BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017612
(368 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255542562|ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
gi|223548305|gb|EEF49796.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
communis]
Length = 392
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 218/383 (56%), Positives = 248/383 (64%), Gaps = 80/383 (20%)
Query: 51 NKKKTIITIPSYQEVINATNPP--QNLFTPSQSFSQAFSFIKSSEFYNPPPPPPANPPTT 108
N KK +I IPSYQEVI ++ P ++LF PSQ+FSQAFSFIK SEFY PPP A
Sbjct: 18 NAKKVVIQIPSYQEVIESSQNPKTESLFKPSQTFSQAFSFIKDSEFYTPPPQSSA----V 73
Query: 109 SQNPTLSQGGEQNVGTASASASSSQSI----QSRNAILVSQRQKGNPLLKYIRNVRWAFA 164
S N ++ T + S SQS+ RN+ILVS RQKGNPLLK+IRNVRWAFA
Sbjct: 74 SNNA-------NSIQTTQSVPSPSQSVALTGNYRNSILVSHRQKGNPLLKHIRNVRWAFA 126
Query: 165 DVVC----------------------DYLVGQ---------------------------- 174
DVVC DYL +
Sbjct: 127 DVVCDYLLGQNCCSLYLSLRYHLLHPDYLYYRIRELQKNYKLRVVLCHVDVEDVVKPLLE 186
Query: 175 -------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRS 225
+ C L SLEECGRYLETIK+YENKPADLIQGQMDTDYLSRLTHALT++R
Sbjct: 187 VTKTALLHDCTLLCAWSLEECGRYLETIKMYENKPADLIQGQMDTDYLSRLTHALTTIRH 246
Query: 226 VNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIP 285
VNKTDVVTLGSTFGSLS+IMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHP +P
Sbjct: 247 VNKTDVVTLGSTFGSLSNIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPAVP 306
Query: 286 ETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKNRS 345
ET SQKD E + V+EVTEV K D +K RKKE E TVKSALSAAF+KYA+ K+ ++S
Sbjct: 307 ET-SQKDSEPALVDEVTEVGKGEYDESKWRKKEPELTVKSALSAAFSKYANTFVKRTDKS 365
Query: 346 --SQVGETSVS-NSGTENSNSGQ 365
GETS S +GT+N N G+
Sbjct: 366 EGENAGETSCSVETGTDNRNPGE 388
>gi|224130994|ref|XP_002328427.1| predicted protein [Populus trichocarpa]
gi|222838142|gb|EEE76507.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/387 (57%), Positives = 257/387 (66%), Gaps = 83/387 (21%)
Query: 34 MENEEQNNESAKAQPPQNKKKTIITIPSYQEVINATN--PPQ----NLFTPSQSFSQAFS 87
ME EE+ E QNKK +I IPSYQEVI ++ P Q +LF PSQ+FSQAFS
Sbjct: 1 MEREERGEEQNTNSSNQNKK-VLIQIPSYQEVIESSQVKPTQTQESSLFKPSQTFSQAFS 59
Query: 88 FIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQ 147
FIK+SEFY+PPPPPP+ S+ G S ++SS Q+ QSRNAILVS RQ
Sbjct: 60 FIKNSEFYSPPPPPPSK----------SEHG------PSMASSSVQNNQSRNAILVSHRQ 103
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVG---------------------------QNSCALY 180
KGNPLLK+IRNV+WAFADVVCDYL+G Q +C L
Sbjct: 104 KGNPLLKHIRNVKWAFADVVCDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNCKLR 163
Query: 181 L--------------------------------SLEECGRYLETIKVYENKPADLIQGQM 208
+ SLEECGRYLETIK+YENKPADLIQGQM
Sbjct: 164 VVLCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKMYENKPADLIQGQM 223
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268
DTDY SRL HALT+VR VNKTDVVTLGSTFGSLS+IMDASMEDLARCPGIGERKVKRLYD
Sbjct: 224 DTDYSSRLHHALTTVRRVNKTDVVTLGSTFGSLSNIMDASMEDLARCPGIGERKVKRLYD 283
Query: 269 TFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALS 328
TFHEPFKRVVSSHP +P+TP QKD E SSV+EV E+E + + NK RKKE E TVKSALS
Sbjct: 284 TFHEPFKRVVSSHPVVPQTPVQKDTEPSSVDEVAEMEMEEANANKHRKKEPELTVKSALS 343
Query: 329 AAFAKYA-DKIGKKKNRSSQVGETSVS 354
+AFAK A +K+G KK + +VGETS +
Sbjct: 344 SAFAKCATNKLGNKKFQREKVGETSTA 370
>gi|356533598|ref|XP_003535349.1| PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max]
Length = 398
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 201/379 (53%), Positives = 242/379 (63%), Gaps = 96/379 (25%)
Query: 55 TIITIPSYQEVI---NATNPPQNLFTPSQSFSQAFSFIKSSEFYNPPPPP----PANPPT 107
+I IPSYQEV+ A + P +LF PSQ+FS+AF+F+KSS+FY+PPP ++ P+
Sbjct: 19 VVIRIPSYQEVVESSQAKSTPSSLFVPSQTFSEAFAFVKSSDFYSPPPKSRETGQSDAPS 78
Query: 108 TSQNPTLSQGGEQNVGTASASASSSQ-SIQSRNAILVSQRQ-----KGNPLLKYIRNVRW 161
++ P+ A+A+ASS+ S Q+RN+ILVS RQ KGNPLLK+IRNVRW
Sbjct: 79 STSTPS----------PATAAASSTIPSSQNRNSILVSHRQCIILQKGNPLLKHIRNVRW 128
Query: 162 AFADVVC----------------------DYLVGQ------------------------- 174
AFADVVC DYL +
Sbjct: 129 AFADVVCDYMLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKP 188
Query: 175 ----------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS 222
+ C L SLEECGRYLETIKVYENKPAD+IQGQMDTDYLSRLTH+LT+
Sbjct: 189 LLEVTKTAMLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQGQMDTDYLSRLTHSLTT 248
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHP 282
VR VNKTDVVTLG+TFGSLS+IM ASMEDLARCPGIGERKVKRL+DTFHEPFKRV SS
Sbjct: 249 VRHVNKTDVVTLGTTFGSLSNIMGASMEDLARCPGIGERKVKRLFDTFHEPFKRVESSRQ 308
Query: 283 PIPETPSQ-----------KDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAF 331
IPET Q E SS+ E + ++DTEDV+KRRKKE E TVKSALSAAF
Sbjct: 309 AIPETSVQNKPASPESSIRNKAESSSLIE--DKQEDTEDVSKRRKKEPEVTVKSALSAAF 366
Query: 332 AKYADKIGKKKNRSSQVGE 350
AKY+ ++GK+K+ +SQV E
Sbjct: 367 AKYSGRVGKRKS-TSQVEE 384
>gi|357441595|ref|XP_003591075.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
gi|355480123|gb|AES61326.1| DNA excision repair protein ERCC-1 [Medicago truncatula]
Length = 401
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 201/394 (51%), Positives = 242/394 (61%), Gaps = 84/394 (21%)
Query: 34 MENE--EQNNESAKAQPPQNKKKTIITIPSYQEVINAT---NPPQNLFTPSQSFSQAFSF 88
MENE +QNN K K T+I IPSYQEVI ++ + P +LF PSQ+FSQAF+F
Sbjct: 1 MENEAEKQNNSINK------KSSTVIRIPSYQEVIESSQTKSTPPSLFVPSQTFSQAFAF 54
Query: 89 IKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASAS----ASSSQSIQSRNAILVS 144
+KSSEFY+PPP P ++ + + +AS S+SQ Q+RNAILVS
Sbjct: 55 VKSSEFYSPPPSLPKENAPSNASSSTPSTSSATNNAPAASPNLPNSNSQPTQNRNAILVS 114
Query: 145 QRQKGNPLLKYIRNVRWAFADVVC----------------------DYLVGQ-------- 174
RQKGNPLLK+IRNVRW FADVVC DYL +
Sbjct: 115 NRQKGNPLLKHIRNVRWTFADVVCDFLLGQSSCALYLSLRYHLLHPDYLYHRIRELQKNF 174
Query: 175 ---------------------------NSCALY--LSLEECGRYLETIKVYENKPADLIQ 205
+ C L SLEECGRYLETIKVYENKPAD+IQ
Sbjct: 175 KLRVVLCHVDVEDVVKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVYENKPADIIQ 234
Query: 206 GQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKR 265
GQMDTDYLSRLTHALT+VR VNKTDVVTLG+ FGSLS+IM ASMEDLARCPGIGERKVKR
Sbjct: 235 GQMDTDYLSRLTHALTTVRHVNKTDVVTLGTNFGSLSNIMGASMEDLARCPGIGERKVKR 294
Query: 266 LYDTFHEPFKRVVSSHPPIPET-----PSQKDVE----RSSVNEVTEVEKDTEDVNKRRK 316
L+DTFHEPFKRV SS IPET P+ +D S + + ++ KD + +KR+K
Sbjct: 295 LFDTFHEPFKRVESSRQAIPETSVQNQPTSQDTSVINNTESSSSLEDIHKDADSASKRKK 354
Query: 317 KETESTVKSALSAAFAKYADKIGKKKNRSSQVGE 350
KE E TV+SALS AFAK +++ G K+N SS++ E
Sbjct: 355 KEPEFTVRSALSVAFAKLSERAG-KRNISSKLKE 387
>gi|359487720|ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
gi|296088298|emb|CBI36743.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 208/356 (58%), Positives = 236/356 (66%), Gaps = 63/356 (17%)
Query: 50 QNKKKTIITIPSYQEVINATNPP--QNLFTPSQSFSQAFSFIKSSEFYNPPPPPPANPPT 107
+NK +I IPSYQEV+ ++ +LFTPS SFSQAFSF+KSS+ Y PPPP PP
Sbjct: 17 KNKSSIVIKIPSYQEVLESSQSKTTSSLFTPSPSFSQAFSFVKSSQSYTPPPPATPPPPP 76
Query: 108 TSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVV 167
+ + Q + ++S+S S S+S QSRNAILVS RQKGNPLLK+IRNVRW FAD+V
Sbjct: 77 PPSSRQVEQL--EAPSSSSSSPSLSRSAQSRNAILVSHRQKGNPLLKHIRNVRWDFADIV 134
Query: 168 C----------------------DYLVGQ------------------------------- 174
C DYL +
Sbjct: 135 CDYLLGQNSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVVLCHVDVEDVIKPLLEVTR 194
Query: 175 ----NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNK 228
+ C L SLEECGRYLETIKVYENK AD+IQGQ DTDYLSRLTHALT+VR VNK
Sbjct: 195 TALLHDCTLLCAWSLEECGRYLETIKVYENKSADIIQGQTDTDYLSRLTHALTTVRHVNK 254
Query: 229 TDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETP 288
TDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV S P +PE P
Sbjct: 255 TDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVPSCPAVPENP 314
Query: 289 SQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKNR 344
+ E SSVNEV EVE D ED +KRRKKE E TVKSALSAAFA+Y++KIGK+ NR
Sbjct: 315 VHNNAEPSSVNEVVEVENDVEDASKRRKKEPELTVKSALSAAFAQYSEKIGKRNNR 370
>gi|449441216|ref|XP_004138378.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 391
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 203/365 (55%), Positives = 229/365 (62%), Gaps = 78/365 (21%)
Query: 48 PPQNKKKTIITIPSYQEVINATNPPQNLFTPSQSFSQAFSFIKSSEFYNPPPPPPA---- 103
PP K KTII IPSYQEVI+++ P SQSFSQAF+F+KSSEFY+PPP PP+
Sbjct: 14 PPHKKSKTIIKIPSYQEVIDSSQPN------SQSFSQAFAFLKSSEFYSPPPKPPSPSSS 67
Query: 104 ------NPPTTSQNPTLSQGGEQNVGTASA--SASSSQSIQSRNAILVSQRQKGNPLLKY 155
N +N L +A+ ++ S S SRNAILVS RQKGNPLLK+
Sbjct: 68 QSLPPSNITNPRKNDQLDTSSSSTSASAATPVNSLSVSSSVSRNAILVSNRQKGNPLLKH 127
Query: 156 IRNVRWAFADVV---------C-------------DYLVGQ------------------- 174
IRNVRWAFADVV C DYL +
Sbjct: 128 IRNVRWAFADVVPDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNFKLRVILCHVDV 187
Query: 175 ----------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRL 216
+ C L SLEECGRYLETIKVYENKPADLIQG MDTDYLSRL
Sbjct: 188 EDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQGHMDTDYLSRL 247
Query: 217 THALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
TH LTSVR VNKTDVVTLG+TFGSLSHIMDASMEDLARCPGIGERKV+RLYDTFHEPFKR
Sbjct: 248 THVLTSVRHVNKTDVVTLGTTFGSLSHIMDASMEDLARCPGIGERKVRRLYDTFHEPFKR 307
Query: 277 VVSSHPPIPETPSQKDVERSSVNEVTEVE-KDTEDVNKRRKKETESTVKSALSAAFAKYA 335
VVS+HP +PETP+Q + S NE +V+ K E+ + KKE + VKSALSAAFAKYA
Sbjct: 308 VVSTHPAVPETPTQISTKPRSSNEEQDVDGKRIEEDGSQHKKEPKLNVKSALSAAFAKYA 367
Query: 336 DKIGK 340
DKI K
Sbjct: 368 DKIAK 372
>gi|449520473|ref|XP_004167258.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cucumis
sativus]
Length = 412
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 232/376 (61%), Gaps = 78/376 (20%)
Query: 37 EEQNNESAKAQPPQNKKKTIITIPSYQEVINATNPPQNLFTPSQSFSQAFSFIKSSEFYN 96
EE + E Q P K KTII IPSYQEVI+++ P SQSFSQAF+F+KSSEFY+
Sbjct: 2 EEGSAEDNFQQTPHKKSKTIIKIPSYQEVIDSSQPN------SQSFSQAFAFLKSSEFYS 55
Query: 97 PPPPPPA----------NPPTTSQNPTLSQGGEQNVGTASA--SASSSQSIQSRNAILVS 144
PPP PP+ N +N L +A+ ++ S S SRNAILVS
Sbjct: 56 PPPKPPSPSSSQSLPPSNITNPRKNDQLDTSSSSTSASAATPVNSLSVSSSVSRNAILVS 115
Query: 145 QRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ-------- 174
RQKGNPLLK+IRN RWAFADVV C DYL +
Sbjct: 116 NRQKGNPLLKHIRNARWAFADVVPDYLLGQSSCALYLSLRYHLLHPDYLYYRIRELQKNF 175
Query: 175 ---------------------------NSCALY--LSLEECGRYLETIKVYENKPADLIQ 205
+ C L SLEECGRYLETIKVYENKPADLIQ
Sbjct: 176 KLRVILCHVDVEDVVKPLLEVTKTALLHDCTLLCAWSLEECGRYLETIKVYENKPADLIQ 235
Query: 206 GQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKR 265
G MDTDYLSRLTH LTSVR VNKTDVVTLG+TFGSLSHIMDASMEDLARCPGIGERKV+R
Sbjct: 236 GHMDTDYLSRLTHVLTSVRHVNKTDVVTLGTTFGSLSHIMDASMEDLARCPGIGERKVRR 295
Query: 266 LYDTFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVE-KDTEDVNKRRKKETESTVK 324
LYDTFHEPFKRVVS+HP +PETP+Q + S NE +V+ K E+ + KKE + VK
Sbjct: 296 LYDTFHEPFKRVVSTHPAVPETPTQISTKPRSSNEEQDVDGKRIEEDGSQHKKEPKLNVK 355
Query: 325 SALSAAFAKYADKIGK 340
SALSAAFAKYADKI K
Sbjct: 356 SALSAAFAKYADKIAK 371
>gi|15229933|ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
gi|55976606|sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1;
Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
7
gi|6729031|gb|AAF27027.1|AC009177_17 putative nucleotide repair protein [Arabidopsis thaliana]
gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis thaliana]
gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21435979|gb|AAM51569.1| AT3g05210/T12H1_18 [Arabidopsis thaliana]
gi|21618171|gb|AAM67221.1| putative nucleotide repair protein [Arabidopsis thaliana]
gi|332640684|gb|AEE74205.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
Length = 410
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 198/410 (48%), Positives = 249/410 (60%), Gaps = 86/410 (20%)
Query: 34 MENEEQNNESAKAQPPQNKKK----TIITIPSYQEVINAT---NPPQNLFTPSQSFSQAF 86
M NE+ + E +++ Q +K +I +PSYQEV+ ++ + P +LF PSQSFSQAF
Sbjct: 1 MANEDDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAF 60
Query: 87 SFIKSSEFYNPPPPPPANPPTTS-----QNPTLSQGGEQNVGTASAS------ASSSQSI 135
+F+KSS+ Y+PPPP A ++ Q P S Q G +S+S + S +
Sbjct: 61 AFVKSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTT 120
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVG 173
Q+RNAILVS RQKGNPLLK+IRNV+W F+D++ C DYL
Sbjct: 121 QNRNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYF 180
Query: 174 Q-----------------------------------NSCALY--LSLEECGRYLETIKVY 196
+ + C L S+ EC RYLETIKVY
Sbjct: 181 RIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVY 240
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
ENKPADLIQGQMDTDYLSRL H+LTS+R VNK+DVVTLGSTFGSL+HI+DASMEDLARCP
Sbjct: 241 ENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCP 300
Query: 257 GIGERKVKRLYDTFHEPFKRVVSSH-----PPIPETPSQKDVERSSVNEVTEVEKDTEDV 311
GIGERKVKRLYDTFHEPFKR SS+ PPIPE P +KDV +S V E E ED
Sbjct: 301 GIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDV--NSEEPVEEDEDFVEDS 358
Query: 312 NKRRKK--ETESTVKSALSAAFAKYADKIGKKKNRSSQVGETSVSNSGTE 359
KR+KK E E TVK+ALSA FA+Y+D++ KKK + + T+ S++ T
Sbjct: 359 RKRKKKEPEPEKTVKTALSAVFARYSDRLSKKKEKQKEKDTTTASDAETH 408
>gi|297829042|ref|XP_002882403.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
gi|297328243|gb|EFH58662.1| hypothetical protein ARALYDRAFT_477808 [Arabidopsis lyrata subsp.
lyrata]
Length = 407
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 193/386 (50%), Positives = 239/386 (61%), Gaps = 83/386 (21%)
Query: 34 MENEEQNNESAKAQPPQNKKK----TIITIPSYQEVINAT---NPPQNLFTPSQSFSQAF 86
M NE+ + E +++ Q KK II +PSYQEVI ++ + P +LF PSQSFSQAF
Sbjct: 1 MANEDDDGEKSRSLHQQIAKKPKTQIIIGVPSYQEVIESSQTKSTPPSLFKPSQSFSQAF 60
Query: 87 SFIKSSEFYNPPPPPPANPPT-----TSQNPTLSQGGEQNVGTASASASSSQSI-----Q 136
+F+KSS+ Y+PPP A + SQ P SQ + + ++S++ ++ S+ Q
Sbjct: 61 AFVKSSDVYSPPPSSSAASSSSQPPGASQVPNSSQPLQTDGASSSSTPVATGSLPSNTTQ 120
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ 174
+RNAILVS RQKGNPLLK+IRNV+W F+D++ C DYL +
Sbjct: 121 TRNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQSSCALYLSLRYHLLHPDYLYFR 180
Query: 175 -----------------------------------NSCALY--LSLEECGRYLETIKVYE 197
+ C L S+ EC RYLETIKVYE
Sbjct: 181 IRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYE 240
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
NKPADLIQGQMDTDYLSRL H+LTS+R VNK+DVVTLGSTFGSL+HI+DASMEDLARCPG
Sbjct: 241 NKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPG 300
Query: 258 IGERKVKRLYDTFHEPFKRVVSSH-----PPIPETPSQKDVERSSVNEVTEVEKDTEDVN 312
IGERKV+RLYDTFHEPFKR SS+ P IPE P QK+V SS V E E ED
Sbjct: 301 IGERKVRRLYDTFHEPFKRATSSYPSVVEPTIPEAPVQKNV--SSKEPVVEDEDFVEDSR 358
Query: 313 KRRKKETESTVKSALSAAFAKYADKI 338
KR+KKE E TVK+ALSA FA+Y+DK+
Sbjct: 359 KRKKKEPEKTVKTALSAVFARYSDKL 384
>gi|242033937|ref|XP_002464363.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
gi|241918217|gb|EER91361.1| hypothetical protein SORBIDRAFT_01g016980 [Sorghum bicolor]
Length = 397
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 173/397 (43%), Positives = 222/397 (55%), Gaps = 105/397 (26%)
Query: 48 PPQNK-KKTIITIPSYQEVIN-----------ATNPP------------QNLFTPSQSFS 83
PP+ + K +I IPSYQEV + NPP + + S SFS
Sbjct: 10 PPEGQPGKNLIKIPSYQEVFGTGASSSSSKPASYNPPLASSGGTAAAAASSSSSSSGSFS 69
Query: 84 QAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILV 143
QAFSF+KSSEFY S P ++ S+ + QS+NAILV
Sbjct: 70 QAFSFLKSSEFY-------------SPPPPPPPQPTTTTPRPPQASPSAPTRQSKNAILV 116
Query: 144 SQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ------- 174
S RQ+GNPLLK+IRN RW FADVV C DYL +
Sbjct: 117 SHRQRGNPLLKHIRNARWTFADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIRELQKN 176
Query: 175 ----------------------------NSCALY--LSLEECGRYLETIKVYENKPADLI 204
+ C L SLEECGRYLETIKVYENKPAD+I
Sbjct: 177 FRLRVILCHVDVEDVIKPLHEITRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADII 236
Query: 205 QGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVK 264
+ MD DYLSRL+H+LTS+R VNKTDVVTLGS+FGSLS IM+ASME+LARCPGIGERKVK
Sbjct: 237 REHMDNDYLSRLSHSLTSIRHVNKTDVVTLGSSFGSLSQIMNASMEELARCPGIGERKVK 296
Query: 265 RLYDTFHEPFKRVVSSHP--PIPETPSQKDVER--SSVNEVTEVEKDTEDVNKRRKKETE 320
RLYDTFHEPFKR VS+ P +P+TP ++ + SS ++ + + D K++K
Sbjct: 297 RLYDTFHEPFKR-VSARPNLVVPDTPDREKAKGQPSSTDDSLQDAVEKPDAPKKKKG--- 352
Query: 321 STVKSALSAAFAKYADKI-GKKKNRSSQVGETSVSNS 356
S V+SAL+AAFAKY++KI + + +++ GE++ S++
Sbjct: 353 SDVRSALTAAFAKYSEKIRSQGHDAANEAGESTSSST 389
>gi|115482968|ref|NP_001065077.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|78708916|gb|ABB47891.1| DNA excision repair protein ERCC-1, putative, expressed [Oryza
sativa Japonica Group]
gi|113639686|dbj|BAF26991.1| Os10g0518900 [Oryza sativa Japonica Group]
gi|215697952|dbj|BAG92132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 387
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 217/390 (55%), Gaps = 108/390 (27%)
Query: 54 KTIITIPSYQEVINAT----------NPP----QNLFTPSQSFSQAFSFIKSSEFYNPPP 99
K +I IPSYQEV + NPP + + S SFSQAFSF+KS+EFY
Sbjct: 22 KNLIKIPSYQEVFGSGASSSAAPPSYNPPPTTAASSSSSSSSFSQAFSFLKSTEFY---- 77
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
S P Q AS++A + +NAILVS RQKGNPLLK+IRN
Sbjct: 78 ---------SPPPPPPQTTTPRPPQASSAAQAP-----KNAILVSHRQKGNPLLKHIRNA 123
Query: 160 RWAFADVV---------C-------------DYLVGQ----------------------- 174
RW +AD+V C DYL +
Sbjct: 124 RWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVV 183
Query: 175 ------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
+ C L SLEECGRYLETIKVYENK AD I+ MD DYLSRLTHAL
Sbjct: 184 KPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHAL 243
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSS 280
TS+R VNKTDVVTLGS+FGSLS +M+ASME+LARCPGIGERKVKRL+DTFHEPFKR VSS
Sbjct: 244 TSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKR-VSS 302
Query: 281 HPPI--PETPSQKDV--ERSSVNEVTE--VEKDTEDVNKRRKKETESTVKSALSAAFAKY 334
P I P+TP ++ + SS N+ + VEK VNK+ S V+SAL+ AFAKY
Sbjct: 303 RPNIVVPDTPDREKASGQPSSTNDGAQDAVEKPDASVNKK-----SSNVRSALTEAFAKY 357
Query: 335 ADKIGKKKNRSSQVGETSVSNSGTENSNSG 364
++KI + +NR S T+V+ GT S G
Sbjct: 358 SEKI-RNQNRDS----TNVAGEGTSKSTMG 382
>gi|222613143|gb|EEE51275.1| hypothetical protein OsJ_32175 [Oryza sativa Japonica Group]
Length = 430
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/390 (46%), Positives = 217/390 (55%), Gaps = 108/390 (27%)
Query: 54 KTIITIPSYQEVINAT----------NPP----QNLFTPSQSFSQAFSFIKSSEFYNPPP 99
K +I IPSYQEV + NPP + + S SFSQAFSF+KS+EFY
Sbjct: 65 KNLIKIPSYQEVFGSGASSSAAPPSYNPPPTTAASSSSSSSSFSQAFSFLKSTEFY---- 120
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
S P Q AS++A + +NAILVS RQKGNPLLK+IRN
Sbjct: 121 ---------SPPPPPPQTTTPRPPQASSAAQAP-----KNAILVSHRQKGNPLLKHIRNA 166
Query: 160 RWAFADVV---------C-------------DYLVGQ----------------------- 174
RW +AD+V C DYL +
Sbjct: 167 RWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVV 226
Query: 175 ------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
+ C L SLEECGRYLETIKVYENK AD I+ MD DYLSRLTHAL
Sbjct: 227 KPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHAL 286
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSS 280
TS+R VNKTDVVTLGS+FGSLS +M+ASME+LARCPGIGERKVKRL+DTFHEPFKR VSS
Sbjct: 287 TSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKR-VSS 345
Query: 281 HPPI--PETPSQKDV--ERSSVNEVTE--VEKDTEDVNKRRKKETESTVKSALSAAFAKY 334
P I P+TP ++ + SS N+ + VEK VNK+ S V+SAL+ AFAKY
Sbjct: 346 RPNIVVPDTPDREKASGQPSSTNDGAQDAVEKPDASVNKK-----SSNVRSALTEAFAKY 400
Query: 335 ADKIGKKKNRSSQVGETSVSNSGTENSNSG 364
++KI + +NR S T+V+ GT S G
Sbjct: 401 SEKI-RNQNRDS----TNVAGEGTSKSTMG 425
>gi|356574927|ref|XP_003555594.1| PREDICTED: LOW QUALITY PROTEIN: DNA excision repair protein
ERCC-1-like [Glycine max]
Length = 264
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 162/272 (59%), Gaps = 87/272 (31%)
Query: 148 KGNPLLKYIRNVRWAFADVVC----------------------DYL-------------- 171
KGNPLLK+IRNVRWAFADVVC DYL
Sbjct: 8 KGNPLLKHIRNVRWAFADVVCDYLLGQSSCALYLSLRYHLLHPDYLFYRIRKLQKNFKLR 67
Query: 172 -----VG----------------QNSCALY--LSLEECGRYLETIKVYENKPADLIQGQM 208
VG + C L SLEECGRYLETIKV ENKPAD+IQGQM
Sbjct: 68 VVLCHVGVEDVIKPLLEVTKTALLHDCTLLCGWSLEECGRYLETIKVXENKPADIIQGQM 127
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI-GERKVKRLY 267
DTDYLSRLTHALT+VR VNKTDVVTLG+TFG L +IM ASMEDLARCPGI GERKVKRL+
Sbjct: 128 DTDYLSRLTHALTTVRHVNKTDVVTLGTTFGYLCNIMGASMEDLARCPGIVGERKVKRLF 187
Query: 268 DTFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNK--RRKKETESTVKS 325
DTFHEPFK V SS IPET Q NK KKE E TVKS
Sbjct: 188 DTFHEPFKHVESSRQAIPETSVQ---------------------NKPASPKKELEVTVKS 226
Query: 326 ALSAAFAKYADKIGKKKNRSSQV---GETSVS 354
ALSAAFAKY+ ++GK+K+ +SQV GE+ +S
Sbjct: 227 ALSAAFAKYSGRVGKRKS-TSQVEEKGESIIS 257
>gi|218184890|gb|EEC67317.1| hypothetical protein OsI_34337 [Oryza sativa Indica Group]
Length = 430
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 215/390 (55%), Gaps = 108/390 (27%)
Query: 54 KTIITIPSYQEVINA-----TNPPQNLFTPS---------QSFSQAFSFIKSSEFYNPPP 99
K +I IPSYQEV + PP P+ SFSQAFSF+KS+EFY
Sbjct: 65 KNLIKIPSYQEVFGSGASSSAAPPSYNPAPTTAASSSSSSSSFSQAFSFLKSTEFY---- 120
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
S P Q AS++A + +NAILVS RQKGNPLLK+IRN
Sbjct: 121 ---------SPPPPPPQTTTPRPPQASSAAQAP-----KNAILVSHRQKGNPLLKHIRNA 166
Query: 160 RWAFADVV---------C-------------DYLVGQ----------------------- 174
RW +AD+V C DYL +
Sbjct: 167 RWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVV 226
Query: 175 ------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
+ C L SLEECGRYLETIKVYENK AD I+ M+ DYLSRLTHAL
Sbjct: 227 KPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMENDYLSRLTHAL 286
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSS 280
TS+R VNKTDVVTLGS+FGSLS +M+ASME+LARCPGIGERKVKRL+DTFHEPFKR VSS
Sbjct: 287 TSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKR-VSS 345
Query: 281 HPPI--PETPSQKDV--ERSSVNEVTE--VEKDTEDVNKRRKKETESTVKSALSAAFAKY 334
P I P+TP ++ + SS N+ + VEK VNK+ S V+SAL+ AFAKY
Sbjct: 346 RPNIVVPDTPDREKASGQPSSTNDGAQDAVEKPDASVNKK-----SSNVRSALTEAFAKY 400
Query: 335 ADKIGKKKNRSSQVGETSVSNSGTENSNSG 364
++KI + +NR S T+V+ GT S G
Sbjct: 401 SEKI-RNQNRDS----TNVAGEGTSKSTMG 425
>gi|357147056|ref|XP_003574205.1| PREDICTED: DNA excision repair protein ERCC-1-like [Brachypodium
distachyon]
Length = 391
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 173/406 (42%), Positives = 211/406 (51%), Gaps = 120/406 (29%)
Query: 54 KTIITIPSYQEVIN---------ATNPPQNLFTPS------------QSFSQAFSFIKSS 92
K +I IPSYQEV ++ PP + P+ SFS+AFSF+KSS
Sbjct: 14 KNLIKIPSYQEVFGNGVSSSSSSSSKPPS--YNPTLPSAAVGSSSASSSFSEAFSFLKSS 71
Query: 93 EFYN----------PPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAIL 142
EFY+ P PP A P S ++QS+N IL
Sbjct: 72 EFYSPPPPPPHPSTAPRPPLAGP-------------------------SRPAVQSKNTIL 106
Query: 143 VSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ------ 174
VS RQKGNPLLK+IRN RW+FAD+V C DYL +
Sbjct: 107 VSNRQKGNPLLKHIRNARWSFADIVPDYVIGQSSCALYISLRYHLLHPDYLYYRIRELQK 166
Query: 175 -----------------------------NSCALY--LSLEECGRYLETIKVYENKPADL 203
+ C L SLEECGRYLETIKV+ENKPAD
Sbjct: 167 DFKLRVILCHIDIEDVVKPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVFENKPADS 226
Query: 204 IQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKV 263
I+ D DYLSRLTHALTS+R VNKTDVVTLGSTFGSLS IMD+SME+LARCPGIGERKV
Sbjct: 227 IREHTDNDYLSRLTHALTSIRRVNKTDVVTLGSTFGSLSRIMDSSMEELARCPGIGERKV 286
Query: 264 KRLYDTFHEPFKRVVSS-HPPIPETPSQKDVE-RSSVNEVTEVEKDTEDVNKRRKKETES 321
KR+YDTFHEPFKRV + +P TP +K V + S V + E++ K T
Sbjct: 287 KRIYDTFHEPFKRVTPRPNLLVPLTPDEKKVSGQPSSTNVGMPDPGAENLGASNNK-TGP 345
Query: 322 TVKSALSAAFAKYADKIGKKKNRSSQVGETSVSNSGTENSNSGQPD 367
VKSAL+AAFAKY++KI ++ ++ S+S E + Q D
Sbjct: 346 DVKSALTAAFAKYSEKIRRQGRDAAHGAGEGSSSSTMEGGKTKQID 391
>gi|10122039|gb|AAG13428.1|AC051634_9 putative nucleotide repair protein [Oryza sativa Japonica Group]
Length = 395
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 174/372 (46%), Positives = 209/372 (56%), Gaps = 104/372 (27%)
Query: 54 KTIITIPSYQEVINA----------TNPP----QNLFTPSQSFSQAFSFIKSSEFYNPPP 99
K +I IPSYQEV + NPP + + S SFSQAFSF+KS+EFY
Sbjct: 22 KNLIKIPSYQEVFGSGASSSAAPPSYNPPPTTAASSSSSSSSFSQAFSFLKSTEFY---- 77
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
S P Q AS++A + +NAILVS RQKGNPLLK+IRN
Sbjct: 78 ---------SPPPPPPQTTTPRPPQASSAAQAP-----KNAILVSHRQKGNPLLKHIRNA 123
Query: 160 RWAFADVV---------C-------------DYLVGQ----------------------- 174
RW +AD+V C DYL +
Sbjct: 124 RWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYRIRELQKNFKLRVILCHIDVEDVV 183
Query: 175 ------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
+ C L SLEECGRYLETIKVYENK AD I+ MD DYLSRLTHAL
Sbjct: 184 KPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVYENKSADSIREHMDNDYLSRLTHAL 243
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSS 280
TS+R VNKTDVVTLGS+FGSLS +M+ASME+LARCPGIGERKVKRL+DTFHEPFKRV SS
Sbjct: 244 TSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGIGERKVKRLHDTFHEPFKRV-SS 302
Query: 281 HPPI--PETPSQKDV--ERSSVNEVTE--VEKDTEDVNKRRKKETESTVKSALSAAFAKY 334
P I P+TP ++ + SS N+ + VEK VNK+ S V+SAL+ AFAKY
Sbjct: 303 RPNIVVPDTPDREKASGQPSSTNDGAQDAVEKPDASVNKK-----SSNVRSALTEAFAKY 357
Query: 335 ADKIGKKKNRSS 346
++KI + +NR S
Sbjct: 358 SEKI-RNQNRDS 368
>gi|212721946|ref|NP_001131279.1| uncharacterized protein LOC100192592 [Zea mays]
gi|194691068|gb|ACF79618.1| unknown [Zea mays]
gi|414870731|tpg|DAA49288.1| TPA: mating-type switching protein swi10 [Zea mays]
Length = 397
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 216/404 (53%), Gaps = 99/404 (24%)
Query: 45 KAQPPQNKKKTIITIPSYQEVIN-----------ATNPP---------QNLFTPSQSFSQ 84
+A P K +I IPSYQEV + NPP + + S SFSQ
Sbjct: 8 QAPPESQPGKNLIKIPSYQEVFGTGASTSSSKPPSYNPPVATSAAAAASSSSSSSGSFSQ 67
Query: 85 AFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVS 144
AFSF+KSSEFY + P AS SA + QS +N+ILVS
Sbjct: 68 AFSFLKSSEFY-----------SPPPPPPPQPTTTPRPTQASPSAPTPQS---KNSILVS 113
Query: 145 QRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ-------- 174
RQ+GNPLLK+IRN RW FADVV C DYL +
Sbjct: 114 HRQRGNPLLKHIRNARWTFADVVPDYVLGQSSCALYLSIRYHLLHPDYLYYRIRELQKNF 173
Query: 175 ---------------------------NSCALY--LSLEECGRYLETIKVYENKPADLIQ 205
+ C L SLEECGRYLETIKVYENKPAD I+
Sbjct: 174 RLRVILCHVDVEDVIKPLHEITRTALLHDCTLLCGWSLEECGRYLETIKVYENKPADSIR 233
Query: 206 GQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKR 265
MD DYLSRLTH LTS+R VNKTDVVTLGS+FGSLS IM+ SM++LARCPGIGERKV+R
Sbjct: 234 EHMDNDYLSRLTHGLTSIRHVNKTDVVTLGSSFGSLSQIMNGSMDELARCPGIGERKVRR 293
Query: 266 LYDTFHEPFKRVVSSHPP---IPETPSQKDVE-RSSVNEVTEVEKDTEDVNKRRKKETES 321
LYDTFHEPFKRV + P +P+TP ++ + + S + + ++ E + +K + S
Sbjct: 294 LYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQPSSTDGSSLQDAVEKPDASKKTKKGS 353
Query: 322 TVKSALSAAFAKYADKI-GKKKNRSSQVGETSVSNSGTENSNSG 364
V+SAL+ AFAKY++KI + ++ ++ GE S S E +G
Sbjct: 354 DVRSALTVAFAKYSEKIRSQGRDAPNEAGE-STGGSTVEAERAG 396
>gi|326512966|dbj|BAK03390.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 177/303 (58%), Gaps = 69/303 (22%)
Query: 127 ASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C--------- 168
A A+++ S QS+N+ILVS RQKGNPLLK+IRN RW FAD+V C
