Your job contains 1 sequence.
>017612
MLVNIIKSPPSRQPFPPPLPNSFTANLKNGRNLMENEEQNNESAKAQPPQNKKKTIITIP
SYQEVINATNPPQNLFTPSQSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQ
NVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALY
LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGS
LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSVNE
VTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKNRSSQVGETSVSNSGTEN
SNSGQPDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017612
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2096329 - symbol:ERCC1 species:3702 "Arabidops... 593 5.7e-86 2
UNIPROTKB|Q9QYP5 - symbol:ERCC1 "ERCC1 protein" species:1... 302 1.5e-45 3
MGI|MGI:95412 - symbol:Ercc1 "excision repair cross-compl... 296 4.0e-45 3
UNIPROTKB|P07992 - symbol:ERCC1 "DNA excision repair prot... 302 1.1e-42 2
UNIPROTKB|Q1LZ75 - symbol:ERCC1 "DNA excision repair prot... 305 1.8e-42 2
UNIPROTKB|Q6UIQ5 - symbol:ERCC1 "Excision repair protein"... 298 2.8e-42 2
ZFIN|ZDB-GENE-040426-2606 - symbol:ercc1 "excision repair... 293 1.1e-40 2
RGD|1306992 - symbol:Ercc1 "excision repair cross-complem... 297 2.2e-40 2
UNIPROTKB|B3KRR0 - symbol:ERCC1 "cDNA FLJ34720 fis, clone... 302 1.5e-39 2
UNIPROTKB|F1PPD0 - symbol:ERCC1 "Uncharacterized protein"... 263 2.2e-38 2
UNIPROTKB|K7ES46 - symbol:ERCC1 "DNA excision repair prot... 252 2.7e-34 2
UNIPROTKB|K7EP14 - symbol:ERCC1 "DNA excision repair prot... 184 4.5e-28 2
ASPGD|ASPL0000074569 - symbol:AN4331 species:162425 "Emer... 154 1.5e-19 2
GENEDB_PFALCIPARUM|PFB0160w - symbol:PFB0160w "ERCC1 nucl... 163 7.6e-19 2
UNIPROTKB|O96136 - symbol:PFB0160w "ERCC1 nucleotide exci... 163 7.6e-19 2
POMBASE|SPBC4F6.15c - symbol:swi10 "DNA repair endonuclea... 210 4.1e-17 1
FB|FBgn0028434 - symbol:Ercc1 "Ercc1" species:7227 "Droso... 210 4.1e-17 1
UNIPROTKB|K7EJW9 - symbol:ERCC1 "DNA excision repair prot... 113 2.5e-12 2
UNIPROTKB|K7ER60 - symbol:ERCC1 "DNA excision repair prot... 166 4.6e-12 1
UNIPROTKB|I3LFQ1 - symbol:ERCC1 "Uncharacterized protein"... 161 1.7e-11 1
UNIPROTKB|K7EK97 - symbol:ERCC1 "DNA excision repair prot... 158 3.7e-11 1
UNIPROTKB|K7ER89 - symbol:ERCC1 "DNA excision repair prot... 166 3.7e-11 1
WB|WBGene00008665 - symbol:ercc-1 species:6239 "Caenorhab... 110 1.8e-10 2
DICTYBASE|DDB_G0267682 - symbol:ercc1 "DNA excision repai... 158 1.9e-08 2
CGD|CAL0001589 - symbol:RAD10 species:5476 "Candida albic... 135 2.1e-06 1
UNIPROTKB|Q5AA15 - symbol:RAD10 "Putative uncharacterized... 135 2.1e-06 1
>TAIR|locus:2096329 [details] [associations]
symbol:ERCC1 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=ISS] [GO:0010332 "response to gamma radiation"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0006294
"nucleotide-excision repair, preincision complex assembly"
evidence=IMP] [GO:0017108 "5'-flap endonuclease activity"
evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0010213 "non-photoreactive DNA repair"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IMP]
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 GO:GO:0010332 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0000724 GO:GO:0010224 EMBL:AC009177 GO:GO:0017108
InterPro:IPR010994 SUPFAM:SSF47781 EMBL:AF276082 EMBL:AY050335
EMBL:AY116935 EMBL:AY088915 IPI:IPI00546398 RefSeq:NP_187172.1
UniGene:At.15981 ProteinModelPortal:Q9MA98 SMR:Q9MA98 IntAct:Q9MA98
STRING:Q9MA98 PaxDb:Q9MA98 PRIDE:Q9MA98 EnsemblPlants:AT3G05210.1
GeneID:819685 KEGG:ath:AT3G05210 GeneFarm:4450 TAIR:At3g05210
eggNOG:COG5241 HOGENOM:HOG000037440 InParanoid:Q9MA98 KO:K10849
OMA:CHVDVED PhylomeDB:Q9MA98 ProtClustDB:CLSN2684472
Genevestigator:Q9MA98 GermOnline:AT3G05210 GO:GO:0010213
GO:GO:0006294 TIGRFAMs:TIGR00597 Uniprot:Q9MA98
Length = 410
Score = 593 (213.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 118/194 (60%), Positives = 141/194 (72%)
Query: 175 NSCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ C L S+ EC RYLETIKVYENKPADLIQGQMDTDYLSRL H+LTS+R VNK+DVV
Sbjct: 217 HDCTLLCAWSMTECARYLETIKVYENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVV 276
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHP-----PIPET 287
TLGSTFGSL+HI+DASMEDLARCPGIGERKVKRLYDTFHEPFKR SS+P PIPE
Sbjct: 277 TLGSTFGSLAHIIDASMEDLARCPGIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEA 336
Query: 288 PSQKDVERSSXXXXXXXXXXXXXXXKRRKKETESTVKSALSAAFAKYADKIGKKKNRSSQ 347
P +KDV K+++ E E TVK+ALSA FA+Y+D++ KKK + +
Sbjct: 337 PVEKDVNSEEPVEEDEDFVEDSRKRKKKEPEPEKTVKTALSAVFARYSDRLSKKKEKQKE 396
Query: 348 VGETSVSNSGTENS 361
T+ S++ T +
Sbjct: 397 KDTTTASDAETHQN 410
Score = 286 (105.7 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 68/165 (41%), Positives = 89/165 (53%)
Query: 35 ENEEQNNESAKAQPPQNKKKT--IITIPSYQEVINAT---NPPQNLFTPSQSFSQAFSFI 89
E+++ + Q K KT +I +PSYQEV+ ++ + P +LF PSQSFSQAF+F+
Sbjct: 4 EDDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAFAFV 63
Query: 90 KSSEFYX-----XXXXXXXXXXXXXXXXXLSQGGEQNVGTXXXXXXXXX------XXXXR 138
KSS+ Y S Q G R
Sbjct: 64 KSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTTQNR 123
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
NAILVS RQKGNPLLK+IRNV+W F+D++ DY++GQNSCALYLSL
Sbjct: 124 NAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSL 168
>UNIPROTKB|Q9QYP5 [details] [associations]
