----------DRARVI-AGAGTYDTAHSI 100 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TTSEEE-EECCCSCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeEE-EeCCCCCHHHHH
Confidence 33578899999999999999988877778888899999999887754432 134442 242222234555
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 101 ~la~~a~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 140 (304)
T 3l21_A 101 RLAKACAAE---GAHGLLVVTPYYSKPPQRGLQAHFTAVADAT 140 (304)
T ss_dssp HHHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 555555554 334455554333 46899999999998764
No 69
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=29.55 E-value=2.3e+02 Score=26.52 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.++++|..+.||.-+.+..-+-|-+.=+.+|-..+++...+.. .++.| +.|--+.=..+..+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~------------grvpV-iaGvg~~~t~~ai~ 93 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA------------KSMQV-IVGVSAPGFAAMRR 93 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC------------TTSEE-EEECCCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc------------CCCcE-EEecCCCCHHHHHH
Confidence 357889999999999999998887777888899999998887664322 12343 23433333344455
Q ss_pred HHHHHHHHhcCCCceEEEE-EecCCCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLV-CLAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI-~~~YggrdEI~~Avr~l~~~~ 187 (368)
.++.+++.- -+. .|.+ -..+.+.++|.+-++.+++..
T Consensus 94 la~~A~~~G--ada-vlv~~P~~~~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 94 LARLSMDAG--AAG-VMIAPPPSLRTDEQITTYFRQATEAI 131 (313)
T ss_dssp HHHHHHHHT--CSE-EEECCCTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCE-EEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 555555442 233 3333 223357899999999998764
No 70
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Probab=29.39 E-value=81 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=29.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|+-.|..-+..+++++.+.|++.+.+++++
T Consensus 107 p~~rg~Gig~~ll~~~~~~a~~~g~~~i~~~~~~ 140 (172)
T 2r1i_A 107 PGRRGHRLGSALLAASCGLVRSRGGALLEINVDG 140 (172)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred cccccCCHHHHHHHHHHHHHHHCCCCEEEEEEcC
Confidence 4556888899999999999999999999998754
No 71
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=29.31 E-value=72 Score=30.37 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeec-CC--CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCC--cEEEE
Q 017611 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSI-DN--FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYG--IRVYF 134 (368)
Q Consensus 64 GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~-eN--~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~g--irvr~ 134 (368)
-.....+.+.+.++.|.++|++.|.++.-.. .+ +..+ ...-++.+.+.|+++++ ...++| |+|-+
T Consensus 110 ~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~---~~~~~~~~~e~L~~l~~---~A~~~G~~v~l~l 179 (386)
T 1muw_A 110 VRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKD---VRVALDRMKEAFDLLGE---YVTSQGYDIRFAI 179 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCC---HHHHHHHHHHHHHHHHH---HHHHHTCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCC---HHHHHHHHHHHHHHHHH---HHHhcCCCeEEEE
Confidence 3567788999999999999999999864211 00 1122 22334555566666654 345677 77765
No 72
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=28.88 E-value=1.9e+02 Score=27.13 Aligned_cols=105 Identities=9% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+... ..+.| +.|--.. .+.+
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~---~t~~ 97 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-----------KNRLL-LAGSGCE---STQA 97 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-----------TTSEE-EEECCCS---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-----------CCCcE-EEecCCC---CHHH
Confidence 3578899999999999999988887778889999999988876643221 12333 2343222 3444
Q ss_pred HHHHHHHHhcCCCceEEEEEecCC----CHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAYT----SADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Yg----grdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+..+.+.=.|- +.++|.+-++.+++..
T Consensus 98 ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~ 141 (307)
T 3s5o_A 98 TVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLS 141 (307)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhc
Confidence 554444444434455666655553 7899999999998764
No 73
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.27 E-value=3.4e+02 Score=25.17 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+.... .+.|- .|--.. .+.+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpvi-aGvg~~---~t~~ 90 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAK-----------RVPVI-AGTGAN---NTVE 90 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEE-EECCCS---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCC-----------CCcEE-EeCCCc---CHHH
Confidence 35788999999999999999888877788889999999998877544321 23332 232222 3444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 91 ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 91 AIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444444443445555554344 47899999999998764
No 74
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=27.79 E-value=4.2e+02 Score=25.57 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=52.7
Q ss_pred HHHHHHcCCCEEEEEE-----eecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCC--cEEEEec-CCCCCCH-HHH
Q 017611 76 LKYCYELGVKYVTIYA-----FSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYG--IRVYFIG-NLKFLSE-PVR 146 (368)
Q Consensus 76 l~~c~~~GI~~vTvYa-----FS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~g--irvr~iG-~l~~Lp~-~v~ 146 (368)
++.+.+.|++.|.+|. |.. |++++.+|+-..+.-..+. +.++| ++|++.- +-..-++ .+.
