RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017611
(368 letters)
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 176 bits (449), Expect = 9e-54
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 46 IMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQ 105
IMDGNRR+AKK + GH+ G ++ +L++C ELG+KY+T+YAFS +N++R EV
Sbjct: 1 IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60
Query: 106 NLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLL 165
LM+LL K+ LL++ ++ G+RV IG+L L E +R A E+ AT N+ + L
Sbjct: 61 FLMELLERKLRRLLED---LHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLN 117
Query: 166 VCLAYTSADEIVHAVQESFKNKSDESLAVN 195
+ L Y DEIV AV+ ++ +D L+
Sbjct: 118 IALNYGGRDEIVDAVKRLARDVADGKLSPE 147
Score = 92.2 bits (230), Expect = 7e-22
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349
I+ +EK++Y + PDPD+L+R+SGE RLSNFLLWQ++ L LWP+ L+
Sbjct: 149 IDEEVIEKYLYTSDLPDPDLLIRTSGEKRLSNFLLWQSAYAELYFTDTLWPDFTKEDLLR 208
Query: 350 AVLKFQRN 357
A+ +Q
Sbjct: 209 AIRDYQSR 216
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
(cis-IPPS); homodimers which catalyze the successive
1'-4 condensation of the isopentenyl diphosphate (IPP)
molecule to trans,trans-farnesyl diphosphate (FPP) or to
cis,trans-FPP to form long-chain polyprenyl
diphosphates. A few can also catalyze the condensation
of IPP to trans-geranyl diphosphate to form the
short-chain cis,trans- FPP. In prokaryotes, the
cis-IPPS, undecaprenyl diphosphate synthase (UPP
synthase) catalyzes the formation of the carrier lipid
UPP in bacterial cell wall peptidooglycan biosynthesis.
Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl
diphosphate (dedol-PP) synthase catalyzes the formation
of the polyisoprenoid glycosyl carrier lipid dolichyl
monophosphate. cis-IPPS are mechanistically and
structurally distinct from trans-IPPS, lacking the DDXXD
motifs, yet requiring Mg2+ for activity.
Length = 221
Score = 165 bits (419), Expect = 2e-49
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 3/143 (2%)
Query: 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR 99
P H AFIMDGNRR+AK+ ++ GHK G L +L++C ELGVK VT+YAFS +N++R
Sbjct: 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60
Query: 100 KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARN 159
EV LM+L + + +LKE + G+R+ IG+L L E ++ ++ AT N
Sbjct: 61 PKEEVDFLMELFRDVLRRILKE---LEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNN 117
Query: 160 SKVVLLVCLAYTSADEIVHAVQE 182
+ L V Y EI+HAV+E
Sbjct: 118 TGFTLNVAFNYGGRQEIIHAVRE 140
Score = 80.0 bits (198), Expect = 2e-17
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 281 EEKQGNNPIINLVD--VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTS-NCLLDSPAA 337
+ K G ++ + + KH+Y +PDPD+L+R+SGE RLSNFLLWQ++ + L S
Sbjct: 144 KVKAGKLTPEDIDESTLNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSD-V 202
Query: 338 LWPEIGLWHLVWAVLKFQR 356
LWP+ W + A+L +QR
Sbjct: 203 LWPDFTFWDFLRALLDYQR 221
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 156 bits (397), Expect = 7e-46
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 38 PIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNF 97
+P H A IMDGNRR+AKK + GHK G +L +L++C ELG+KY+T+YAFS +N+
Sbjct: 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENW 74
Query: 98 QRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATA 157
+R EV LM+L + + E LK+ G+R+ IG+L L E VR A E+ T
Sbjct: 75 KRPKEEVSFLMELFEKALREELKKLHK---NGVRIRIIGDLSRLPEEVREAIEKAEEKTK 131
Query: 158 RNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNA 196
N+ + L + + Y DEIV AV++ ++ + L+
Sbjct: 132 NNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPED 170
Score = 73.9 bits (182), Expect = 4e-15
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ H+Y + PDPD+L+R+SGE RLSNFLLWQ++ L LWP+ L+ A+ +
Sbjct: 176 ISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDY 235