symbol:ERCC1 "ERCC1 protein" species:10029 "Cricetulus
griseus" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0006312 "mitotic
recombination" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0006979 GO:GO:0003684
GO:GO:0003697 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0008022
GO:GO:0004519 GO:GO:0000784 GO:GO:0006312 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0000109 TIGRFAMs:TIGR00597 CTD:2067
HOVERGEN:HBG051497 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
EMBL:AB008427 RefSeq:NP_001233733.1 ProteinModelPortal:Q9QYP5
SMR:Q9QYP5 GeneID:100689377 Uniprot:Q9QYP5
Length = 293
Score = 302 (111.4 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 59/103 (57%), Positives = 75/103 (72%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD TL
Sbjct: 189 CTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTL 248
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 249 LATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHEPFLKV 291
Score = 161 (61.7 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+ILVS RQ+GNP+LK++RNV W F +V DY++GQ++CAL+LSL
Sbjct: 94 NSILVSPRQRGNPVLKFVRNVPWEFGEVTPDYVLGQSTCALFLSL 138
Score = 43 (20.2 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 42 ESAKAQPPQNKKKTIITIPSYQEVINATNPPQNLFTPSQSFS 83
E A AQPP T P+ E + NP Q + T ++S S
Sbjct: 57 EYAIAQPPGGAGPTG---PTGSEPVKGENPGQTVKTGAKSNS 95
>MGI|MGI:95412 [details] [associations]
symbol:Ercc1 "excision repair cross-complementing rodent
repair deficiency, complementation group 1" species:10090 "Mus
musculus" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISO] [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IMP] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISO] [GO:0001094
"TFIID-class transcription factor binding" evidence=IDA]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005669 "transcription factor TFIID complex" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=ISO;IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=ISO;IMP] [GO:0006312 "mitotic recombination" evidence=ISO]
[GO:0006949 "syncytium formation" evidence=IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=ISO] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008584 "male gonad development" evidence=IMP] [GO:0009650 "UV
protection" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0010259 "multicellular organismal aging"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017025 "TBP-class protein binding" evidence=IPI] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISO]
[GO:0035166 "post-embryonic hemopoiesis" evidence=IMP] [GO:0035264
"multicellular organism growth" evidence=IGI;IMP] [GO:0043066
"negative regulation of apoptotic process" evidence=IMP]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0048468 "cell
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP]
InterPro:IPR000445 InterPro:IPR003583 InterPro:IPR004579
Pfam:PF00633 Pfam:PF03834 ProDom:PD013585 SMART:SM00278
MGI:MGI:95412 GO:GO:0043066 GO:GO:0003684 GO:GO:0008283
GO:GO:0048477 GO:GO:0007283 GO:GO:0001302 GO:GO:0008584
GO:GO:0007281 GO:GO:0006302 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0035264 GO:GO:0001094 GO:GO:0004519
GO:GO:0045190 GO:GO:0010165 GO:GO:0051276 GO:GO:0010259
GO:GO:0009650 GO:GO:0006949 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 GO:GO:0005669 eggNOG:COG5241 HOGENOM:HOG000037440
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 OMA:HPDYIHQ OrthoDB:EOG4R23VJ GO:GO:0035166
GO:GO:0000720 ChiTaRS:ERCC1 EMBL:X07414 EMBL:X07413 EMBL:AK088271
EMBL:AK136733 EMBL:AC148988 EMBL:CH466639 EMBL:BC011224
IPI:IPI00133914 IPI:IPI00895992 PIR:S01202 RefSeq:NP_001120796.1
RefSeq:NP_031974.2 UniGene:Mm.280913 ProteinModelPortal:P07903
STRING:P07903 PhosphoSite:P07903 PaxDb:P07903 PRIDE:P07903
Ensembl:ENSMUST00000003645 GeneID:13870 KEGG:mmu:13870
InParanoid:P07903 NextBio:284784 Genevestigator:P07903
GermOnline:ENSMUSG00000003549 Uniprot:P07903
Length = 298
Score = 296 (109.3 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
Identities = 58/103 (56%), Positives = 74/103 (71%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD TL
Sbjct: 194 CTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL + AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 254 LATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
Score = 162 (62.1 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F +V+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSL 143
Score = 44 (20.5 bits), Expect = 4.0e-45, Sum P(3) = 4.0e-45
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 42 ESAKAQPPQNKKKTIITIPSYQEVINATNPPQNLFTPSQSFS 83
E A QPP T+ P+ E NP Q L T ++S S
Sbjct: 62 EYAITQPPGGAGATV---PTGSEPAAGENPSQTLKTGAKSNS 100
>UNIPROTKB|P07992 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IEA] [GO:0001302 "replicative
cell aging" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006949 "syncytium formation" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007584 "response to nutrient"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008584 "male gonad development" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0009744 "response to sucrose
stimulus" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0035166 "post-embryonic hemopoiesis"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0048477 "oogenesis" evidence=IEA] [GO:0048568