T Consensus 80 i~~a~~~g~~~v~i~~~~s~~~~~-~~~~s~~e~l~~~~~~v~~----------ak~~g~~~~v~~~~ed~~~~~~~~~~ 148 (382)
T 2ztj_A 80 AKVAVETGVQGIDLLFGTSKYLRA-PHGRDIPRIIEEAKEVIAY----------IREAAPHVEVRFSAEDTFRSEEQDLL 148 (382)
T ss_dssp HHHHHHTTCSEEEEEECC---------CCCHHHHHHHHHHHHHH----------HHHHCTTSEEEEEETTTTTSCHHHHH
T ss_pred HHHHHHcCCCEEEEEeccCHHHHH-HhCCCHHHHHHHHHHHHHH----------HHHcCCCEEEEEEEEeCCCCCHHHHH
Confidence 3667788999999994 555 8999999864443332222 23456 7888753 4444444 455
Q ss_pred HHHHHHHHHhcCCCceEEEEEec--CCCHHHHHHHHHHHH
Q 017611 147 VAAEEVMMATARNSKVVLLVCLA--YTSADEIVHAVQESF 184 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~--YggrdEI~~Avr~l~ 184 (368)
+.++.+.++ +. .++||=. |.-=.++.+-++.+.
T Consensus 149 ~~~~~~~~~-a~----~i~l~DT~G~~~P~~~~~lv~~l~ 183 (382)
T 2ztj_A 149 AVYEAVAPY-VD----RVGLADTVGVATPRQVYALVREVR 183 (382)
T ss_dssp HHHHHHGGG-CS----EEEEEETTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cC----EEEecCCCCCCCHHHHHHHHHHHH
Confidence 556666666 43 6777644 444555555444443
No 75
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*
Probab=27.79 E-value=1.4e+02 Score=29.65 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=51.9
Q ss_pred CCCEEEEEEeecCCCCC-----CHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCC----CCCHHHHHHHHHHH
Q 017611 83 GVKYVTIYAFSIDNFQR-----KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLK----FLSEPVRVAAEEVM 153 (368)
Q Consensus 83 GI~~vTvYaFS~eN~kR-----~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~----~Lp~~v~~~i~~~e 153 (368)
..+.+||+--.+-+|.+ +++|+..+++-+...+.. .+...|.+++++||-= -+|.+...+.-++.
T Consensus 212 ~~~~vTVlFaDIvgFT~ls~~~~p~evv~lLn~~~~~~~~------i~~~~g~~iKtiGDa~mavfg~p~~a~~~Al~m~ 285 (407)
T 1y10_A 212 GARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARD------LTAPPVWFIKTIGDAVMLVCPDPAPLLDTVLKLV 285 (407)
T ss_dssp TCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHH------HCCTTCEEEEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred ceeeEEEEEEEccCchHHHhhCCHHHHHHHHHHHHHHHHH------HHHcCcEEEEEecceEEEEECCHHHHHHHHHHHH
Confidence 35789998777777754 466776666655443332 2234688899999853 36776665555554
Q ss_pred HHhc-CCCceEEEEEecCC
Q 017611 154 MATA-RNSKVVLLVCLAYT 171 (368)
Q Consensus 154 ~~T~-~n~~~~LnI~~~Yg 171 (368)
+... .|..+.+-|++.+|
T Consensus 286 ~~l~~~~~~l~iRIGIhtG 304 (407)
T 1y10_A 286 EVVDTDNNFPRLRAGVASG 304 (407)
T ss_dssp HHHHTCTTSCCEEEEEEEE
T ss_pred HHHHHhCCCceEEEEEEEE
Confidence 4433 35566777777654
No 76
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=27.46 E-value=68 Score=26.80 Aligned_cols=26 Identities=4% Similarity=0.124 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHc-CC-CEEEEEEee
Q 017611 68 GFSSLISVLKYCYEL-GV-KYVTIYAFS 93 (368)
Q Consensus 68 G~~~L~~il~~c~~~-GI-~~vTvYaFS 93 (368)
..+.+.++++|+.++ |+ ..+.+..|.