Query: 355 Q-RNHSF 360
Q R F
Sbjct: 236 QKRERRF 242
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase. This enzyme
builds undecaprenyl diphosphate, a molecule that in
bacteria is used a carrier in synthesizing cell wall
components. Alternate name: undecaprenyl pyrophosphate
synthetase. Activity has been demonstrated
experimentally for members of this family from
Micrococcus luteus, E. coli, Haemophilus influenzae, and
Streptococcus pneumoniae [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 226
Score = 132 bits (333), Expect = 1e-36
Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 42 HFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP 101
H A IMDGN R+AKK GHK G SL +L++C LGV+ +T+YAFS +N++R
Sbjct: 2 HVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPK 61
Query: 102 AEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSK 161
EV LM+L +K++ +E ++ Y +R+ IG+L LS+ ++ ++ T N+
Sbjct: 62 EEVDFLMELFEKKLD---REVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTD 118
Query: 162 VVLLVCLAYTSADEIVHAVQES 183
L + Y +EI+HAV++
Sbjct: 119 FTLNIAFNYGGRNEILHAVKQI 140
Score = 77.4 bits (191), Expect = 1e-16
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 283 KQGNNPIINLVD--VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWP 340
K G ++ + + KH+Y A P D+L+R+SGE R+SNFLLWQ+S L LWP
Sbjct: 145 KSGKLLPEDIDEETLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWP 204
Query: 341 EIGLWHLVWAVLKFQRNHS 359
+ A+L FQ H
Sbjct: 205 DFDPQDFELAILDFQFRHR 223
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 119 bits (302), Expect = 7e-32
Identities = 58/150 (38%), Positives = 84/150 (56%), Gaps = 11/150 (7%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
G IP H A IMDGN R+AKK + AGHK G ++ + K ELGVK +T+YAFS +N
Sbjct: 20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTEN 79
Query: 97 FQRKPAEVQNLMDLLLEKIN----ELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEV 152
++R EV+ LM+L +E ++ EL++ ++V IG+ L E A E+
Sbjct: 80 WKRPKDEVKFLMNLPVEFLDKFVPELIEN-------NVKVNVIGDTDRLPEHTLRALEKA 132
Query: 153 MMATARNSKVVLLVCLAYTSADEIVHAVQE 182
+ T N+ ++L L Y EIV AV+E
Sbjct: 133 IEKTKNNTGLILNFALNYGGRAEIVSAVKE 162
Score = 63.7 bits (156), Expect = 1e-11
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ ++ PDPD+L+R+SGE RLSNFLLWQ + LWP+ L+ A+ +
Sbjct: 182 ISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDY 241
Query: 355 QRNH 358
Q
Sbjct: 242 QSRQ 245
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 108 bits (272), Expect = 1e-27
Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 5/152 (3%)
Query: 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89
+ + A IP H A IMDGN R+AK+ GH+ G ++ +++C E G++ +T+
Sbjct: 5 IQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTL 64
Query: 90 YAFSIDNFQRKPAEVQNLMDLLLEKI-NELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVA 148
+AFS +N+ R EV LM+L L+ + E+ K GIRV FIG+ LS ++
Sbjct: 65 FAFSSENWLRPADEVSALMELFLKALDREVDKLHR----NGIRVRFIGDRSRLSPKLQER 120
Query: 149 AEEVMMATARNSKVVLLVCLAYTSADEIVHAV 180
E TA N++++L + ++Y +IV A
Sbjct: 121 MEYAERLTASNTRLILSLAVSYGGRWDIVTAA 152
Score = 60.5 bits (147), Expect = 2e-10
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIG 343
I+ + +H+ +A P+PD+ +R+SGE R+SNFLLWQ + L LWP+
Sbjct: 169 IDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFD 222
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 108 bits (271), Expect = 3e-27
Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 30 LFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTI 89
L R + G +P H I+DGNRR+A+ L ++ GH+ G VL++C ELG+ VTI
Sbjct: 32 LEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTI 91
Query: 90 YAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAA 149
+ FS DNF R PAEV+ LM+L + + + I + +RV IG V A
Sbjct: 92 WVFSTDNFSRSPAEVETLMNLFEREARRMAVDPRI-HANRVRVRAIGRHDGFPPKVLEAL 150