"embryonic organ development" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0000784 "nuclear chromosome,
telomeric region" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0032205 "negative regulation of telomere
maintenance" evidence=IMP] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=IMP] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IMP] [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IDA] [GO:0000109 "nucleotide-excision repair complex"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0019904 "protein domain specific binding" evidence=IPI]
[GO:0006289 "nucleotide-excision repair" evidence=IGI;IDA;TAS]
[GO:0006310 "DNA recombination" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_216 InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0005737 GO:GO:0043066
GO:GO:0005654 GO:GO:0006979 GO:GO:0003684 GO:GO:0008283
GO:GO:0009744 GO:GO:0007584 GO:GO:0048477 EMBL:CH471126
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0004519 GO:GO:0045190 GO:GO:0010165
GO:GO:0051276 GO:GO:0010259 GO:GO:0000784 GO:GO:0006312
GO:GO:0048568 GO:GO:0009650 GO:GO:0006949 GO:GO:0000718
GO:GO:0006283 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0000109
eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849 TIGRFAMs:TIGR00597
CTD:2067 HOVERGEN:HBG051497 OMA:HPDYIHQ OrthoDB:EOG4R23VJ
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 EMBL:M13194 EMBL:M26163 EMBL:M28650 EMBL:AF001925
EMBL:AB069681 EMBL:BT019806 EMBL:AF512555 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 EMBL:BC008930
EMBL:BC052813 IPI:IPI00014040 IPI:IPI00045494 IPI:IPI00401902
PIR:A32875 RefSeq:NP_001159521.1 RefSeq:NP_001974.1
RefSeq:NP_973730.1 UniGene:Hs.435981 PDB:1Z00 PDB:2A1I PDB:2A1J
PDB:2JNW PDB:2JPD PDBsum:1Z00 PDBsum:2A1I PDBsum:2A1J PDBsum:2JNW
PDBsum:2JPD ProteinModelPortal:P07992 SMR:P07992 DIP:DIP-24235N
IntAct:P07992 STRING:P07992 PhosphoSite:P07992 DMDM:119538
PRIDE:P07992 DNASU:2067 Ensembl:ENST00000013807
Ensembl:ENST00000300853 Ensembl:ENST00000340192 GeneID:2067
KEGG:hsa:2067 UCSC:uc002pbs.2 GeneCards:GC19M045912 HGNC:HGNC:3433
HPA:CAB004390 HPA:HPA029773 MIM:126380 MIM:610758
neXtProt:NX_P07992 Orphanet:1466 PharmGKB:PA155 ChiTaRS:ERCC1
EvolutionaryTrace:P07992 GenomeRNAi:2067 NextBio:8403
ArrayExpress:P07992 Bgee:P07992 CleanEx:HS_ERCC1
Genevestigator:P07992 GermOnline:ENSG00000012061 Uniprot:P07992
Length = 297
Score = 302 (111.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 59/103 (57%), Positives = 76/103 (73%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 194 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 254 LTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 296
Score = 166 (63.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 143
>UNIPROTKB|Q1LZ75 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9913 "Bos taurus" [GO:0006295 "nucleotide-excision repair,
DNA incision, 3'-to lesion" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0006312 "mitotic recombination" evidence=ISS]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=ISS] [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0000784 "nuclear
chromosome, telomeric region" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] [GO:0032205
"negative regulation of telomere maintenance" evidence=ISS]
[GO:0051276 "chromosome organization" evidence=IEA] [GO:0048477
"oogenesis" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0035166 "post-embryonic hemopoiesis"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009650 "UV protection" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006949
"syncytium formation" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0000720
"pyrimidine dimer repair by nucleotide-excision repair"
evidence=IEA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005737 GO:GO:0043066 GO:GO:0006979
GO:GO:0003684 GO:GO:0008283 GO:GO:0048477 GO:GO:0007283
GO:GO:0001302 GO:GO:0008584 GO:GO:0003697 GO:GO:0007281
GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0035264
GO:GO:0008022 GO:GO:0045190 GO:GO:0010165 GO:GO:0051276
GO:GO:0010259 GO:GO:0000784 GO:GO:0006312 GO:GO:0009650
GO:GO:0006949 GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849
TIGRFAMs:TIGR00597 EMBL:BC116163 IPI:IPI00717427
RefSeq:NP_001069853.1 UniGene:Bt.6079 ProteinModelPortal:Q1LZ75
SMR:Q1LZ75 STRING:Q1LZ75 PRIDE:Q1LZ75 Ensembl:ENSBTAT00000023078
GeneID:615637 KEGG:bta:615637 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 InParanoid:Q1LZ75 OMA:HPDYIHQ OrthoDB:EOG4R23VJ
NextBio:20899708 GO:GO:0032205 GO:GO:0006295 GO:GO:0006296
GO:GO:0035166 GO:GO:0000720 Uniprot:Q1LZ75
Length = 294
Score = 305 (112.4 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 190 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 249
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDL+ CPG+G +K +RL+D FHEPF +V
Sbjct: 250 LTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292
Score = 161 (61.7 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 95 NSIIVSPRQRGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSL 139
>UNIPROTKB|Q6UIQ5 [details] [associations]
symbol:ERCC1 "Excision repair protein" species:9598 "Pan
troglodytes" [GO:0000109 "nucleotide-excision repair complex"