Sbjct: 93 AGATTTPS-QSKNSILVSNRQKGNPLLKHIRNARWTFADIVPDYVIGQSSCALYISLRYH 151
Query: 169 ----DYLVGQ-----------------------------------NSCALY--LSLEECG 187
DYL + + C L SLEECG
Sbjct: 152 LLHPDYLYYRIRELQKNFKLRVILCHIDIEDVVKPLHEITRTSLLHDCTLLCGWSLEECG 211
Query: 188 RYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247
RYLETIKV+ENKPAD I+ D DYLSR THALTS+R VNKTDV+TLGS+FGSLS IMDA
Sbjct: 212 RYLETIKVFENKPADSIREHTDNDYLSRFTHALTSIRRVNKTDVITLGSSFGSLSRIMDA 271
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPFKRVV-SSHPPIPETPSQKDV--ERSSVNEVTEV 304
SME+LARCPGIGERKVKRL+DTFHEPFKRV + +P+TP ++ + SS N+ T
Sbjct: 272 SMEELARCPGIGERKVKRLHDTFHEPFKRVTPRPNLVVPDTPDREKASGQPSSTNDGTPE 331
Query: 305 EKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKNRSSQVGETSVSNSGTENSNSG 364
+ DT K + S VKSAL+AAFAKY++K+ + ++ S+S E +
Sbjct: 332 KSDTS------KNKKGSDVKSALTAAFAKYSEKVRSQGRDAAHEAGEGPSSSTMEGDKTK 385
Query: 365 QPD 367
Q D
Sbjct: 386 QLD 388
>gi|195657333|gb|ACG48134.1| mating-type switching protein swi10 [Zea mays]
Length = 396
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 175/293 (59%), Gaps = 65/293 (22%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVG 173
QS+N+ILVS RQ+GNPLLK+IRN RW FADVV C DYL
Sbjct: 104 QSKNSILVSHRQRGNPLLKHIRNARWTFADVVPDYVLGQSSCALYLSIRYHLLHPDYLYY 163
Query: 174 Q-----------------------------------NSCALY--LSLEECGRYLETIKVY 196
+ + C L SLEECGRYLETIKVY
Sbjct: 164 RIREMQKNFRLRVILCHVDVEDVIKPLHEITRTALLHDCTLLCGWSLEECGRYLETIKVY 223
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
ENKPAD I+ MD DYLSRLTH LTS+R VNKTDVVTLGS+FGSLS IM+ SM++LARCP
Sbjct: 224 ENKPADSIREHMDNDYLSRLTHGLTSIRHVNKTDVVTLGSSFGSLSQIMNGSMDELARCP 283
Query: 257 GIGERKVKRLYDTFHEPFKRVVS---SHPPIPETPSQKDVE-RSSVNEVTEVEKDTEDVN 312
GIGERKV+RLYDTFHEPFKRV + S+ +P+TP ++ + + S + + ++ E +
Sbjct: 284 GIGERKVRRLYDTFHEPFKRVPARPRSNLVVPDTPDREKAKGQPSSTDGSSLQDAVEKPD 343
Query: 313 KRRKKETESTVKSALSAAFAKYADKI-GKKKNRSSQVGETSVSNSGTENSNSG 364
+K + S V+SA + AFAKY++KI + ++ +++ GE S S E +G
Sbjct: 344 ASKKTKKGSDVRSAFTVAFAKYSEKIRSQGRDAANEAGE-GTSGSTVEAERAG 395
>gi|3297891|emb|CAA05781.1| nucleotide repair protein [Lilium longiflorum]
Length = 278
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 146/243 (60%), Gaps = 68/243 (27%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVC----------------------DYLVG 173
Q+RNAILVS RQKGNPLLK+IRNV+W FAD+VC DYL
Sbjct: 28 QNRNAILVSHRQKGNPLLKHIRNVKWVFADIVCDYLVGQSSCALYLSLRYHLLHPDYLYY 87
Query: 174 Q-----------------------------------NSCALY--LSLEECGRYLETIKVY 196
+ + C L SLEECGRYLETIKVY
Sbjct: 88 RIRELQKNFKLRVVLCHVDVEDVVKPLLEVTRTAMLHDCTLLCGWSLEECGRYLETIKVY 147
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
ENKPAD I+ QMDTDYLSRLT ALTSVR VNKTD VTLG+ FGSLS IMDAS+EDLARCP
Sbjct: 148 ENKPADSIREQMDTDYLSRLTQALTSVRHVNKTDAVTLGTAFGSLSGIMDASLEDLARCP 207
Query: 257 GIGERKVKRLYDTFHEPFKRVVSSHPPI------PETPSQKDVERSSVNEVTEVEKDTED 310
GIGERKVKRL+DTFHEPF+R VS+ P + P+ S +++ + E EVE + +
Sbjct: 208 GIGERKVKRLHDTFHEPFRR-VSNRPAVAYLKLPPKMLSAEEI--LATKEGVEVEGEKAN 264
Query: 311 VNK 313
+K
Sbjct: 265 TSK 267
>gi|168034367|ref|XP_001769684.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679033|gb|EDQ65485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 285
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 164/285 (57%), Gaps = 65/285 (22%)
Query: 54 KTIITIPSYQEVINATNP--PQNLFTPSQSFSQ-AFSFIKSSEFYNPPPPPPANPPTTSQ 110
K+ + IPS+ EV+ + P P + F PS S + AFSF++ +EFY PPP P +
Sbjct: 2 KSFLHIPSHAEVLERSRPQAPPSFFRPSSSAAPPAFSFVRQTEFYTPPPAAPTPTVPVAP 61
Query: 111 NPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVV--- 167
+ + G VG+ S A + + Q+RNAILV++RQ GNP+LKYIRNVRW F D+V
Sbjct: 62 SEGVPGNG---VGSRSQEALPTVNSQARNAILVNRRQTGNPVLKYIRNVRWVFGDIVPDY 118
Query: 168 ------C-------------DYLVGQ---------------------------------- 174
C DYL +
Sbjct: 119 LLGQSTCALYISLRYHLLHPDYLYFRIRELQKGFRLRVVLCHVDLEDVIKPLHEVIKTSL 178
Query: 175 -NSCALY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
+ C+L SLEEC RYLET+K YE+KPAD IQ + D DY+SR+T ALT+VR VNKTDV
Sbjct: 179 LHDCSLLCAWSLEECARYLETLKTYEHKPADNIQERTDNDYISRMTSALTTVRHVNKTDV 238
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+TLGSTF +L+ I ASMEDLARCPGIGERKVKRLYD FHEPF+R
Sbjct: 239 LTLGSTFETLTGIFSASMEDLARCPGIGERKVKRLYDAFHEPFRR 283
>gi|168034363|ref|XP_001769682.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679031|gb|EDQ65483.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 279
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 161/280 (57%), Gaps = 65/280 (23%)
Query: 59 IPSYQEVINATNP--PQNLFTPSQSFSQ-AFSFIKSSEFYNPPPPPPANPPTTSQNPTLS 115
IPS+ EV+ + P P + F PS S + AFSF++ +EFY PPP P + + +
Sbjct: 1 IPSHAEVLERSRPQAPPSFFRPSSSAAPPAFSFVRQTEFYTPPPAAPTPTVPVAPSEGVP 60
Query: 116 QGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVV-------- 167
G VG+ S A + + Q+RNAILV++RQ GNP+LKYIRNVRW F D+V
Sbjct: 61 GNG---VGSRSQEALPTVNSQARNAILVNRRQTGNPVLKYIRNVRWVFGDIVPDYLLGQS 117
Query: 168 -C-------------DYLVGQ-----------------------------------NSCA 178
C DYL + + C+
Sbjct: 118 TCALYISLRYHLLHPDYLYFRIRELQKGFRLRVVLCHVDLEDVIKPLHEVIKTSLLHDCS 177
Query: 179 LY--LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
L SLEEC RYLET+K YE+KPAD IQ + D DY+SR+T ALT+VR VNKTDV+TLGS
Sbjct: 178 LLCAWSLEECARYLETLKTYEHKPADNIQERTDNDYISRMTSALTTVRHVNKTDVLTLGS 237
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
TF +L+ I ASMEDLARCPGIGERKVKRLYD FHEPF+R
Sbjct: 238 TFETLTGIFSASMEDLARCPGIGERKVKRLYDAFHEPFRR 277
>gi|302782932|ref|XP_002973239.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
gi|300158992|gb|EFJ25613.1| hypothetical protein SELMODRAFT_98787 [Selaginella moellendorffii]
Length = 232
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/199 (54%), Positives = 124/199 (62%), Gaps = 58/199 (29%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVG 173
QSRNAILVS+RQ+GNP+LK+IRNVRW F D+V C DYL
Sbjct: 14 QSRNAILVSRRQQGNPVLKFIRNVRWTFDDIVPDYVLGQSSCALYLSIRYHLLHPDYLYF 73
Query: 174 Q----------------------------------NSCALY--LSLEECGRYLETIKVYE 197
+ + C+L SLEEC RYLETIK+YE
Sbjct: 74 RIRELQKNFRLRVVLCYVDEDVIKPLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYE 133
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
NKPAD IQ + D DYLSRLT ALTSVR +NKTDVVTLGSTFGS++ +M ASMEDLARCPG
Sbjct: 134 NKPADNIQERTDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPG 193
Query: 258 IGERKVKRLYDTFHEPFKR 276
IGERKVKRLYD FHEPF+R
Sbjct: 194 IGERKVKRLYDAFHEPFRR 212
>gi|302823991|ref|XP_002993643.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
gi|300138571|gb|EFJ05335.1| hypothetical protein SELMODRAFT_137345 [Selaginella moellendorffii]
Length = 209
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/189 (51%), Positives = 113/189 (59%), Gaps = 59/189 (31%)
Query: 147 QKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ---------- 174
Q+GNP+LK+IRNVRW F D+V C DYL +
Sbjct: 1 QQGNPVLKFIRNVRWTFDDIVPDYVLGQSSCALYLSIRYHLLHPDYLYFRIRELQKNFRL 60
Query: 175 -------------------------NSCALY--LSLEECGRYLETIKVYENKPADLIQGQ 207
+ C+L SLEEC RYLETIK+YENKPAD IQ +
Sbjct: 61 RVVLCYVDVEDVIKPLHEVTKTALLHDCSLLCAWSLEECARYLETIKMYENKPADNIQER 120
Query: 208 MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
D DYLSRLT ALTSVR +NKTDVVTLGSTFGS++ +M ASMEDLARCPGIGERKVKRL+
Sbjct: 121 TDQDYLSRLTSALTSVRHINKTDVVTLGSTFGSMASVMSASMEDLARCPGIGERKVKRLH 180
Query: 268 DTFHEPFKR 276
D FHEPF+R
Sbjct: 181 DAFHEPFRR 189
>gi|414870732|tpg|DAA49289.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 162
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 102/135 (75%), Gaps = 4/135 (2%)
Query: 208 MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
MD DYLSRLTH LTS+R VNKTDVVTLGS+FGSLS IM+ SM++LARCPGIGERKV+RLY
Sbjct: 1 MDNDYLSRLTHGLTSIRHVNKTDVVTLGSSFGSLSQIMNGSMDELARCPGIGERKVRRLY 60
Query: 268 DTFHEPFKRVVSSHPP---IPETPSQKDVE-RSSVNEVTEVEKDTEDVNKRRKKETESTV 323
DTFHEPFKRV + P +P+TP ++ + + S + + ++ E + +K + S V
Sbjct: 61 DTFHEPFKRVPARPRPNLVVPDTPDREKAKGQPSSTDGSSLQDAVEKPDASKKTKKGSDV 120
Query: 324 KSALSAAFAKYADKI 338
+SAL+ AFAKY++KI
Sbjct: 121 RSALTVAFAKYSEKI 135
>gi|444730739|gb|ELW71113.1| DNA excision repair protein ERCC-1 [Tupaia chinensis]
Length = 298
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 107/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NTIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 NLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D+LSR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFLSRVTECLTTVKSVNKTDSQTLLATFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|61357240|gb|AAX41357.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKEQAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|189054601|dbj|BAG37398.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|297705160|ref|XP_002829451.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pongo
abelii]
Length = 297
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|4503599|ref|NP_001974.1| DNA excision repair protein ERCC-1 isoform 2 [Homo sapiens]
gi|302632548|ref|NP_001181860.1| DNA excision repair protein ERCC-1 [Pan troglodytes]
gi|397493347|ref|XP_003817569.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Pan
paniscus]
gi|119538|sp|P07992.1|ERCC1_HUMAN RecName: Full=DNA excision repair protein ERCC-1
gi|21105797|gb|AAM34796.1|AF512555_1 excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|182174|gb|AAA52394.1| excision repair protein [Homo sapiens]
gi|182177|gb|AAA35810.1| excision repair protein [Homo sapiens]
gi|2583146|gb|AAC16253.1| excision repair protein [Homo sapiens]
gi|14286266|gb|AAH08930.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|54696474|gb|AAV38609.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
gi|60818953|gb|AAX36483.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61354943|gb|AAX41079.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61357235|gb|AAX41356.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61363050|gb|AAX42326.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|119577752|gb|EAW57348.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|119577754|gb|EAW57350.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_a [Homo sapiens]
gi|123990970|gb|ABM83928.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|123999343|gb|ABM87247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|410220356|gb|JAA07397.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220358|gb|JAA07398.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220362|gb|JAA07400.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410220364|gb|JAA07401.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254810|gb|JAA15372.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254812|gb|JAA15373.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254818|gb|JAA15376.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295290|gb|JAA26245.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295292|gb|JAA26246.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295298|gb|JAA26249.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335881|gb|JAA36887.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335883|gb|JAA36888.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335887|gb|JAA36890.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335889|gb|JAA36891.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|225908|prf||1403276A DNA repair gene
Length = 297
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|60655939|gb|AAX32533.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 297
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|54696472|gb|AAV38608.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [synthetic construct]
gi|60652851|gb|AAX29120.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|60830454|gb|AAX36930.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61365104|gb|AAX42654.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
gi|61367243|gb|AAX42971.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [synthetic construct]
Length = 298
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|426389186|ref|XP_004061005.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Gorilla
gorilla gorilla]
Length = 297
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|402905929|ref|XP_003915760.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 1 [Papio
anubis]
Length = 298
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>gi|348557640|ref|XP_003464627.1| PREDICTED: DNA excision repair protein ERCC-1-like [Cavia
porcellus]
Length = 300
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F +V+ DY+
Sbjct: 101 NSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQ 160
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 161 SLGKNFALRILLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 220
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ +++SR+T LT+V+SVNKTD TL STFGSL +M AS +DLA CPG+G
Sbjct: 221 PADLLMEKLEQNFVSRITECLTTVKSVNKTDSQTLLSTFGSLEQLMAASRQDLALCPGLG 280
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 281 PQKARRLFDVLHEPFLKV 298
>gi|449663991|ref|XP_004205849.1| PREDICTED: uncharacterized protein LOC101236335 [Hydra
magnipapillata]
Length = 446
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 91/294 (30%)
Query: 61 SYQEVINAT--NPPQNLFTPSQSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGG 118
S +++ NAT + +N +SF+ FSF+K ++ Y PP P T++N
Sbjct: 48 SSEKIKNATVIDKKENPGVVGKSFADTFSFLKKTDLYELPPQPKLIEVHTAKNS------ 101
Query: 119 EQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVC---------- 168
NAI+V+ +Q+GNP+LK++ N+ W + D+V
Sbjct: 102 --------------------NAIIVNSKQRGNPILKFVHNIPWEYGDIVADYEIGQTACA 141
Query: 169 ------------DY------LVGQN-----------------------------SCALYL 181
DY L+G +C L L
Sbjct: 142 MFLSLRYHSLNPDYIHDRLQLLGNRYTLRILLVLVDIEKTNASLKKLAKISLLANCTLIL 201
Query: 182 SL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ EE GRYLET K YENKP D++Q ++D DY+S++ LT+V+S++K DV+TL S F
Sbjct: 202 AWSNEEAGRYLETFKTYENKPPDILQERIDQDYVSKMQDILTTVKSISKADVITLLSNFK 261
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR----VVSSHPPIPETPS 289
SL ++ +AS+ +L CPG G +K +RLY+ HEPFKR + SS P T S
Sbjct: 262 SLKNVANASVVELTLCPGFGPKKAQRLYNALHEPFKRDQKKLTSSQSPSKRTSS 315
>gi|431909163|gb|ELK12753.1| DNA excision repair protein ERCC-1 [Pteropus alecto]
Length = 315
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 107/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ-- 174
N+I+VS RQ+GNP+LK++RNV W F DVV C DY+ G+
Sbjct: 117 NSIIVSPRQRGNPVLKFVRNVPWEFGDVVPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 176
Query: 175 ---------------------------------NSCALYLSL--EECGRYLETIKVYENK 199
C L L+ EE GRYLET K YE K
Sbjct: 177 SLGKSFALRVLLVQVDVKDPQRALKDLAKMCILADCTLVLAWSPEEAGRYLETYKAYEQK 236
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 237 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 296
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 297 PQKARRLFDVLHEPFLKV 314
>gi|226442650|ref|NP_001140125.1| DNA excision repair protein ERCC-1 [Salmo salar]
gi|221220050|gb|ACM08686.1| DNA excision repair protein ERCC-1 [Salmo salar]
Length = 383
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 117/232 (50%), Gaps = 69/232 (29%)
Query: 112 PTLSQGGE-QNVGTASASASSSQS---------IQSRNAILVSQRQKGNPLLKYIRNVRW 161
P +++G E Q GT S+ + S N+I+VS RQ+GNP+LK++R+V W
Sbjct: 144 PGVTEGEEGQRAGTEQGEGQGSEGSNILGHPKLVGSGNSIIVSPRQRGNPILKFVRSVPW 203
Query: 162 AFADVVCDY----------------------------LVGQN------------------ 175
F +VV DY L+GQ
Sbjct: 204 EFGEVVPDYVLGQTTCALFLSLRYHNLNPNYIHDRLKLLGQTFTLRVLLVLVDVKDPHHS 263
Query: 176 -----------SCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS 222
C L L+ EE GRYLET K YE KPADL++ ++ DYLS++T LT+
Sbjct: 264 LKELARICIMADCTLILAWSPEEAGRYLETYKSYEKKPADLLKEHVEKDYLSKVTDCLTT 323
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
V+SVNKTD +TL STF SL I+ A+ EDL CPG+G +K +RLYD H+PF
Sbjct: 324 VKSVNKTDSITLLSTFSSLEGIITAAKEDLVLCPGLGPQKARRLYDVLHQPF 375
>gi|410897108|ref|XP_003962041.1| PREDICTED: DNA excision repair protein ERCC-1-like [Takifugu
rubripes]
Length = 349
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 107/199 (53%), Gaps = 59/199 (29%)
Query: 135 IQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY------------------------ 170
+ S ++I+VS RQ+GNP+LKYIR+V W DVV DY
Sbjct: 145 VGSGSSIVVSPRQRGNPILKYIRSVPWEIGDVVPDYVLGQTTCALFLSLRYHNLNPNYIH 204
Query: 171 ----LVGQN-----------------------------SCALYLSL--EECGRYLETIKV 195
L+GQ C L L+ EE GRYLET K
Sbjct: 205 DRLKLLGQTFTLRVLLVQVDVKDPHHALRELARICVMADCTLVLAWSPEEAGRYLETYKS 264
Query: 196 YENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARC 255
YE KPAD ++ Q++ DYLS++T LT+V+S+NKTD +TL STF S+ IM+AS +DL C
Sbjct: 265 YEKKPADTLKEQVEKDYLSKVTECLTTVKSINKTDAITLLSTFSSVEGIMNASKDDLVLC 324
Query: 256 PGIGERKVKRLYDTFHEPF 274
PG+G +K +RLYD FH+PF
Sbjct: 325 PGLGPQKARRLYDVFHKPF 343
>gi|126329589|ref|XP_001365997.1| PREDICTED: DNA excision repair protein ERCC-1-like [Monodelphis
domestica]
Length = 326
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 107/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+ILVS RQ+GNP+LK+IRNV W F ++V DY+
Sbjct: 127 NSILVSPRQRGNPVLKFIRNVPWEFGEIVPDYVLGQSTCALFLSLRYHNLHPNYIHERLQ 186
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 187 GLGKNYALRVLLLQVDVKDPQRALKDLAKMCILADCTLILAWSPEEAGRYLETYKSYEQK 246
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL++ +++ D++SR+T LT+V+SVNKTD TL +TFGSL + AS EDL+ CPG G
Sbjct: 247 PADLLKEKLEQDFVSRVTECLTTVKSVNKTDSQTLLATFGSLEQLTAASQEDLSLCPGFG 306
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D H+PF +V
Sbjct: 307 PQKARRLFDVLHQPFLKV 324
>gi|38112299|gb|AAR11239.1| excision repair protein [Pan troglodytes]
Length = 251
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 106/195 (54%), Gaps = 59/195 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 56 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 115
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 116 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 175
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 176 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 235
Query: 260 ERKVKRLYDTFHEPF 274
+K +RL+D HEPF
Sbjct: 236 PQKARRLFDVLHEPF 250
>gi|187960064|ref|NP_031974.2| DNA excision repair protein ERCC-1 isoform a [Mus musculus]
gi|408360078|sp|P07903.2|ERCC1_MOUSE RecName: Full=DNA excision repair protein ERCC-1
gi|15029977|gb|AAH11224.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
gi|26353238|dbj|BAC40249.1| unnamed protein product [Mus musculus]
gi|74203782|dbj|BAE23112.1| unnamed protein product [Mus musculus]
gi|148691190|gb|EDL23137.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mus musculus]
Length = 298
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 118/226 (52%), Gaps = 65/226 (28%)
Query: 117 GGEQNVGTASASASS---SQSIQS---RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY 170
G V T S A+ SQ++++ N+I+VS RQ+GNP+LK++RNV W F +V+ DY
Sbjct: 71 GAGATVPTGSEPAAGENPSQTLKTGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDY 130
Query: 171 L----------------------------VGQN--------------------------- 175
+ +G+N
Sbjct: 131 VLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCI 190
Query: 176 --SCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD
Sbjct: 191 LADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDS 250
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
TL +TFGSL + AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>gi|50855|emb|CAA30310.1| unnamed protein product [Mus musculus]
Length = 298
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 65/226 (28%)
Query: 117 GGEQNVGTASASASS---SQSIQS---RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY 170
G V T S A+ SQ++++ N+I+VS RQ+GNP+LK++RNV W F +V+ DY
Sbjct: 71 GAGATVPTGSEPAAGENPSQTLKTGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDY 130
Query: 171 L----------------------------VGQN--------------------------- 175
+ +G+N
Sbjct: 131 VLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCI 190
Query: 176 --SCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
C L L S EE GRYLET + YE KPADL+ +++ ++LSR T LT+V+SVNKTD
Sbjct: 191 LADCTLVLAWSAEEAGRYLETYRAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDS 250
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
TL +TFGSL + AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>gi|410982710|ref|XP_003997691.1| PREDICTED: DNA excision repair protein ERCC-1 [Felis catus]
Length = 306
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVGQ-- 174
++I+VS RQ+GNP+LK++RNV W F DV+ C DY+ G+
Sbjct: 107 SSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 166
Query: 175 ---------------------------------NSCALYLSL--EECGRYLETIKVYENK 199
C L L+ EE GRYLET K YE K
Sbjct: 167 SLGKSFALRVLLVQVDVKDPQQALKELAKMCILADCTLVLAWSPEEAGRYLETYKAYEQK 226
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D+++R+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 227 PADLLMEKLEQDFVARVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 286
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 287 PQKARRLFDVLHEPFLKV 304
>gi|157819415|ref|NP_001099698.1| DNA excision repair protein ERCC-1 [Rattus norvegicus]
gi|149056779|gb|EDM08210.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149056780|gb|EDM08211.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 298
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 65/226 (28%)
Query: 117 GGEQNVGTASASA---SSSQSIQS---RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY 170
G V T S A S SQ++++ ++I+VS RQ+GNP+LK++R+V W F +V DY
Sbjct: 71 GAGATVPTGSEPATGDSPSQTLKAGTKSSSIIVSPRQRGNPVLKFVRSVPWEFGEVTPDY 130
Query: 171 L----------------------------VGQN--------------------------- 175
+ +G+N
Sbjct: 131 VLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKICI 190
Query: 176 --SCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD
Sbjct: 191 LADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDS 250
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
TL +TFGSL ++ AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 251 QTLLTTFGSLEQLITASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>gi|395854326|ref|XP_003799647.1| PREDICTED: DNA excision repair protein ERCC-1 [Otolemur garnettii]
Length = 239
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 10/144 (6%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIK---- 194
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL + + I
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQ 158
Query: 195 -VYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLA 253
+ +N ++ Q+D +T LT+V+SVNKTD TL +TFGSL ++ AS EDLA
Sbjct: 159 SLGKNFALRVLLVQVDV-----VTDCLTTVKSVNKTDSQTLLATFGSLEQLIAASREDLA 213
Query: 254 RCPGIGERKVKRLYDTFHEPFKRV 277
CPG+G +K +RL+D HEPF +V
Sbjct: 214 LCPGLGPQKARRLFDVLHEPFFKV 237
>gi|426389188|ref|XP_004061006.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Gorilla
gorilla gorilla]
Length = 225
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 59/189 (31%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYL----------------------------VGQN---- 175
+GNP+LK++RNV W F DV+ DY+ +G+N
Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALR 95
Query: 176 -------------------------SCALYLSL--EECGRYLETIKVYENKPADLIQGQM 208
C L L+ EE GRYLET K YE KPADL+ ++
Sbjct: 96 VLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKL 155
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268
+ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G +K +RL+D
Sbjct: 156 EQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFD 215
Query: 269 TFHEPFKRV 277
HEPF +V
Sbjct: 216 VLHEPFLKV 224
>gi|397493349|ref|XP_003817570.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Pan
paniscus]
gi|193787266|dbj|BAG52472.1| unnamed protein product [Homo sapiens]
Length = 225
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 59/189 (31%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYL----------------------------VGQN---- 175
+GNP+LK++RNV W F DV+ DY+ +G+N
Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALR 95
Query: 176 -------------------------SCALYLSL--EECGRYLETIKVYENKPADLIQGQM 208
C L L+ EE GRYLET K YE KPADL+ ++
Sbjct: 96 VLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKL 155
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268
+ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G +K +RL+D
Sbjct: 156 EQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFD 215
Query: 269 TFHEPFKRV 277
HEPF +V
Sbjct: 216 VLHEPFLKV 224
>gi|402905931|ref|XP_003915761.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 2 [Papio
anubis]
Length = 226
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 100/189 (52%), Gaps = 59/189 (31%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYL----------------------------VGQN---- 175
+GNP+LK++RNV W F DV+ DY+ +G+N
Sbjct: 36 RGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALR 95
Query: 176 -------------------------SCALYLSL--EECGRYLETIKVYENKPADLIQGQM 208
C L L+ EE GRYLET K YE KPADL+ ++
Sbjct: 96 VLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKL 155
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268
+ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G +K +RL+D
Sbjct: 156 EQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFD 215
Query: 269 TFHEPFKRV 277
HEPF +V
Sbjct: 216 VLHEPFLKV 224
>gi|166157967|ref|NP_001107393.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Xenopus (Silurana) tropicalis]
gi|163916074|gb|AAI57332.1| LOC100135224 protein [Xenopus (Silurana) tropicalis]
gi|213625729|gb|AAI71208.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
gi|213627374|gb|AAI71206.1| hypothetical protein LOC100135224 [Xenopus (Silurana) tropicalis]
Length = 268
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 59/207 (28%)
Query: 127 ASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRW---------AFADVVC--------- 168
A+ +++S+ R++I+VS RQ+GN LLKY+RNV W + C
Sbjct: 53 AANQTTKSVGVRSSIIVSTRQRGNSLLKYLRNVPWEFGNIIPDYVLGETCCALFLSLRYH 112
Query: 169 ----DYL------VGQN-----------------------------SCALYLSL--EECG 187
+Y+ +GQ+ C L LS EE
Sbjct: 113 NLNPEYIHLRLRSLGQSFALRVLLVQVDVKDPHFSLKELAKICILSDCTLILSWSPEEAA 172
Query: 188 RYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247
RYLET K YE KPAD+++ + + D +SR+ LT+V+ VNKTD TL +TFG+L + +A
Sbjct: 173 RYLETYKCYEQKPADVLKERTEKDLMSRMAECLTTVKYVNKTDSCTLFTTFGTLFDLANA 232
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPF 274
S EDL+ CPG+G +K KRLYDTFHEPF
Sbjct: 233 SREDLSLCPGLGPQKAKRLYDTFHEPF 259
>gi|355703658|gb|EHH30149.1| hypothetical protein EGK_10755 [Macaca mulatta]
Length = 323
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 100/187 (53%), Gaps = 59/187 (31%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ ++D D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLDQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRL 266
+KV+ L
Sbjct: 279 PQKVRAL 285