T Consensus 108 n~~~~~~~~~~~~~~~g~~~~~~l~~~~ 135 (182)
T 3can_A 108 DEKNIKLSAEFLASLPRHPEIINLLPYH 135 (182)
T ss_dssp SHHHHHHHHHHHHHSSSCCSEEEEEECC
T ss_pred CHHHHHHHHHHHHhCcCccceEEEecCc
Confidence 345666777777777 77 667666553
No 77
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.28 E-value=3.2e+02 Score=26.08 Aligned_cols=106 Identities=9% Similarity=0.095 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||.-+.+..-.-|.+.-+.+|-..+++...+.... .+.|- +|--+.=..+.+
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~g-----------rvpVi-aGvg~~st~eai 116 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDR-----------RVPVL-IGTGGTNARETI 116 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEE-EECCSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEE-EecCCCCHHHHH
Confidence 345788999999999999998888767788889999999998877544321 22222 232222223444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 117 ~la~~A~~~---Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~ 156 (343)
T 2v9d_A 117 ELSQHAQQA---GADGIVVINPYYWKVSEANLIRYFEQVADSV 156 (343)
T ss_dssp HHHHHHHHH---TCSEEEEECCSSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444443 334566665445 48999999999998764
No 78
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=26.41 E-value=2.2e+02 Score=26.91 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCEEEEEEeecCCCCCCHH
Q 017611 72 LISVLKYCYELGVKYVTIYAFSIDNFQRKPA 102 (368)
Q Consensus 72 L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~ 102 (368)
+.+.++.+.++|.+.|-++......|.....
T Consensus 35 ~~e~l~~aa~~G~~~VEl~~~~~~p~~~~~~ 65 (386)
T 1muw_A 35 PVETVQRLAELGAHGVTFHDDDLIPFGSSDT 65 (386)
T ss_dssp HHHHHHHHHHHTCCEEEEEHHHHSCTTCCHH
T ss_pred HHHHHHHHHHcCCCEEEeeCCCCCcccCccc
Confidence 7888999999999999998644444554443
No 79
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=26.30 E-value=2.3e+02 Score=26.19 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|=-. ..+.++
T Consensus 20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pvi-aGvg~---~~t~~a 84 (292)
T 2vc6_A 20 EVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANG-----------RVPVI-AGAGS---NSTAEA 84 (292)
T ss_dssp HHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBE-EECCC---SSHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEE-EecCC---ccHHHH
Confidence 5778999999999999998887767788899999999998877544321 12221 23221 233444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+..+-+-.-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (292)
T 2vc6_A 85 IAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS 125 (292)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4444444443445556555445 38999999999988764
No 80
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=26.24 E-value=1.2e+02 Score=28.69 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-ecCCCCCCHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-IGNLKFLSEPV 145 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-iG~l~~Lp~~v 145 (368)
.-++.+.++++|..+.||.-+.+-.-+-|.+.-+.+|-..+++...+... ..+.|-+ +|. .+
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-----------grvpViaGvg~------st 92 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN-----------GRATVVAGIGY------SV 92 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEEEEECS------SH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC-----------CCCeEEecCCc------CH
Confidence 33578899999999999998777665668888999999999887754332 1233322 332 23
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 146 RVAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 146 ~~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
.++++.+..+-+-.-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 93 ~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 93 DTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4444444444333345555555445 48999999999998764
No 81
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=26.17 E-value=1.4e+02 Score=32.17 Aligned_cols=99 Identities=12% Similarity=0.203 Sum_probs=57.5
Q ss_pred HHHhcCCC--hhhhHHHHHH-------H-------------HHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH
Q 017611 53 YAKKLNVE--EGAGHKEGFS-------S-------------LISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL 110 (368)
Q Consensus 53 ~A~~~gl~--~~~GH~~G~~-------~-------------L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L 110 (368)
||.++|++ ..+|...|.+ . |.++++++.+-||+.+-=|-.+. |+.--..+.+
T Consensus 379 FAA~~G~eyvLveGwD~GW~~~~~~~~~~~fd~~~p~pd~Dl~eL~~YA~sKGV~iilw~~t~~-~~~n~e~~~d----- 452 (738)
T 2d73_A 379 FAAAHGFDAVLVEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKMMMHHETSA-SVRNYERHMD----- 452 (738)
T ss_dssp HHHHTTCSEEEECSCBTTGGGCSSSCCSSCCCSSCBCTTCCHHHHHHHHHHTTCEEEEEEECTT-BHHHHHHHHH-----
T ss_pred HHHHcCCCEEEEEeccCCcccccCccccccccccccCCCCCHHHHHHHHHhCCCEEEEEEcCCC-chhhHHHHHH-----
Confidence 68888886 3455556544 2 89999999999999765554332 2110112222
Q ss_pred HHHHHHHHhhhhhhhhcCCcEEEEecCCCCCC-------HHHHHHHHHHHHHhcCCCceEEEE