evidence=ISS] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0003697 "single-stranded DNA binding" evidence=ISS] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=ISS] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=ISS] [GO:0006312 "mitotic
recombination" evidence=ISS] [GO:0006979 "response to oxidative
stress" evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0032205 "negative regulation of telomere
maintenance" evidence=ISS] [GO:0000014 "single-stranded DNA
specific endodeoxyribonuclease activity" evidence=ISS] [GO:0043566
"structure-specific DNA binding" evidence=ISS] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 GO:GO:0005737 GO:GO:0043066
GO:GO:0006979 GO:GO:0003684 GO:GO:0008283 GO:GO:0048477
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0008022 GO:GO:0045190 GO:GO:0010165
GO:GO:0051276 GO:GO:0010259 GO:GO:0000784 GO:GO:0006312
GO:GO:0009650 GO:GO:0006949 GO:GO:0000014 InterPro:IPR010994
SUPFAM:SSF47781 GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 HOVERGEN:HBG051497
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 EMBL:AY369808 RefSeq:NP_001181860.1 UniGene:Ptr.6444
ProteinModelPortal:Q6UIQ5 STRING:Q6UIQ5 GeneID:450179
KEGG:ptr:450179 NextBio:20833138 Uniprot:Q6UIQ5
Length = 251
Score = 298 (110.0 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 58/100 (58%), Positives = 74/100 (74%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 151 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 210
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF
Sbjct: 211 LTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 250
Score = 166 (63.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 56 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 100
>ZFIN|ZDB-GENE-040426-2606 [details] [associations]
symbol:ercc1 "excision repair cross-complementing
rodent repair deficiency, complementation group 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 ZFIN:ZDB-GENE-040426-2606
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
HOVERGEN:HBG051497 EMBL:BX571724 EMBL:BC066697 EMBL:BC152194
IPI:IPI00500105 RefSeq:NP_001096608.1 UniGene:Dr.75544 SMR:Q6NY87
STRING:Q6NY87 Ensembl:ENSDART00000041751 GeneID:100001425
KEGG:dre:100001425 InParanoid:Q6NY87 NextBio:20785034
Uniprot:Q6NY87
Length = 342
Score = 293 (108.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 58/100 (58%), Positives = 74/100 (74%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL++ Q++ +YLS++T LT+V+SVNKTD +TL
Sbjct: 235 CTLILAWSPEEAGRYLETYKSYEKKPADLLKEQVEKNYLSQVTDCLTTVKSVNKTDAMTL 294
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
STF SL I+ AS E+L CPG+G +K +RLYD H+PF
Sbjct: 295 LSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQPF 334
Score = 156 (60.0 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 26/45 (57%), Positives = 39/45 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F +VV DY++G+ +CAL+LS+
Sbjct: 140 NSIIVSPRQRGNPILKFVRNVPWEFGEVVPDYVLGRTTCALFLSV 184
>RGD|1306992 [details] [associations]
symbol:Ercc1 "excision repair cross-complementing rodent repair
deficiency, complementation group 1" species:10116 "Rattus
norvegicus" [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=IEA;ISO] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000720
"pyrimidine dimer repair by nucleotide-excision repair"
evidence=IEA;ISO] [GO:0000784 "nuclear chromosome, telomeric
region" evidence=IEA;ISO] [GO:0001094 "TFIID-class transcription
factor binding" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003684 "damaged DNA binding" evidence=IEA;ISO] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005669 "transcription factor TFIID
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA;ISO] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA;ISO] [GO:0006302
"double-strand break repair" evidence=IEA;ISO] [GO:0006310 "DNA
recombination" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IEA;ISO] [GO:0006949 "syncytium formation"
evidence=IEA;ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=IEA;ISO] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0007584 "response to nutrient" evidence=IEP] [GO:0008022
"protein C-terminus binding" evidence=IEA;ISO] [GO:0008283 "cell
proliferation" evidence=IEA;ISO] [GO:0008584 "male gonad
development" evidence=IEA;ISO] [GO:0009628 "response to abiotic
stimulus" evidence=IEP] [GO:0009650 "UV protection"
evidence=IEA;ISO] [GO:0009744 "response to sucrose stimulus"
evidence=IEP] [GO:0010165 "response to X-ray" evidence=IEA;ISO]
[GO:0010259 "multicellular organismal aging" evidence=IEA;ISO]
[GO:0017025 "TBP-class protein binding" evidence=ISO] [GO:0019904
"protein domain specific binding" evidence=IEA;ISO] [GO:0032205
"negative regulation of telomere maintenance" evidence=IEA;ISO]
[GO:0035166 "post-embryonic hemopoiesis" evidence=IEA;ISO]
[GO:0035264 "multicellular organism growth" evidence=IEA;ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA;ISO] [GO:0045190 "isotype switching" evidence=IEA;ISO]
[GO:0048468 "cell development" evidence=ISO] [GO:0048477
"oogenesis" evidence=IEA;ISO] [GO:0048568 "embryonic organ
development" evidence=IEP] [GO:0051276 "chromosome organization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0043566