>gi|355755947|gb|EHH59694.1| hypothetical protein EGM_09870 [Macaca fascicularis]
Length = 323
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 100/187 (53%), Gaps = 59/187 (31%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ ++D D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLDQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRL 266
+KV+ L
Sbjct: 279 PQKVRAL 285
>gi|320166062|gb|EFW42961.1| excision repair enzyme ERCC-1 [Capsaspora owczarzaki ATCC 30864]
Length = 509
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 89/125 (71%), Gaps = 9/125 (7%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLG 235
+ L S +E RYLET K+YE+KPAD ++ ++DTD+LSR+T LTS++SVNKTDV+TL
Sbjct: 276 TVVLAWSEDEAARYLETYKMYESKPADALKERIDTDFLSRVTDILTSIKSVNKTDVITLL 335
Query: 236 STFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---------KRVVSSHPPIPE 286
STFGSL +I +A+ E L+RCPGIGE KV+R+Y+ FH+PF K VS+ PP+
Sbjct: 336 STFGSLKNIANATPEQLSRCPGIGEHKVRRIYEAFHQPFTPDAVKGASKTSVSTAPPVRS 395
Query: 287 TPSQK 291
+ K
Sbjct: 396 ASTAK 400
>gi|73980826|ref|XP_540176.2| PREDICTED: uncharacterized protein LOC483061 [Canis lupus
familiaris]
Length = 461
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 101/190 (53%), Gaps = 59/190 (31%)
Query: 147 QKGNPLLKYIRNVRWAFADVV---------C-------------DYL------VGQN--- 175
Q+GNP+LK++RNV W F DV+ C DYL +G++
Sbjct: 270 QRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLRYHNLHPDYLHERLQSLGKSFAL 329
Query: 176 --------------------------SCALYLSL--EECGRYLETIKVYENKPADLIQGQ 207
C L L+ EE GRYLET K YE KPA+L+ +
Sbjct: 330 RVLLVQVDVKDPQQALKELAKMCILAYCTLVLAWSPEEAGRYLETYKAYEQKPANLLMEK 389
Query: 208 MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
++ D++SR+T LT+V+SVNKTD TL +TFGSL +M AS EDLA CPG+G +K RL+
Sbjct: 390 LEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLMTASREDLALCPGLGPQKAWRLF 449
Query: 268 DTFHEPFKRV 277
D HEPF +V
Sbjct: 450 DVLHEPFLKV 459
>gi|395529691|ref|XP_003766942.1| PREDICTED: DNA excision repair protein ERCC-1 [Sarcophilus
harrisii]
Length = 472
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 112/228 (49%), Gaps = 64/228 (28%)
Query: 106 PTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFAD 165
P + N L G N G A + S +I VS RQ+GNP+LK+IRNV W F +
Sbjct: 246 PEAAPNLGLPAGDTANQGPQGPKAPTKSS-----SITVSPRQRGNPVLKFIRNVPWEFGE 300
Query: 166 V--------------------------VCDYL--VGQN---------------------- 175
+ + D L +G+N
Sbjct: 301 IVPDYVMGQSTCALFLSLRYHNLHPNYIHDRLQGLGKNYALRVLLLQVDVKDPQRALKEL 360
Query: 176 -------SCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
C L L+ EE GRYLET K YE KPADL++ +++ D++SR+T LT+V+SV
Sbjct: 361 AKMCILADCTLILAWSPEEAGRYLETYKSYEQKPADLLKEKLEQDFVSRVTECLTTVKSV 420
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
NKTD TL +TFGSL + AS +DLA CPG G +K +RL++ H+PF
Sbjct: 421 NKTDSQTLLATFGSLEQLAAASQDDLALCPGFGPQKARRLFEVLHQPF 468
>gi|196016209|ref|XP_002117958.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
gi|190579431|gb|EDV19526.1| hypothetical protein TRIADDRAFT_61989 [Trichoplax adhaerens]
Length = 265
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 122/251 (48%), Gaps = 79/251 (31%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNA 140
SF QAFSFIK S Y E ++S++ S + + N
Sbjct: 20 SFKQAFSFIKDSSHYQ----------------------EIEASSSSSNISLPRQPLNTNC 57
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCD----------YLVGQN--------------- 175
I V+ +Q+GNP+++YI +V + D+V D YL N
Sbjct: 58 ITVNPKQRGNPIIQYITSVPLEYGDIVPDYVLGKTTCALYLRYHNLHPNYIHERLKKLGY 117
Query: 176 ------------------------------SCALYLSL--EECGRYLETIKVYENKPADL 203
C L L+ EE GRYLET K YENKP DL
Sbjct: 118 AFEMRILLVQVDLKDCQQALNELARIAVMADCTLILAWSSEEAGRYLETYKAYENKPPDL 177
Query: 204 IQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKV 263
++ ++D DYLS+LT LT+++SVN+ DV+TL STFGS+ +I+ AS++DLA CPGIG +K
Sbjct: 178 LKEKVDKDYLSKLTDCLTTIKSVNRGDVITLQSTFGSMDNIISASVQDLALCPGIGLQKA 237
Query: 264 KRLYDTFHEPF 274
KR++ F EPF
Sbjct: 238 KRIHALFREPF 248
>gi|42544169|ref|NP_973730.1| DNA excision repair protein ERCC-1 isoform 1 [Homo sapiens]
gi|31127248|gb|AAH52813.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Homo sapiens]
Length = 323
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 100/187 (53%), Gaps = 59/187 (31%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRL 266
+KV+ L
Sbjct: 279 PQKVRAL 285
>gi|402905933|ref|XP_003915762.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Papio
anubis]
Length = 323
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 100/187 (53%), Gaps = 59/187 (31%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRL 266
+KV+ L
Sbjct: 279 PQKVRAL 285
>gi|390479159|ref|XP_002762336.2| PREDICTED: DNA excision repair protein ERCC-1 [Callithrix jacchus]
Length = 238
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 38/208 (18%)
Query: 97 PPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYI 156
PP P A+ PT S+ + GE A S N+I+VS RQ+GNP+LK++
Sbjct: 40 PPGGPEASCPTGSE----TLAGETCNQALKPGAKS-------NSIIVSPRQRGNPVLKFV 88
Query: 157 RNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIK-----VYENKPADLIQGQMDTD 211
RNV W F DV+ DY++GQ++CAL+LSL + + I + +N ++ Q+D
Sbjct: 89 RNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHERLQNLGKNFALRVLLIQVDVK 148
Query: 212 ----------------------YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASM 249
S++T LT+V+SVNKTD TL +TFGSL ++ AS
Sbjct: 149 DPQQALKELAKMCILADCTLILAWSQVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASR 208
Query: 250 EDLARCPGIGERKVKRLYDTFHEPFKRV 277
EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 209 EDLALCPGLGPQKARRLFDVLHEPFLKV 236
>gi|327289261|ref|XP_003229343.1| PREDICTED: DNA excision repair protein ERCC-1-like [Anolis
carolinensis]
Length = 332
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 81/110 (73%), Gaps = 6/110 (5%)
Query: 175 NSCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+SC L L+ EE GRYLET K YE KPADL++ ++D DYLSR+T LTSV+SVNKTD +
Sbjct: 214 SSCTLVLAWSPEEAGRYLETYKAYEQKPADLLKEKVDKDYLSRMTDCLTSVKSVNKTDTL 273
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHP 282
+L S F SL++++ AS EDL+ CPGIG +K KRL+D HEPF + HP
Sbjct: 274 SLLSNFKSLANLVQASKEDLSLCPGIGPQKAKRLFDALHEPFYK----HP 319
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 103 ANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWA 162
A PP + +++G +G S+S + +++I+VS RQ+GNP+LK+IRNV W
Sbjct: 89 AKPPPCEKRNIIAKG----IGETSSSNPVLKPGTKQSSIIVSPRQRGNPVLKFIRNVPWE 144
Query: 163 FADVVCDYLVGQNSCALYLSL 183
F D+V DYL+GQ++CAL+LSL
Sbjct: 145 FGDIVPDYLLGQSTCALFLSL 165
>gi|307111014|gb|EFN59249.1| hypothetical protein CHLNCDRAFT_19196 [Chlorella variabilis]
Length = 297
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 175 NSCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
N C L +EC RYLET K YENKPA++IQ + TDYLSR+ ALT VR VNKTDV
Sbjct: 135 NDCTLVCGWSNQECARYLETFKSYENKPAEVIQKDLGTDYLSRINAALTVVRGVNKTDVK 194
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVS 279
TLG FGS++ I AS E+L CPGIG K +RL++TFH+PF+R +S
Sbjct: 195 TLGDRFGSVAVIFKASAEELQACPGIGPTKARRLHETFHQPFRRSIS 241
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 38/45 (84%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
NAI+VS RQ+GNP+LKYIRNVRW F D+V D+L+G+ + L+LSL
Sbjct: 42 NAIIVSTRQEGNPVLKYIRNVRWQFGDIVPDFLLGRETACLFLSL 86
>gi|384246919|gb|EIE20407.1| DNA repair protein rad10, partial [Coccomyxa subellipsoidea C-169]
Length = 219
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 95/180 (52%), Gaps = 59/180 (32%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCD----------------------YLVGQ-- 174
NA+LVS+RQ+GNP+LK+IRNVRW F D+V D Y+ G+
Sbjct: 1 NAVLVSKRQEGNPVLKHIRNVRWQFTDIVPDYQMGPNTCALFLSLRYHLLKPTYIYGRIK 60
Query: 175 ---------------------------------NSCALYLSL--EECGRYLETIKVYENK 199
N C L + EEC RYLET K YE+K
Sbjct: 61 ELQRAFRTRVLLCHVDVDDVVEPLAQVTKAALLNDCTLICAWSHEECARYLETYKAYESK 120
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PAD IQG+ + DYLS+LT ALT+VR VNKTDV+TLG F + + +M A+M+ L+ PGIG
Sbjct: 121 PADAIQGRTEEDYLSKLTAALTTVRGVNKTDVLTLGGAFKTAAGVMRANMQQLSALPGIG 180
>gi|301777726|ref|XP_002924284.1| PREDICTED: DNA excision repair protein ERCC-1-like [Ailuropoda
melanoleuca]
Length = 306
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 202 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 261
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL +M AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 262 LTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHEPFLKV 304
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 107 SSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSL 151
>gi|426243944|ref|XP_004015800.1| PREDICTED: DNA excision repair protein ERCC-1 [Ovis aries]
Length = 284
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 85/122 (69%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+++ + A ++ ++ + L S EE GRYLET K YE KPADL+ +++ D++SR
Sbjct: 161 VKDPQKALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR 220
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+T LT+V+SVNKTD TL +TFGSL ++ AS EDL+ CPG+G +K +RL+D FHEPF
Sbjct: 221 VTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFL 280
Query: 276 RV 277
+V
Sbjct: 281 KV 282
>gi|73948160|ref|XP_855116.1| PREDICTED: DNA excision repair protein ERCC-1 [Canis lupus
familiaris]
Length = 294
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 190 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 249
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL +M AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 250 LTTFGSLEQLMAASREDLALCPGLGPQKARRLFDVLHEPFLKV 292
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 95 NSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSL 139
>gi|397607163|gb|EJK59580.1| hypothetical protein THAOC_20175 [Thalassiosira oceanica]
Length = 321
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 46/218 (21%)
Query: 121 NVGTASA--SASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVG----- 173
N+G S+ +A S+ S + + +SQ+QKGNP+L +IRNV F+ +V DY+
Sbjct: 83 NIGEDSSGITARDHHSMLSAHVLHISQKQKGNPVLLHIRNVPHKFSPMVPDYIFAPTRIA 142
Query: 174 --------------------------------QNSCALYLSL--EECGRYLETIKVYENK 199
QN+ L L+ +E RYLET+K ++ K
Sbjct: 143 ELKNDFEFRMLLCLVDLEDNTNPILFLNDLSVQNNLTLILAWSEQEAARYLETVKAFDGK 202
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
+IQ + T+++ +++HAL+SVRSVNKTD L + FG+ +++AS+++L+ CPGIG
Sbjct: 203 DLSMIQKREFTNHIDKVSHALSSVRSVNKTDAGQLLNQFGTFKSVVNASLDELSVCPGIG 262
Query: 260 ERKVKRLYDTFHEPF-----KRVVSSHPPIPETPSQKD 292
+KV RL+D FH PF KR S E KD
Sbjct: 263 PKKVARLHDAFHRPFNSEMKKRAASGDKKAAEQSKGKD 300
>gi|115496970|ref|NP_001069853.1| DNA excision repair protein ERCC-1 [Bos taurus]
gi|122145868|sp|Q1LZ75.1|ERCC1_BOVIN RecName: Full=DNA excision repair protein ERCC-1
gi|94534838|gb|AAI16164.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Bos taurus]
gi|296477517|tpg|DAA19632.1| TPA: DNA excision repair protein ERCC-1 [Bos taurus]
Length = 294
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 190 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 249
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDL+ CPG+G +K +RL+D FHEPF +V
Sbjct: 250 LTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 95 NSIIVSPRQRGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSL 139
>gi|350539469|ref|NP_001233733.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
gi|6576543|dbj|BAA88319.1| ERCC1 [Cricetulus griseus]
Length = 293
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 83/122 (68%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+++ + A D+ ++ + L S EE GRYLET K YE KPADL+ +++ ++LSR
Sbjct: 170 VKDPQKALKDLAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSR 229
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF
Sbjct: 230 ATECLTTVKSVNKTDSQTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHEPFL 289
Query: 276 RV 277
+V
Sbjct: 290 KV 291
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+ILVS RQ+GNP+LK++RNV W F +V DY++GQ++CAL+LSL
Sbjct: 94 NSILVSPRQRGNPVLKFVRNVPWEFGEVTPDYVLGQSTCALFLSL 138
>gi|440902295|gb|ELR53102.1| DNA excision repair protein ERCC-1, partial [Bos grunniens mutus]
Length = 298
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 194 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDL+ CPG+G +K +RL+D FHEPF +V
Sbjct: 254 LTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 296
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSL 143
>gi|345310668|ref|XP_001517592.2| PREDICTED: DNA excision repair protein ERCC-1-like [Ornithorhynchus
anatinus]
Length = 310
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 78/104 (75%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + + L S EE GRYLET K YE KPADL++ +++ D+LSR+T LT+V+SVN+TD
Sbjct: 202 LLAECTLILAWSPEEAGRYLETYKAYEQKPADLLKEKLEQDFLSRVTDCLTTVKSVNRTD 261
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+TL STFGSL ++ AS EDL+ CPG G +K +RL+DT HEPF
Sbjct: 262 SLTLLSTFGSLDQLVAASAEDLSLCPGFGPQKARRLFDTLHEPF 305
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++I+VS RQ+GNP+LKY+RNV W F D++ DY++GQ++CAL+LSL
Sbjct: 111 SSIIVSPRQRGNPVLKYVRNVPWQFGDILPDYVLGQSTCALFLSL 155
>gi|149722206|ref|XP_001502644.1| PREDICTED: DNA excision repair protein ERCC-1-like [Equus caballus]
Length = 291
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 187 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 246
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 247 LATFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 289
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 11/72 (15%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYEN 198
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL Y N
Sbjct: 92 NSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSLR-----------YHN 140
Query: 199 KPADLIQGQMDT 210
D I ++ T
Sbjct: 141 LHPDYIHQRLQT 152
>gi|432108802|gb|ELK33410.1| DNA excision repair protein ERCC-1 [Myotis davidii]
Length = 267
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 163 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTDCLTTVKSVNKTDSQTL 222
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 223 LTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 265
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DVV DY++GQ++CAL+LSL
Sbjct: 68 NSIIVSPRQRGNPVLKFVRNVPWEFGDVVPDYVLGQSTCALFLSL 112
>gi|1763756|gb|AAB54060.1| excision repair enzyme ERCC-1 [Mesocricetus auratus]
Length = 127
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 79/116 (68%)
Query: 162 AFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALT 221
A D+ ++ + L S EE GRYLET K YE KPADL+ +++ ++LSR T LT
Sbjct: 10 ALKDLAKMCILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLT 69
Query: 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 70 TVKSVNKTDSQTLLATFGSLEQLLTASREDLALCPGLGPQKARRLFDVLHEPFLKV 125
>gi|344269327|ref|XP_003406504.1| PREDICTED: DNA excision repair protein ERCC-1-like [Loxodonta
africana]
Length = 298
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 2/102 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 194 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 253
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +
Sbjct: 254 LATFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLK 295
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F DVV DY++G ++CAL+LSL
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVVPDYVLGHSTCALFLSL 143
>gi|393227898|gb|EJD35559.1| DNA repair protein rad10 [Auricularia delicata TFB-10046 SS5]
Length = 359
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 59/201 (29%)
Query: 133 QSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVV------------------------- 167
Q++ S ++ILV+ Q+GNP+L++IRNV ++D+V
Sbjct: 16 QNVSSGSSILVNTCQRGNPVLEHIRNVAKEWSDIVPDFQMGRTTCALFLSLKYHRLHPEY 75
Query: 168 --------------------CDY--------------LVGQNSCALYLSLEECGRYLETI 193
CD L+ + + S EECG YL T
Sbjct: 76 IHTRIQRLVHMYTLRILLIHCDITEHQDSIRELTKVCLINNMTIIVAWSPEECGLYLSTF 135
Query: 194 KVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLA 253
KVYE+KP D I+ ++D D++S L ALTS+RSVNKTDV TL +TFGS + I A+ E L
Sbjct: 136 KVYEHKPPDAIRERIDKDHMSILRAALTSIRSVNKTDVTTLKTTFGSFAGIAKATSEQLV 195
Query: 254 RCPGIGERKVKRLYDTFHEPF 274
+CPGIG+ K +R+ D F PF
Sbjct: 196 KCPGIGQTKARRIKDAFEHPF 216
>gi|226533697|ref|NP_001152781.1| DNA excision repair protein ERCC-1 [Sus scrofa]
gi|226354716|gb|ACO50967.1| excision repair cross-complementing rodent repair deficiency
complementation group 1 [Sus scrofa]
Length = 294
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 82/121 (67%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+++ + A D+ ++ + L S EE GRYLET K YE KPADL+ +++ D++SR
Sbjct: 171 VKDPQQALRDLAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR 230
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+T LT+V+SVNKTD TL +TFGSL + AS EDLA CPG+G +K +RL+D HEPF
Sbjct: 231 VTECLTTVKSVNKTDSQTLLTTFGSLEQLTAASREDLALCPGLGPQKARRLFDVLHEPFL 290
Query: 276 R 276
+
Sbjct: 291 K 291
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 95 NSIIVSPRQRGNPVLRFVRNVPWQFGDVLPDYVLGQSTCALFLSL 139
>gi|260824255|ref|XP_002607083.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
gi|229292429|gb|EEN63093.1| hypothetical protein BRAFLDRAFT_118676 [Branchiostoma floridae]
Length = 427
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L S EE G+YLET K YE+KPADLI+ + D DYLS+ T LT++RSVNKTDV TL
Sbjct: 316 CTLILAWSAEEAGKYLETYKAYESKPADLIKEKTDKDYLSKATDFLTTIRSVNKTDVSTL 375
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+TF S+ I+ AS EDLA CPG G +K KR+YD H+PF R
Sbjct: 376 VTTFRSIEGIIKASKEDLALCPGFGPQKAKRVYDALHQPFLR 417
>gi|441656301|ref|XP_003277689.2| PREDICTED: DNA excision repair protein ERCC-1 [Nomascus leucogenys]
Length = 195
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D+ SR+T LT+V+SVNKTD TL
Sbjct: 92 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFASRVTECLTTVKSVNKTDSQTL 151
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 152 LTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 194
>gi|156230822|gb|AAI51884.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
Length = 342
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL++ Q++ +YLS++T LT+V+SVNKTD +TL
Sbjct: 235 CTLILAWSPEEAGRYLETYKSYEKKPADLLKEQVEKNYLSQVTDCLTTVKSVNKTDAMTL 294
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
STF SL I+ AS E+L CPG+G +K +RLYD H+PF
Sbjct: 295 LSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQPF 334
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 107 TTSQNPTLSQGG-------EQNVGTASASASSS---QSIQSRNAILVSQRQKGNPLLKYI 156
T S+ P Q G EQ G +S S + S N+I+VS RQ+GNP+LK++
Sbjct: 98 TDSEKPETEQQGLSEGPTEEQTKGEGQSSESFVVPPHLLGSGNSIIVSPRQRGNPILKFV 157
Query: 157 RNVRWAFADVVCDYLVGQNSCALYLSL 183
RNV W F +VV DY++G+ +CAL+LS+
Sbjct: 158 RNVPWEFGEVVPDYVLGRTTCALFLSV 184
>gi|156739319|ref|NP_001096608.1| DNA excision repair protein ERCC-1 [Danio rerio]
gi|187608525|ref|NP_001120181.1| uncharacterized protein LOC100145222 [Xenopus (Silurana)
tropicalis]
gi|44890524|gb|AAH66697.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|156230040|gb|AAI52195.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Danio rerio]
gi|166796426|gb|AAI59290.1| LOC100145222 protein [Xenopus (Silurana) tropicalis]
Length = 342
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL++ Q++ +YLS++T LT+V+SVNKTD +TL
Sbjct: 235 CTLILAWSPEEAGRYLETYKSYEKKPADLLKEQVEKNYLSQVTDCLTTVKSVNKTDAMTL 294
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
STF SL I+ AS E+L CPG+G +K +RLYD H+PF
Sbjct: 295 LSTFSSLEGIIKASKEELVLCPGLGPQKARRLYDVLHQPF 334
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 135 IQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+ S N+I+VS RQ+GNP+LK++RNV W F +VV DY++G+ +CAL+LS+
Sbjct: 136 LGSGNSIIVSPRQRGNPILKFVRNVPWEFGEVVPDYVLGRTTCALFLSV 184
>gi|428178864|gb|EKX47737.1| ERCC1/Rad10 nucleotide excision repair [Guillardia theta CCMP2712]
Length = 296
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
Query: 175 NSCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
N+ L LS EE RYLET + YE+K AD IQ +++ DY+SRLT LT+VRSVN+TDV
Sbjct: 152 NNWTLILSWSPEESARYLETYQTYEHKQADSIQERVEGDYMSRLTDVLTNVRSVNRTDVA 211
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
L ++ GSL++IM AS E LA CPG+GE+K++RL++ F EPF++V
Sbjct: 212 NLSTSLGSLANIMTASRERLALCPGVGEKKIQRLFEAFREPFRQV 256
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
A+LVS+RQ GNPLLK+IRNV W AD++ DY +G +CAL+LS+
Sbjct: 60 AVLVSRRQAGNPLLKFIRNVPWEHADILADYQMGSQTCALFLSV 103
>gi|348515709|ref|XP_003445382.1| PREDICTED: DNA excision repair protein ERCC-1-like [Oreochromis
niloticus]
Length = 335
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 80/119 (67%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+++ A D+ ++ + L S EE GRYLET K YE KPAD+++ Q++ DYLS+
Sbjct: 209 VKDPHHALKDLARMCIMADCTLILAWSPEEAGRYLETYKSYEKKPADMLKEQVEKDYLSK 268
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+T LT+V+S+NKTD +TL S F S+ I+ AS EDL CPG+G +K +RL+D H+PF
Sbjct: 269 VTDCLTTVKSINKTDAITLLSAFSSVEGIISASKEDLVVCPGLGPQKARRLFDVLHKPF 327
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 135 IQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIK 194
+ S ++I+VS RQ+GNP+LK++R+V W F DVV DY++GQ +CAL+LSL
Sbjct: 129 VGSGSSIIVSPRQRGNPILKFVRSVPWEFGDVVPDYVLGQTTCALFLSLR---------- 178
Query: 195 VYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLAR 254
Y N + I D L +L H T + + DV L+ + M D
Sbjct: 179 -YHNLNPNYIH-----DRLKQLGHTFTLRVLLVQVDVKDPHHALKDLARM--CIMADCTL 230
Query: 255 CPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNK 313
+ R +T+ S+ P ++ VE+ +++VT+ + +NK
Sbjct: 231 ILAWSPEEAGRYLETY--------KSYEKKPADMLKEQVEKDYLSKVTDCLTTVKSINK 281
>gi|291414832|ref|XP_002723664.1| PREDICTED: excision repair cross-complementing 1 isofrom 2-like
[Oryctolagus cuniculus]
Length = 301
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 75/104 (72%), Gaps = 2/104 (1%)
Query: 175 NSCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ C+L L S EE RYLET K YE KPADL+ +++ +LS++T LT+V+SVNKTD
Sbjct: 195 SDCSLALPPSPEEAARYLETYKAYEQKPADLLMEKLEHSFLSQVTECLTTVKSVNKTDSQ 254
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
TL +TFGSL ++ AS +DLA CPG+G +K +RLYD HEPF R
Sbjct: 255 TLLATFGSLEQLIAASRDDLALCPGLGPQKARRLYDVLHEPFLR 298
>gi|326436782|gb|EGD82352.1| excision repair cross-complementing rodent repair deficiency
[Salpingoeca sp. ATCC 50818]
Length = 548
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 94/195 (48%), Gaps = 59/195 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------E 184
N + V RQKGNP+L++IRNV W + + D+++G+ +C L+LSL
Sbjct: 342 NFVRVDVRQKGNPVLQHIRNVPWQYCEQKADFVMGKRTCGLFLSLRYHLLHPEYIHGRIR 401
Query: 185 ECGR---------------------------------------------YLETIKVYENK 199
E GR Y+ET K YENK
Sbjct: 402 EVGRLYQVRVLLVLVDVRDSQPVLMDLTKLCMVHNYTLMLGWSNKEVGRYVETYKAYENK 461
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
AD +Q DYLS++ LTSVRSVNKTD +TL S FGS+ I AS +D+ CPG G
Sbjct: 462 SADALQQTTAPDYLSQVVACLTSVRSVNKTDAITLLSAFGSVRGIATASEDDIRLCPGFG 521
Query: 260 ERKVKRLYDTFHEPF 274
++KV++L +PF
Sbjct: 522 DKKVQKLKSVLTQPF 536
>gi|291223501|ref|XP_002731748.1| PREDICTED: excision repair cross-complementing 1-like [Saccoglossus
kowalevskii]
Length = 246
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 101/195 (51%), Gaps = 59/195 (30%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAF----ADVV-----C-------------DYL------V 172
I+V+ +QKGNP+LK+IRNV W + AD V C DY+ +
Sbjct: 36 IIVNTKQKGNPILKHIRNVSWEYGDIVADYVMGKTTCALYLSIRYHNLKPDYIHDRLKQL 95
Query: 173 GQN-----------------------------SCALYLSL--EECGRYLETIKVYENKPA 201
G + C L L+ EE GRYLET K YENKPA
Sbjct: 96 GHSYELRILLVQVDVKDPHHAVKDLTKIAIRSDCTLILAWTPEEVGRYLETYKSYENKPA 155
Query: 202 DLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGER 261
D+++ ++ +D++SR T LT+V+ VNKTDVVTL S+F S+ I+ AS E+L+ CPG G +
Sbjct: 156 DILKEKVQSDFMSRATDCLTTVKKVNKTDVVTLLSSFQSIEGIIKASKEELSLCPGFGPQ 215
Query: 262 KVKRLYDTFHEPFKR 276
K RL F E F R
Sbjct: 216 KAYRLQSLFDESFIR 230
>gi|270000835|gb|EEZ97282.1| hypothetical protein TcasGA2_TC011086 [Tribolium castaneum]
Length = 213
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 99/192 (51%), Gaps = 46/192 (23%)
Query: 131 SSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL------- 183
+S+S +++LVS +Q+GNPLLK I NV W + D+V DY +G+ +CAL+LSL
Sbjct: 21 TSKSAARTHSVLVSPKQRGNPLLKSICNVPWEYDDIVPDYQMGRTTCALFLSLRYHNLNP 80
Query: 184 ---------------------------------------EECGRYLETIKVYENKPADLI 204
EE G+ +ET K+YENKPAD I
Sbjct: 81 DYIHERLKKLGKTDPHHLLKNLTRVCILADLTLILAWSAEEAGKIIETYKIYENKPADNI 140
Query: 205 QGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVK 264
+ ++ RL LTS++ +NKTD + L + F +L ++ A+ L+ CPG+G K +
Sbjct: 141 MEKGESSPYIRLLQVLTSIKPINKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKAR 200
Query: 265 RLYDTFHEPFKR 276
+LY T HE F R
Sbjct: 201 KLYSTLHEKFCR 212
>gi|343427963|emb|CBQ71488.1| related to dna excision repair protein ercc-1 [Sporisorium
reilianum SRZ2]
Length = 352
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 59/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV------------------------------- 167
N ILV+ Q+GNP+L++IRN+ W +AD+V
Sbjct: 76 NTILVNNCQRGNPVLQHIRNIGWEYADIVPDYQVGVSACVLFLSIRYHRLHPEYVHTRIA 135
Query: 168 --------------CDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
CD L+ + + + +E GRY+ET K +E K
Sbjct: 136 KLAQMFTLRVLLVLCDVNDHQSAIKELTKTALINNLTLVIAWTADEAGRYIETYKSFEFK 195
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P DLI+ ++ D+ S++T+ LT VR VN+TDVVTL + FGS ++ A +E L CPG G
Sbjct: 196 PPDLIKERVGEDFPSQITNVLTQVRGVNRTDVVTLLTRFGSFRGVVGAGVEQLGMCPGFG 255
Query: 260 ERKVKRLYDTFHEPFK 275
E K KRL + F +PF+
Sbjct: 256 EVKAKRLREVFSQPFR 271
>gi|301100660|ref|XP_002899419.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
gi|262103727|gb|EEY61779.1| DNA excision repair protein ERCC-1 [Phytophthora infestans T30-4]
Length = 308
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 121/246 (49%), Gaps = 41/246 (16%)
Query: 71 PPQNLFTPSQ-SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQ--------- 120
P ++ TPS +F++AF+ ++ + Y PPP PP T+ Q
Sbjct: 61 PQEDGSTPSSLTFNEAFAQLRKTSSYVAPPPQEDKPPARDAAATIYVNRRQKGNPMLKSV 120
Query: 121 -NVG-----------TASASASSSQSIQSRNAIL--------VSQRQKGNPLLKYIRNVR 160
NVG S+ + R +L V +K +P Y +
Sbjct: 121 RNVGLEFRDGLIPDYVMGESSCCVLFLSVRYHLLHNSYLDERVQSVRKDDPT-HYKTKLV 179
Query: 161 WAFADVVCD----------YLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDT 210
F DV + L+ + L S E RYLET K YENK A +I+ +++
Sbjct: 180 LCFVDVDDNEVALREVNRVALLSGFTLVLAWSWLEAARYLETFKAYENKSATIIKEKVEA 239
Query: 211 DYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF 270
++L + LTS+RSVNKTDVVTL STFG++ +M+ASME+L+ CPG+G +KV++L +TF
Sbjct: 240 EFLPKANDVLTSIRSVNKTDVVTLLSTFGTVKGLMNASMEELSLCPGVGAKKVRQLLETF 299
Query: 271 HEPFKR 276
EPF +
Sbjct: 300 QEPFTK 305
>gi|344249242|gb|EGW05346.1| DNA excision repair protein ERCC-1 [Cricetulus griseus]
Length = 111
Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats.