Q 017611 111 LLEKINELLKEQSIVNLYGIRVYFIGNLKFLS-------EPVRVAAEEVMMATARNSKVVLLV 166 (368)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp-------~~v~~~i~~~e~~T~~n~~~~LnI 166 (368)
+.|..+-+ +--.|||+=|+|+. +| +...+.-.++.+..+.+ ++.||+
T Consensus 453 --~~f~~~~~----~Gv~GVKvdF~g~~--~~r~~~h~~Q~~v~~Y~~i~~~AA~~-~LmVnf 506 (738)
T 2d73_A 453 --KAYQFMAD----NGYNSVKSGYVGNI--IPRGEHHYGQWMNNHYLYAVKKAADY-KIMVNA 506 (738)
T ss_dssp --HHHHHHHH----TTCCEEEEECCSSC--BSTTCCTTSHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred --HHHHHHHH----cCCCEEEeCccccC--cCCcccccchHHHHHHHHHHHHHHHc-CcEEEc
Confidence 22222211 23468899999862 33 44555566666655554 566665
No 82
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=25.71 E-value=90 Score=24.18 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 63 AGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 63 ~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
.|.-.|-.-+..++++|.+.|++.|.+..++
T Consensus 94 rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~ 124 (169)
T 3g8w_A 94 NDEIVNRELINHIIQYAKEQNIETLMIAIAS 124 (169)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCEEEEEEec
Confidence 7888899999999999999999999988764
No 83
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=25.59 E-value=53 Score=26.14 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=29.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|.-.|.+-+..++++|.+.|+..|.+++++
T Consensus 92 p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~ 125 (172)
T 2j8m_A 92 DDQRGKGLGVQLLQALIERARAQGLHVMVAAIES 125 (172)
T ss_dssp TTCTTSSHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred hhhcCCCHHHHHHHHHHHHHHHCCccEEEEEEcC
Confidence 3456777899999999999999999999998864
No 84
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=25.37 E-value=3.2e+02 Score=25.92 Aligned_cols=106 Identities=11% Similarity=0.062 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||.-+.+..-.-|.+.-+.+|-..+++...+... ..+.|-+ |--..=..+.+
T Consensus 52 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-----------grvpVia-Gvg~~st~eai 119 (332)
T 2r8w_A 52 VDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILR-----------GRRTLMA-GIGALRTDEAV 119 (332)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEEE-EECCSSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcEEE-ecCCCCHHHHH
Confidence 34578899999999999999888877778888999999999887754432 1233322 32222224444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 120 ~la~~A~~~---Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~ 159 (332)
T 2r8w_A 120 ALAKDAEAA---GADALLLAPVSYTPLTQEEAYHHFAAVAGAT 159 (332)
T ss_dssp HHHHHHHHH---TCSEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444443 234455554344 47899999999998764
No 85
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas aerugi PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Probab=25.04 E-value=81 Score=24.11 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=27.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|+-.|..-+..+++++.+.|++.+.+.+++
T Consensus 98 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 131 (166)
T 2fe7_A 98 PEYRGVGAGRRLLRELAREAVANDCGRLEWSVLD 131 (166)
T ss_dssp GGGCC--HHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred ccccCccHHHHHHHHHHHHHHHCCCCEEEEEEcc
Confidence 3455778888999999999999999999998764
No 86
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=24.55 E-value=4.1e+02 Score=24.90 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-++.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+... ..+.| +.|--.. .+.+
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~---st~e 106 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK-----------GRIPV-IAGTGAN---STRE 106 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCS---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCc---CHHH
Confidence 3578899999999999999988877778888999999999887755432 12333 2242222 3344
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 107 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 107 AVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 44444443333335555554334 47899999999998764
No 87
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=24.51 E-value=56 Score=26.02 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=29.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
+...|+-.|-.-|..++++|.+.|++.|.+.+++.
T Consensus 91 p~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~v~~~ 125 (166)
T 2ae6_A 91 PDFQDQGIGGSLLSYIKDMAEISGIHKLSLRVMAT 125 (166)
T ss_dssp GGGTTSSHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEeecC
Confidence 34567778889999999999999999999998643
No 88
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.50 E-value=96 Score=29.29 Aligned_cols=102 Identities=9% Similarity=0.084 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE-ecCCCCCCHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF-IGNLKFLSEPVR 146 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~-iG~l~~Lp~~v~ 146 (368)
-++.+.++++|..+.||.-+-+-.-+-|.+.=+.+|-..+++...+... ..+.|-+ +|. =..+..