"structure-specific DNA binding" evidence=ISO] InterPro:IPR000445
InterPro:IPR003583 InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834
ProDom:PD013585 SMART:SM00278 RGD:1306992 GO:GO:0005634
GO:GO:0005737 GO:GO:0043066 GO:GO:0006979 GO:GO:0003684
GO:GO:0008283 GO:GO:0009744 GO:GO:0007584 GO:GO:0048477
GO:GO:0007283 GO:GO:0001302 GO:GO:0008584 GO:GO:0003697
GO:GO:0007281 GO:GO:0006302 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0035264 GO:GO:0045190 GO:GO:0010165 GO:GO:0051276
GO:GO:0010259 GO:GO:0000784 GO:GO:0006312 EMBL:CH473979
GO:GO:0048568 GO:GO:0009650 GO:GO:0006949 GO:GO:0000014
GO:GO:0009628 InterPro:IPR010994 SUPFAM:SSF47781 GO:GO:0000109
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
OMA:HPDYIHQ OrthoDB:EOG4R23VJ GO:GO:0032205 GO:GO:0006295
GO:GO:0006296 GO:GO:0035166 GO:GO:0000720 IPI:IPI00188143
RefSeq:NP_001099698.1 UniGene:Rn.7320 Ensembl:ENSRNOT00000024113
GeneID:292673 KEGG:rno:292673 UCSC:RGD:1306992 NextBio:634489
Uniprot:D3ZAQ9
Length = 298
Score = 297 (109.6 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 58/103 (56%), Positives = 75/103 (72%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD TL
Sbjct: 194 CTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 254 LTTFGSLEQLITASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
Score = 149 (57.5 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 25/45 (55%), Positives = 39/45 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++I+VS RQ+GNP+LK++R+V W F +V DY++GQ++CAL+LSL
Sbjct: 99 SSIIVSPRQRGNPVLKFVRSVPWEFGEVTPDYVLGQSTCALFLSL 143
>UNIPROTKB|B3KRR0 [details] [associations]
symbol:ERCC1 "cDNA FLJ34720 fis, clone MESAN2005724, highly
similar to DNA EXCISION REPAIR PROTEIN ERCC-1" species:9606 "Homo
sapiens" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000445 InterPro:IPR003583
InterPro:IPR004579 Pfam:PF00633 Pfam:PF03834 ProDom:PD013585
SMART:SM00278 GO:GO:0005634 GO:GO:0005737 GO:GO:0003684
GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
InterPro:IPR010994 SUPFAM:SSF47781 HOGENOM:HOG000037440
TIGRFAMs:TIGR00597 HOVERGEN:HBG051497 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 UniGene:Hs.435981 HGNC:HGNC:3433
ChiTaRS:ERCC1 EMBL:AK092039 IPI:IPI00640338 SMR:B3KRR0
STRING:B3KRR0 Ensembl:ENST00000423698 UCSC:uc002pbu.2
Uniprot:B3KRR0
Length = 225
Score = 302 (111.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 59/103 (57%), Positives = 76/103 (73%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 122 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 181
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 182 LTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 224
Score = 136 (52.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 71
>UNIPROTKB|F1PPD0 [details] [associations]
symbol:ERCC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275 OMA:HPDYIHQ
EMBL:AAEX03000876 Ensembl:ENSCAFT00000007174 Uniprot:F1PPD0
Length = 323
Score = 263 (97.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 53/92 (57%), Positives = 68/92 (73%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 194 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRL 266
+TFGSL +M AS EDLA CPG+G +KV+ +
Sbjct: 254 LTTFGSLEQLMAASREDLALCPGLGPQKVRAM 285
Score = 164 (62.8 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSL 143
>UNIPROTKB|K7ES46 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR010994
SUPFAM:SSF47781 TIGRFAMs:TIGR00597 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000589381
Uniprot:K7ES46
Length = 209
Score = 252 (93.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 122 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 181
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERK 262
+TFGSL ++ AS EDLA CPG+G +K
Sbjct: 182 LTTFGSLEQLIAASREDLALCPGLGPQK 209
Score = 136 (52.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 71
>UNIPROTKB|K7EP14 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000592083 Uniprot:K7EP14
Length = 258
Score = 184 (69.8 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 38/65 (58%), Positives = 48/65 (73%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 194 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 253
Query: 235 GSTFG 239
+TFG
Sbjct: 254 LTTFG 258
Score = 166 (63.5 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 143
>ASPGD|ASPL0000074569 [details] [associations]
symbol:AN4331 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0007534 "gene conversion at mating-type locus"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005634 GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335
SUPFAM:SSF52980 GO:GO:0004519 EMBL:BN001303 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849 TIGRFAMs:TIGR00597
EMBL:AACD01000075 OrthoDB:EOG4DBXQ6 RefSeq:XP_661935.1
ProteinModelPortal:Q5B549 STRING:Q5B549
EnsemblFungi:CADANIAT00006130 GeneID:2872131 KEGG:ani:AN4331.2
HOGENOM:HOG000187852 OMA:PRSINKS Uniprot:Q5B549
Length = 328
Score = 154 (59.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 37/103 (35%), Positives = 54/103 (52%)
Query: 175 NSCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
N+ L L S E YLE K E+ I+ Q Y L +T+ RS+NK+D
Sbjct: 147 NNLTLILCWSAPEAAHYLELFKSCEHSQPTAIRTQQAQSYKDSLVEFVTAPRSINKSDAA 206