Identities = 56/96 (58%), Positives = 72/96 (75%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD TL +TFGSL
Sbjct: 14 SAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDSQTLLATFGSL 73
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 74 EQLLTASREDLALCPGLGPQKARRLFDVLHEPFLKV 109
>gi|440794479|gb|ELR15639.1| DNA repair protein rad10 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 485
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 87/147 (59%), Gaps = 18/147 (12%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADV------------VCDYLVGQNSCALYLSLEECGR 188
IL RQ G+ K+ ++ DV +C + CA SL E R
Sbjct: 275 ILTRMRQLGS---KFNLSIVLCLVDVEGSTQPLEELMLLCTNMGFTLICAW--SLAEAAR 329
Query: 189 YLETIKVYENKPADLIQGQMDTDY-LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247
YLET K YENK A +I+ Q+ + + L+ LT+VR VNKTDV+TL STFGSL +I+D
Sbjct: 330 YLETYKAYENKGAKIIKEQVQSGNPYAVLSDCLTAVRGVNKTDVLTLSSTFGSLKNIIDC 389
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPF 274
SME+L+ CPG+G RKVK LY+TFH PF
Sbjct: 390 SMEELSLCPGLGPRKVKNLYETFHAPF 416
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVC-DYLVGQNSCALYLSLE 184
+LVS RQ+GN LLKY+ NVRW +++ V DY++G +CALYLS++
Sbjct: 222 LLVSTRQRGNRLLKYLNNVRWEYSETVLPDYVMGGQACALYLSIK 266
>gi|443899763|dbj|GAC77092.1| structure-specific endonuclease ERCC1-XPF, ERCC1 component
[Pseudozyma antarctica T-34]
Length = 494
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 97/198 (48%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFAD------------------------------- 165
S +LV+ Q+GNP+L++IRN+ W +AD
Sbjct: 218 SGTTVLVNNCQRGNPVLQHIRNIGWEYADIVPDYQVGLSSCVLFLSIRYHRLHPEYVHTR 277
Query: 166 --------------VVCDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
V+CD ++ + L S EE G+Y+ET K +E
Sbjct: 278 ISKLQQMYTLRVLLVLCDVNDHQAAIRELTKVSMINSLTMVLAWSAEEAGKYIETYKSFE 337
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
+KP D I+ ++ DYL+++T+ LT +R +N+TDVVTL STFG+L +++A + +A CPG
Sbjct: 338 HKPPDAIKERIGEDYLAQVTNVLTQIRGINRTDVVTLLSTFGTLRGVVNAEVAQVAMCPG 397
Query: 258 IGERKVKRLYDTFHEPFK 275
GE K KRL D PF+
Sbjct: 398 FGEVKAKRLCDAVRMPFR 415
>gi|325194039|emb|CCA28137.1| DNA excision repair protein ERCC1 putative [Albugo laibachii Nc14]
Length = 293
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 76/104 (73%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ Q + L S +E RY+ET K YE KPA LIQ +++TD+LS+ + L+ +RSVNKTD
Sbjct: 187 LLSQFTLVLSWSWQEAARYIETFKTYEQKPASLIQERVETDFLSQANNLLSGIRSVNKTD 246
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+VTL STFG++ ++M+A+ E++A CPG+G +K+K L F EPF
Sbjct: 247 IVTLLSTFGTMKNLMNATPEEMAVCPGLGAKKLKNLLKAFQEPF 290
>gi|351706988|gb|EHB09907.1| DNA excision repair protein ERCC-1 [Heterocephalus glaber]
Length = 483
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 101/238 (42%), Gaps = 107/238 (44%)
Query: 147 QKGNPLLKYIRNVRWAFADVVCDYL---------------------------VGQN---- 175
++GNP+LK++RNV W F +V+ DY+ +G+N
Sbjct: 245 KRGNPVLKFVRNVPWEFGEVIPDYVLGSTCALFLSLRYHNLHPDYIHERLQSLGKNFALR 304
Query: 176 -------------------------SCALYLSL--EECGRYLETIKVYENKPADLIQGQM 208
C L L+ EE GRYLET K YE KPADL+ ++
Sbjct: 305 VLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEKL 364
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFG----------------------------- 239
+ +++SR+T L+SV+SVNKTD TL STFG
Sbjct: 365 EHNFVSRVTECLSSVKSVNKTDSQTLLSTFGACASSQGYLGGPRQLGQGGALCSPLLTSR 424
Query: 240 --------------------SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
SL +M AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 425 FRPPAPXXXXXXXXXXXXXXSLEQLMAASREDLALCPGLGPQKARRLFDVLHEPFLKV 482
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 27/112 (24%)
Query: 99 PPPPANP--PTTSQNPTL---SQGGEQNV----------GTASASASSSQSIQSR----- 138
PPP A P +T PT+ +QG +Q G A+ + S S+
Sbjct: 90 PPPGAKPLFKSTGNLPTMETSAQGAQQTYAEYAISQPAGGAAATCPTGSDSLAGETPNQA 149
Query: 139 -------NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+LK++RNV W F +V+ DY++GQ++CAL+LSL
Sbjct: 150 LKPGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDYVLGQSTCALFLSL 201
>gi|353240901|emb|CCA72747.1| related to dna excision repair protein ercc-1 [Piriformospora
indica DSM 11827]
Length = 247
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 98/200 (49%), Gaps = 59/200 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADV-------------------------------- 166
++ILV+ Q+GNPLL +IR+V + FA++
Sbjct: 15 SSILVNPVQRGNPLLSHIRHVAYQFAEIAPDYQVGSTTCVLFLSLKYHRLHPEYIHGRIE 74
Query: 167 -------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
VCD L+ + + +LEE G YL T K++E+K
Sbjct: 75 KIQGLYGLRILLLVCDVTEHQDYIRELTRICLINNLTIMVAWTLEEAGVYLSTYKLFEHK 134
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P DLI+ ++D DY SR+ A TS++ VNKTDV+TL S FGS S+I A+ + L CPG G
Sbjct: 135 PPDLIKERVDNDYDSRMRAAFTSIKGVNKTDVMTLKSNFGSFSNIAHATPQQLLDCPGFG 194
Query: 260 ERKVKRLYDTFHEPFKRVVS 279
KV+RL D +PFK VS
Sbjct: 195 ALKVRRLKDAMEKPFKPTVS 214
>gi|71024273|ref|XP_762366.1| hypothetical protein UM06219.1 [Ustilago maydis 521]
gi|46101824|gb|EAK87057.1| hypothetical protein UM06219.1 [Ustilago maydis 521]
Length = 334
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 59/195 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFAD--------------------------------- 165
N ILV+ Q+GNP+L+++RN+ W +AD
Sbjct: 78 NTILVNNCQRGNPVLQHMRNIGWEYADIVPDYQVGLSACVLFLSIRYHRLHPEYVHTRVQ 137
Query: 166 ------------VVCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
V+CD ++ + + L S EE RYLET K +E K
Sbjct: 138 KLAHMYTLRILLVLCDVTDHQAAIKELTKTCVINKLTLMLAWSAEEAARYLETYKSFELK 197
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P D I+ ++ DYLS++T+ LT VR +N+TDV+TL STFGSL ++++A++ LA CPG
Sbjct: 198 PPDAIKERVGDDYLSQVTNVLTQVRGINRTDVITLLSTFGSLKNVVNANVHQLAMCPGFA 257
Query: 260 ERKVKRLYDTFHEPF 274
RK RL F PF
Sbjct: 258 LRKASRLNHVFTLPF 272
>gi|298713770|emb|CBJ27142.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 162
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 70/103 (67%)
Query: 178 ALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGST 237
L SL+E RYLET K YE+K AD IQ ++D D+L +L VRSVNK+DV+TL S
Sbjct: 50 VLAWSLQEAARYLETYKAYEHKSADSIQEKVDDDFLGKLQDCFGVVRSVNKSDVLTLASN 109
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSS 280
FGSL + DA+ +L+ CPG+GE+KV R+++ HEP R SS
Sbjct: 110 FGSLKAVCDATAGELSLCPGLGEKKVARIHEALHEPLVRKHSS 152
>gi|47226306|emb|CAG09274.1| unnamed protein product [Tetraodon nigroviridis]
Length = 180
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPAD ++ Q++ DYLS++T LT+V+S+NKTD +TL
Sbjct: 87 CTLILAWRPEEAGRYLETYKSYEKKPADALKEQVEKDYLSKVTDCLTTVKSINKTDAITL 146
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
STF S+ IM+AS EDL CPG+G +KV R+Y
Sbjct: 147 LSTFSSVEGIMNASKEDLVLCPGLGPQKVGRIY 179
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+GNP+LKY+R+V W F DVV DY++GQ +CAL+LSL
Sbjct: 1 RGNPILKYVRSVPWEFGDVVPDYVLGQTTCALFLSL 36
>gi|350405231|ref|XP_003487367.1| PREDICTED: DNA excision repair protein ERCC-1-like [Bombus
impatiens]
Length = 254
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 110/233 (47%), Gaps = 42/233 (18%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQN------------------- 121
SF AFS +K SEF++ P P P+ + S+ TL +Q
Sbjct: 21 SFQSAFSELKKSEFFSEPLPGPSKVTSASKFSTLLVSLKQKGNPLLKFITNVPWEFSEIV 80
Query: 122 ----VGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADV----------- 166
+G + + S N + +R K L + N+R V
Sbjct: 81 PDYVMGKTTCALFLSIRYHQLNPDYIHERLKA---LGNMYNLRVLLVQVDVAEPHHALKH 137
Query: 167 ---VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSV 223
+C ++ + L + E+ G+ +ET K+YENKP D I + DT +L +ALT++
Sbjct: 138 LTRIC--ILADLTLMLAWNAEDAGKIIETYKIYENKPPDAIMERSDTAPYQKLMNALTTI 195
Query: 224 RSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
RSVNKTD TL STFG+LS ++ A LA CPG+G +K +R++ T HE F R
Sbjct: 196 RSVNKTDATTLLSTFGTLSDLVQAPSNILALCPGVGVQKAERIHKTLHEQFLR 248
>gi|395751371|ref|XP_003779251.1| PREDICTED: DNA excision repair protein ERCC-1 [Pongo abelii]
Length = 273
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 83/198 (41%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR SL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSR------------------------SLEQLIAASREDLALCPGLG 254
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 255 PQKARRLFDVLHEPFLKV 272
>gi|260593725|ref|NP_001159521.1| DNA excision repair protein ERCC-1 isoform 3 [Homo sapiens]
gi|397493351|ref|XP_003817571.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Pan
paniscus]
gi|15146354|dbj|BAB62810.1| excision repair protein 1 [Homo sapiens]
gi|119577753|gb|EAW57349.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence), isoform CRA_b [Homo sapiens]
gi|410220360|gb|JAA07399.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410254814|gb|JAA15374.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410295294|gb|JAA26247.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
gi|410335885|gb|JAA36889.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 (includes overlapping antisense
sequence) [Pan troglodytes]
Length = 273
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 83/198 (41%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR SL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSR------------------------SLEQLIAASREDLALCPGLG 254
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 255 PQKARRLFDVLHEPFLKV 272
>gi|281337435|gb|EFB13019.1| hypothetical protein PANDA_013590 [Ailuropoda melanoleuca]
Length = 260
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 66/89 (74%), Gaps = 2/89 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 162 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 221
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKV 263
+TFGSL +M AS EDLA CPG+G +KV
Sbjct: 222 LTTFGSLEQLMAASREDLALCPGLGPQKV 250
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 67 SSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSL 111
>gi|402905935|ref|XP_003915763.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 4 [Papio
anubis]
Length = 274
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 83/198 (41%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR SL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSR------------------------SLEQLIAASREDLALCPGLG 254
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 255 PQKARRLFDVLHEPFLKV 272
>gi|426389190|ref|XP_004061007.1| PREDICTED: DNA excision repair protein ERCC-1 isoform 3 [Gorilla
gorilla gorilla]
Length = 273
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 89/198 (44%), Gaps = 83/198 (41%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR SL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSR------------------------SLEQLIAASREDLALCPGLG 254
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 255 PQKARRLFDVLHEPFLKV 272
>gi|157117886|ref|XP_001653084.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
gi|108875925|gb|EAT40150.1| AAEL008081-PA [Aedes aegypti]
Length = 249
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 59/211 (27%)
Query: 125 ASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++++A+ +S+ N +LV+ +Q+GNPLLK I+N+ W + D+V DY+VG SC LY+SL
Sbjct: 38 STSTATVVRSVNKGNCVLVNPKQRGNPLLKSIQNIPWEYDDIVPDYVVGATSCILYISLR 97
Query: 185 E--------CGRYLETIKVYE--------------------------------------- 197
GR + K+YE
Sbjct: 98 YHNLNPDYIHGRLKQLGKMYELRVLLVQVDIQEPHNALKHLTRICLLADLTLMLAWNAEE 157
Query: 198 ------------NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIM 245
NKP DLI + + +L ALT+++ VNKTD +TL +G+L++++
Sbjct: 158 AGKIVETYKMFENKPPDLIMERAEQYPYQKLVSALTNIKPVNKTDAMTLIQNYGTLANMI 217
Query: 246 DASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
++S E L+ C G+G RK K+L+ TF+E F +
Sbjct: 218 NSSEEKLSLCSGLGPRKAKKLHKTFNENFLK 248
>gi|157136934|ref|XP_001663869.1| excision repair cross-complementing 1 ercc1 [Aedes aegypti]
gi|108869820|gb|EAT34045.1| AAEL013693-PA [Aedes aegypti]
Length = 249
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 59/211 (27%)
Query: 125 ASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++++A+ +S+ N +LV+ +Q+GNPLLK I+N+ W + D+V DY+VG SC LY+SL
Sbjct: 38 STSTATVVRSVNKGNCVLVNPKQRGNPLLKSIQNIPWEYDDIVPDYVVGATSCILYISLR 97
Query: 185 E--------CGRYLETIKVYE--------------------------------------- 197
GR + K+YE
Sbjct: 98 YHNLNPDYIHGRLKQLGKMYELRVLLVQVDIQEPHNALKHLTRICLLADLTLMLAWNAEE 157
Query: 198 ------------NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIM 245
NKP DLI + + +L ALT+++ VNKTD +TL +G+L++++
Sbjct: 158 AGKIVETYKMFENKPPDLIMERAEQYPYQKLVSALTNIKPVNKTDAMTLIQNYGTLANMI 217
Query: 246 DASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
++S E L+ C G+G RK K+L+ TF+E F +
Sbjct: 218 NSSEEKLSLCSGLGPRKAKKLHKTFNENFLK 248
>gi|167515650|ref|XP_001742166.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778790|gb|EDQ92404.1| predicted protein [Monosiga brevicollis MX1]
Length = 194
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 93/192 (48%), Gaps = 60/192 (31%)
Query: 143 VSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSL--------------EECG 187
VS RQK NPL+K +RNV + DV D+++G+ +CAL+LSL E G
Sbjct: 1 VSLRQKDNPLIKELRNVPFQLVSDVTPDFIMGKTTCALFLSLRYHNLHPEYIHARIREVG 60
Query: 188 R---------------------------------------------YLETIKVYENKPAD 202
R YLE K +ENK A+
Sbjct: 61 RLYALRVLLVQVDVRHAQSVISDLAKLCVMHDYTLIVAGSIREAARYLELYKSFENKSAE 120
Query: 203 LIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERK 262
L+QG+ DYL++L LT+ +++NKTD VTL STF SL+ I AS +LA CPG+G++K
Sbjct: 121 LLQGEKPADYLAQLVTTLTTFKTINKTDAVTLLSTFSSLARIAKASKNELAACPGLGDKK 180
Query: 263 VKRLYDTFHEPF 274
V+ L PF
Sbjct: 181 VQHLSAILDRPF 192
>gi|224003765|ref|XP_002291554.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973330|gb|EED91661.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 191
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 171 LVGQNSCALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNK 228
L QN+ L L+ EE RY+ET K +E K A LIQ + T+Y+ +++H L SVRSVNK
Sbjct: 85 LCVQNNLTLILAWSEEEAARYVETFKAFEGKDASLIQKKEHTNYIDQISHVLGSVRSVNK 144
Query: 229 TDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
TD L S FG+ +++ AS+E+L+ CPG+G +KV+RLY+ FH PF
Sbjct: 145 TDSSQLLSQFGTWKNLVGASVEELSVCPGVGVKKVRRLYEAFHRPF 190
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 144 SQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
S RQ+GNP+L +IRNV + F+ +V DY+ CALYLSL
Sbjct: 1 STRQRGNPILAHIRNVPYQFSPMVPDYIFATTRCALYLSL 40
>gi|38112301|gb|AAR11240.1| excision repair protein [Macaca mulatta]
Length = 227
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 87/195 (44%), Gaps = 83/195 (42%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 56 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 115
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 116 SLGKNFALRVLLIQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 175
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ ++D D++SR SL ++ AS EDLA CPG+G
Sbjct: 176 PADLLMEKLDQDFVSR------------------------SLEQLIAASREDLALCPGLG 211
Query: 260 ERKVKRLYDTFHEPF 274
+K +RL+D HEPF
Sbjct: 212 PQKARRLFDVLHEPF 226
>gi|331235911|ref|XP_003330615.1| hypothetical protein PGTG_12152 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309605|gb|EFP86196.1| hypothetical protein PGTG_12152 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 264
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 59/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGR---YLET--- 192
N I+V++ Q+GNP+L I++V W F + + DY + Q + +L+LSL+ YL+T
Sbjct: 58 NNIIVNKCQRGNPVLTLIKSVPWEFGETISDYQLNQTTGSLFLSLKYHRLHPDYLDTRLK 117
Query: 193 --IKVY---------------------------------------------------ENK 199
IK Y E +
Sbjct: 118 KLIKAYDLKILLCLCDSNDHEVVLKDITKTCMVNEFTLIVAWSNAEIARYIQLFKSFEKR 177
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
DLI+ ++D DY+S+LT LT++R +NKTDV+TL + F S I++AS +L+ CPG+G
Sbjct: 178 SPDLIKEKIDNDYMSQLTSVLTTIRGLNKTDVMTLATNFRSFRQIVEASPSELSLCPGLG 237
Query: 260 ERKVKRLYDTFHEPFK 275
E+KVKRL + F+ F+
Sbjct: 238 EKKVKRLLEAFNSDFR 253
>gi|340726144|ref|XP_003401422.1| PREDICTED: DNA excision repair protein ERCC-1-like [Bombus
terrestris]
Length = 254
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 109/233 (46%), Gaps = 42/233 (18%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQN------------------- 121
SF AFS +K SEF++ P P P+ + S+ TL +Q
Sbjct: 21 SFQSAFSELKKSEFFSEPLPGPSKVTSASKFNTLLVSLKQKGNPLLKFINNVPWEFSEIV 80
Query: 122 ----VGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADV----------- 166
+G + + S N + +R K L + N+R V
Sbjct: 81 PDYVMGKTTCALFLSIRYHQLNPDYIHERLKA---LGNMYNLRVLLVQVDVAEPNHALKH 137
Query: 167 ---VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSV 223
+C ++ + L + E+ G+ +ET K+YENKP D I + DT +L +ALT++
Sbjct: 138 LTRIC--ILADLTLMLAWNAEDAGKIIETYKIYENKPPDAIMERSDTAPYQKLMNALTTI 195
Query: 224 RSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
RSVNKTD TL STFG+LS ++ LA CPG+G +K +R++ T HE F R
Sbjct: 196 RSVNKTDATTLLSTFGTLSDLVQTPSNVLALCPGVGIQKAERIHKTLHEQFLR 248
>gi|380024818|ref|XP_003696187.1| PREDICTED: DNA excision repair protein ERCC-1-like [Apis florea]
Length = 254
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 110/235 (46%), Gaps = 46/235 (19%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQN------------------- 121
+F AFS ++ SEF+N P P+ +S+ TL +Q
Sbjct: 21 TFQSAFSELRKSEFFNEAIPGPSKVKDSSKFSTLLVSLKQKGNPLLKFISNVPWEYSEIV 80
Query: 122 ----VGTASASASSSQSIQSRNAILVSQRQK--GNPLLKYIRNVRWAFADV--------- 166
+G + + S N + +R K GN + N+R V
Sbjct: 81 PDYVMGKTTCALFLSIRYHQLNPDYIHERLKTLGN-----MYNLRVLLVQVDVPEPHHAL 135
Query: 167 -----VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALT 221
+C ++ + L + E+ G+ +ET K+YENKP D I + DT +L +ALT
Sbjct: 136 KHLTRIC--ILADLTLMLAWNAEDAGKIIETYKIYENKPPDAIMDRSDTAPYQKLVNALT 193
Query: 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
++RSVNKTD TL STFG+LS ++ + LA CPGIG +K +R++ T HE F R
Sbjct: 194 TIRSVNKTDATTLLSTFGTLSELIRSQSNTLALCPGIGLQKAERIHKTLHEQFLR 248
>gi|242766034|ref|XP_002341093.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Talaromyces stipitatus ATCC 10500]
gi|218724289|gb|EED23706.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Talaromyces stipitatus ATCC 10500]
Length = 310
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 88/183 (48%), Gaps = 42/183 (22%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE-------------- 184
+AILVS RQKGNP+L +++ V W +AD+ DY++G +CAL+LSL+
Sbjct: 37 SAILVSSRQKGNPILNHVKLVPWEYADIPADYVLGATTCALFLSLKYHRLHPEYIYSHIP 96
Query: 185 ---------------------------ECGRYLETIKVYENKPADLIQGQMDTDYLSRLT 217
E YLE K EN I+ Q Y +
Sbjct: 97 NHEETLKELSKTSIVNNVTLILCWSAPEAAHYLELFKSSENAQPTAIRSQQAQSYRESVI 156
Query: 218 HALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+T+ RSVNK+D +L STFGSL ++A E ++ PG GE+KVK+ E F RV
Sbjct: 157 EFITAPRSVNKSDAASLMSTFGSLQAAVNAQPEQISAVPGWGEKKVKQWCTAVREDF-RV 215
Query: 278 VSS 280
SS
Sbjct: 216 ESS 218
>gi|302849199|ref|XP_002956130.1| hypothetical protein VOLCADRAFT_33669 [Volvox carteri f.