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~-----------grvpViaGvg~---~t~~ai 96 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH-----------GRALVVAGIGY---ATSTAI 96 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSEEEEEECS---SHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-----------CCCcEEEEeCc---CHHHHH
Confidence 3578899999999999998877775668888999999999887754432 1233322 242 123344
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY---TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y---ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+.+|.+. +| .+.++|.+-++.+++..
T Consensus 97 ~la~~A~~~---Gadavlv~~-P~y~~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 97 ELGNAAKAA---GADAVMIHM-PIHPYVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp HHHHHHHHH---TCSEEEECC-CCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCCEEEEcC-CCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443 334444442 33 47899999999998764
No 89
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=24.31 E-value=85 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=29.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|+-.|..-+..++++|.+.|++.+.+.+.+
T Consensus 120 p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~ 153 (183)
T 3fix_A 120 PEYTHKKIGKTLLLEAEKIMKKKGILECRLYVHR 153 (183)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCceEEEEEec
Confidence 4556888899999999999999999999988754
No 90
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=23.70 E-value=1.6e+02 Score=26.42 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL 110 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L 110 (368)
..+..+++.|.+.|++.|.+=+.|+-++.=|++++..+|--
T Consensus 115 ~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~ 155 (199)
T 3kh6_A 115 KTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNIID 155 (199)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHHHH
Confidence 44677788899999999999999999999999999987643
No 91
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=23.26 E-value=1.7e+02 Score=25.78 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL 110 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L 110 (368)
......++.|.+.|++.|.+=+.|+-++.=|++++..+|--
T Consensus 104 ~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~ 144 (183)
T 4abl_A 104 SSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAIID 144 (183)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHHHH
Confidence 44567788899999999999999999999999999877643
No 92
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=23.10 E-value=2.5e+02 Score=25.91 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|=-+ ..+.
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pvi-~Gvg~---~~t~ 83 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNK-----------RIPVI-AGTGS---NNTA 83 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCEE-EECCC---SSHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcEE-EeCCc---ccHH
Confidence 445788999999999999998888777788899999999998877544321 12222 23221 2344
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+-+-.-+..|.+.=.| .+.++|.+-++.+++..
T Consensus 84 ~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 126 (291)
T 3a5f_A 84 ASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAV 126 (291)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 555544444443445566665455 48899998888887653
No 93
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI, protein structure initiative; 2.80A {Pseudomonas aeruginosa PAO1} SCOP: d.108.1.1
Probab=22.97 E-value=79 Score=23.63 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=28.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|.-.|..-+..+++++.+.|++.+.+.+.+
T Consensus 88 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 121 (153)
T 2eui_A 88 EEARRQLVADHLLQHAKQMARETHAVRMRVSTSV 121 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTEEEEEEEEET
T ss_pred HHHhcCChHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 3456788888999999999999999999988653
No 94
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=22.97 E-value=2.3e+02 Score=26.31 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... .+.|- .|--+ ..+.++
T Consensus 20 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------rvpvi-aGvg~---~~t~~a 84 (297)
T 2rfg_A 20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQG-----------RVPVI-AGAGS---NNPVEA 84 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCBE-EECCC---SSHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCC-----------CCeEE-EccCC---CCHHHH
Confidence 5778999999999999998887767788899999999998877544321 12221 23222 233444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+..+-+-.-+..+.+.=.| .+.++|.+-++.+++..
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (297)
T 2rfg_A 85 VRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4444333332334555555445 48999999999988764
No 95
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=22.86 E-value=3.1e+02 Score=23.68 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEE
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYF 134 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~ 134 (368)
..+.++.+.+.+.|++..++-.+ -||.-+.+++..-++.++..++. ....|++.-+
T Consensus 47 ~~~~~~~~~l~~~gl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~-------A~~lG~~~v~ 102 (281)
T 3u0h_A 47 HGDAAVEAMFQRRGLVLANLGLP--LNLYDSEPVFLRELSLLPDRARL-------CARLGARSVT 102 (281)
T ss_dssp HCHHHHHHHHHTTTCEECCEECC--SCTTSCHHHHHHHHHTHHHHHHH-------HHHTTCCEEE
T ss_pred cCHHHHHHHHHHcCCceEEeccc--ccccCCCHHHHHHHHHHHHHHHH-------HHHcCCCEEE
Confidence 34678888999999987765532 37876666666555544444432 3345665443
No 96
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=22.82 E-value=64 Score=24.57 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 61 EGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 61 ~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
...|+-.|..-+..++++|.+.|++.+.+.+.+
T Consensus 99 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 131 (164)
T 4e0a_A 99 TRRGGGIGRLIFEAIISYGKAHQVDAIELDVYD 131 (164)
T ss_dssp GGCSSSHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred HHhcCChHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 445667788899999999999999999998754
No 97
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=22.61 E-value=68 Score=25.03 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 61 EGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 61 ~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
...|.-.|.+.+..+++++.+.|++.|.+.+++
T Consensus 101 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~ 133 (164)
T 3eo4_A 101 FLWGKHIGRHSVSLVLKWLKNIGYKKAHARILE 133 (164)
T ss_dssp TSTTSSHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred HHcCccHHHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 455777888999999999999999999999864
No 98
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=22.33 E-value=2.9e+02 Score=26.04 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||.-+.+..-+-|-+.=+.+|-..+++...+... ..+.| +.|--+.=..+..