Query: 150 EEVMMATARNSKVVLLVCLAYTSADEIVHAVQ 181
EE+ T + ++L + + Y +EIV AV+
Sbjct: 151 EELEERTEGHEGMLLNIAVGYGGREEIVDAVK 182
Score = 55.6 bits (134), Expect = 9e-09
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLK 353
+ H+Y A PDPD ++R+SGE RLS FLLWQ++ WP + A+
Sbjct: 206 HISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRD 265
Query: 354 FQ 355
+Q
Sbjct: 266 YQ 267
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 105 bits (264), Expect = 2e-26
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+AK+ + GH+ G +L +L+ C + G+ +T YAFS +N+
Sbjct: 20 LPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWS 79
Query: 99 RKPAEVQNLMDL----LLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMM 154
R EV LM L L ++ EL++E +R+ F+G+L L + ++
Sbjct: 80 RPLEEVNFLMTLFERVLRRELEELMEEN-------VRIRFVGDLDPLPKSLQEEISRSTE 132
Query: 155 ATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVIN 205
T N+ + VC Y EIV A + A QV G ++
Sbjct: 133 LTKNNNGIHFNVCTNYGGRQEIVQAARAI------------AQQVQQGELD 171
Score = 61.1 bits (149), Expect = 1e-10
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 290 INLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVW 349
I+ E +Y A DPD+L+R+SGE R+SNFLLWQ + + LWP+
Sbjct: 175 IDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHK 234
Query: 350 AVLKFQ-RNHSF 360
A+L +Q R F
Sbjct: 235 ALLDYQSRERRF 246
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 102 bits (256), Expect = 1e-25
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 5/164 (3%)
Query: 40 PHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQR 99
H A IMDGN R+AK AGHK+G +L + +C ++ +T+YAFS +N++R
Sbjct: 5 LKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKR 64
Query: 100 KPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARN 159
+EV LM LL+K L E+S IR IG+L+ S+ +R ++ T
Sbjct: 65 PKSEVDFLMK-LLKKY--LKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSF 121
Query: 160 SKVVLLVCLAYTSADEIVHAVQESFKNKS--DESLAVNANQVSN 201
++ L Y S DEI A ++ ++ L ++SN
Sbjct: 122 KGFTQVLALNYGSKDEISRAFKKLLESPPSHIGELESLEEEISN 165
Score = 49.0 bits (117), Expect = 1e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 302 AVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPE 341
A P+ D+L+R+ GE RLSNFLLWQ+S L LWP+
Sbjct: 170 ADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPD 209
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 102 bits (255), Expect = 3e-25
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A IMDGN R+AK + AGH+ G +L V++ ELG+ Y+T++AFS +N+
Sbjct: 14 VPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWS 73
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLY--GIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
R +EV +L LL I + + L+ G+RV IG L + E T
Sbjct: 74 RPASEVSDLFGLLRLFI-----RRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELT 128
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQE 182
N+ + L++ Y S DEI AV+
Sbjct: 129 RNNTGLNLVIAFNYGSRDEIARAVRR 154
Score = 55.1 bits (133), Expect = 1e-08
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ ++ A PDPD+++R+SGE RLSNFLLWQ + L WP+ L A+ ++
Sbjct: 174 ISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEY 233
Query: 355 QR 356
R
Sbjct: 234 AR 235
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 102 bits (255), Expect = 3e-25
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 3/144 (2%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+A + AGH++G +L +L+ C + G+K +T YAFS +N+Q
Sbjct: 18 IPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQ 77
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM LL E++ L +E + ++ G+R+ FIG+L L + ++ E M T
Sbjct: 78 RPIEEVDFLM-LLFERL--LRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLN 134
Query: 159 NSKVVLLVCLAYTSADEIVHAVQE 182
N + V + Y S +EI A ++
Sbjct: 135 NQAIHFTVAVNYGSRNEITRACRQ 158