nagariensis]
gi|300258635|gb|EFJ42870.1| hypothetical protein VOLCADRAFT_33669 [Volvox carteri f.
nagariensis]
Length = 209
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 2/108 (1%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALT-SVRSVNKT 229
+VG + + EEC R+LET K YE+KPA IQ +++ DY+SRL L SVR +N+T
Sbjct: 102 VVGDCTLVCGWTPEECARWLETYKSYESKPASSIQERVEPDYVSRLAAVLAGSVRGINRT 161
Query: 230 DVVTLGSTFGSLSHIMDASMED-LARCPGIGERKVKRLYDTFHEPFKR 276
D TLG++FGSL+ +M + D + CPGIG KV+RL + FHEPF++
Sbjct: 162 DAHTLGTSFGSLAAMMRCNDPDAFSACPGIGPTKVRRLMEAFHEPFRK 209
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
N +LV++RQ+GNP+LK+IRNVRW FAD+V DY +GQN+ AL+LSL
Sbjct: 11 NVVLVNRRQQGNPVLKHIRNVRWQFADIVPDYQLGQNTAALFLSLR 56
>gi|193683523|ref|XP_001944270.1| PREDICTED: DNA excision repair protein ERCC-1-like [Acyrthosiphon
pisum]
Length = 267
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 69/106 (65%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L + + L + EE G+ +ET K++ENKP DLI + + D SR+ +ALT++R+VNKTD
Sbjct: 148 LAAELTLMLAWTSEEAGKLIETYKIFENKPPDLIMEKAEADDYSRIANALTTIRAVNKTD 207
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
L STFGSL +I AS LA CPG + K +LY+T H+PF +
Sbjct: 208 AALLLSTFGSLENICKASQTALALCPGFAQHKATQLYNTLHKPFLK 253
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 25/112 (22%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQ---- 136
SF+ F +K+SE Y +++ G Q++ A+++ S+ S+
Sbjct: 6 SFADEFRKVKASEHYE----------------SINSVGGQHISEATSNQPSTSSVNQSPV 49
Query: 137 ----SRNAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSL 183
S + +LV+ +Q+GNPLLK I NV W ++ D++ DY++G+ +CAL+LSL
Sbjct: 50 KSNASVSGVLVNNKQRGNPLLKSIVNVPWEYSDDILPDYVMGRTTCALFLSL 101
>gi|115717719|ref|XP_791729.2| PREDICTED: DNA excision repair protein ERCC-1-like
[Strongylocentrotus purpuratus]
Length = 471
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRY+ET K YENKP D ++ +++ ++LS++T LT+V+SVNKTDV+TL
Sbjct: 353 CTLMLAWNAEEAGRYIETYKAYENKPVDALKEKVEQNHLSKMTDCLTTVKSVNKTDVITL 412
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+ G+ I+++S E+LA PG G +K +RL F EPF R
Sbjct: 413 LANCGTFEKIVESSKEELALLPGFGPQKAERLSSIFTEPFLR 454
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNA 140
SF+ F + ++E Y P + S P S G S N+
Sbjct: 214 SFASKFHMLGTAEEYKIPQAAVKQSTSDSAVPGTSAG--------------LNKAPSGNS 259
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++V+ RQ+GNP+LK++RNV W F D+V DY++G+ +CA YLSL
Sbjct: 260 VIVNPRQRGNPILKHVRNVPWEFGDIVPDYVMGRTTCAFYLSL 302
>gi|322710849|gb|EFZ02423.1| mating-type switching protein swi10 [Metarhizium anisopliae ARSEF
23]
Length = 839
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 86/194 (44%), Gaps = 59/194 (30%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL----------------- 183
ILVS RQ+GNP+L IR++ W ++D+ DY++G +CAL+LSL
Sbjct: 501 ILVSPRQRGNPVLTSIRSLPWEYSDIPADYVMGLTTCALFLSLKYHRLHPEYIYTRIRNL 560
Query: 184 ------------------EEC------------------------GRYLETIKVYENKPA 201
E+C GRYLE K YEN
Sbjct: 561 QGKYNLRILLTMVDIPNHEDCLRELSKTSLVNNVTIILCWSAAEAGRYLELYKSYENASF 620
Query: 202 DLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGER 261
I+GQ + Y +L +T RS+NK+D V L + FGSL + ++A E L G G
Sbjct: 621 AAIRGQQTSSYADKLVDFVTVPRSLNKSDAVALVANFGSLKNAINAEQEQLGMIGGWGGV 680
Query: 262 KVKRLYDTFHEPFK 275
KVKR EPF+
Sbjct: 681 KVKRWSAAIEEPFR 694
>gi|125807281|ref|XP_001360338.1| GA10163 [Drosophila pseudoobscura pseudoobscura]
gi|54635510|gb|EAL24913.1| GA10163 [Drosophila pseudoobscura pseudoobscura]
Length = 260
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 70/239 (29%)
Query: 106 PTTSQNPTLSQGGEQNVGTASASASSSQSIQSR----------NAILVSQRQKGNPLLKY 155
PT+ + P + Q V A+++A+SS + + +++LV +Q+GNP+LK
Sbjct: 19 PTSPKKPKVQSSTIQPVPAATSTANSSNNTSASITVAKPASNPHSVLVHSKQRGNPILKS 78
Query: 156 IRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRYLETIKVY---------- 196
I+NV F D+V DY+VG+ SC L+LSL+ C R K+Y
Sbjct: 79 IQNVPLEFRDDIVPDYVVGRTSCILFLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVD 138
Query: 197 -----------------------------------------ENKPADLIQGQMDTDYLSR 215
E +P DLI +++++ +
Sbjct: 139 TPEPHNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQK 198
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L ALT+++ VNKTD VTL TFG+L +++ AS E L++ G+G RK KRL+ T EPF
Sbjct: 199 LVAALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQEPF 257
>gi|195149698|ref|XP_002015793.1| GL11250 [Drosophila persimilis]
gi|194109640|gb|EDW31683.1| GL11250 [Drosophila persimilis]
Length = 260
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 70/239 (29%)
Query: 106 PTTSQNPTLSQGGEQNVGTASASASSSQSIQSR----------NAILVSQRQKGNPLLKY 155
PT+ + P + Q V A+++A+SS + + +++LV +Q+GNP+LK
Sbjct: 19 PTSPKKPKVQPSTIQPVPAATSTANSSNNTSASITVAKPASNPHSVLVHSKQRGNPILKS 78
Query: 156 IRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRYLETIKVY---------- 196
I+NV F D+V DY+VG+ SC L+LSL+ C R K+Y
Sbjct: 79 IQNVPLEFRDDIVPDYVVGRTSCILFLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVD 138
Query: 197 -----------------------------------------ENKPADLIQGQMDTDYLSR 215
E +P DLI +++++ +
Sbjct: 139 TPEPHNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQK 198
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L ALT+++ VNKTD VTL TFG+L +++ AS E L++ G+G RK KRL+ T EPF
Sbjct: 199 LVAALTNIKPVNKTDAVTLLQTFGNLGNVITASEERLSQVMGLGPRKAKRLFKTLQEPF 257
>gi|328768907|gb|EGF78952.1| hypothetical protein BATDEDRAFT_90338 [Batrachochytrium
dendrobatidis JAM81]
Length = 223
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+ G+ + L S +E GRY+ET+K YENKP DLI+ ++D DY S+LT A+T+++SVNKTD
Sbjct: 115 IFGKTTMILAWSRQEAGRYIETLKSYENKPPDLIKKRVDDDYFSKLTEAVTAIKSVNKTD 174
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+TL S GS I A+ E+L PG GE+K R+ F F
Sbjct: 175 AMTLASNIGSFKDIAHATSEELMLLPGFGEQKAARVSSAFTTVF 218
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 124 TASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
TA SSS + A++V+ Q+GNP+L YI+NV W + + DY VG+ + ++LSL
Sbjct: 9 TAIQQPSSSLAKPRLRAVIVNTNQEGNPVLDYIKNVPWEYGETDADYQVGKTTGVIFLSL 68
Query: 184 EECGRYLETI 193
+ Y E I
Sbjct: 69 KYHRLYPEYI 78
>gi|307207093|gb|EFN84902.1| DNA excision repair protein ERCC-1 [Harpegnathos saltator]
Length = 193
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 109/216 (50%), Gaps = 43/216 (19%)
Query: 67 NATNPPQNLF-TPSQSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTA 125
N ++PP+ + TP QS AFS +K SEF+ P N TL
Sbjct: 12 NDSSPPKRIKDTPFQS---AFSNLKKSEFFKEP----------ISNSTLE---------- 48
Query: 126 SASASSSQSIQSR-NAILVSQRQKG----NPLLKYIRNVRWAFADVVCDYLVGQNSCALY 180
+S+ +I R NA+LVS +Q + +LK++ + ++ + L
Sbjct: 49 ----TSTATISGRTNAVLVSPKQVDIADPHHVLKHLTRIS----------ILADMTIMLA 94
Query: 181 LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGS 240
+ E+ G+ +ET K YE KP D I + D+ +L ALT+VRSVNKTD +TL STFG+
Sbjct: 95 WNAEDAGKIIETYKRYEVKPPDDIMERSDSAPHQKLIGALTTVRSVNKTDAMTLLSTFGT 154
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
L I+ A LA CPG G K ++LY HEPF R
Sbjct: 155 LDDIVRAQPNTLALCPGFGLHKAQKLYKALHEPFLR 190
>gi|443921170|gb|ELU40907.1| Rad10 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 314
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 150 NPLLKYIRNVRWAFADVVCDYLVG---QNSCALYLSLEECGRYLETIKVYENKPADLIQG 206
N +L + +V + + C +L ++ ++ +E G+YL T K+YE K +I+
Sbjct: 65 NRILLILCDVVSSMSPFACFFLTAPKSEHQSSIKELTKEVGQYLATYKLYEFKSHQIIKE 124
Query: 207 QMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRL 266
++D DY S L ALT+VR VNKTDV+TL + FGS S+I A+ ED+ CPG G KV+RL
Sbjct: 125 RVDNDYQSVLRAALTTVRGVNKTDVMTLKTNFGSFSNIAHAATEDMQLCPGFGPTKVRRL 184
Query: 267 YDTFHEPF 274
Y+ F+ PF
Sbjct: 185 YEAFNRPF 192
>gi|388857631|emb|CCF48780.1| related to dna excision repair protein ercc-1 [Ustilago hordei]
Length = 363
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 107/243 (44%), Gaps = 78/243 (32%)
Query: 95 YNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLK 154
+N PP PP NP L V AS+SS+ ILV+ Q+GNPLL
Sbjct: 44 HNSPPAPP--------NPLLQPRPRPKVRGKLASSSST--------ILVNPCQRGNPLLS 87
Query: 155 YIRNVRWAFADVV---------------------------------------------CD 169
IR++ W ++D+V CD
Sbjct: 88 SIRSLGWEYSDIVPDYVVGVSSCILFLSIRYHRLHPEYIHTRIAKLSNMFTLRILLLLCD 147
Query: 170 Y--------------LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
L+ + + S EE GRY+ET K +E+KP D I+ ++ DYLS+
Sbjct: 148 VKDHAPAIKELTKTALINNLTLIVAWSAEEAGRYVETYKSFEHKPPDPIKERVPEDYLSQ 207
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMED---LARCPGIGERKVKRLYDTFHE 272
LT+ LT VR VN+TDV+TL + +GSL ++ A + L PG GE K KRL D +
Sbjct: 208 LTNVLTQVRGVNRTDVLTLITRYGSLKGVIRACKHETAGLQMSPGFGEIKAKRLRDVVTQ 267
Query: 273 PFK 275
PF+
Sbjct: 268 PFR 270
>gi|378729231|gb|EHY55690.1| DNA excision repair protein ERCC-1 [Exophiala dermatitidis
NIH/UT8656]
Length = 387
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 69/221 (31%)
Query: 124 TASASASSSQSIQSR----------NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVG 173
T++A+ +S+ +Q R +AILVS RQKGNP+LK++ +V W +A++ CDY++G
Sbjct: 31 TSTATGGASKVVQPRPQALPQRQGPSAILVSTRQKGNPILKHVTSVPWEWAEIPCDYVLG 90
Query: 174 QNSCALYLSLEE--------CGRYLETIKVY----------------------------- 196
+CAL+LSL+ GR + K+Y
Sbjct: 91 ATTCALFLSLKYHRLHPEYIYGRIRQLGKLYNLRILLTMVDITNHEEALKELSKTSMINN 150
Query: 197 ----------------------ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
E+ A I+ Y LT +T+ R++NKTD +L
Sbjct: 151 LTLILCWSSQEAGRYLELYKSYEHASAASIRAHQAETYQESLTEFVTTPRNINKTDAASL 210
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
S FGSL + ++A E+LA PG GE+K++ T EPF+
Sbjct: 211 ISNFGSLRNAINAQPEELALVPGWGEKKIRAWVTTVREPFR 251
>gi|322698863|gb|EFY90630.1| mating-type switching protein swi10 [Metarhizium acridum CQMa 102]
Length = 416
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 86/194 (44%), Gaps = 59/194 (30%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL----------------- 183
ILVS RQ+GNP+L IR++ W ++D+ D+++G +CAL+LSL
Sbjct: 75 ILVSPRQRGNPVLTSIRSLPWEYSDIPADFVMGLTTCALFLSLKYHRLHPEYIYTRIRNL 134
Query: 184 ------------------EEC------------------------GRYLETIKVYENKPA 201
E+C GRYLE K YEN
Sbjct: 135 QGKYNLRILLTMVDIPNHEDCLRELSKTSLVNNVTIILCWSAAEAGRYLELYKSYENASF 194
Query: 202 DLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGER 261
I+GQ + Y +L +T RS+NK+D V L + FGSL + ++A E L G G
Sbjct: 195 AAIRGQQASSYADKLVDFVTVPRSLNKSDAVALVANFGSLKNAINAEQEQLGMIGGWGGI 254
Query: 262 KVKRLYDTFHEPFK 275
KVKR EPF+
Sbjct: 255 KVKRWSSAIEEPFR 268
>gi|358365934|dbj|GAA82555.1| mating-type switching protein Swi10 [Aspergillus kawachii IFO 4308]
Length = 326
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 125/296 (42%), Gaps = 90/296 (30%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE---- 185
Q++ SR+ AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CAL+LSL+
Sbjct: 32 QALPSRSGPSAILVSTRQKGNPILNHIKLLPWEYADIPADYVVGNTTCALFLSLKYHRLH 91
Query: 186 -----------CGRYL-------------------------------------------- 190
G+YL
Sbjct: 92 PEYIYSRIRLIAGKYLLRIILVIVDIPNHEESLKELSKTSIVNNMTLILCWSAPEAAHYL 151
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K EN I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E
Sbjct: 152 ELFKSSENSQPTAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAVNAQPE 211
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK----------RVVSSHPPIPETPSQKD--VERSSV 298
++ PG GE+KVK+ T E F+ + SH E Q+D S
Sbjct: 212 QISAVPGWGEKKVKQWCSTVREGFRVESTKRKTRGGIAGSH-ATGEVEGQEDKPFNPSET 270
Query: 299 NEVTEVE---KDTED---------VNKRRKKET---ESTVKSALSAAFAKYADKIG 339
NE T E D ED V +RR +E+ E + + AA AKY + G
Sbjct: 271 NEDTAAETILADAEDGRLEARRQAVEERRMQESSQQEEEMSEGIMAALAKYREDGG 326
>gi|328776660|ref|XP_623717.3| PREDICTED: DNA excision repair protein ERCC-1 [Apis mellifera]
Length = 255
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 107/233 (45%), Gaps = 42/233 (18%)
Query: 81 SFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQN------------------- 121
+F AF+ ++ SEF+N P P+ + + TL +Q
Sbjct: 22 TFQSAFNELRKSEFFNEAIPGPSKAKDSLKFSTLLVSLKQKGNPLLKFINNVPWEYSEII 81
Query: 122 ----VGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADV----------- 166
+G + + S N + +R K L + N+R V
Sbjct: 82 PDYVMGKTTCALFLSIRYHQLNPDYIHERLKT---LGNMYNLRVLLVQVDVPEPHHALKH 138
Query: 167 ---VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSV 223
+C ++ + L + E+ G+ +ET K+YENKP D I + DT +L +ALT++
Sbjct: 139 LTRIC--ILADLTLMLAWNPEDAGKIIETYKIYENKPPDAIMDRSDTAPYQKLVNALTTI 196
Query: 224 RSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
RSVNKTD TL STFG+LS ++ LA CPGIG +K +R++ T HE F R
Sbjct: 197 RSVNKTDATTLLSTFGTLSELIKTQSNTLALCPGIGLQKAERIHKTLHEQFLR 249
>gi|328851214|gb|EGG00371.1| hypothetical protein MELLADRAFT_39770 [Melampsora larici-populina
98AG31]
Length = 191
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 64/90 (71%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHI 244
E RY++ K +E KP DLI+ + D YL++L+ LT+V +NKTDV+TL S+FGS +I
Sbjct: 99 EAARYIQLFKSFERKPPDLIKERSDNTYLAQLSSVLTTVNGLNKTDVLTLASSFGSFRNI 158
Query: 245 MDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+AS DL RC G+GE+KV RL D+F+ PF
Sbjct: 159 TEASQADLLRCAGLGEKKVNRLIDSFNSPF 188
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 146 RQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
RQKGNP+L +++V W D+VCDY VG + L+LSL
Sbjct: 1 RQKGNPILNLLQSVPWEHGDIVCDYQVGLTTGLLFLSL 38
>gi|383848015|ref|XP_003699648.1| PREDICTED: DNA excision repair protein ERCC-1-like [Megachile
rotundata]
Length = 249
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
VC ++ + L + E+ G+ +ET K+YENKP D I + DT ++ +ALT++RSV
Sbjct: 137 VC--ILADLTLMLAWNAEDAGKIIETYKIYENKPPDAIMERSDTAPYQKIVNALTTIRSV 194
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
NKTD TL STFG+LS+++ LA CPGIG +K +R++ HEPF R
Sbjct: 195 NKTDATTLLSTFGTLSNLIKTQPNTLALCPGIGLQKAERIHKVLHEPFLR 244
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N +LV+ +QKGNPLLKY+ NV W ++++V DY++G+ SCAL+LS+
Sbjct: 48 NTLLVNLKQKGNPLLKYVTNVPWEYSEIVPDYVMGKTSCALFLSI 92
>gi|156551812|ref|XP_001603974.1| PREDICTED: DNA excision repair protein ERCC-1-like [Nasonia
vitripennis]
Length = 261
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
+C ++ + L S EE G+ +ET K YENKP D+I + DT +L +ALT+VRSV
Sbjct: 148 IC--ILADLTLMLAWSAEEAGKIIETYKAYENKPPDMIMERSDTAPHQKLINALTTVRSV 205
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
NKTD +TL STFG+ I++A LA CPG G +K +RL T HE F R
Sbjct: 206 NKTDAMTLLSTFGTFKDIIEAPSASLALCPGFGPQKAQRLNKTLHETFLR 255
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 23/105 (21%)
Query: 79 SQSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSR 138
+ SF AFS +K SEF+ P S GE SS +
Sbjct: 22 ANSFGAAFSNLKKSEFFKDELPE-------------STKGE----------SSKNKNTNL 58
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N +L++ +Q+GNPLLK+I +V + +++++ DY+VG+ SC L+LSL
Sbjct: 59 NPLLINPKQRGNPLLKHITSVPYEYSEIIPDYVVGKTSCILFLSL 103
>gi|195056714|ref|XP_001995148.1| GH22789 [Drosophila grimshawi]
gi|193899354|gb|EDV98220.1| GH22789 [Drosophila grimshawi]
Length = 254
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 60/195 (30%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRYL 190
++LV +Q+GNP+LK I NV F D++ DY+VG+ SC L+LSL+ C R
Sbjct: 57 SVLVHSKQRGNPILKSILNVPLEFRDDIIPDYVVGRTSCILFLSLKYHNLNPDYICQRLK 116
Query: 191 ETIKVY---------------------------------------------------ENK 199
K+Y E +
Sbjct: 117 ALGKLYELRVLLVQVDTPEPHNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKR 176
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P DLI +++++ +L ALT+++ VNKTD VTL FG+L ++++AS E LA+ G+G
Sbjct: 177 PPDLIMERVESNPHQKLVAALTNIKPVNKTDAVTLLQIFGNLENLINASEERLAQVMGLG 236
Query: 260 ERKVKRLYDTFHEPF 274
RK K+LY T HEPF
Sbjct: 237 PRKAKKLYKTLHEPF 251
>gi|195381327|ref|XP_002049404.1| GJ20764 [Drosophila virilis]
gi|194144201|gb|EDW60597.1| GJ20764 [Drosophila virilis]
Length = 256
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRY 189
+++LV +Q+GNP+LK I NV F D++ DY+VG+ SC L+LSL+ C R
Sbjct: 58 HSVLVHSKQRGNPILKSILNVPLEFRDDIIPDYVVGRTSCILFLSLKYHNLNPDYICQRL 117
Query: 190 LETIKVY---------------------------------------------------EN 198
K+Y E
Sbjct: 118 KALGKMYELRVLLVQVDTPEPHNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEK 177
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+P DLI +++++ +L ALT+++ VNKTD VT+ FG+L ++++AS E LA+ G+
Sbjct: 178 RPPDLIMERVESNPHQKLVAALTNIKPVNKTDAVTILQIFGNLENLINASEERLAQVMGL 237
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T HEPF
Sbjct: 238 GPRKAKKLYKTLHEPF 253
>gi|390601934|gb|EIN11327.1| DNA repair protein rad10 [Punctularia strigosozonata HHB-11173 SS5]
Length = 363
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
VC L+ + + S EE G YL T K +E++P D+I+ ++D DY S L ++LTS+ V
Sbjct: 112 VC--LINNITIIVAWSPEEAGMYLSTFKQFEHRPPDMIKERVDKDYFSVLRNSLTSISKV 169
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPE 286
NKTDV TL ++FGS + I AS + L + PG G+ KV+R+ D F +PF+ V+ P
Sbjct: 170 NKTDVETLRTSFGSFARIACASSDQLQKLPGFGQVKVRRIKDAFEKPFRHHVTDSVPTTN 229
Query: 287 T 287
T
Sbjct: 230 T 230
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
I+V+ Q+ NP+L++IRNV F D++ DY VG+ + L+LSL+
Sbjct: 25 IIVNPAQRLNPVLEHIRNVGKEFGDILSDYQVGRTTGVLFLSLK 68
>gi|195583504|ref|XP_002081557.1| GD11080 [Drosophila simulans]
gi|194193566|gb|EDX07142.1| GD11080 [Drosophila simulans]
Length = 259
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 63/230 (27%)
Query: 105 PPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFA 164
P T+ NP S E + S + + + + +LV +Q+GNP+LK I NV F
Sbjct: 30 PAATAVNPAPSNSTEP---SGSGRPAPGKPASNPHCVLVHSKQRGNPILKSILNVPLEFR 86
Query: 165 D-VVCDYLVGQNSCALYLSLEE--------CGRYLETIKVY------------------- 196
D +V DY+VG+ SC LYLSL+ C R K+Y
Sbjct: 87 DDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALK 146
Query: 197 --------------------------------ENKPADLIQGQMDTDYLSRLTHALTSVR 224
E +P DLI +++++ +L ALT+++
Sbjct: 147 SLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIK 206
Query: 225 SVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
VNKTD L TFG+L +I++AS E L++ G+G RK K+LY T EPF
Sbjct: 207 PVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQEPF 256
>gi|170117319|ref|XP_001889847.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164635187|gb|EDQ99498.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 209
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL------------- 183
S N I++S Q+GN +L+ IRNV F D+V DY VG+ + L+LSL
Sbjct: 8 SGNNIIISPLQRGNQVLQCIRNVGQEFGDIVADYQVGRTTGVLFLSLRYHRLHPEYIHAR 67
Query: 184 -EECGR---------------------------------------------YLETIKVYE 197
E GR YL T K +E
Sbjct: 68 IERLGRSYNLRILLILCDITEHRDSIRELTKVCLINNVTVIVSFSFDEAGHYLSTFKQFE 127
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
+KP DLI+ ++D DY S L LTS+ VNKTDV TL ++FGS + I A+ + L PG
Sbjct: 128 HKPPDLIKERVDKDYHSTLRTTLTSIGKVNKTDVETLRTSFGSFADISRATSDQLQNLPG 187
Query: 258 IGERKVKRLYDTFHEPFK 275
G+ KVK + + F +PF+
Sbjct: 188 FGQVKVKNVKNVFDKPFR 205
>gi|357616346|gb|EHJ70143.1| excision repair cross-complementing 1 ercc1 [Danaus plexippus]
Length = 269
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 66/228 (28%)
Query: 106 PTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFAD 165
PT+ + P + GE V + +++++ + +LV+Q+Q+GNPLLK+I +V W + +
Sbjct: 17 PTSPKKP---KSGEDVVAGTAPKPTATKT----HCVLVNQKQRGNPLLKFITSVPWEYDE 69
Query: 166 VVCDYLVGQNSCALYLS--------------LEECG-----RYL---------------- 190
+V DY +G+ L+LS L+E G R L
Sbjct: 70 IVPDYEIGKTIGILFLSLRYHNLNPDYINNRLKELGKKYDLRVLLVQVDLKDPHVALKNL 129
Query: 191 ------------------ETIKVYEN------KPADLIQGQMDTDYLSRLTHALTSVRSV 226
E+ K+ EN KP D I +++ D ++ +AL+S++ V
Sbjct: 130 TRICLLTDMTLMLAWSPEESAKIIENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPV 189
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
NKTD +TL + FG+L +I+ A+ + LA CPG G K K+L+ HEPF
Sbjct: 190 NKTDAMTLITKFGTLENIIKATEQRLADCPGFGVTKAKKLHKALHEPF 237
>gi|414870733|tpg|DAA49290.1| TPA: hypothetical protein ZEAMMB73_493341 [Zea mays]
Length = 139
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 85/130 (65%), Gaps = 6/130 (4%)
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPP---IPETPSQKDVE-R 295
SLS IM+ SM++LARCPGIGERKV+RLYDTFHEPFKRV + P +P+TP ++ + +
Sbjct: 10 SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQ 69
Query: 296 SSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKI-GKKKNRSSQVGETSVS 354
S + + ++ E + +K + S V+SAL+ AFAKY++KI + ++ ++ GE S
Sbjct: 70 PSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKIRSQGRDAPNEAGE-STG 128
Query: 355 NSGTENSNSG 364
S E +G
Sbjct: 129 GSTVEAERAG 138
>gi|395331255|gb|EJF63636.1| DNA repair protein rad10 [Dichomitus squalens LYAD-421 SS1]
Length = 371
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 59/205 (28%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADV-------------------------------- 166
N I+V+ Q+GNP+L+ +RNV + D+
Sbjct: 28 NNIIVNPCQRGNPILECVRNVGKEYGDILADYQVGRTTGVLFLSLRYHRLHPEYIHQRIE 87
Query: 167 -------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
+CD L+ + + + + EE G YL T K +E+K
Sbjct: 88 KLGHAYNLRILLLMCDVSEHQEPIRELTKICLINEITVMVAWNAEEAGYYLSTYKQFEHK 147
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P DLI+ ++D DY S L ALTS+ VNKTDV TL ++FGS + I AS E L PG G
Sbjct: 148 PPDLIKERVDKDYNSMLRTALTSISKVNKTDVETLRTSFGSFATIAKASSEQLQNLPGFG 207
Query: 260 ERKVKRLYDTFHEPFKRVVSSHPPI 284
+ K KR+ D F++PF+ +S P+
Sbjct: 208 QVKAKRIQDAFNKPFRNNSTSALPV 232
>gi|194754132|ref|XP_001959351.1| GF12823 [Drosophila ananassae]
gi|190620649|gb|EDV36173.1| GF12823 [Drosophila ananassae]
Length = 236
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 60/220 (27%)
Query: 115 SQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVG 173
S G T++++ ++++ + +++LV +Q+GNP+LK I+NV + D+V DY+VG
Sbjct: 14 SAGMAATPSTSNSTVATAKPSSNPHSVLVHSKQRGNPILKSIQNVPLEYRDDIVPDYVVG 73
Query: 174 QNSCALYLSLEE--------CGRYLETIKVY----------------------------- 196
+ SC LYLSL+ C R K+Y
Sbjct: 74 RTSCVLYLSLKYHNLNPDYICQRLKTLGKMYDLRVLLVQVDTPEPHNALKSLTRISLLAD 133
Query: 197 ----------------------ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
E +P DLI +++++ +L ALT+++ VNKTD VTL
Sbjct: 134 LTMMLAWNHEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLVTALTNIKPVNKTDAVTL 193
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
TFG+L +I+ AS E L++ G+G RK K+L+ T EPF
Sbjct: 194 LQTFGNLGNIITASEERLSQVIGLGPRKAKKLHKTLQEPF 233
>gi|195436244|ref|XP_002066079.1| GK22170 [Drosophila willistoni]
gi|194162164|gb|EDW77065.1| GK22170 [Drosophila willistoni]
Length = 259
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 110/240 (45%), Gaps = 67/240 (27%)
Query: 100 PPPANPPTTSQNPTLSQGGEQNV-----GTASASASSSQSIQSRNAILVSQRQKGNPLLK 154
P PA P TS T NV G+A ++A S+ + + +LV +Q+GNP+LK
Sbjct: 19 PTPAKQPKTSSAAT--SDSHSNVSASTSGSAVSAAPVSKPASNPHNVLVHTKQRGNPILK 76
Query: 155 YIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRYLETIKVYENKP----- 200
+I NV + D+V DY+VG+ SC LYLSL+ C R K YE +
Sbjct: 77 FILNVPLEYRDDIVPDYVVGRTSCILYLSLKYHNLNPDYICQRLKALGKSYELRVLLVQV 136
Query: 201 ------------------ADLIQ---------GQMDTDY-------------------LS 214
ADL G+M Y
Sbjct: 137 DTPEPHNALKSLTRISLLADLTMMLAWNAEEAGKMIETYKQFEKRSPDLIMERVESNPHQ 196
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+L ALT+++ VNKTD VTL TFG+L ++++AS E L++ G+G RK K+LY T EPF
Sbjct: 197 KLVAALTNIKPVNKTDAVTLLQTFGNLENLINASEERLSQVMGLGPRKAKKLYKTLQEPF 256
>gi|195609050|gb|ACG26355.1| hypothetical protein [Zea mays]
Length = 134
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 73/103 (70%), Gaps = 4/103 (3%)
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPP---IPETPSQKDVE-R 295
SLS IM+ SM++LARCPGIGERKV+RLYDTFHEPFKRV + P +P+TP ++ + +
Sbjct: 5 SLSQIMNGSMDELARCPGIGERKVRRLYDTFHEPFKRVPARPRPNLVVPDTPDREKAKGQ 64
Query: 296 SSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKI 338
S + + ++ E + +K + S V+SAL+ AFAKY++KI
Sbjct: 65 PSSTDGSSLQDAVEKPDASKKTKKGSDVRSALTVAFAKYSEKI 107
>gi|195334481|ref|XP_002033906.1| GM21575 [Drosophila sechellia]
gi|194125876|gb|EDW47919.1| GM21575 [Drosophila sechellia]
Length = 259
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFAD-VVCDYLVGQNSCALYLSLEE--------CGRY 189
