RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017611
         (368 letters)



>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score =  116 bits (290), Expect = 4e-31
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 39  IPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFSIDNFQ 98
              H A IMDGN R+AKK       GHK G  S+   + +    G++ +T+YAFS +N+ 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 99  RKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVMMATAR 158
           R   EV  LM+     +  L  E   ++ + +R+  IG+    +  ++    +    TA 
Sbjct: 65  RPAQEVSALME---LFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAG 121

Query: 159 NSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSN 201
           N+ + L +   Y    +IV  V++  +     +L  +      
Sbjct: 122 NTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEM 164



 Score = 76.7 bits (188), Expect = 6e-17
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 281 EEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPAALWP 340
           ++       I+   + +H+ M      D+++R+ GE R+SNFLLWQ +   L     LWP
Sbjct: 151 QQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWP 210

Query: 341 EIGLWHLVWAVLKFQR 356
           +        A+  F  
Sbjct: 211 DFDEQDFEGALNAFAN 226


>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score =  107 bits (268), Expect = 5e-28
 Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 34  LAVGPIPHHFAFIMDGNRRYAKKLNVEEGAGHKEGFSSLISVLKYCYELGVKYVTIYAFS 93
           +    IP H A IMDGN R+AK+  +    GH EG  ++  + +Y  +LGVKY+T+YAFS
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61

Query: 94  IDNFQRKPAEVQNLMDLLLEKINELLKEQSIVNLYGIRVYFIGNLKFLSEPVRVAAEEVM 153
            +N+ R   EV  LM L  + +N  L E        ++V  IG +  L +  + A  E  
Sbjct: 62  TENWSRPKDEVNYLMKLPGDFLNTFLPELIE---KNVKVETIGFIDDLPDHTKKAVLEAK 118

Query: 154 MATARNSKVVLLVCLAYTSADEIVHAVQESFKN 186
             T  N+ + L+  L Y    EI+ AVQ   + 
Sbjct: 119 EKTKHNTGLTLVFALNYGGRKEIISAVQLIAER 151



 Score = 87.2 bits (215), Expect = 1e-20
 Identities = 29/200 (14%), Positives = 69/200 (34%), Gaps = 8/200 (4%)

Query: 157 ARNSKVVLLVCLAYTSADEIVHAVQESFKNKSDESLAVNANQVSNGVINGAEKVEKIYSL 216
            +  + +             ++A      ++  + +        + +     ++ +    
Sbjct: 37  MQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVK 96

Query: 217 TVPSIEESCKEKASRVCNGAIERVKGTEDINGATVCTDGVSCDYKSEAQALRAGRIGNGV 276
                        ++      +    T+   G T+     + +Y    +          +
Sbjct: 97  VETIGFIDDLPDHTKKAVLEAKEK--TKHNTGLTLV---FALNYGGRKEI---ISAVQLI 148

Query: 277 TEGFEEKQGNNPIINLVDVEKHMYMAVAPDPDILMRSSGETRLSNFLLWQTSNCLLDSPA 336
            E ++  + +   I+     ++++ A  PDP++L+R+SGE RLSNFL+WQ S        
Sbjct: 149 AERYKSGEISLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFID 208

Query: 337 ALWPEIGLWHLVWAVLKFQR 356
             WP+     L   +  +Q 
Sbjct: 209 EFWPDFNEESLAQCISIYQN 228


>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 120

 Score = 26.0 bits (57), Expect = 4.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 106 NLMDLLLEKINELLKEQSIVNLY 128
            L  LL EKI E L+E+ + + Y
Sbjct: 16  GLTSLLSEKIKEFLQEKKMQSFY 38


>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
           Thermophilus [TaxId: 271]}
          Length = 387

 Score = 26.5 bits (58), Expect = 6.1
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 81  ELGVKYVTIYAFSIDNFQRKPAEVQNLMDLLLEKINE--LLKEQSIVNLYGIRVYFIGNL 138
           ELG   V ++   +      P E   ++    + ++E  L       NL+    +  G  
Sbjct: 44  ELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAF 103

Query: 139 KFLSEPVRV-AAEEVMMAT 156
                 VR  A  + +   
Sbjct: 104 TSPDPWVRAYALRKSLETM 122


>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId:
           9940]}
          Length = 164

 Score = 25.1 bits (55), Expect = 9.8
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 316 ETRLSNFL--LWQTSN----CLLDSPAALWPEIGLWHLVWAVLK-FQRNHSFLEKKK 365
            T L      L Q  +    C          E+G    +  V K FQ  + +L++K 
Sbjct: 79  TTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIYDYLQEKG 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,571
Number of extensions: 62349
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 12
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)