Score = 67.3 bits (164), Expect = 7e-13
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 256 VSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSG 315
V+ +Y S + RA R V E ++ + + +N VE+H+Y A P PD+L+R+SG
Sbjct: 142 VAVNYGSRNEITRACR---QVAELVQQGKLSADAVNEQLVEQHLYTADTPPPDLLIRTSG 198
Query: 316 ETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ-RNHSFLEKKKKQ 367
E RLSNFLLWQ + + LWP+ A+L +Q R+ F + K
Sbjct: 199 EMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQVKALI 251
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
Provisional.
Length = 322
Score = 101 bits (252), Expect = 3e-24
Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 54/320 (16%)
Query: 42 HFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP 101
H + IMDGNRR+AK+ + GH G +LI +++ C +L +K +++++FS+ N+ R P
Sbjct: 22 HISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSP 81
Query: 102 AEVQNLMDL-LLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNS 160
E+ L L LL INE + I + I++ IGNL ++++ R ++ T
Sbjct: 82 EEIHFLFYLNLLILINEDFFFKFIKD-NKIKIKIIGNLSYINDAYRKIIHDIEEKTENFD 140
Query: 161 KVVLLVCLAYTSADEIV------HAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIY 214
++L + +YTS +E+ + +++KN +E + + + I K
Sbjct: 141 NILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEKKILCGSNILTDPI-------KEG 193
Query: 215 SLTVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGN 274
+ +P E+ C + N ER+ +G +C +
Sbjct: 194 TFAIPDDEDECDYLDHELEN---ERIDLDLKFDGDCICGEKSF----------------- 233
Query: 275 GVTEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDS 334
E+Q I +V+ K + + P P+IL+R+SGE RLS+F+L+Q S
Sbjct: 234 -----LNEEQ-----IEIVNYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISE----- 278
Query: 335 PAALWPEIGLWHLVWAVLKF 354
+ EI + W + F
Sbjct: 279 ----FTEIYFINEYWPIFNF 294
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 242
Score = 98.8 bits (246), Expect = 4e-24
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AK+ E GH+ G ++ + + LGVK++T+Y FS +N+
Sbjct: 10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWN 69
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV LM LLL+ I E+ IR IG++ L E V+ E TA+
Sbjct: 70 RPSDEVAALMSLLLDSI-----EEETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAK 124
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVIN 205
N+ + L++ L+Y+S EI A ++ + L +++ I+
Sbjct: 125 NTGMCLVLALSYSSRWEITEATRQIATLVQNGELNP--EEITEESIS 169
Score = 52.2 bits (125), Expect = 9e-08
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKF 354
+ +H+ PDPD+L+R+ GE RLSN+LLWQ + L WP+ L A+ +
Sbjct: 168 ISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDY 227
Query: 355 QRNHSFLEKKKKQL 368
Q+ K +Q+
Sbjct: 228 QKRERRFGKTSEQI 241
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 243
Score = 96.8 bits (241), Expect = 2e-23
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P H A +MDGN R+A + ++ GHK G L V+ E GV Y+++Y FS +N++
Sbjct: 14 LPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWK 73
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R P EV+ LM + I+ + + ++ +G+RV + G L + V E T
Sbjct: 74 RSPDEVRFLMGFSRDVIH---RRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKN 130
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYS 215
N+ + L+ C+ Y EI A A +V +G I+G EK+ S
Sbjct: 131 NTTMDLVFCVNYGGRAEIADAAAAI------------AREVRDGKISGDRVTEKMIS 175
Score = 55.2 bits (133), Expect = 1e-08
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIG---LW 345
+ H+Y PD D+ +R+SGE R SNFLLWQ++ LD L+P+ G LW
Sbjct: 174 ISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLW 227
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 241
Score = 96.2 bits (239), Expect = 5e-23
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+A+ + GH+EG +++ ++ E G+K +++YAFS +N++
Sbjct: 8 IPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWK 67