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL + ++A E ++ PG GE+KV+ + E F+
Sbjct: 207 SLISTFGSLQNAINAQPEQISAVPGWGEKKVRAWCNAVREEFR 249
Score = 141 (54.7 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 25/46 (54%), Positives = 36/46 (78%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+AILVS RQKGNP+L +I+ W +AD+ DY++G +CAL+LSL+
Sbjct: 54 SAILVSTRQKGNPILNHIKFQPWEYADIPADYVIGATTCALFLSLK 99
>GENEDB_PFALCIPARUM|PFB0160w [details] [associations]
symbol:PFB0160w "ERCC1 nucleotide excision
repair protein, putative" species:5833 "Plasmodium falciparum"
[GO:0004520 "endodeoxyribonuclease activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004520 EMBL:AE001362 InterPro:IPR010994 SUPFAM:SSF47781
KO:K10849 TIGRFAMs:TIGR00597 OMA:KQRGNPI PIR:E71621
RefSeq:XP_001349545.1 ProteinModelPortal:O96136
EnsemblProtists:PFB0160w:mRNA GeneID:812627 KEGG:pfa:PFB0160w
EuPathDB:PlasmoDB:PF3D7_0203300 HOGENOM:HOG000284229
ProtClustDB:CLSZ2429170 Uniprot:O96136
Length = 242
Score = 163 (62.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS-VRSVNKTDVVTLGSTFGS 240
S EEC R +E ++YE K + +I+ ++ + H L +R ++ TD +TL + F +
Sbjct: 148 SNEECARVIEDFRIYEKKISYIIKKKISSSNQEEKIHELLKKIRCIHTTDCITLTTKFKN 207
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+I+ A EDL C G+G +K++ L TF++PF
Sbjct: 208 FKNIIQAKKEDLISCSGLGIKKIQALMATFNDPF 241
Score = 110 (43.8 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 18/44 (40%), Positives = 35/44 (79%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+++S RQK NP++K I+ VR+ F +++ D+LVG+N+ L++S++
Sbjct: 48 LIISLRQKLNPVIKKIKRVRYKFNNIIPDFLVGKNNACLFISMK 91
>UNIPROTKB|O96136 [details] [associations]
symbol:PFB0160w "ERCC1 nucleotide excision repair protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004520
"endodeoxyribonuclease activity" evidence=ISS] InterPro:IPR004579
Pfam:PF03834 ProDom:PD013585 GO:GO:0005634 GO:GO:0003684
GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004520
EMBL:AE001362 InterPro:IPR010994 SUPFAM:SSF47781 KO:K10849
TIGRFAMs:TIGR00597 OMA:KQRGNPI PIR:E71621 RefSeq:XP_001349545.1
ProteinModelPortal:O96136 EnsemblProtists:PFB0160w:mRNA
GeneID:812627 KEGG:pfa:PFB0160w EuPathDB:PlasmoDB:PF3D7_0203300
HOGENOM:HOG000284229 ProtClustDB:CLSZ2429170 Uniprot:O96136
Length = 242
Score = 163 (62.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 32/94 (34%), Positives = 55/94 (58%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS-VRSVNKTDVVTLGSTFGS 240
S EEC R +E ++YE K + +I+ ++ + H L +R ++ TD +TL + F +
Sbjct: 148 SNEECARVIEDFRIYEKKISYIIKKKISSSNQEEKIHELLKKIRCIHTTDCITLTTKFKN 207
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+I+ A EDL C G+G +K++ L TF++PF
Sbjct: 208 FKNIIQAKKEDLISCSGLGIKKIQALMATFNDPF 241
Score = 110 (43.8 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 18/44 (40%), Positives = 35/44 (79%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+++S RQK NP++K I+ VR+ F +++ D+LVG+N+ L++S++
Sbjct: 48 LIISLRQKLNPVIKKIKRVRYKFNNIIPDFLVGKNNACLFISMK 91
>POMBASE|SPBC4F6.15c [details] [associations]
symbol:swi10 "DNA repair endonuclease Swi10"
species:4896 "Schizosaccharomyces pombe" [GO:0000109
"nucleotide-excision repair complex" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006296
"nucleotide-excision repair, DNA incision, 5'-to lesion"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0007534 "gene conversion at mating-type locus" evidence=IMP]
[GO:0031593 "polyubiquitin binding" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
PomBase:SPBC4F6.15c GO:GO:0005829 GO:GO:0003684 EMBL:CU329671
GenomeReviews:CU329671_GR InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0031593 GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781
GO:GO:0000109 eggNOG:COG5241 HOGENOM:HOG000037440 KO:K10849
TIGRFAMs:TIGR00597 GO:GO:0006296 GO:GO:0007534 OrthoDB:EOG4DBXQ6
EMBL:X61926 PIR:S30292 RefSeq:NP_596115.1 ProteinModelPortal:Q06182
SMR:Q06182 STRING:Q06182 EnsemblFungi:SPBC4F6.15c.1 GeneID:2540887
KEGG:spo:SPBC4F6.15c OMA:KQRGNPI NextBio:20802003 Uniprot:Q06182
Length = 252
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 152 LLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTD 211
+L + N + + ++V +V Q + L S EE RYLET K YEN LI + TD
Sbjct: 113 ILVDVENHQASIQELVKTSIVNQYTLILAWSSEEAARYLETYKAYENMSPALIMEKPSTD 172
Query: 212 YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
YLS++ LTS+R +NK+D ++L S FGSL + AS ++L + G G KV R +
Sbjct: 173 YLSQVQSFLTSIRGINKSDSLSLLSKFGSLERALVASRDELEQLEGWGPTKVNRFLEAVQ 232
Query: 272 EPF 274
+PF
Sbjct: 233 QPF 235
Score = 140 (54.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILV+ RQKGNPLL ++RNV W + D+V D+++G C+L+LSL+
Sbjct: 41 HSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLK 86
>FB|FBgn0028434 [details] [associations]
symbol:Ercc1 "Ercc1" species:7227 "Drosophila melanogaster"
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=ISS] [GO:0006296 "nucleotide-excision repair,
DNA incision, 5'-to lesion" evidence=ISS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0043234 "protein
complex" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] InterPro:IPR004579 Pfam:PF03834
ProDom:PD013585 EMBL:AE013599 GO:GO:0005634 GO:GO:0043234
GO:GO:0003684 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