T Consensus 29 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai 96 (318)
T 3qfe_A 29 LDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVG-----------PDFPI-MAGVGAHSTRQVL 96 (318)
T ss_dssp ECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC-----------TTSCE-EEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHH
Confidence 34578899999999999999988887778888999999999887754432 12333 2243333334444
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC----CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY----TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y----ggrdEI~~Avr~l~~~~ 187 (368)
+.++.+++. .-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 97 ~la~~a~~~---Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 97 EHINDASVA---GANYVLVLPPAYFGKATTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp HHHHHHHHH---TCSEEEECCCCC---CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc---CCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhC
Confidence 444554443 334455555435 36899999999998764
No 99
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=22.21 E-value=4.3e+02 Score=24.34 Aligned_cols=105 Identities=10% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+... ..+.| +.|--..=..+..+
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai~ 88 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-----------KRVPV-IAGTGTNDTEKSIQ 88 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCcccHHHHHH
Confidence 3578899999999999999988887778888999999999887755432 12333 22422222244444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
.++.+++. .-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 89 la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 89 ASIQAKAL---GADAIMLITPYYNKTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp HHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 44444443 334455554333 57899999999998764
No 100
>3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.87 E-value=78 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 61 EGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 61 ~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
...|.-.|..-+..+++++.+.|++.+.+.+.+
T Consensus 89 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~~~~ 121 (163)
T 3d8p_A 89 GYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTID 121 (163)
T ss_dssp GGTTTTHHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred hhccCCHHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 455777888999999999999999999998753
No 101
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=21.85 E-value=94 Score=23.66 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=28.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|.-.|..-+..+++++.+.|++.+.+++.+
T Consensus 78 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 111 (157)
T 1mk4_A 78 PDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSP 111 (157)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCCcEEEEEEcC
Confidence 4456888899999999999999999999988743
No 102
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=21.72 E-value=1.8e+02 Score=25.39 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHH
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNL 107 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~L 107 (368)
....+|+.|.+.|++.|.+=+.|+-.|.=|++++...
T Consensus 96 ~y~~~L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~a 132 (168)
T 3gpg_A 96 AYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQS 132 (168)
T ss_dssp HHHHHHHHHHHHTCSEEEEECTTSSTTSTTSCCHHHH
T ss_pred HHHHHHHHHHHhCCcEEEECccccCCCCCCHHHHHHH
Confidence 3456777788899999999999999999999988873
No 103
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=21.69 E-value=4.1e+02 Score=24.41 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHHH
Q 017611 69 FSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148 (368)
Q Consensus 69 ~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~~ 148 (368)
.+.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+.... .+.| +.|--..=..+..+.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~g-----------r~pv-iaGvg~~~t~~ai~l 88 (291)
T 3tak_A 21 WKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANK-----------RIPI-IAGTGANSTREAIEL 88 (291)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCE-EEECCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCC-----------CCeE-EEeCCCCCHHHHHHH
Confidence 5788999999999999999887766788888999999888877544321 2333 224322223444444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 149 AEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 149 i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++.+++. .-+.++.+.=.| .+.++|.+-++.+++..
T Consensus 89 a~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 89 TKAAKDL---GADAALLVTPYYNKPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHhc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4444443 334455554333 47899999999998764
No 104
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=21.57 E-value=4.6e+02 Score=24.59 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-++.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+.... .+.| +.|--+. .+.
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpV-iaGvg~~---st~ 104 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAK-----------RVPV-VAGAGSN---STS 104 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT-----------SSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCC-----------CCcE-EEeCCCC---CHH
Confidence 335788999999999999999888767788888999999998877554321 2222 2232222 344
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+-+-.-+.+|.+.=.| .+.++|.+-++.+++..