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R E++++ LL+E I L ++ GIR++ G+ K L+ V + M T +
Sbjct: 68 RPITEIRSIFGLLVEFIETRL---DTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKK 124
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESF--KNKSDESL 192
N + + CL Y S DE++ A QE F + +L
Sbjct: 125 NKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTL 160
Score = 57.3 bits (138), Expect = 2e-09
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 294 DVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLK 353
+ EK +Y + P D+L+R++GE RLSNFLLWQ++ L LWP+ LV ++
Sbjct: 168 EFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKW 227
Query: 354 FQ-RNHSF 360
++ R F
Sbjct: 228 YETRTRKF 235
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 95.4 bits (237), Expect = 6e-23
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
IP H A IMDGN R+AKK + GH+ G L + +K+ ELG+KY+T ++FS +N++
Sbjct: 3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
R EV+ LMDL ++ I+ +E ++ +RV +G + L E V +EV T
Sbjct: 63 RPKEEVEFLMDLFVQMID---REMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKE 119
Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDE 190
++ L++ Y EI+ AV+ K+ S
Sbjct: 120 FDRMTLVIAFNYGGRREILDAVESILKDVSQG 151
Score = 56.2 bits (135), Expect = 4e-09
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 283 KQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEI 342
QG + +++Y+ PDPD+++R+SGE RLSNFLLWQ++ L LWP+
Sbjct: 149 SQGKKIELTEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDF 208
Query: 343 GLWHLVWAVLKFQR 356
+ A+ + +
Sbjct: 209 TKRDFLRAIESYSK 222
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 250
Score = 93.8 bits (233), Expect = 4e-22
Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 9/171 (5%)
Query: 38 PIPHHFAFIMDGNRRYAKKLNVEEG----AGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93
+P H A IMDGNRR+ +K +GH G SL ++ LG++ +T++AFS
Sbjct: 17 SLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76
Query: 94 IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVM 153
+NF R EV L L +++ L ++ IR+ IG+L L + ++ E+
Sbjct: 77 TENFSRSKEEVAELFSLFNSQLDSQL---PYLHENEIRLRCIGDLSKLPQELQNNIEQAS 133
Query: 154 MATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVI 204
ATA S++ L++ + Y DE+V A ++ ++ +++ ++ + +S +I
Sbjct: 134 SATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISS--DDISEELI 182
Score = 55.2 bits (133), Expect = 9e-09
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQ 355
PDPD+L+R+ GE R+SNFLLWQ + L LWP+ L+ A+ +Q
Sbjct: 192 PDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQ 242
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 256
Score = 92.5 bits (230), Expect = 1e-21
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 25 FMRRCLFRVLAVGPIPHHFAFIMDGNRRYAKKLNVEE-GAGHKEGFSSLISVLKYCYELG 83
+ RR L L +P H I+DGNRR+A+K + GH+ G + + L +C E
Sbjct: 13 YARR-LLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETD 71
Query: 84 VKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSE 143
V VT+Y S DN R E+ L+D++ + + +L + RV +G+L L
Sbjct: 72 VNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDGR------WRVRHVGSLDLLPA 125
Query: 144 PVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAV 194
P +E AT N + + V + Y EIV AV+ D+ ++
Sbjct: 126 PSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSI 176
Score = 56.7 bits (137), Expect = 3e-09
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 243 TEDINGATVCTDGVSCDYKSEAQALRAGRIGNGVTEGFEEKQGNNPIINLVDVE---KHM 299
T +G V V+ Y + + A R + +TE ++ + + V V+ H+
Sbjct: 138 TVGNDGIKV---NVAVGYGGRQEIVDAVR--SLLTEHKDKGTSIDELAESVTVDAISTHL 192
Query: 300 YMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWP 340
Y PDPD+++R+SGE RLS F+LWQ+++ WP
Sbjct: 193 YTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWP 233
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 230