GO:GO:0007131 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 TIGRFAMs:TIGR00597 CTD:2067 GeneTree:ENSGT00390000011275
GO:GO:0006296 OMA:KQRGNPI EMBL:AF146797 RefSeq:NP_477468.1
UniGene:Dm.23250 SMR:Q7KMG7 IntAct:Q7KMG7 STRING:Q7KMG7
EnsemblMetazoa:FBtr0087448 GeneID:36654 KEGG:dme:Dmel_CG10215
UCSC:CG10215-RA FlyBase:FBgn0028434 InParanoid:Q7KMG7
OrthoDB:EOG4PVMFW GenomeRNAi:36654 NextBio:799713 Uniprot:Q7KMG7
Length = 259
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 43/104 (41%), Positives = 67/104 (64%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L + EE G+ +ET K +E +P DLI +++++ +L ALT+++ VNKTD
Sbjct: 153 LLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIKPVNKTD 212
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L TFG+L +I++AS E L++ G+G RK K+LY T EPF
Sbjct: 213 AAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQEPF 256
Score = 124 (48.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFAD-VVCDYLVGQNSCALYLSLEE--------CGRY 189
+ +LV +Q+GNP+LK I NV F D +V DY+VG+ SC LYLSL+ C R
Sbjct: 61 HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRL 120
Query: 190 LETIKVYENKPADLIQGQMDTDYLSRLTHALTSV 223
K+YE + ++ Q+DT + +LT +
Sbjct: 121 KALGKMYELR---VLLVQVDTPEPNNALKSLTRI 151
>UNIPROTKB|K7EJW9 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 ProDom:PD013585 InterPro:IPR011335
SUPFAM:SSF52980 EMBL:AC092309 EMBL:AC138128 EMBL:AC138534
EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000592444 Uniprot:K7EJW9
Length = 112
Score = 113 (44.8 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
C L L S EE GRYLET K YE KPADL+ +++ D++SR
Sbjct: 7 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR 47
Score = 77 (32.2 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRL 266
SL ++ AS EDLA CPG+G +KV+ L
Sbjct: 48 SLEQLIAASREDLALCPGLGPQKVRAL 74
>UNIPROTKB|K7ER60 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000591636 Uniprot:K7ER60
Length = 213
Score = 166 (63.5 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 143
>UNIPROTKB|I3LFQ1 [details] [associations]
symbol:ERCC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0045190 "isotype
switching" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035166 "post-embryonic
hemopoiesis" evidence=IEA] [GO:0032205 "negative regulation of
telomere maintenance" evidence=IEA] [GO:0019904 "protein domain
specific binding" evidence=IEA] [GO:0010259 "multicellular
organismal aging" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008584
"male gonad development" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006949 "syncytium
formation" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA] [GO:0006295
"nucleotide-excision repair, DNA incision, 3'-to lesion"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IEA] [GO:0000720 "pyrimidine dimer repair by
nucleotide-excision repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
GO:GO:0005737 GO:GO:0043066 GO:GO:0006979 GO:GO:0003684
GO:GO:0008283 GO:GO:0048477 GO:GO:0007283 GO:GO:0001302
GO:GO:0008584 GO:GO:0003697 GO:GO:0007281 GO:GO:0006302
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0035264 GO:GO:0045190
GO:GO:0010165 GO:GO:0051276 GO:GO:0010259 GO:GO:0000784
GO:GO:0006312 GO:GO:0009650 GO:GO:0006949 GO:GO:0000014
GO:GO:0000109 TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275
GO:GO:0032205 GO:GO:0006295 GO:GO:0006296 GO:GO:0035166
GO:GO:0000720 Ensembl:ENSSSCT00000022562 OMA:PPARRKF Uniprot:I3LFQ1
Length = 148
Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 94 NSIIVSPRQRGNPVLRFVRNVPWQFGDVLPDYVLGQSTCALFLSL 138
>UNIPROTKB|K7EK97 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 EMBL:AC092309 EMBL:AC138128
EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433 Ensembl:ENST00000589214
Uniprot:K7EK97
Length = 141
Score = 158 (60.7 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 26/43 (60%), Positives = 38/43 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYL 181
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+L
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFL 141
>UNIPROTKB|K7ER89 [details] [associations]
symbol:ERCC1 "DNA excision repair protein ERCC-1"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
InterPro:IPR011335 SUPFAM:SSF52980 TIGRFAMs:TIGR00597 EMBL:AC092309
EMBL:AC138128 EMBL:AC138534 EMBL:AC139353 HGNC:HGNC:3433
Ensembl:ENST00000592023 Uniprot:K7ER89
Length = 234
Score = 166 (63.5 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSL 143
Score = 113 (44.8 bits), Expect = 0.00029, P = 0.00029
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
C L L S EE GRYLET K YE KPADL+ +++ D++SR
Sbjct: 194 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR 234
>WB|WBGene00008665 [details] [associations]
symbol:ercc-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585 GO:GO:0005634
GO:GO:0003684 GO:GO:0006281 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0004519 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 TIGRFAMs:TIGR00597 GeneTree:ENSGT00390000011275
EMBL:Z80216 OMA:KQRGNPI PIR:T20726 RefSeq:NP_492652.2
ProteinModelPortal:Q93456 SMR:Q93456 STRING:Q93456 PaxDb:Q93456
EnsemblMetazoa:F10G8.7.1 EnsemblMetazoa:F10G8.7.2 GeneID:172867
KEGG:cel:CELE_F10G8.7 UCSC:F10G8.7 CTD:172867 WormBase:F10G8.7
HOGENOM:HOG000017382 InParanoid:Q93456 NextBio:877331
Uniprot:Q93456