T Consensus 105 ~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 105 EAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444444333345555554344 47899999999998764
No 105
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=21.55 E-value=66 Score=25.90 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=29.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeec
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSI 94 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS~ 94 (368)
+...|+-.|-.-|..++++|.+.|++.+.+..++.
T Consensus 98 p~~rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~ 132 (170)
T 2bei_A 98 PEYRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDW 132 (170)
T ss_dssp GGGCSSSHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred hHhcCCCHHHHHHHHHHHHHHHCCCCEEEEEEecc
Confidence 34457778888899999999999999999987643
No 106
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=21.52 E-value=4.9e+02 Score=24.10 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHHH
Q 017611 68 GFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRV 147 (368)
Q Consensus 68 G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~~ 147 (368)
-.+.+.++++|..+.||.-+.+..-+-|.+.-+.+|-..+++...+.... ..+.|- .|--.. .+.+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g----------~rvpvi-aGvg~~---~t~~ 91 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG----------TKVKVL-AGAGSN---ATHE 91 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT----------SSCEEE-EECCCS---SHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC----------CCCeEE-EeCCCC---CHHH
Confidence 35788999999999999999888777788889999999998877543321 124432 243222 3444
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 148 AAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 148 ~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
+++.+..+-+-.-+..+.+.=.| .+.++|.+-++.+++..
T Consensus 92 ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 133 (301)
T 3m5v_A 92 AVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV 133 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 55444444444445556665444 47899999999998764
No 107
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=21.43 E-value=3.1e+02 Score=25.76 Aligned_cols=106 Identities=9% Similarity=0.141 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCCCCHHHH
Q 017611 67 EGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVR 146 (368)
Q Consensus 67 ~G~~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~Lp~~v~ 146 (368)
.-.+.+.++++|..+.||.-+.+..-+-|.+.=+.+|-..+++...+.... .+.| +.|--.. .+.
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g-----------rvpV-iaGvg~~---~t~ 106 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH-----------RVPT-IVSVSDL---TTA 106 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT-----------SSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-----------CCcE-EEecCCC---CHH
Confidence 345888999999999999998888877788899999999998877554321 1222 2232222 334
Q ss_pred HHHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHhcc
Q 017611 147 VAAEEVMMATARNSKVVLLVCLAY--TSADEIVHAVQESFKNK 187 (368)
Q Consensus 147 ~~i~~~e~~T~~n~~~~LnI~~~Y--ggrdEI~~Avr~l~~~~ 187 (368)
++++.+..+-+-.-+.++.+.=.| -+.++|.+-++.+++..
T Consensus 107 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 107 KTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443333334455554333 47899999999998764
No 108
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=21.36 E-value=3.9e+02 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCCC-CCHHHHHHHHHHHHHHHH
Q 017611 71 SLISVLKYCYELGVKYVTIYAFSIDNFQ-RKPAEVQNLMDLLLEKIN 116 (368)
Q Consensus 71 ~L~~il~~c~~~GI~~vTvYaFS~eN~k-R~~~EV~~Lm~L~~~~l~ 116 (368)
.+.++.+.+.+.|++..++.+.. ||. ..++..+...+.+...++
T Consensus 47 ~~~~~~~~l~~~gl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 91 (278)
T 1i60_A 47 SLDDLAEYFQTHHIKPLALNALV--FFNNRDEKGHNEIITEFKGMME 91 (278)
T ss_dssp CHHHHHHHHHTSSCEEEEEEEEE--CCSSCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCeeeecccc--ccccCCHHHHHHHHHHHHHHHH
Confidence 45677788999999988876643 665 455555555555544444
No 109
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=21.10 E-value=4.7e+02 Score=24.95 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=77.1
Q ss_pred ccccCCcCccCchHHHHHHHHHHHHHHHHhhcCC---CCCCEEEEEecCChhHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 017611 4 YDDAGGAAATTPTQLLESLGSFMRRCLFRVLAVG---PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCY 80 (368)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~iP~HIAiIMDGNRR~A~~~gl~~~~GH~~G~~~L~~il~~c~ 80 (368)
||+.|| .-++....+....++++++..+-+.. .+|- | +...|+. .+++...