Score = 86.4 bits (214), Expect = 1e-19
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 37 GPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDN 96
+P H IMDGNRR+A K + GHKEG ++K+ +LG+KY+++Y FS +N
Sbjct: 4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTEN 63
Query: 97 FQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMAT 156
+ R +E+++LM L+ + L E + I++ G+++ LSE V+ + ++ + T
Sbjct: 64 WNRTDSEIEHLMFLI---ADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSD-ESLAVNANQVSN 201
+VL + + Y +EIV AV++ + D E+L N N S
Sbjct: 121 KNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLETL--NENVFSK 164
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 305 PDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPE 341
PD D+L+R+ G+ R+SNFLLW+ + C LWPE
Sbjct: 172 PDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPE 208
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 239
Score = 85.2 bits (211), Expect = 4e-19
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 9/141 (6%)
Query: 42 HFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKP 101
H A IMDGN R+A + AGH+ G ++ V++ +LG+ +T+YAFS DN++R
Sbjct: 12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPA 71
Query: 102 AEVQNLMDLL---LEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
AEV LM LL L E L G+R+ IG L + + A ATA
Sbjct: 72 AEVGGLMRLLRAYLRNETERLARN------GVRLTVIGRRDRLPDGIPEAIARAEAATAG 125
Query: 159 NSKVVLLVCLAYTSADEIVHA 179
++ L + + Y++ D I+ A
Sbjct: 126 GDRLHLRIAVDYSARDAILAA 146
Score = 48.6 bits (116), Expect = 2e-06
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 256 VSCDYKSEAQALRAGRIGNGVT----EGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILM 311
++ DY + L A G E F + D D+L+
Sbjct: 133 IAVDYSARDAILAAAAKALGPEGLSREAFSDLLT----------------GDGGDVDLLI 176
Query: 312 RSSGETRLSNFLLWQTSNCLLDSPAALWPEIGLWHLVWAVLKFQR 356
R+ GE RLS+FLLW+++ L +WP+ G L AV F
Sbjct: 177 RTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHG 221
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 81.2 bits (200), Expect = 3e-17
Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Query: 39 IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
+P+H A +MDGN R+A + + GHK G + +I + ELG+K++++YAFS +N++
Sbjct: 67 LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWK 126
Query: 99 RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPV--RVAAEEVMMAT 156
R P EV+ LM + + + + +N G+R+ ++G+ L V +A E M T
Sbjct: 127 RSPEEVRFLMGFNRDVVR---RRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEM--T 181
Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQE 182
N + + C+ Y EI A +E
Sbjct: 182 KSNDVITINYCVNYGGRTEITEATRE 207
Score = 47.3 bits (112), Expect = 5e-06
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 295 VEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWPE 341
+ +H+ PD D+ +R+SGE R SNF+LWQ + LWP+
Sbjct: 227 IARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPD 273
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 229
Score = 59.2 bits (143), Expect = 4e-10
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 47 MDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPAEVQN 106
MDGN R+AKK GHK G S+ + + G++ +T+YAFS +N+ R EV
Sbjct: 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60
Query: 107 LMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATARNSKVVLLV 166
LM+L + ++ +K ++ + +R+ IG+ + ++ + TA N+ + L +
Sbjct: 61 LMELFVWALDSEVKS---LHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNI 117
Query: 167 CLAYTSADEIVHAVQ 181
Y +IV V+
Sbjct: 118 AANYGGRWDIVQGVR 132
Score = 39.6 bits (92), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 308 DILMRSSGETRLSNFLLWQTSNCLLDSPAALWPE 341
D+++R+ GE R+SNFLLWQ + L LWP+
Sbjct: 166 DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPD 199
>gnl|CDD|176987 CHL00046, atpI, ATP synthase CF0 A subunit.