+ +LV +Q+GNP+LK I NV F D +V DY+VG+ SC LYLSL+ C R
Sbjct: 61 HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRL 120
Query: 190 LETIKVY---------------------------------------------------EN 198
K+Y E
Sbjct: 121 KALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEK 180
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+P DLI +++++ +L ALT+++ VNKTD L TFG+L +I++AS E L++ G+
Sbjct: 181 RPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGL 240
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T EPF
Sbjct: 241 GPRKAKKLYKTLQEPF 256
>gi|16768600|gb|AAL28519.1| GM10122p [Drosophila melanogaster]
Length = 244
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFAD-VVCDYLVGQNSCALYLSLEE--------CGRY 189
+ +LV +Q+GNP+LK I NV F D +V DY+VG+ SC LYLSL+ C R
Sbjct: 46 HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRL 105
Query: 190 LETIKVY---------------------------------------------------EN 198
K+Y E
Sbjct: 106 KALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEK 165
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+P DLI +++++ +L ALT+++ VNKTD L TFG+L +I++AS E L++ G+
Sbjct: 166 RPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGL 225
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T EPF
Sbjct: 226 GPRKAKKLYKTLQEPF 241
>gi|17137732|ref|NP_477468.1| Ercc1 [Drosophila melanogaster]
gi|5020078|gb|AAD38010.1|AF146797_1 nucleotide excision repair protein ERCC1 [Drosophila melanogaster]
gi|7303131|gb|AAF58196.1| Ercc1 [Drosophila melanogaster]
Length = 259
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 104/230 (45%), Gaps = 63/230 (27%)
Query: 105 PPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFA 164
P T+ NP S E + S + + + + +LV +Q+GNP+LK I NV F
Sbjct: 30 PAATAVNPAPSNSTEP---SGSGRPAPGKPASNPHCVLVHSKQRGNPILKSILNVPLEFR 86
Query: 165 D-VVCDYLVGQNSCALYLSLEE--------CGRYLETIKVY------------------- 196
D +V DY+VG+ SC LYLSL+ C R K+Y
Sbjct: 87 DDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALK 146
Query: 197 --------------------------------ENKPADLIQGQMDTDYLSRLTHALTSVR 224
E +P DLI +++++ +L ALT+++
Sbjct: 147 SLTRISLLADLTMMLAWNAEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIK 206
Query: 225 SVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
VNKTD L TFG+L +I++AS E L++ G+G RK K+LY T EPF
Sbjct: 207 PVNKTDAAALLHTFGNLGNIINASEERLSQVMGLGPRKAKKLYKTLQEPF 256
>gi|342320051|gb|EGU11994.1| Hypothetical Protein RTG_01874 [Rhodotorula glutinis ATCC 204091]
Length = 332
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 65/93 (69%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
S +E GRYLET K +E KP DLI+ ++D Y++ +T ALTSVR VNK DV TL S FGS
Sbjct: 211 SAQEAGRYLETYKSFERKPPDLIRERVDDSYMAHMTSALTSVRGVNKLDVTTLISNFGSF 270
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
++++ A L+ PG+G++KV+RL + F PF
Sbjct: 271 ANLVLAEPAKLSTLPGLGDKKVRRLREAFTAPF 303
>gi|242003235|ref|XP_002422661.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus
corporis]
gi|212505472|gb|EEB09923.1| DNA excision repair protein ERCC-1, putative [Pediculus humanus
corporis]
Length = 260
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 92/198 (46%), Gaps = 65/198 (32%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAF-----ADVV-----C-------------DYL-- 171
S NAIL +GNPLLKYI +V W F AD V C DY+
Sbjct: 27 SGNAIL-----RGNPLLKYITHVPWEFDDRMLADYVMGQTTCALYLSVRYHNLNPDYIHD 81
Query: 172 ----VGQN-------------------------------SCALYLSLEECGRYLETIKVY 196
+G+N + L S EE G+ +E K+Y
Sbjct: 82 RLKILGKNYLLRVLLVMVDIKDPHHAIKTLTRISILANLTIMLCRSSEEAGKIIERYKIY 141
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
+NKP DLI + + D SR+ AL ++RS+NKTD L ST+G+L I+ AS L+ CP
Sbjct: 142 QNKPPDLIMEKKEADPYSRIMSALITIRSINKTDATILLSTYGTLRGILKASENSLSLCP 201
Query: 257 GIGERKVKRLYDTFHEPF 274
GIG +K RLY T HE F
Sbjct: 202 GIGPQKASRLYKTLHESF 219
>gi|449546425|gb|EMD37394.1| hypothetical protein CERSUDRAFT_114066 [Ceriporiopsis subvermispora
B]
Length = 339
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVV----------------------------- 167
S N I+++ RQ+ NP+L+ IRNV F D+V
Sbjct: 30 SGNNIIINPRQRQNPVLQCIRNVGKEFGDIVADFQVGRTTGVLFLSLKYHRLFPAYIHQR 89
Query: 168 ----------------CDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
CD L+ + + + EE G YL T K +E
Sbjct: 90 IEELGHSYNLRILLIQCDVSDHQETIRELTKTCLINNITIMVAWTAEEVGHYLSTYKQFE 149
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
+KP D+I+ ++D DY S L ALTS+ VNKTDV TL ++ GS + I A+ E L PG
Sbjct: 150 HKPPDMIKERIDKDYYSILRTALTSISRVNKTDVETLRTSLGSFADIARATSEQLQSLPG 209
Query: 258 IGERKVKRLYDTFHEPFK 275
G+ K +R+ D F +PF+
Sbjct: 210 FGQVKARRMKDAFEKPFR 227
>gi|169773973|ref|XP_001821455.1| mating-type switch/DNA repair protein Swi10/Rad10 [Aspergillus
oryzae RIB40]
gi|238492006|ref|XP_002377240.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus flavus NRRL3357]
gi|83769316|dbj|BAE59453.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697653|gb|EED53994.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus flavus NRRL3357]
gi|391869113|gb|EIT78318.1| structure-specific endonuclease ERCC1-XPF, ERCC1 component
[Aspergillus oryzae 3.042]
Length = 342
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 113/260 (43%), Gaps = 64/260 (24%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE---- 185
Q++ SR+ AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CAL+LSL+
Sbjct: 48 QALPSRSTPSAILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATTCALFLSLKYHRLH 107
Query: 186 -----------CGRYL-------------------------------------------- 190
G+YL
Sbjct: 108 PEYIYSRIRLLAGKYLLRILLIMVDIPNHEDSLKELSKTSIINNLTLTLCWSAPEAAHYL 167
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K EN I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E
Sbjct: 168 ELFKSSENSQPTAIRTQQAQSYKESLVEFVTAPRSINKSDAASLISTFGSLQNAINAQPE 227
Query: 251 DLARCPGIGERKVKRLYDTFHEPFKRVVSSH--PPIPETPSQKDVERSSVNEVTEVEKDT 308
++ PG GE+KV++ + E F+ S P + SQK+ E +S N +
Sbjct: 228 QISAVPGWGEKKVRQWCNAVREDFRVEASKKIAAPAKDLNSQKNNEPTSRNTEMSTSMNA 287
Query: 309 EDVNKRRKKETESTVKSALS 328
D ++ ES V +S
Sbjct: 288 HDEDEEAILAAESEVAHVVS 307
>gi|195486112|ref|XP_002091366.1| GE13614 [Drosophila yakuba]
gi|194177467|gb|EDW91078.1| GE13614 [Drosophila yakuba]
Length = 259
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRY 189
+ +LV +Q+GNP+LK I NV F D+V DY+VG+ SC LYLSL+ C R
Sbjct: 61 HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCILYLSLKYHNLNPDYICQRL 120
Query: 190 LETIKVY---------------------------------------------------EN 198
K+Y E
Sbjct: 121 KALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEK 180
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+P DLI +++++ +L ALT+++ VNKTD L TFG+L +I++AS E L++ G+
Sbjct: 181 RPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGL 240
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T EPF
Sbjct: 241 GPRKAKKLYKTLQEPF 256
>gi|392562583|gb|EIW55763.1| hypothetical protein TRAVEDRAFT_171645 [Trametes versicolor
FP-101664 SS1]
Length = 377
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 59/207 (28%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVV----------------------------- 167
S N I+++ Q+GNP+L+ +RNV F +++
Sbjct: 23 SGNNIIINPCQRGNPILESVRNVGKEFGEILADYQVGKTTGVLFLSLRYHRLHPEYIHQR 82
Query: 168 ----------------CDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
CD L+ + + + + EE G YL T K +E
Sbjct: 83 IEKLGHSYNLRVLLLMCDVSEHQDPIRELTKICLINEMTIMVAWNPEEAGYYLATYKQFE 142
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
++P DLI+ ++D DY S L ALT++ VNKTDV TL ++FGS + I AS E L PG
Sbjct: 143 HRPPDLIKERVDKDYRSVLRTALTNISKVNKTDVETLRTSFGSFAAISRASSEQLQNLPG 202
Query: 258 IGERKVKRLYDTFHEPFKRVVSSHPPI 284
G+ K KR+ D F++PF+ +S PI
Sbjct: 203 FGQVKAKRIQDAFNKPFRNNSTSALPI 229
>gi|194882957|ref|XP_001975576.1| GG20484 [Drosophila erecta]
gi|190658763|gb|EDV55976.1| GG20484 [Drosophila erecta]
Length = 259
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRY 189
+ +LV +Q+GNP+LK I NV F D+V DY+VG+ SC LYLSL+ C R
Sbjct: 61 HCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYLSLKYHNLNPDYICQRL 120
Query: 190 LETIKVYE---------------------------------------------------N 198
K+YE
Sbjct: 121 KVLGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWNAEEAGKIIETYKQFEK 180
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+P DLI +++++ +L ALT+++ VNKTD L TFG+L +I++AS E L++ G+
Sbjct: 181 RPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLGNIINASEERLSQVMGL 240
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T EPF
Sbjct: 241 GPRKAKKLYKTLQEPF 256
>gi|164660744|ref|XP_001731495.1| hypothetical protein MGL_1678 [Malassezia globosa CBS 7966]
gi|159105395|gb|EDP44281.1| hypothetical protein MGL_1678 [Malassezia globosa CBS 7966]
Length = 284
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 59/199 (29%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFAD------------------------------ 165
QS ++ILV+ Q+GNP+L++I+ V W +AD
Sbjct: 24 QSSSSILVNSCQRGNPVLQHIKGVAWEYADIVPDYQVGISNGVLFLSLRYHRLHPEYIHM 83
Query: 166 ---------------VVCDY--------------LVGQNSCALYLSLEECGRYLETIKVY 196
VVCD LV Q + S EE YLE K +
Sbjct: 84 RIQRLAHMYTLRILLVVCDVNDHQPAIRELTKVALVNQIVMIVAWSAEEAAHYLEIYKAF 143
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
E KP D+I+ ++ D LS L LT+VR +NKTDV+TL + + + I+ S E+L P
Sbjct: 144 EQKPPDMIRAKVGDDSLSVLQSVLTNVRGINKTDVLTLSTRYHTFRDIVHESSENLFMLP 203
Query: 257 GIGERKVKRLYDTFHEPFK 275
G+G+ K + L F +PF+
Sbjct: 204 GMGDTKARNLTRAFRQPFR 222
>gi|323450559|gb|EGB06440.1| hypothetical protein AURANDRAFT_29330 [Aureococcus anophagefferens]
Length = 245
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 61/195 (31%)
Query: 141 ILVSQRQKGNPLLKYIR-------------------------NVR--------------- 160
+LVS+RQ+GNPLLK++R ++R
Sbjct: 5 LLVSERQRGNPLLKHLRNVAWRFEKKLVPDYVVGEKHCAVFISIRYHLLKPSYLSRRLAE 64
Query: 161 -----WAFADVVC--------------DYLVGQNSCALYL--SLEECGRYLETIKVYENK 199
W ++C + L + C L L S EC RYLE K YE
Sbjct: 65 LKAETWRLRVLLCHVDLDDAAKALHELNVLAVKAECTLILGHSDRECARYLECFKAYERN 124
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
A I+ ++D + ++L ALT+++ VNKTDV TL F + ++ A +E+L PG+G
Sbjct: 125 SAACIKDKVDGTHHAQLADALTTIKPVNKTDVATLAGRFATFRDLLRAPVEELRDAPGLG 184
Query: 260 ERKVKRLYDTFHEPF 274
++KV RLYD FH PF
Sbjct: 185 DKKVARLYDAFHVPF 199
>gi|237835939|ref|XP_002367267.1| DNA repair protein rad10 domain-containing protein [Toxoplasma
gondii ME49]
gi|211964931|gb|EEB00127.1| DNA repair protein rad10 domain-containing protein [Toxoplasma
gondii ME49]
gi|221506056|gb|EEE31691.1| DNA repair protein Rad10 domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 409
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 62/93 (66%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
L+EC L+ +K YE KPAD + ++D + +R+ LT++ +NKTDV+TL S FG++
Sbjct: 267 CLQECAGVLQLLKAYEKKPADTLLAKLDAKHCNRVLETLTAISPLNKTDVLTLASAFGNV 326
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+I+ AS + L RCPGIGE+K +R+ +PF
Sbjct: 327 KNILLASRQALERCPGIGEKKARRILKVVRQPF 359
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQKGNPLLK+I V FA + D+LVG ++C L+LSL RY + Y +K
Sbjct: 166 LVISLRQKGNPLLKFITAVPHTFAYIAPDFLVGPSACVLFLSL----RYHQLFPSYLSKR 221
Query: 201 A-DLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
DL G+ +L L H V VTL + S ++ +++ C G+
Sbjct: 222 IEDLADGRYTHKFL--LLHVDLEVPDAALAQ-VTLLAFHHCFSLLLGTCLQE---CAGV 274
>gi|221484889|gb|EEE23179.1| DNA repair protein Rad10 domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 424
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 62/93 (66%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
L+EC L+ +K YE KPAD + ++D + +R+ LT++ +NKTDV+TL S FG++
Sbjct: 282 CLQECAGVLQLLKAYEKKPADTLLAKLDAKHCNRVLETLTAISPLNKTDVLTLASAFGNV 341
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+I+ AS + L RCPGIGE+K +R+ +PF
Sbjct: 342 KNILLASRQALERCPGIGEKKARRILKVVRQPF 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQKGNPLLK+I V FA + D+LVG ++C L+LSL RY + Y +K
Sbjct: 181 LVISLRQKGNPLLKFITAVPHTFAYIAPDFLVGPSACVLFLSL----RYHQLFPSYLSKR 236
Query: 201 A-DLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
DL G+ +L L H V VTL + S ++ +++ C G+
Sbjct: 237 IEDLADGRYTHKFL--LLHVDLEVPDAALAQ-VTLLAFHHCFSLLLGTCLQE---CAGV 289
>gi|388578772|gb|EIM19109.1| DNA repair protein rad10 [Wallemia sebi CBS 633.66]
Length = 317
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADV------------------------------ 166
S+NA+LV+ Q+GNP+LK +RNV W + D+
Sbjct: 32 SKNAVLVNSCQRGNPILKEVRNVSWEYTDIVPDYVAGSSTGILFLSLRYHRLHPEYIHTR 91
Query: 167 ---------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
+CD L+ + + S ++ G YL +
Sbjct: 92 VERLGAMYQLRILLLMCDVTDSEASIKEITKTCLINNITVVIAWSPQQAGHYLSLYLQLD 151
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
NKP D ++ + TDY S + +ALT+V+ +NKTDV L + FGS+ +I+ AS +++++CPG
Sbjct: 152 NKPPDSLREKSSTDYHSMVANALTTVKGINKTDVYQLLTRFGSIKNIVKASPDEISKCPG 211
Query: 258 IGERKVKRLYDTFHEPFK 275
G+ KV+R+ + F FK
Sbjct: 212 FGDIKVRRMQEAFISLFK 229
>gi|402224423|gb|EJU04486.1| DNA repair protein rad10 [Dacryopinax sp. DJM-731 SS1]
Length = 363
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 59/195 (30%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEEC------------- 186
+I+V+ Q+GN +L I+NV W + + DY VG + L+LSL
Sbjct: 40 SIIVNPCQRGNTVLDAIKNVPWEYGQIAPDYQVGATTGVLFLSLRYHRLHPEYIHTRIGK 99
Query: 187 --GRYL--------------------------------------------ETIKVYENKP 200
GRY+ T K++E+KP
Sbjct: 100 LEGRYMLRVLLMMCDVTEHEEPIRELTKVCLINNLTIMVAWTPEEAGLYLSTYKLFEHKP 159
Query: 201 ADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE 260
D I+ ++D DY S L ALTS+R VNKTDV TL S GS++ I +AS E L CPG GE
Sbjct: 160 PDRIKERVDKDYTSLLRAALTSIRGVNKTDVTTLSSNIGSVAEIAEASEEALLTCPGFGE 219
Query: 261 RKVKRLYDTFHEPFK 275
K +R+ + F PF+
Sbjct: 220 VKSRRVVEAFQRPFR 234
>gi|119501268|ref|XP_001267391.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Neosartorya fischeri NRRL 181]
gi|119415556|gb|EAW25494.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Neosartorya fischeri NRRL 181]
Length = 341
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 62/234 (26%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE------------- 185
+AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CAL+LSL+
Sbjct: 57 SAILVSTRQKGNPILNHIKLLPWEYADIPADYVVGATACALFLSLKYHRLHPEYIYSRIK 116
Query: 186 --CGRYLETI--------------------------------------------KVYENK 199
G+Y+ I K EN
Sbjct: 117 ALGGKYMLRIILVMVDIENHEDSLKELSKTSIINNYTLMLCWSAPEAAHYLELYKSSENA 176
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 177 QPTAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAINAQPEQISAVPGWG 236
Query: 260 ERKVKRLYDTFHEPFKRVVSSHPPIPE---TPSQKDVERSSVNEVTEVEKDTED 310
E+KV++ + E F+ + PE P Q+ +V++ V+ D +D
Sbjct: 237 EKKVRQWTNAVREDFRVENAKKAKAPERNIEPEQRSSGLGTVSQTGPVDMDDDD 290
>gi|73536055|pdb|2A1J|B Chain B, Crystal Structure Of The Complex Between The C-Terminal
Domains Of Human Xpf And Ercc1
Length = 91
Score = 94.4 bits (233), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 60/78 (76%)
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 14 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 73
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 74 PQKARRLFDVLHEPFLKV 91
>gi|350631989|gb|EHA20357.1| hypothetical protein ASPNIDRAFT_190953 [Aspergillus niger ATCC
1015]
Length = 327
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 62/205 (30%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE---- 185
Q++ SR+ AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CAL+LSL+
Sbjct: 32 QALPSRSGPSAILVSTRQKGNPILNHIKLLPWEYADIPADYVVGNTTCALFLSLKYHRLH 91
Query: 186 -----------CGRYL-------------------------------------------- 190
G+YL
Sbjct: 92 PEYIYSRIRLIAGKYLLRIILVIVDIPNHEESLKELSKTSIVNNLTLILCWSAPEAAHYL 151
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K EN I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E
Sbjct: 152 ELFKSSENSQPTAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAVNAQPE 211
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK 275
++ PG GE+KV++ T E F+
Sbjct: 212 QISAVPGWGEKKVRQWCTTVREGFR 236
>gi|401413412|ref|XP_003886153.1| putative DNA repair protein rad10 domain-containing protein
[Neospora caninum Liverpool]
gi|325120573|emb|CBZ56127.1| putative DNA repair protein rad10 domain-containing protein
[Neospora caninum Liverpool]
Length = 446
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
SL+EC L+ +KVYE KPAD + ++D + +R+ ALT++ +NKTDV+TL S FG++
Sbjct: 279 SLQECAGILQLLKVYEKKPADALLAKLDAKHCNRVMEALTALSPLNKTDVLTLASAFGNV 338
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+I+ AS + L RC G+GE+K +++ +PF
Sbjct: 339 KNILLASRQALERCSGVGEKKARKILRVVRQPF 371
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
++++ RQKGN LL++I V FA + D+LVG ++ L++SL RY + Y K
Sbjct: 178 LIIALRQKGNALLRFITAVPHTFAYIAPDFLVGPSAAVLFISL----RYHQLFPSYLLKR 233
Query: 201 AD-LIQGQMDTDYLSRLTHALTSVRSVNKTDV----VTLGSTFGSLSHIMDASMEDLARC 255
+ L++G+ +L L H + D VTL + S ++ +S+++ C
Sbjct: 234 MESLVEGRYTHKFL--LLHV-----DLEAPDAALAQVTLLAFHHCFSLLLGSSLQE---C 283
Query: 256 PGI 258
GI
Sbjct: 284 AGI 286
>gi|358253365|dbj|GAA52919.1| DNA excision repair protein ERCC-1 [Clonorchis sinensis]
Length = 342
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 87/199 (43%), Gaps = 61/199 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFA----DVV-----CDYLVG---------------- 173
NAILV+QRQ+GNPLLK+I NV W +A D V C Y +
Sbjct: 141 NAILVNQRQRGNPLLKHIHNVAWEYAEIEPDYVVGRNNCVYFLSLRYHKLNPEYIFERVR 200
Query: 174 ------------------------QNSCALYL----------SLEECGRYLETIKVYENK 199
+ C L L S EE RYLE K ENK
Sbjct: 201 QTKQNYQLSVLLCQVDITDPHYPLKELCKLCLAEKLTLMLAWSPEEAARYLEAYKALENK 260
Query: 200 PADLIQ--GQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
P D + TD+ +++T LT+VR V K D + + F +++ ++ A L CPG
Sbjct: 261 PPDDLMPATAAVTDHRAQITEFLTAVRPVTKADAASAINNFKTVADMISADAASLESCPG 320
Query: 258 IGERKVKRLYDTFHEPFKR 276
G+RK ++LY+ F PF R
Sbjct: 321 FGQRKAQKLYEVFRMPFLR 339
>gi|391327125|ref|XP_003738057.1| PREDICTED: DNA excision repair protein ERCC-1-like [Metaseiulus
occidentalis]
Length = 213
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 66/93 (70%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
S ++ G+YLE K+ ENK DLI+ +++ + L+R A+T+++SVNKTD + L FGSL
Sbjct: 118 SAQDIGQYLELYKILENKQPDLIRERIEMEPLTRAIAAITTIKSVNKTDAMELLENFGSL 177
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I +AS+E+++ PGIGERK K++Y+T EP
Sbjct: 178 KKIAEASIEEMSVVPGIGERKAKQIYETLREPL 210
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 125 ASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSL 183
++ A++S S N ILV RQK NP+L +++ V + F D++ D++VGQ++C L+LSL
Sbjct: 2 STEKATTSSGTLSLN-ILVHPRQKNNPVLNFVKKVAYEFRDDLLADFVVGQSACCLFLSL 60
>gi|145256514|ref|XP_001401422.1| mating-type switch/DNA repair protein Swi10/Rad10 [Aspergillus
niger CBS 513.88]
gi|134058325|emb|CAK38514.1| unnamed protein product [Aspergillus niger]
Length = 327
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 62/205 (30%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE---- 185
Q++ SR+ AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CAL+LSL+
Sbjct: 32 QALPSRSGPSAILVSTRQKGNPILNHIKLLPWEYADIPADYVVGNTTCALFLSLKYHRLH 91
Query: 186 -----------CGRYL-------------------------------------------- 190
G+YL
Sbjct: 92 PEYIYSRIRLIAGKYLLRIILVIVDIPNHEESLKELSKTSIVNNLTLILCWSAPEAAHYL 151
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K EN I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E
Sbjct: 152 ELFKSSENSQPIAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAVNAQPE 211
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK 275
++ PG GE+KV++ T E F+
Sbjct: 212 QISAVPGWGEKKVRQWCTTVREGFR 236
>gi|115398365|ref|XP_001214774.1| mating-type switching protein swi10 [Aspergillus terreus NIH2624]
gi|114192965|gb|EAU34665.1| mating-type switching protein swi10 [Aspergillus terreus NIH2624]
Length = 334
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 87/196 (44%), Gaps = 59/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------- 183
+AILVS RQKGNP+L +I+ V W +AD+ DY+VG +CAL+LSL
Sbjct: 56 SAILVSTRQKGNPILDFIKIVPWEYADIPADYVVGTTTCALFLSLKYHRLHPEYIYSRIR 115
Query: 184 EECGRYL--------------------------------------------ETIKVYENK 199
+ G+YL E K E
Sbjct: 116 QLAGKYLLRILLIIVDIPNHEDSLKELSKTSLVNNLTLVLCWSAPEAAHYLELFKSSEKS 175
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 176 QPTAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAVNAQPEQISAVPGWG 235
Query: 260 ERKVKRLYDTFHEPFK 275
E+KV++ + E F+
Sbjct: 236 EKKVRKWCNAVREDFR 251
>gi|148226773|ref|NP_001080498.1| excision repair cross-complementing 1 [Xenopus laevis]
gi|27696909|gb|AAH43824.1| Ercc1-prov protein [Xenopus laevis]
Length = 289
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L LS EE RYLET K YE KPAD ++ + + D++S +T LT+V+ VNKTD TL
Sbjct: 193 CTLILSWSPEEAARYLETYKCYEQKPADALKERTEKDFMSTMTECLTTVKYVNKTDSCTL 252
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKV 263
+TFG+L + +AS EDL+ CPG+G +K+
Sbjct: 253 FTTFGTLFDLANASREDLSLCPGLGPQKL 281
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 42/53 (79%)
Query: 131 SSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+++S + + ILVS RQ+GN LLKY+RNV W F+D+V DY++G+ C+L+LSL
Sbjct: 90 TTKSAGAGSCILVSTRQRGNSLLKYLRNVPWEFSDIVPDYILGETCCSLFLSL 142
>gi|241698610|ref|XP_002413128.1| excision repair cross-complementing 1 ercc1, putative [Ixodes
scapularis]
gi|215506942|gb|EEC16436.1| excision repair cross-complementing 1 ercc1, putative [Ixodes
scapularis]
Length = 111
Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 70/103 (67%)
Query: 172 VGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
+G+ + L S EE GR++ET KV+E+K ADL+ + + D +L +L+SV+S+N+ D
Sbjct: 1 MGECTLMLAWSAEEAGRHIETYKVFESKSADLLMEKSEDDVFGKLVDSLSSVKSINRPDA 60
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
VTL ++FG+L I AS E+L+ PG+G +K RLYD H+PF
Sbjct: 61 VTLLTSFGTLEKISKASKEELSFHPGMGMQKASRLYDVLHQPF 103
>gi|70994842|ref|XP_752198.1| mating-type switch/DNA repair protein Swi10/Rad10 [Aspergillus
fumigatus Af293]
gi|66849832|gb|EAL90160.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus fumigatus Af293]
gi|159124889|gb|EDP50006.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus fumigatus A1163]
Length = 341
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 117 GGEQNVGTASASASSSQ-----SIQSR---NAILVSQRQKGNPLLKYIRNVRWAFADVVC 168
GG N TA ++A Q ++ +R +AILVS RQKGNP+L +I+ + W +AD+
Sbjct: 27 GGTPNSATAQSTAPKVQQPKPQALANRTGPSAILVSTRQKGNPILNHIKLLPWEYADIPA 86
Query: 169 DYLVGQNSCALYLSLEE---------------CGRYLETI-------------------- 193
DY+VG +CAL+LSL+ G+Y+ I
Sbjct: 87 DYVVGATTCALFLSLKYHRLHPEYIYSRIKALGGKYMLRIILVMVDIENHEDSLKELSKT 146
Query: 194 ------------------------KVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKT 229
K EN I+ Q Y L +T+ RS+NK+
Sbjct: 147 SIINNYTLMLCWSAPEAAHYLELYKSSENAQPTAIRTQQAQSYKESLVEFVTTPRSINKS 206
Query: 230 DVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
D +L STFGSL + ++A E ++ PG GE+KV++ + E F+
Sbjct: 207 DAASLISTFGSLQNAINAQPEQISAVPGWGEKKVRQWTNAVREDFR 252
>gi|195122302|ref|XP_002005651.1| GI20584 [Drosophila mojavensis]
gi|193910719|gb|EDW09586.1| GI20584 [Drosophila mojavensis]
Length = 254
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 60/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFA-DVVCDYLVGQNSCALYLSLEE--------CGRY 189
+++LV +Q+GNP+LK I NV + D++ DY+VG+ +C L+LSL+ C R
Sbjct: 56 HSVLVHTKQRGNPILKSILNVPLEYRDDIIPDYVVGRTACILFLSLKYHNLNPDYICQRL 115
Query: 190 LETIKVY---------------------------------------------------EN 198
K+Y E
Sbjct: 116 KALGKLYELRVLLVQVDTPEPHNALKSLTRISLLADLTMMLAWNADEAGKIIETYKQFEK 175
Query: 199 KPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGI 258
+ DLI +++++ +L ALT+++ VNKTD VTL FG+L ++++AS E L++ G+
Sbjct: 176 RSPDLIMERVESNPHQKLVAALTNIKPVNKTDAVTLLQIFGNLENLINASEERLSQVMGL 235
Query: 259 GERKVKRLYDTFHEPF 274
G RK K+LY T HEPF
Sbjct: 236 GPRKAKKLYKTLHEPF 251
>gi|426197575|gb|EKV47502.1| hypothetical protein AGABI2DRAFT_204704 [Agaricus bisporus var.