T Consensus 217 fDs~~~--~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pv-i-~f~~g~~----------------------~~l~~l~ 270 (368)
T 4exq_A 217 FDTWGG--ALADGAYQRFSLDYIRRVVAQLKREHDGARVPA-I-AFTKGGG----------------------LWLEDLA 270 (368)
T ss_dssp EETTGG--GSCTTHHHHHTHHHHHHHHHTSCCEETTEECCE-E-EEETTCG----------------------GGHHHHH
T ss_pred eCCccc--cCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcE-E-EEcCCcH----------------------HHHHHHH
Confidence 455555 34566667777777777665443322 2552 1 2233331 2345557
Q ss_pred HcCCCEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhcCCcEEEEecCCCC-----CCHHHHHHHHHHHHH
Q 017611 81 ELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKF-----LSEPVRVAAEEVMMA 155 (368)
Q Consensus 81 ~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~~~girvr~iG~l~~-----Lp~~v~~~i~~~e~~ 155 (368)
++|+..+++ .|.=+.+|.. +. .|-++-+.|+++- =|+.+.+.+.++.+.
T Consensus 271 ~~g~d~i~~------d~~~dl~~ak-----------~~---------~g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~~ 324 (368)
T 4exq_A 271 ATGVDAVGL------DWTVNLGRAR-----------ER---------VAGRVALQGNLDPTILFAPPEAIRAEARAVLDS 324 (368)
T ss_dssp TSSCSEEEC------CTTSCHHHHH-----------HH---------HTTSSEEEEEECGGGGGSCHHHHHHHHHHHHHH
T ss_pred HhCCCEEee------CCCCCHHHHH-----------HH---------hCCCEEEEECCCHHHhCCCHHHHHHHHHHHHHH
Confidence 789998764 2433333322 11 1223446687763 257888888888887
Q ss_pred hcCCCceEEEEE--ecCCCHHHHHHHHHHHHhcc
Q 017611 156 TARNSKVVLLVC--LAYTSADEIVHAVQESFKNK 187 (368)
Q Consensus 156 T~~n~~~~LnI~--~~YggrdEI~~Avr~l~~~~ 187 (368)
.....+.++|.+ +..+.-.|=+.|+-+.++++
T Consensus 325 ~g~~~g~I~n~Ghgi~p~tp~Env~a~veav~~~ 358 (368)
T 4exq_A 325 YGNHPGHVFNLGHGISQFTPPEHVAELVDEVHRH 358 (368)
T ss_dssp HCSCSCEEEEESSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHHh
Confidence 765678999986 44556677777777777664
No 110
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=20.56 E-value=84 Score=29.83 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCCEEEE
Q 017611 72 LISVLKYCYELGVKYVTI 89 (368)
Q Consensus 72 L~~il~~c~~~GI~~vTv 89 (368)
+..+.+++..+||+++..
T Consensus 131 ~~~~~~lL~~~gi~~i~a 148 (336)
T 1rxw_A 131 VDSAKTLLSYMGIPFVDA 148 (336)
T ss_dssp HHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhCCCCEEEc
Confidence 556777888899999864
No 111
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic, structur genomics, PSI-2, protein structure initiative; HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP: d.108.1.1 PDB: 3pgp_A*
Probab=20.37 E-value=93 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=28.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHH-cCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYE-LGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~-~GI~~vTvYaFS 93 (368)
+...|+-.|..-+..+++++.+ .|++.+.+...+
T Consensus 85 p~~rg~Gig~~l~~~~~~~~~~~~g~~~i~l~~~~ 119 (160)
T 2i6c_A 85 PAARGLGVARYLIGVMENLAREQYKARLMKISCFN 119 (160)
T ss_dssp GGGTTTTHHHHHHHHHHHHHHHHHCCSEEEEEEET
T ss_pred HHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEec
Confidence 3456777888999999999999 899999998754
No 112
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=20.29 E-value=81 Score=24.65 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Q 017611 60 EEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93 (368)
Q Consensus 60 ~~~~GH~~G~~~L~~il~~c~~~GI~~vTvYaFS 93 (368)
+...|.-.|-.-+..++++|.+.|++.+.+.++.
T Consensus 113 p~~rg~Gig~~ll~~~~~~a~~~g~~~i~l~~~~ 146 (179)
T 2oh1_A 113 RAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIE 146 (179)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4555777888999999999999999999998863
No 113
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=20.03 E-value=1.3e+02 Score=25.35 Aligned_cols=41 Identities=22% Similarity=0.102 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEEEeecCCCCCCHHHHHHHHHH
Q 017611 70 SSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLMDL 110 (368)
Q Consensus 70 ~~L~~il~~c~~~GI~~vTvYaFS~eN~kR~~~EV~~Lm~L 110 (368)
+.+..+++.|.+.|++.|.+=+.|+-++.=|++++..+|.-
T Consensus 91 ~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~ 131 (159)
T 2dx6_A 91 KATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVMLE 131 (159)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEECCccCCCCCCCHHHHHHHHHH
Confidence 44667778888899999999999999999999999887643
Done!