Length = 228
Score = 31.8 bits (73), Expect = 0.38
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 96 NFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLS 142
N Q P QN + +LE I +L K Q Y V FIG + FL
Sbjct: 46 NLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRPWVPFIGTM-FLF 91
>gnl|CDD|224790 COG1878, COG1878, Kynurenine formamidase [Amino acid transport and
metabolism].
Length = 218
Score = 31.1 bits (71), Expect = 0.75
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 76 LKYCYELGVKYVTIYAFSIDNFQRKPAEVQNLM----DLLLEKINELLKEQSIVNLYGIR 131
+Y E GVK V I S D + L+ L++E + L K G
Sbjct: 138 AEYLIERGVKAVGIDTPSTDPGLSEDFPAHRLLLSAGILIVENLTNLDK-----LPAGGA 192
Query: 132 VYFIG-NLKFL---SEPVRVAAEEV 152
F+ LK PVRV A
Sbjct: 193 YLFLALPLKIKGGDGSPVRVLALVE 217
>gnl|CDD|106738 PRK13797, PRK13797, putative bifunctional allantoicase/OHCU
decarboxylase; Provisional.
Length = 516
Score = 31.1 bits (70), Expect = 0.99
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 142 SEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQ 198
+E VR A A + LV A A+E++ ++ + ++ L + A Q
Sbjct: 444 AEDVRAAFARGNAAYEERFGFIFLVRAAGRGAEEMLELLRARLAHDPEQELRIAAGQ 500
>gnl|CDD|235519 PRK05588, PRK05588, histidinol-phosphatase; Provisional.
Length = 255
Score = 30.0 bits (68), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 64 GHKEGFSSLISVLKYCYELGVKYVTI 89
K +L+ + K YELG KY+T+
Sbjct: 190 DDKRSVENLVKIYKRFYELGGKYITL 215
>gnl|CDD|234888 PRK01022, PRK01022, hypothetical protein; Provisional.
Length = 167
Score = 29.1 bits (66), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 111 LLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMM 154
L EK+ E E SI +L RV+ ++K+L E R E
Sbjct: 9 LGEKLKEEALEYSIYDLMKARVFLEKDIKYLPEKYREKYIESFF 52
>gnl|CDD|184333 PRK13798, PRK13798, putative OHCU decarboxylase; Provisional.
Length = 166
Score = 29.2 bits (66), Expect = 2.4
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 145 VRVAAEEVMMATARNSKV-------VLLVCLAYTSADEIVHAVQESFKNKSDESLAVNAN 197
V A E VM A A ++ V L+C SADE++ A+Q+ N + V
Sbjct: 90 VADADEAVMAALAAGNRAYEEKFGFVFLICATGRSADEMLAALQQRLHNDPETERKVVRE 149
Query: 198 Q 198
+
Sbjct: 150 E 150
>gnl|CDD|220457 pfam09888, DUF2115, Uncharacterized protein conserved in archaea
(DUF2115). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 162
Score = 29.2 bits (66), Expect = 2.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 111 LLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMM 154
LL+ + E +E S+ +L RV ++K+L E R E
Sbjct: 6 LLKILKEEAREYSVYDLMKARVRLEKDIKYLPEDYRKKYIESFF 49
>gnl|CDD|151996 pfam11560, LAP2alpha, Lamina-associated polypeptide 2 alpha. LAPs
are components of the nuclear lamina which supports the
nuclear envelope.LAP2alpha is a non-membrane-associated
member of the LAP family which is unique. This family of
proteins is the C terminal domain of LAP2alpha which
consists of residues 459-693 and constitutes a dimeric
structure with an antiparallel coiled coil. LAP2alpha is
involved in cell-cycle regulation and chromatin
organisation and preferentially binds to lamin A/C.