bisporus H97]
Length = 253
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 95/198 (47%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL------------- 183
S N I+V+ Q+GNP+L+ IRNV F D+ DY VG+ + L+LSL
Sbjct: 14 SGNNIIVNPCQRGNPVLECIRNVGKEFGDIAADYQVGRTTGVLFLSLRYHRLHPEYIHSR 73
Query: 184 -EECG-----RYL-------------------------------------ETIKVY---E 197
E+ G R+L + VY E
Sbjct: 74 VEKLGHSYDRRFLLILCDITEHRDPIRELTKSCLINNITIIVAFSNDEVGHYLSVYKQFE 133
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
+KP D+I+ ++D DY + L ALT++ VNKTDV TL STFGS ++I A+ L PG
Sbjct: 134 SKPPDMIKERVDKDYHAILRGALTNIPKVNKTDVETLRSTFGSFANISRATPNQLRNLPG 193
Query: 258 IGERKVKRLYDTFHEPFK 275
G+ KVK + + F++PF+
Sbjct: 194 FGQVKVKNIENAFNKPFR 211
>gi|85544011|pdb|1Z00|A Chain A, Solution Structure Of The C-Terminal Domain Of Ercc1
Complexed With The C-Terminal Domain Of Xpf
Length = 89
Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 59/77 (76%)
Query: 201 ADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE 260
ADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 2 ADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGP 61
Query: 261 RKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 62 QKARRLFDVLHEPFLKV 78
>gi|432934227|ref|XP_004081917.1| PREDICTED: DNA excision repair protein ERCC-1-like [Oryzias
latipes]
Length = 308
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 48/207 (23%)
Query: 105 PPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFA 164
P +N LS G E + + + + S ++I+VS RQ+GNP+LK++R+V W F
Sbjct: 105 PRDLERNEELSVGDESCPKSDPSLIPGPKPVGSGSSIIVSPRQRGNPILKFVRSVPWEFG 164
Query: 165 DVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQ---GQMDTDYLSRLT---- 217
DVV DY++GQ +CAL+LSL Y N + I Q+ + R+
Sbjct: 165 DVVPDYVLGQTTCALFLSLR-----------YHNLNPNYIHERLKQLGNSFTLRVLLVQV 213
Query: 218 ------HALTSVRSVNKTDVVTLGSTFG------------------------SLSHIMDA 247
HAL + + TL + S+ I+ A
Sbjct: 214 DVKDPHHALKELARIGVMADCTLILAWSPEEAGRYLETYKSYEKXXXXXXXXSVEGIISA 273
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPF 274
S E+L CPG+G +K +RLYD H PF
Sbjct: 274 SKEELVLCPGLGPQKARRLYDVLHMPF 300
>gi|121706514|ref|XP_001271519.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus clavatus NRRL 1]
gi|119399667|gb|EAW10093.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Aspergillus clavatus NRRL 1]
Length = 336
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 59/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE------------- 185
+AILVS RQKGNP+L +I+ + W +AD+ DY++G +CAL+LSL+
Sbjct: 58 SAILVSSRQKGNPILNHIKLLPWEYADIPADYVLGATTCALFLSLKYHRLHPEYIYSRIK 117
Query: 186 --CGRYL--------------------------------------------ETIKVYENK 199
G+Y+ E K EN
Sbjct: 118 ALAGKYMLRILLIIVDIPNHEDSLKELSKTSIINNLTLMLCWSATEAAHYLELFKASENA 177
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 178 QPTAIRTQQAQSYKESLVEFVTTPRSINKSDAASLISTFGSLQNAINAQPEQISAVPGWG 237
Query: 260 ERKVKRLYDTFHEPFK 275
E+KV + + E F+
Sbjct: 238 EKKVHQWCNAVREDFR 253
>gi|336371559|gb|EGN99898.1| hypothetical protein SERLA73DRAFT_180183 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384318|gb|EGO25466.1| hypothetical protein SERLADRAFT_465670 [Serpula lacrymans var.
lacrymans S7.9]
Length = 288
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 89/201 (44%), Gaps = 59/201 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADV-------------------------------- 166
N I+++ Q+ NP+L+ IRNV F D+
Sbjct: 25 NNIIINPNQRLNPVLECIRNVGKEFGDIVADFQVGRTTAVLYLSLKYHRLHPEYIHTRIE 84
Query: 167 -------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
+CD L+ + + S +E G YL T K +E K
Sbjct: 85 RLGHAYNLRVLLIICDVSEHQEPIRELTKTCLINNITIMVAWSYDEAGLYLSTYKQFEYK 144
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
P DLI+ ++D DY + L ALTS+ VNKTDV TL ++ GS S I +S + L PG G
Sbjct: 145 PPDLIKERLDKDYNTILRTALTSINKVNKTDVETLRTSLGSFSDIATSSSDQLQNLPGFG 204
Query: 260 ERKVKRLYDTFHEPFKRVVSS 280
+ KV+R+ D F +PF+ +S
Sbjct: 205 QVKVRRIKDAFEKPFRNKATS 225
>gi|389743819|gb|EIM85003.1| hypothetical protein STEHIDRAFT_99952 [Stereum hirsutum FP-91666
SS1]
Length = 389
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 13/161 (8%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
+C ++ + + S +E G+YL T K +E++P DLI+ +++ + ++ L ++LTS+ V
Sbjct: 126 IC--IINNITMIVAWSPDEAGQYLATFKQFEHRPPDLIRERVEREPMAMLRNSLTSISKV 183
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPE 286
NKTDV TL +TFGS ++I A+ + L PG G +K+ R+ + F +PF+ +S P
Sbjct: 184 NKTDVETLRTTFGSFANISRATTDQLTDLPGFGPKKIARMKEAFDKPFRNSATSALDFPS 243
Query: 287 TPSQ---------KDVERSSVNEVTEVEKDTEDVNKRRKKE 318
T SQ +RS N + + ++ D K ++KE
Sbjct: 244 TSSQPKAQSRLPPSATDRSGAN--SSITAESHDKGKGKEKE 282
>gi|299751189|ref|XP_001830113.2| DNA excision repair protein ERCC-1 [Coprinopsis cinerea
okayama7#130]
gi|298409261|gb|EAU91778.2| DNA excision repair protein ERCC-1 [Coprinopsis cinerea
okayama7#130]
Length = 356
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 105/246 (42%), Gaps = 66/246 (26%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVV----------------------------- 167
S N I+++ Q+GNP+L+ IRNV F D+V
Sbjct: 47 SGNNIIINPLQRGNPVLECIRNVGKEFGDIVADYQVGRTTGVLWLSLKYHRLHPEYIHTR 106
Query: 168 ----------------CDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
CD L+ + + SL+E G YL T K +E
Sbjct: 107 IEKLGNSYGLRLLLILCDVTEHKEHIRELTRVCLINNITIIVAFSLDEAGHYLSTFKQFE 166
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
K D+I+ + + D+ S L ALTS+ VNKTDV TL + FGS + I A+ + L PG
Sbjct: 167 FKSPDMIKERTEKDHHSILRAALTSISKVNKTDVETLRTAFGSFAGISRATSDQLQNLPG 226
Query: 258 IGERKVKRLYDTFHEPFKRVVS-------SHPPIPETPSQKDVERSSVNEVTEVEKDTED 310
G+ KVK + + F +PF+ + S P SQ++ + +S + +E T
Sbjct: 227 FGQVKVKNMKNAFEKPFRNNATSTLTSSQSQARAPGPSSQRETQGASAARNSNMEAGTSL 286
Query: 311 VNKRRK 316
+RR+
Sbjct: 287 ATQRRR 292
>gi|295665857|ref|XP_002793479.1| mating-type switching protein swi10 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226277773|gb|EEH33339.1| mating-type switching protein swi10 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 358
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 62/205 (30%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEE---- 185
Q++ SR+ AILVS RQ+GNP+L ++++V W +AD+ DY+VG ++C L+LSL+
Sbjct: 44 QALPSRSGPAAILVSARQRGNPILNHVKHVPWEYADIPADYVVGNSTCMLFLSLKYYRLH 103
Query: 186 -----------CGRY--------------------------------------------L 190
GRY L
Sbjct: 104 PEYIYSRIKGLGGRYNLRILLTMVDIPNHEDSLKELSKTSLVNNLTLILCWSAVEAGHYL 163
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K E+ I+ Q Y L +T+ R +NK+D +L STFGSL ++A E
Sbjct: 164 ELFKSCEHAQPTAIRTQQSQSYNESLVEFITTPRIINKSDAASLISTFGSLEAAINAQPE 223
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK 275
++ PG GE+KVK+ +D F+
Sbjct: 224 QISAVPGWGEKKVKQWHDAVTGEFR 248
>gi|393220920|gb|EJD06405.1| DNA repair protein rad10, partial [Fomitiporia mediterranea MF3/22]
Length = 186
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 63/91 (69%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
EE G YL T K++E++P DLI+ ++D +Y + L ALTS+ VNKTDV TL ++FGS S
Sbjct: 96 EEAGMYLATYKLFEHRPPDLIKERVDKEYNAMLRSALTSINKVNKTDVETLRTSFGSFSK 155
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I + E+L R PG G+ KV+R+ + F +PF
Sbjct: 156 IAHTTPEELRRLPGFGQVKVRRILEAFDKPF 186
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+ NPLL+ +RNV F D++ D+ +G+ +CALYLSL
Sbjct: 1 RLNPLLECVRNVSKEFGDIIPDFQLGRTTCALYLSL 36
>gi|396463188|ref|XP_003836205.1| hypothetical protein LEMA_P055460.1 [Leptosphaeria maculans JN3]
gi|312212757|emb|CBX92840.1| hypothetical protein LEMA_P055460.1 [Leptosphaeria maculans JN3]
Length = 796
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 62/205 (30%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLV----------------- 172
Q++ SR+ +ILVS RQKGNP+L +R V W ++D+ DY+V
Sbjct: 30 QALPSRSGPSSILVSPRQKGNPILNNVRAVAWEYSDIPADYVVGATTCALFLSLKYHRLH 89
Query: 173 ------------GQNSCALYLSL------------------------------EECGRYL 190
GQ S + L++ E GRYL
Sbjct: 90 PEYIYNRIRDLKGQYSLRILLTMVDIENHEEPLRELSKTSIVNNVTVMLCWSANEAGRYL 149
Query: 191 ETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME 250
E K++EN I+ Y ++ +T+ RS+NKTD V L S FGS+ ++A+ E
Sbjct: 150 EQFKIFENAAPTSIRAHQSGSYAEKMVDFITAPRSINKTDAVGLVSNFGSIRTAINATPE 209
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK 275
++ G G++KV+R ++ EPF+
Sbjct: 210 EIGLIAGWGDKKVQRWHNAVREPFR 234
>gi|67528261|ref|XP_661935.1| hypothetical protein AN4331.2 [Aspergillus nidulans FGSC A4]
gi|40741302|gb|EAA60492.1| hypothetical protein AN4331.2 [Aspergillus nidulans FGSC A4]
gi|259482862|tpe|CBF77745.1| TPA: DNA repair endonuclease (Eurofung) [Aspergillus nidulans FGSC
A4]
Length = 328
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 86/196 (43%), Gaps = 59/196 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------- 183
+AILVS RQKGNP+L +I+ W +AD+ DY++G +CAL+LSL
Sbjct: 54 SAILVSTRQKGNPILNHIKFQPWEYADIPADYVIGATTCALFLSLKYHRLHPEYIYSRIK 113
Query: 184 EECGRYL--------------------------------------------ETIKVYENK 199
+ G+YL E K E+
Sbjct: 114 QLAGKYLLRVLLIIVDIPNHEDPLKELSKTSIINNLTLILCWSAPEAAHYLELFKSCEHS 173
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
I+ Q Y L +T+ RS+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 174 QPTAIRTQQAQSYKDSLVEFVTAPRSINKSDAASLISTFGSLQNAINAQPEQISAVPGWG 233
Query: 260 ERKVKRLYDTFHEPFK 275
E+KV+ + E F+
Sbjct: 234 EKKVRAWCNAVREEFR 249
>gi|403416893|emb|CCM03593.1| predicted protein [Fibroporia radiculosa]
Length = 1294
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 87/205 (42%), Gaps = 77/205 (37%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------EECGR----- 188
+GNP+L+ +RN+ F D+V DY VG+ + L+LSL E GR
Sbjct: 958 RGNPILESVRNIGKEFGDIVADYQVGRTTGVLFLSLRYHRLHPEYIHQRIERLGRSYNLR 1017
Query: 189 ----------------------------------------YLETIKVYENKPADLIQGQM 208
YL T K +E+KP D+I+ ++
Sbjct: 1018 ILLLMCDVSEHQEPIRELTKVCLINNMTIMVAWNAEEAGFYLSTYKQFEHKPPDMIKERV 1077
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFG------------------SLSHIMDASME 250
D DY S L ALTS+ VNKTDV TL ++ G S + I AS +
Sbjct: 1078 DKDYYSMLRTALTSISKVNKTDVETLRTSLGVGIIPFNSVLYSELSARQSFADIARASSD 1137
Query: 251 DLARCPGIGERKVKRLYDTFHEPFK 275
L + PG G+ K +R+ D F +PF+
Sbjct: 1138 QLQKMPGFGQVKARRIVDAFEKPFR 1162
>gi|409080661|gb|EKM81021.1| hypothetical protein AGABI1DRAFT_71740 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 253
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 59/198 (29%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADV------------------------------ 166
S N I+V+ Q+GNP+L+ IRNV F D+
Sbjct: 14 SGNNIIVNPCQRGNPVLECIRNVGKEFGDIAADYQVGRTTGVLFLSLRYHRLHPEYIHSR 73
Query: 167 ---------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
+CD L+ + + S +E G YL K +E
Sbjct: 74 VEKLGHSYDHRFLLILCDITEHRDPIRELTKSCLINNITIIVAFSNDEVGHYLSVYKQFE 133
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPG 257
+KP D+I+ ++D DY + L ALT++ VNKTDV TL STFGS ++I A+ L PG
Sbjct: 134 SKPPDMIKERVDKDYHAILRGALTNIPKVNKTDVETLRSTFGSFANISRATPNQLRNLPG 193
Query: 258 IGERKVKRLYDTFHEPFK 275
G+ KVK + + F++PF+
Sbjct: 194 FGQVKVKNIENAFNKPFR 211
>gi|302680174|ref|XP_003029769.1| hypothetical protein SCHCODRAFT_42481 [Schizophyllum commune H4-8]
gi|300103459|gb|EFI94866.1| hypothetical protein SCHCODRAFT_42481, partial [Schizophyllum
commune H4-8]
Length = 185
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 9/128 (7%)
Query: 155 YIRNVRWAFADVV-------CDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQ 207
Y + DVV C L+ + + S++E G YL T K +EN+P D+I+ +
Sbjct: 57 YTLRILLILCDVVSALLSQTC--LINNITVIVAFSVDEAGHYLATFKQFENRPPDMIKER 114
Query: 208 MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
+D DY S L ALTS+ VNKTDV TL ++FGS + I AS + L+ PG G+ KVK +
Sbjct: 115 VDKDYNSVLRSALTSISKVNKTDVETLRTSFGSFADIARASSDQLSNLPGFGQVKVKNIK 174
Query: 268 DTFHEPFK 275
+ F +P +
Sbjct: 175 NAFEKPIR 182
>gi|358053841|dbj|GAA99973.1| hypothetical protein E5Q_06676 [Mixia osmundae IAM 14324]
Length = 822
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
+E GR L K E +P D ++ + +TDYL+++ LT R+VNKTD L FGSL
Sbjct: 712 QEAGRILSKYKKQERRPPDALKARPETDYLAQMQTVLTKPRAVNKTDTENLIRNFGSLKD 771
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
IM AS +L +CPG+GE KV+RL D F +PF
Sbjct: 772 IMMASSSELVQCPGLGELKVRRLRDAFSQPF 802
>gi|328865770|gb|EGG14156.1| DNA excision repair protein 1 [Dictyostelium fasciculatum]
Length = 413
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 115 SQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQ 174
+Q GE+N + SS ++ ++ + PLL+ + + W +V
Sbjct: 238 AQLGERN-----KAISSVHELRVLFVLVDVEEASAVPLLEELSH--WC--------IVYN 282
Query: 175 NSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
+ + SL E RY++T K+++ K D+I+ + S + LT+ +S+NKTD L
Sbjct: 283 LTLVVGWSLIEVARYIQTFKLFDQKSPDIIKTKHSDLDKSVVEDVLTTFKSINKTDSTNL 342
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETP 288
+TFGS+ + D+S E ++ CPGIG +KV L+ H+PFK V S P+ + P
Sbjct: 343 INTFGSIKELFDSSKEAVSLCPGIGPKKVNSLWSILHQPFKAVKPSPKPVNQNP 396
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
Query: 132 SQSIQSRNAILVSQRQKGNPLLKYIRNVRWAF-ADVVCDYLVGQNSCALYLSLE 184
SQS S ++++VS+R +GN +++++ V+W + +++ D+L+ +SC L+LSL+
Sbjct: 179 SQSF-SFSSLIVSERLRGNGIIQFLNLVKWEYNSNIKPDFLMAHDSCGLFLSLK 231
>gi|170059466|ref|XP_001865376.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
gi|167878242|gb|EDS41625.1| DNA excision repair protein ERCC-1 [Culex quinquefasciatus]
Length = 243
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
+C L+ + L + EE G+ +ET K+ E+KP D I + + ++ ALTS++ V
Sbjct: 135 IC--LLADLTLMLAWTAEEAGKIVETYKLMEHKPPDAIMERPEKFPYQKMVSALTSIKPV 192
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
NKTD +TL +G+L++++++S E LA+CPG G RK K+L+ TF+E F +
Sbjct: 193 NKTDAMTLMQNYGTLANMINSSEEKLAQCPGFGARKAKKLHKTFNESFLK 242
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 11/73 (15%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKV 195
Q N LVS +Q GNPLLK I++V W + D+V DY+VG +C L++SL
Sbjct: 43 QQGNYFLVSPKQGGNPLLKSIQSVAWEYDDIVPDYVVGATACILFISLR----------- 91
Query: 196 YENKPADLIQGQM 208
Y N D I G++
Sbjct: 92 YHNLNPDYIHGRL 104
>gi|355686444|gb|AER98060.1| excision repair cross-complementing rodent repair deficiency,
complementation group 1 [Mustela putorius furo]
Length = 268
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 195 CTLVLAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 254
Query: 235 GSTFGSLSHIMDAS 248
+TFGSL +M AS
Sbjct: 255 LTTFGSLEQLMAAS 268
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
++I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 100 SSIIVSPRQRGNPVLKFVRNVPWEFGDVLPDYVLGQSTCALFLSL 144
>gi|443725998|gb|ELU13340.1| hypothetical protein CAPTEDRAFT_166856 [Capitella teleta]
Length = 261
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L ++ EE GRYLET K +E KP DLI + + ++LS+ T LTSVR +NKTD TL
Sbjct: 121 CTLMVAFSPEEAGRYLETYKSFETKPPDLIMEKTEANFLSKFTDCLTSVRKINKTDAATL 180
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVK 264
STF + I +A++EDL+ PG G +KV+
Sbjct: 181 LSTFKTFDAISEANVEDLSLLPGFGPQKVR 210
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 138 RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+N I+VS RQ+GNP+LK+IRNV W F + V DY +G +CAL+LSL
Sbjct: 25 KNCIIVSSRQRGNPILKHIRNVAWEFGETVADYELGLTTCALFLSL 70
>gi|339243053|ref|XP_003377452.1| DNA excision repair protein ERCC-1 [Trichinella spiralis]
gi|316973744|gb|EFV57303.1| DNA excision repair protein ERCC-1 [Trichinella spiralis]
Length = 340
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 20/147 (13%)
Query: 143 VSQRQK--GNPLLKYIRNVRWAFADV------------VCDYLVGQNSCALYLSLEECGR 188
+ QR K G+ KY V + DV VC + + + L S EE G
Sbjct: 174 IHQRMKEVGH---KYAVQVLFVLVDVMEPENTLRELNSVCYH--AEWTLILTWSPEEVGE 228
Query: 189 YLETIKVYENKPAD-LIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247
Y+E+ K+YENKPA+ L+ TD SRL LT ++ + KTD +L FGSL I +A
Sbjct: 229 YIESYKIYENKPAEFLMTKSAATDSRSRLAELLTCIKPITKTDADSLIDMFGSLRKIAEA 288
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPF 274
+ E+L+ CPG+G RK K+L++ F + F
Sbjct: 289 TEEELSLCPGMGRRKAKKLHEGFAKLF 315
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+++V+ RQKGN +L+Y+RNV W F + D+++GQ CAL+LSL
Sbjct: 121 SVIVNHRQKGNSVLRYVRNVVWEFGETKADFVLGQCCCALFLSL 164
>gi|189241644|ref|XP_970360.2| PREDICTED: similar to excision repair cross-complementing 1 ercc1
[Tribolium castaneum]
Length = 245
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
VC ++ + L S EE G+ +ET K+YENKPAD I + ++ RL LTS++ +
Sbjct: 137 VC--ILADLTLILAWSAEEAGKIIETYKIYENKPADNIMEKGESSPYIRLLQVLTSIKPI 194
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
NKTD + L + F +L ++ A+ L+ CPG+G K ++LY T HE F R
Sbjct: 195 NKTDAMNLIARFKTLEGVIKATEFQLSECPGLGPVKARKLYSTLHEKFCR 244
>gi|403299027|ref|XP_003940294.1| PREDICTED: DNA excision repair protein ERCC-1 [Saimiri boliviensis
boliviensis]
Length = 321
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 57/103 (55%), Gaps = 26/103 (25%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR
Sbjct: 241 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSR------------------- 281
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
SL ++ AS EDLA CPG+G +K +RL+D HEPF +V
Sbjct: 282 -----SLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKV 319
>gi|409044902|gb|EKM54383.1| hypothetical protein PHACADRAFT_174878 [Phanerochaete carnosa
HHB-10118-sp]
Length = 382
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 92/223 (41%), Gaps = 77/223 (34%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADV-------------------------------- 166
N +LV+ Q+GNP+L+ I+NV F DV
Sbjct: 35 NNVLVNPCQRGNPVLECIKNVGKEFGDVVCDYQVGRTTGVLYLSLRYHRLHPEYIHQRIE 94
Query: 167 -------------VCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENK 199
+CD L+ + + +LEE G YL T K +E+K
Sbjct: 95 RFGTAFNLRILLILCDVSEHQDSIRELTKTCLINNITVVVAWTLEEAGFYLSTFKQFEHK 154
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG-------SLSH--------- 243
P LI+ ++D DY S + ALTS+ VNKTD+ L ++ G SL H
Sbjct: 155 PPTLIKERVDKDYNSMMRTALTSINKVNKTDIEILRTSIGVCSTYHRSLGHPSLRPPKSF 214
Query: 244 --IMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPI 284
I AS E L + PG G+ KVKR+ D F PF+ SS P
Sbjct: 215 ADIASASSERLLQLPGFGQVKVKRIKDAFERPFRGSTSSVLPF 257
>gi|452821311|gb|EME28343.1| DNA excision repair protein ERCC-1 [Galdieria sulphuraria]
Length = 258
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 65/93 (69%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
+E RYLET ENKP D+++ + + DY+S++ ALTS+ S+NKTD + L + F ++
Sbjct: 165 KEAARYLETYFALENKPTDVLRERTEQDYISKVESALTSIPSINKTDAMQLIANFKTVHA 224
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+++A +++L++CPGIG KV+RL + PF++
Sbjct: 225 LVNADVKELSKCPGIGPTKVQRLKEALQMPFRK 257
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 80 QSFSQAFSFIKSSEFYNPPPPP-PANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSR 138
F+QAF F+K SEF+ + +S + + S + ++ A A A+
Sbjct: 8 HEFTQAFQFLKDSEFFETHEEQGSESASLSSLSYSFSSKAKTDLIIAQAKAN-------- 59
Query: 139 NAILVSQ-RQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+ I+V+Q QK NPL +I+ V W + ++V DYL+G+ +CAL+L +
Sbjct: 60 HFIVVNQATQKNNPLNGFIKQVLWNYGNIVPDYLLGRYTCALFLRI 105
>gi|255949672|ref|XP_002565603.1| Pc22g16900 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592620|emb|CAP98978.1| Pc22g16900 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 328
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 66/249 (26%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------- 183
+AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CA++LSL
Sbjct: 43 SAILVSTRQKGNPILTHIKLLPWEYADIPADYVVGTTTCAMFLSLKYHRLHPEYIYSRVK 102
Query: 184 EECGRY-LETIKVYENKP--ADLIQGQMDTDYLSRLTHAL-------------------- 220
+ G+Y L + V + P D ++ T ++ LT L
Sbjct: 103 QLAGKYNLRLVLVMVDIPNHEDSLRELSKTSIINNLTLILCWSAPEAAHYLELYKSSENA 162
Query: 221 --TSVR-------------------SVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
T++R S+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 163 QPTAIRAQQAQSYKESLVEFVTVPRSINKSDAASLISTFGSLQNAINAQPEQISAVPGWG 222
Query: 260 ERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKET 319
E+KV + E F+ + P T Q+ + VN VE D D N + E
Sbjct: 223 EKKVLQWCHAVREDFRVESTKRAAAPAT--QRRAQLPGVN----VE-DIHDQNMGEEDEE 275
Query: 320 ESTVKSALS 328
E+ ++ L+
Sbjct: 276 EAILREVLA 284
>gi|242220518|ref|XP_002476024.1| predicted protein [Postia placenta Mad-698-R]
gi|220724747|gb|EED78769.1| predicted protein [Postia placenta Mad-698-R]
Length = 186
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 58/91 (63%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
EE G YL T K +E+KP DLI+ ++D Y + L ALTS+ VNKTDV TL ++FGS +
Sbjct: 96 EEAGFYLSTYKQFEHKPPDLIKERVDKSYHAMLRTALTSISKVNKTDVETLRTSFGSFAA 155
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I A+ E L PG G+ K KR+ D +PF
Sbjct: 156 ISRATTEQLQNLPGFGQVKAKRVVDALEKPF 186
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 148 KGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+GNP+L++IRNV ++V DY VG+ + L+LSL
Sbjct: 1 RGNPVLEHIRNVGKEVREIVADYQVGRTTGVLFLSL 36
>gi|19112907|ref|NP_596115.1| DNA repair endonuclease Swi10 [Schizosaccharomyces pombe 972h-]
gi|549012|sp|Q06182.1|SWI10_SCHPO RecName: Full=Mating-type switching protein swi10
gi|5111|emb|CAA43928.1| SWI10 [Schizosaccharomyces pombe]
gi|3560148|emb|CAA20735.1| DNA repair endonuclease Swi10 [Schizosaccharomyces pombe]
Length = 252
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 152 LLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTD 211
+L + N + + ++V +V Q + L S EE RYLET K YEN LI + TD
Sbjct: 113 ILVDVENHQASIQELVKTSIVNQYTLILAWSSEEAARYLETYKAYENMSPALIMEKPSTD 172
Query: 212 YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
YLS++ LTS+R +NK+D ++L S FGSL + AS ++L + G G KV R +
Sbjct: 173 YLSQVQSFLTSIRGINKSDSLSLLSKFGSLERALVASRDELEQLEGWGPTKVNRFLEAVQ 232
Query: 272 EPF 274
+PF
Sbjct: 233 QPF 235
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILV+ RQKGNPLL ++RNV W + D+V D+++G C+L+LSL+
Sbjct: 41 HSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLK 86