Length = 262
Score = 110 (43.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMD-------TDYLSRLTHA----LTSVRSVNKTD 230
++EE Y+E K + K + + +D +D R A LT+ RS+ KTD
Sbjct: 153 TVEEAAEYIELFKTTQKKEITIKKKAIDDGGDSSMSDERRRNREAAIGFLTAARSITKTD 212
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L FG+L I AS ++ CPG+G K K L+ H
Sbjct: 213 ADRLLFHFGTLQAISTASETSISACPGVGPIKAKNLHSFLH 253
Score = 101 (40.6 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 140 AILVSQR-QKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
A++V++R Q+GNP+LKY+RNVR+ + D+ D+ G +YLS +
Sbjct: 50 ALVVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFK 95
>DICTYBASE|DDB_G0267682 [details] [associations]
symbol:ercc1 "DNA excision repair protein 1"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=ISS] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
dictyBase:DDB_G0267682 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0006289
GO:GO:0000014 InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241
KO:K10849 RefSeq:XP_647218.1 HSSP:P07992 STRING:Q55GG6
EnsemblProtists:DDB0232362 GeneID:8616022 KEGG:ddi:DDB_G0267682
OMA:NDIASTN GO:GO:0000110 Uniprot:Q55GG6
Length = 514
Score = 158 (60.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYL---SRLTHALTSVRSVNKTDVVTLGSTFGSL 241
E +YLE K + N+ D I+ + L S+ LTS++SVNKTD TL F ++
Sbjct: 332 EAAKYLEAYKTFNNRAPDPIKARAQPIELGGKSKNEQVLTSIKSVNKTDATTLLKNFQTM 391
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
I L++ PG G KV++ Y+T ++PFK
Sbjct: 392 QQIFTCQKTTLSKLPGFGPVKVQKFYNTINQPFK 425
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 26 NLKNGRNLME-NEEQNNE--SAKAQPPQNKKKTIITIPSYQEVINATN 70
N N ++ N NN+ S NK + IPS + + ++
Sbjct: 19 NTNNDNDIASTNNNTNNDDDSTTTNTSTNKPRKRFVIPSASQALKKSD 66
>CGD|CAL0001589 [details] [associations]
symbol:RAD10 species:5476 "Candida albicans" [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IEA;ISA] [GO:0006296 "nucleotide-excision repair, DNA
incision, 5'-to lesion" evidence=IEA;ISA] [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA;ISA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0031593 "polyubiquitin binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0034644 "cellular response to UV" evidence=IMP]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0000733
"DNA strand renaturation" evidence=IEA] [GO:0000736 "double-strand
break repair via single-strand annealing, removal of nonhomologous
ends" evidence=IEA] InterPro:IPR004579 Pfam:PF03834 ProDom:PD013585
CGD:CAL0001589 GO:GO:0003684 InterPro:IPR011335 SUPFAM:SSF52980
GO:GO:0034644 GO:GO:0004519 EMBL:AACQ01000041 EMBL:AACQ01000040
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849
TIGRFAMs:TIGR00597 GO:GO:0006296 GO:GO:0000110 RefSeq:XP_718490.1
RefSeq:XP_718574.1 ProteinModelPortal:Q5AA15 STRING:Q5AA15
GeneID:3639804 GeneID:3639884 KEGG:cal:CaO19.10006
KEGG:cal:CaO19.2469 HOGENOM:HOG000246576 Uniprot:Q5AA15
Length = 338
Score = 135 (52.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/117 (32%), Positives = 58/117 (49%)
Query: 169 DYLVGQN-SCALYLSLEECGRYLETIKVYENKPAD---LIQGQMDTDYLSRLTHALTSVR 224
D+ + + S L S EE Y+ K + P +I+G +DY S + A T ++
Sbjct: 214 DFCIKHDLSLVLAWSYEEAANYIALCKQLDKAPLKGRKIIEGTKGSDYNSSVVKAFTGIK 273
Query: 225 SVNKTDVVTLGSTFGSLSHIMDASMED-------LARCPGIGERKVKRLYDTFHEPF 274
SVNKTDV L + S+ I+ S ++ LA PG+G +K++ L F EPF
Sbjct: 274 SVNKTDVSNLLANCKSVKEIVLQSCQNDNDDGIGLASIPGLGAKKLENLKKVFSEPF 330
>UNIPROTKB|Q5AA15 [details] [associations]
symbol:RAD10 "Putative uncharacterized protein ERC1"
species:237561 "Candida albicans SC5314" [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=ISA]
[GO:0006296 "nucleotide-excision repair, DNA incision, 5'-to
lesion" evidence=ISA] [GO:0034644 "cellular response to UV"
evidence=IMP] [GO:0000014 "single-stranded DNA specific
endodeoxyribonuclease activity" evidence=ISA] InterPro:IPR004579
Pfam:PF03834 ProDom:PD013585 CGD:CAL0001589 GO:GO:0003684
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0034644 GO:GO:0004519
EMBL:AACQ01000041 EMBL:AACQ01000040 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG5241 KO:K10849 TIGRFAMs:TIGR00597
GO:GO:0006296 GO:GO:0000110 RefSeq:XP_718490.1 RefSeq:XP_718574.1
ProteinModelPortal:Q5AA15 STRING:Q5AA15 GeneID:3639804
GeneID:3639884 KEGG:cal:CaO19.10006 KEGG:cal:CaO19.2469
HOGENOM:HOG000246576 Uniprot:Q5AA15
Length = 338
Score = 135 (52.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/117 (32%), Positives = 58/117 (49%)
Query: 169 DYLVGQN-SCALYLSLEECGRYLETIKVYENKPAD---LIQGQMDTDYLSRLTHALTSVR 224
D+ + + S L S EE Y+ K + P +I+G +DY S + A T ++
Sbjct: 214 DFCIKHDLSLVLAWSYEEAANYIALCKQLDKAPLKGRKIIEGTKGSDYNSSVVKAFTGIK 273
Query: 225 SVNKTDVVTLGSTFGSLSHIMDASMED-------LARCPGIGERKVKRLYDTFHEPF 274
SVNKTDV L + S+ I+ S ++ LA PG+G +K++ L F EPF
Sbjct: 274 SVNKTDVSNLLANCKSVKEIVLQSCQNDNDDGIGLASIPGLGAKKLENLKKVFSEPF 330
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.127 0.352 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 307 0.0010 115 3 11 23 0.47 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 604 (64 KB)
Total size of DFA: 190 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.62u 0.11s 26.73t Elapsed: 00:00:01
Total cpu time: 26.62u 0.11s 26.73t Elapsed: 00:00:01
Start: Mon May 20 20:34:00 2013 End: Mon May 20 20:34:01 2013