Length = 235
Score = 29.3 bits (65), Expect = 2.9
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 138 LKFLSEPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVH-AVQESFKNKSDESLAVNA 196
L F+SE AA + + + + L +C AY +A + A +F K+ ++ A
Sbjct: 82 LGFISEATPAAAIQAASTESCDKHLDLALCRAYEAAASALQIAAHTAFVAKALQADISQA 141
Query: 197 NQVSNGVINGAEKVEKIYSLTVPSIEESCKEKASRVCNGAIERVK 241
Q+ N + A + I + T + AS +C+ A + VK
Sbjct: 142 AQIINSDPSDAHQALGILNKTY--------DAASYICDAAFDEVK 178
>gnl|CDD|184695 PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 28.6 bits (64), Expect = 3.7
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 149 AEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAE 208
+E M+A A+ A D+++ + S +++ + ++A NQV+N + AE
Sbjct: 86 IKEKMIADAKEE--------AQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAE 137
Query: 209 KV 210
KV
Sbjct: 138 KV 139
>gnl|CDD|222753 pfam14436, EndoU_bacteria, Bacterial EndoU nuclease. This is a
bacterial verion of EndoU nuclease. It is found at
C-terminal region of polymorphic toxin proteins.
Length = 126
Score = 28.1 bits (63), Expect = 4.0
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 172 SADEIVHAVQESFKNKSDESLAVNANQVSNGVING 206
S ++I+ A++E++KNK + + + G +G
Sbjct: 74 SDEKILDAIKEAYKNKK--NKPSDGGKWEGGTSDG 106
>gnl|CDD|222156 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family.
This family of presumed lipases and related enzymes are
similar to pfam00657.
Length = 174
Score = 28.2 bits (63), Expect = 4.8
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 16/99 (16%)
Query: 6 DAGGAAATTPTQLLESLGSFMRRCL--FRVLAVGPIPHHFAFIMDGNRRYAKKLNVEEGA 63
D G +L + +R VL VGP P LN
Sbjct: 73 DLGSGTDADLAAYEAALEAILRAARPAGPVLLVGPPPVLPEASPPLLNDRLAALNEA--- 129
Query: 64 GHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQRKPA 102
+ + GV +V + A D+ P
Sbjct: 130 -----------LREVAARYGVPFVDLAAALRDHEGWLPD 157
>gnl|CDD|188295 TIGR03180, UraD_2, OHCU decarboxylase. Previously thought to only
proceed spontaneously, the decarboxylation of
2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU)
has been recently been shown to be catalyzed by this
enzyme in Mus musculus. Homologs of this enzyme are
found adjacent to and fused with uricase in a number of
prokaryotes and are represented by this model. This
model is a separate (but related) clade from that
represented by TIGR3164. This model places a second
homolog in streptomyces species which (are not in the
vicinity of other urate catabolism associated genes)
below the trusted cutoff.
Length = 158
Score = 27.4 bits (61), Expect = 9.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 143 EPVRVAAEEVMMATARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQ 198
E R A E A + L+ A SA+E++ A+Q +N +E L + A Q
Sbjct: 90 EETRAALLEGNAAYEEKFGRIFLIRAAGRSAEEMLDALQARLQNDPEEELRIAAEQ 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,638,194
Number of extensions: 1809008
Number of successful extensions: 1696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 67
Length of query: 368
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 270
Effective length of database: 6,590,910
Effective search space: 1779545700
Effective search space used: 1779545700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)