>gi|303274138|ref|XP_003056392.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462476|gb|EEH59768.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 223
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
SLEE RYLET+K YE+ + I+G D++SR+ A+TS+RS+NK D +TL +FG+L
Sbjct: 125 SLEESARYLETLKEYESYSTNDIEGTEKIDFVSRVQGAITSLRSLNKLDAITLCDSFGTL 184
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ ++ AS L PG G K++ + DTFH P +
Sbjct: 185 ASLICASHTRLVT-PGFGPTKIRFILDTFHRPLR 217
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLS 182
Q R+ +LVS Q GNP+L+ I NVRW+F+ VV D+ + +SC ++LS
Sbjct: 20 QKRDVLLVSSTQSGNPVLRNIYNVRWSFSSVVPDFSLSASSCVIFLS 66
>gi|449304950|gb|EMD00957.1| hypothetical protein BAUCODRAFT_44173, partial [Baudoinia
compniacensis UAMH 10762]
Length = 342
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E GRYLE K YEN I+ T Y R+ +T+ RS+NKTD
Sbjct: 110 LINNVTLVLCWSAVEGGRYLELFKTYENAAPTSIKQHQSTSYSDRMVEFITTPRSINKTD 169
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V+L S FGS+ ++A ED+A G GE+KV+R EPF+
Sbjct: 170 AVSLVSQFGSIRTAVNARHEDIATIAGWGEKKVQRWCTAVREPFR 214
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+I+VS RQKGNP+L I+++ W + D+ DY++G +CAL+LSL+
Sbjct: 20 SIIVSPRQKGNPVLAAIKSMPWEYGDIPADYVLGVTTCALFLSLK 64
>gi|367040147|ref|XP_003650454.1| hypothetical protein THITE_2109933 [Thielavia terrestris NRRL 8126]
gi|346997715|gb|AEO64118.1| hypothetical protein THITE_2109933 [Thielavia terrestris NRRL 8126]
Length = 367
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 101/235 (42%), Gaps = 71/235 (30%)
Query: 101 PPANPPTTSQNPTLSQGGEQNV-GTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
PP+N +S P + Q Q + G S S+ ILVS RQKGNP+L +++V
Sbjct: 52 PPSNASASSGGPKVVQPTPQALPGRGSGSS-----------ILVSPRQKGNPVLSCLKSV 100
Query: 160 RWAFADVVCDYLVGQNSCALYLSLEEC---------------GRY-LETIKVYENKP--A 201
W ++D+ DY +GQ +CAL+LSL+ GRY L + + P
Sbjct: 101 AWEYSDIPADYGLGQTTCALFLSLKYHRLHPEYIYTRIRNLQGRYNLRVLLTLVDIPNHE 160
Query: 202 DLIQGQMDTDYLSRLT---------------------HA--------------------L 220
D ++ T ++R+T HA +
Sbjct: 161 DALRELSKTSLVNRVTVVLAWSAAEAARYLELYKAYEHAGFAAIRGQQAAGYAERLVEFV 220
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
T R++NK D V L S FGSL H ++A E +A G GE+KV+ EPF+
Sbjct: 221 TVPRNINKADAVALVSAFGSLRHAVNAEPEQIAVVGGWGEKKVRAWCKAVEEPFR 275
>gi|425781537|gb|EKV19497.1| Mating-type switch/DNA repair protein Swi10/Rad10, putative
[Penicillium digitatum PHI26]
gi|425782768|gb|EKV20658.1| Mating-type switch/DNA repair protein Swi10/Rad10, putative
[Penicillium digitatum Pd1]
Length = 326
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 59/257 (22%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL--------------- 183
+AILVS RQKGNP+L +I+ + W +AD+ DY+VG +CA++LSL
Sbjct: 43 SAILVSTRQKGNPILTHIKLLPWEYADIPADYVVGTTTCAMFLSLKYHRLHPEYIYSRVK 102
Query: 184 EECGRY---LETIKVYENKPADLIQGQMDTDYLSRLTHAL-------------------- 220
+ G+Y L + V D ++ T ++ LT L
Sbjct: 103 QLAGKYNLRLVLVMVDIQDHEDSLKELSKTSIINNLTLILCWSAPEAAHYLELFKSSENA 162
Query: 221 --TSVR-------------------SVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
T++R S+NK+D +L STFGSL + ++A E ++ PG G
Sbjct: 163 QPTAIRAQQAQTYKESLVEFVTVPRSINKSDAASLISTFGSLQNAINAQPELISAVPGWG 222
Query: 260 ERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKET 319
E+KV++ T E F+ + +P T + + V + D ED + +E
Sbjct: 223 EKKVQQWCHTVREDFRVESTKRVSVPVTQRRAQLSAVKVYDRNNQNTDEEDEEEAILREV 282
Query: 320 ESTVKSALSAAFAKYAD 336
+ K +A A+ +
Sbjct: 283 LAESKKTAAAEAARLTE 299
>gi|154304059|ref|XP_001552435.1| hypothetical protein BC1G_09665 [Botryotinia fuckeliana B05.10]
gi|347441513|emb|CCD34434.1| similar to mating-type switching protein swi10 [Botryotinia
fuckeliana]
Length = 387
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 65/215 (30%)
Query: 120 QNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCAL 179
Q V A AS SS SIQ VS RQKGNP+L +++ W ++D++ DY++G +CAL
Sbjct: 63 QPVPQAIASRSSGSSIQ------VSLRQKGNPILTNLKSFPWEYSDILADYVLGTTTCAL 116
Query: 180 YLSLE-----------------------------ECGRYLETIK---------------- 194
+LSL+ + G + E++K
Sbjct: 117 FLSLKYHRLHPEYIYNRIKGLQGKYNLRVLLTMVDIGNHEESLKELSKTSLVNNVTVILC 176
Query: 195 -----------VY---ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGS 240
+Y E+ A I+G Y ++ +T RS+NK D V L FGS
Sbjct: 177 WSALEAARYLELYKSYEHANASAIKGVESKSYGDKMVDFITVPRSINKRDAVALVDAFGS 236
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ ++A E++A G GE+KV++ EPF+
Sbjct: 237 IRGAINARPEEIAVVDGWGEKKVRKWCGVVDEPFR 271
>gi|407926360|gb|EKG19327.1| DNA repair protein rad10 [Macrophomina phaseolina MS6]
Length = 369
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S +E GRYLE K YE+ I+ ++Y ++ +T+ RS+NKTD
Sbjct: 117 LINNVTLILCWSAQEAGRYLELFKTYEHAAPTSIRAPQASNYSEKMVEFITTPRSINKTD 176
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V+L S FGSL ++A E++A G GE+KVK+ T EPF+
Sbjct: 177 AVSLVSNFGSLRTAINAQPEEVALVAGWGEKKVKKWCSTVREPFR 221
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+ILVS RQKGNP+L +RNV W ++D+ DY++G +CAL+LSL+
Sbjct: 27 SILVSPRQKGNPILNSVRNVPWEYSDIPADYVLGATTCALFLSLK 71
>gi|340939111|gb|EGS19733.1| mating-type switching protein swi10-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 1329
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 102/233 (43%), Gaps = 42/233 (18%)
Query: 137 SRNAILVSQRQKGNPLL-----KY-----------IRNVRW------------------A 162
S + ILVS RQKGNP+L KY IRN++ A
Sbjct: 595 SGSTILVSPRQKGNPVLTCLNLKYHRLHPEYIYTRIRNLQGKYNLRILLVLVDIPNHEDA 654
Query: 163 FADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS 222
++ +V + L S E RYLE K YE+ I+GQ T Y RL +T
Sbjct: 655 LRELTKTSVVNNVTIILTWSAAEAARYLELYKSYEHAGFSAIKGQQATGYAERLVEFVTV 714
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHP 282
R+VNK D V L +TFG+L + ++A E ++ G GE+KVK +PF+
Sbjct: 715 PRTVNKADAVALVATFGTLRNAINADPEQISMVSGWGEKKVKAWCRAVEQPFR---GGRK 771
Query: 283 PIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKET---ESTVKSALSAAFA 332
P + KD + N TE+++ + + R E S + + L+ +A
Sbjct: 772 PTKRKAAVKDSSKDKRN--TEIQQQSAEAEPFRSSENCMPSSVLLALLATVYA 822
>gi|392593609|gb|EIW82934.1| hypothetical protein CONPUDRAFT_143024 [Coniophora puteana
RWD-64-598 SS2]
Length = 379
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 85/208 (40%), Gaps = 69/208 (33%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVV----------------------------- 167
S N I+++ Q+ NPLL+ IRNV F ++V
Sbjct: 18 SGNNIIINPNQRLNPLLECIRNVGKQFGEIVPDFQVGRTTCVLYLSLKYHRLHPEYIHAR 77
Query: 168 ----------------CDY--------------LVGQNSCALYLSLEECGRYLETIKVYE 197
CD L+ + + SL+E G YL T K +E
Sbjct: 78 IEKLGHAFNLRILLIMCDVSEHQDPIRELTKTCLINNITIIVAWSLDEAGHYLSTFKQFE 137
Query: 198 NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG----------SLSHIMDA 247
+KP DLI+ + + DY S L ALTS+ VNKTDV TL ++ G S + I
Sbjct: 138 HKPPDLIKERAEKDYDSVLRAALTSINKVNKTDVETLRTSVGLTTLCPNGTQSFADIART 197
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ L PG G+ KV+R+ D PFK
Sbjct: 198 PSDQLLALPGFGQVKVRRIKDALERPFK 225
>gi|169607321|ref|XP_001797080.1| hypothetical protein SNOG_06717 [Phaeosphaeria nodorum SN15]
gi|160701389|gb|EAT85368.2| hypothetical protein SNOG_06717 [Phaeosphaeria nodorum SN15]
Length = 436
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E GRYLE K +EN I+ Q + Y ++ +T RS+NKTD
Sbjct: 133 LVNNVTVMLCWSAQEAGRYLELFKTFENAAPTSIRAQQSSTYSEKMVEFITVPRSINKTD 192
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK-----RVVSSHPPIP 285
V L S FGS+ ++A E++ G GE+KV+R + EPF+ R V +
Sbjct: 193 AVGLVSNFGSIRTAINAGPEEIGLIAGWGEKKVQRWSNAVREPFRVKKAARRVLNREDTR 252
Query: 286 ETPSQKDVERSSVNEVTEVEKDTEDVNKRR 315
T S +D+ R+ +E+D+ V + R
Sbjct: 253 ATMS-RDLSRADAEHHMPIEEDSTSVARER 281
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 10/89 (11%)
Query: 96 NPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKY 155
NP PAN T+ P + Q Q + + S +S ILVS RQKGNPLL
Sbjct: 9 NPAQNGPANAARTANAPKVQQPKPQALPSRSGPSS----------ILVSPRQKGNPLLNN 58
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+R+V W ++D+ DY+VG +CAL+LSL+
Sbjct: 59 VRSVAWEYSDIPADYVVGATTCALFLSLK 87
>gi|281202660|gb|EFA76862.1| DNA excision repair protein 1 [Polysphondylium pallidum PN500]
Length = 536
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHI 244
E RY+E K+ + D+I+ + + + ALT+++ +NKTD TL STFG++ I
Sbjct: 369 EAARYIEGFKILDTVSPDIIKTKQSNLDKTLVQDALTTIKGINKTDATTLISTFGTVKRI 428
Query: 245 MDASMEDLARCPGIGERKVKRLYDTFHEPF 274
D S E CPG+G++KV LY+ H+PF
Sbjct: 429 FDGSKESFGLCPGMGQKKVNSLYNVLHQPF 458
>gi|239606562|gb|EEQ83549.1| mating-type switching protein swi10 [Ajellomyces dermatitidis ER-3]
Length = 359
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 108/264 (40%), Gaps = 73/264 (27%)
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
P A P T+ Q P + Q Q + + S + AILVS RQ+GNP+L ++R++
Sbjct: 25 PRSAAPTTSDQRPKVQQPKPQALPSRSGPS----------AILVSARQRGNPILNHVRHI 74
Query: 160 RWAF----ADVVC------------------DY-------LVGQNSCALYLSL------- 183
W + AD V +Y L G+ + + L+L
Sbjct: 75 PWEYADIPADYVVGSATCVLFLSLKYYRLHPEYIYARIKGLAGKYNLRILLTLIDIPNHE 134
Query: 184 -----------------------EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
E G YLE K E+ I+ Q Y L +
Sbjct: 135 DSLRELSKTSIVNNLTLILCWSAAEAGHYLELFKSCEHAQPTAIRTQQSQSYNESLVEFI 194
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF--KRVV 278
T+ RS+NK+D +L STFGSL ++A E ++ PG GERKV++ +D + F +R
Sbjct: 195 TAPRSINKSDAASLISTFGSLQAAVNAQPEQISAVPGWGERKVQQWHDAVTDDFQIRRTA 254
Query: 279 S--SHPPIPETPSQKDVERSSVNE 300
+ PPI T + +E E
Sbjct: 255 KRRAKPPIDNTREARTLEEDFTEE 278
>gi|261193240|ref|XP_002623026.1| mating-type switching protein swi10 [Ajellomyces dermatitidis
SLH14081]
gi|239589161|gb|EEQ71804.1| mating-type switching protein swi10 [Ajellomyces dermatitidis
SLH14081]
gi|327356848|gb|EGE85705.1| mating-type switching protein swi10 [Ajellomyces dermatitidis ATCC
18188]
Length = 359
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 108/264 (40%), Gaps = 73/264 (27%)
Query: 100 PPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNV 159
P A P T+ Q P + Q Q + + S + AILVS RQ+GNP+L ++R++
Sbjct: 25 PRSAAPTTSDQRPKVQQPKPQALPSRSGPS----------AILVSARQRGNPILNHVRHI 74
Query: 160 RWAF----ADVVC------------------DY-------LVGQNSCALYLSL------- 183
W + AD V +Y L G+ + + L+L
Sbjct: 75 PWEYADIPADYVVGSATCVLFLSLKYYRLHPEYIYARIKGLAGKYNLRILLTLIDIPNHE 134
Query: 184 -----------------------EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHAL 220
E G YLE K E+ I+ Q Y L +
Sbjct: 135 DSLRELSKTSIVNNLTLILCWSAAEAGHYLELFKSCEHAQPTAIRTQQSQSYNESLVEFI 194
Query: 221 TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF--KRVV 278
T+ RS+NK+D +L STFGSL ++A E ++ PG GERKV++ +D + F +R
Sbjct: 195 TAPRSINKSDAASLISTFGSLQAAVNAQPEQISAVPGWGERKVQQWHDAVTDDFQIRRTA 254
Query: 279 S--SHPPIPETPSQKDVERSSVNE 300
+ PPI T + +E E
Sbjct: 255 KRRAKPPIDNTREARTLEEDFTEE 278
>gi|398410916|ref|XP_003856805.1| hypothetical protein MYCGRDRAFT_24762, partial [Zymoseptoria
tritici IPO323]
gi|339476690|gb|EGP91781.1| hypothetical protein MYCGRDRAFT_24762 [Zymoseptoria tritici IPO323]
Length = 293
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTF 238
L S E GRYLE K YEN I+ T Y RL +T+ RS+NKTD V+L + F
Sbjct: 126 LCWSAAEGGRYLELFKTYENAAPTSIKQHQSTTYSDRLIDFVTTPRSINKTDAVSLVAQF 185
Query: 239 GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
GS+ ++A ED++ G GE+KV++ D+ EPF+
Sbjct: 186 GSIRAAVNARHEDVSVIAGFGEKKVQKWCDSVREPFR 222
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 36/45 (80%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
AI+VS RQKGNP+L+ I+++ W + D+ DY++G +CAL+LSL+
Sbjct: 28 AIIVSPRQKGNPVLERIKSMPWEYGDIAADYVLGVTTCALFLSLK 72
>gi|347971102|ref|XP_318485.4| AGAP004029-PA [Anopheles gambiae str. PEST]
gi|333469632|gb|EAA13582.4| AGAP004029-PA [Anopheles gambiae str. PEST]
Length = 270
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 67/110 (60%), Gaps = 2/110 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
+C L+ + L + +E GR +E K++EN+P D I + + +L ALTS++ V
Sbjct: 144 IC--LLADLTLMLAWNADEAGRIVEKYKLFENRPPDWIMERAEKYPHEKLVRALTSIKPV 201
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
N+TD + L F +L ++++S E L+ C G+G RKVK+L+ TF E F++
Sbjct: 202 NQTDAMILLQNFDTLGKLINSSEERLSMCSGLGPRKVKKLHKTFSESFRK 251
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 100 PPPANPPTTSQN--PTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIR 157
PPPA S+ P+ + +A + + + ILV+ +Q+GNPLLK I+
Sbjct: 14 PPPAKQMAVSETSAPSNTTTATTAETPTTAPVVVAAKVNKSHCILVNPKQRGNPLLKAIQ 73
Query: 158 NVRWAFADVVCDYLVGQNSCALYLSL 183
+ W + DVV DY+VG ++C L+LSL
Sbjct: 74 TIPWEYDDVVPDYVVGASACILFLSL 99
>gi|332373636|gb|AEE61959.1| unknown [Dendroctonus ponderosae]
Length = 241
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 68/119 (57%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+++ +A ++ ++ + L S EE G+ +ET K++ENKP D + G+ + +
Sbjct: 121 VKDPHYALKNLTRICILANMTLILAWSPEEAGKIVETYKIFENKPPDNVMGKTEASPYLK 180
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ LT+++ +NKTD + L + F +L I+ AS L+ CPG+G RK KRL+ E F
Sbjct: 181 VIQTLTAIKPINKTDAMNLLTRFKTLEGIIRASESQLSSCPGLGPRKAKRLFKVLRENF 239
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
S ++LV+ +Q+GNP+LK I V W + D+V DY +G CAL+LSL
Sbjct: 43 STKSLLVNPKQRGNPILKSILRVAWEYDDIVPDYQMGSQICALFLSL 89
>gi|312382589|gb|EFR27996.1| hypothetical protein AND_04684 [Anopheles darlingi]
Length = 245
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSV 226
+C L+ + L + +E GR +E K++EN+P D I + + +L ALTS++ V
Sbjct: 138 IC--LLADLTLMLAWNADEAGRIVEKYKLFENRPPDWIMERAEKYPHEKLVRALTSIKPV 195
Query: 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
N+TD + L +G+L+++++++ E L+ G+G RKVK+LY TF+E F+
Sbjct: 196 NQTDAMILLQNYGTLANLINSTEEKLSMVSGLGPRKVKKLYKTFNENFR 244
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N ILV+ +Q+GNPLLK I+N+ W + +VV DY+VG ++C L+LSL
Sbjct: 49 NCILVNPKQRGNPLLKAIQNIPWEYDEVVPDYVVGASACILFLSL 93
>gi|321459229|gb|EFX70285.1| hypothetical protein DAPPUDRAFT_61546 [Daphnia pulex]
Length = 146
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 63/94 (67%), Gaps = 3/94 (3%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYL---SRLTHALTSVRSVNKTDVVTLGSTFGS 240
+E G+ +ET KV+E+KP DLI G+ + + + + +AL+S++SVN+T+ +TL S F +
Sbjct: 51 QEAGKIIETYKVFEHKPPDLIMGKQENNSTLSGAIILYALSSIKSVNRTNAMTLLSNFQT 110
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L I +A+ EDL+ PG G +K KRL+ H+ F
Sbjct: 111 LQKIYEATEEDLSLNPGFGPQKAKRLFRVLHDKF 144
>gi|402085306|gb|EJT80204.1| mating-type switching protein swi10 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 398
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 55/105 (52%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E RYLE K YE+ I+ T Y RL +T R++NK D
Sbjct: 188 LVNNVTLVLCWSAQEAARYLELYKSYEHANFSAIRAAQATGYAERLVEFVTVPRAINKAD 247
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L STFGSL + ++A E +A G GERKVK +PF+
Sbjct: 248 AVALVSTFGSLRNAVNADAEQVASVGGWGERKVKSWCKVVEQPFR 292
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
S +AILVS RQK NP+L +I+++ W ++D+ DY +G +CAL+LSL+
Sbjct: 95 SGSAILVSPRQKNNPVLTWIKSIPWEYSDIPADYGLGLTTCALFLSLK 142
>gi|451999235|gb|EMD91698.1| hypothetical protein COCHEDRAFT_1175927 [Cochliobolus
heterostrophus C5]
Length = 381
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E GRYLE K +EN I+ Q Y + +T RS+NKTD
Sbjct: 148 LVNNVTVMLCWSAQEAGRYLELFKTFENAAPTSIRAQQAGSYAENMVDFITVPRSINKTD 207
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGS+ ++A+ E++A G G++KV+R + EPF+
Sbjct: 208 AVGLVSNFGSIRTAINAAPEEIALIAGWGDKKVQRWCNAVREPFR 252
>gi|367029673|ref|XP_003664120.1| hypothetical protein MYCTH_2306581 [Myceliophthora thermophila ATCC
42464]
gi|347011390|gb|AEO58875.1| hypothetical protein MYCTH_2306581 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+GQ T Y RL +T R+VNK D
Sbjct: 169 LVNDVTVILAWSAAEAARYLELYKSYEHAGFAAIRGQQATSYAERLVEFVTVPRNVNKAD 228
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGSL H ++A E + G GE+KV+ EPF+
Sbjct: 229 AVALVSAFGSLRHAVNADPEQIGVVGGWGEKKVRAWCRAVREPFR 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
S + ILVS RQKGNP+L +++V W ++D+ DY +G +CAL+LSL+
Sbjct: 76 SGSTILVSPRQKGNPVLACLKSVPWEYSDIPADYGLGLTTCALFLSLK 123
>gi|340521339|gb|EGR51574.1| hypothetical protein TRIREDRAFT_57198 [Trichoderma reesei QM6a]
Length = 329
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E RYLE K YEN I+GQ ++Y +L +T RS+NK+D
Sbjct: 142 VVNNVTVMLCWSAAEAARYLELYKSYENANFAAIRGQQSSNYADKLVEFVTVPRSLNKSD 201
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L + FGSL + ++A E L+ G G KVKR D EPF+
Sbjct: 202 AVALVANFGSLKNAINAEPEQLSMISGWGGIKVKRWMDAVDEPFR 246
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRY 189
Q IQ +N ILVS RQ+GNP+L IR++ W ++D+ DY++G +CAL+LSL+ +
Sbjct: 42 QVIQQKNLGSTILVSPRQRGNPVLTSIRSIPWEYSDIPADYVLGLTTCALFLSLKYHRLH 101
Query: 190 LETIKVYENKPADLIQGQMDTDYLSRLT---HALTSVRSVNKTDVV 232
E I +QG+ + L L + S+R ++KT VV
Sbjct: 102 PEYIYTRIRN----LQGKYNLRILLTLVDIPNHEDSLRELSKTSVV 143
>gi|358391140|gb|EHK40544.1| hypothetical protein TRIATDRAFT_320874 [Trichoderma atroviride IMI
206040]
Length = 398
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E RYLE K YEN I+GQ T+Y +L +T RS+NK+D
Sbjct: 164 VVNNVTVILCWSAAEAARYLELYKSYENANFSAIRGQQSTNYADKLVEFVTVPRSLNKSD 223
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L + FGSL + ++A E L+ G G KVKR EPF+
Sbjct: 224 AVALVANFGSLKNAINAEPEQLSMMGGWGGVKVKRWTAAVEEPFR 268
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 10/106 (9%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRY 189
Q IQ +N ILVS RQ+GNP+L IR++ W ++D+ DY+VG +C L+LSL+ +
Sbjct: 64 QIIQQKNLGSTILVSPRQRGNPVLTSIRSIPWEYSDIPADYVVGLTTCVLFLSLKYHRLH 123
Query: 190 LETIKVYENKPADLIQGQMDTDYLSRLT---HALTSVRSVNKTDVV 232
E I +QG+ + L L + S+R ++KT VV
Sbjct: 124 PEYIYTRIRN----LQGKYNLRILLTLVDIPNHEDSIRELSKTSVV 165
>gi|213406491|ref|XP_002174017.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus
yFS275]
gi|212002064|gb|EEB07724.1| mating-type switching protein swi10 [Schizosaccharomyces japonicus
yFS275]
Length = 251
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%)
Query: 156 IRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSR 215
+ N R + ++V +V + + L S E RY+ET K +E I + TDYL R
Sbjct: 113 VENHRESIQELVKTSVVNRYTLILAWSSAEAARYIETYKAFEFAAPTNIMERPSTDYLER 172
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ + TS+R +NK+D ++L + FGS+ + A+ E+L + G G KV+R + H+PF+
Sbjct: 173 VQNTFTSIRGINKSDCLSLIAHFGSMKRALTATQEELEQIDGFGPTKVRRFLEATHQPFR 232
>gi|451848127|gb|EMD61433.1| hypothetical protein COCSADRAFT_39164 [Cochliobolus sativus ND90Pr]
Length = 381
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E GRYLE K +EN I+ Q Y + +T RS+NKTD
Sbjct: 148 LVNNVTVMLCWSAQEAGRYLELFKTFENAAPTSIRAQQAGSYAENMVDFITVPRSINKTD 207
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGS+ ++A+ E++ G G++KV+R + EPF+
Sbjct: 208 AVGLVSNFGSIRTAINAAPEEIGLIAGWGDKKVQRWCNAVREPFR 252
>gi|330930989|ref|XP_003303225.1| hypothetical protein PTT_15356 [Pyrenophora teres f. teres 0-1]
gi|330938316|ref|XP_003305727.1| hypothetical protein PTT_18642 [Pyrenophora teres f. teres 0-1]
gi|311317153|gb|EFQ86194.1| hypothetical protein PTT_18642 [Pyrenophora teres f. teres 0-1]
gi|311320892|gb|EFQ88672.1| hypothetical protein PTT_15356 [Pyrenophora teres f. teres 0-1]
Length = 361
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E GRYLE K +EN I+ Q Y + +T RS+NKTD
Sbjct: 141 LVNNVTVMLCWSAQEAGRYLELFKTFENAAPTSIRAQQARTYAENMVDFITVPRSINKTD 200
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGS+ ++A E++ G G++KV+R + EPF+
Sbjct: 201 AVGLVSNFGSIRTAINAGPEEIGLIAGWGDKKVQRWCNAVREPFR 245
>gi|116202479|ref|XP_001227051.1| hypothetical protein CHGG_09124 [Chaetomium globosum CBS 148.51]
gi|88177642|gb|EAQ85110.1| hypothetical protein CHGG_09124 [Chaetomium globosum CBS 148.51]
Length = 363
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+GQ + Y RL +T+ R++NKTD
Sbjct: 165 LVHNVTIILAWSAAEAARYLELYKSYEHAGFGAIRGQQASSYAERLVDFVTAPRNINKTD 224
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S+FGSL + ++A + L G GE+KV+ EPF+
Sbjct: 225 AVALVSSFGSLRNAVNAQPDQLGVVGGWGEKKVRAWTKAVEEPFR 269
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 10/81 (12%)
Query: 101 PPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVR 160
PP+NP ++S P + Q Q + A S SS ILVS RQKGNP+L +++V
Sbjct: 46 PPSNPASSSATPKVVQPTPQAL-PARGSGSS---------ILVSPRQKGNPVLACLKSVA 95
Query: 161 WAFADVVCDYLVGQNSCALYL 181
W ++D++ DY +GQ +CALYL
Sbjct: 96 WEYSDILADYGLGQTTCALYL 116
>gi|345561961|gb|EGX45033.1| hypothetical protein AOL_s00173g134 [Arthrobotrys oligospora ATCC
24927]
Length = 370
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLG 235
+ L S E GRY+E K EN PA +I+ + DY+ R+ +TSV+ VNKTD + L
Sbjct: 155 TIMLAWSPAEAGRYVELYKALENTPATMIKERQKEDYMGRVEDVITSVKGVNKTDALGLI 214
Query: 236 STFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
FGS+ ++AS + + PG GE+K +R E F+
Sbjct: 215 MMFGSMRAAVNASEQQVELIPGWGEKKTRRWCTAVRENFR 254
>gi|358383843|gb|EHK21504.1| hypothetical protein TRIVIDRAFT_152287 [Trichoderma virens Gv29-8]
Length = 319
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E RYLE K YEN I+GQ ++Y +L +T RS+NK+D
Sbjct: 141 VVNNVTVILCWSAAEAARYLELYKSYENANFSAIRGQQSSNYADKLVEFVTVPRSLNKSD 200
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L + FGSL + ++A E L+ G G KVKR EPF+
Sbjct: 201 AVALVANFGSLKNAINAEPEQLSMISGWGGTKVKRWTSAVEEPFR 245
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 10/106 (9%)
Query: 133 QSIQSR---NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRY 189
Q IQ + +AILVS RQ+GNPLL IR++ W ++D+ DY++G +CAL+LSL+ +
Sbjct: 41 QVIQQKTFGSAILVSPRQRGNPLLTSIRSIPWEYSDIPADYVLGLTTCALFLSLKYHRLH 100
Query: 190 LETIKVYENKPADLIQGQMDTDYLSRLT---HALTSVRSVNKTDVV 232
E I +QG+ + L L + S+R ++KT VV
Sbjct: 101 PEYIYTRIRN----LQGKYNLRILLTLVDIPNHEDSLRELSKTSVV 142
>gi|406862988|gb|EKD16037.1| DNA repair protein rad10 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 406
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+G Y ++ +T RS+NKTD
Sbjct: 191 LVNNVTVMLCWSAAEAARYLELYKSYEHANPSAIRGTESKGYAEKMVDFVTVPRSINKTD 250
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF------KRVVSSHPPI 284
V++ S FGS+ ++A E++A G GE+KV+R EPF KRV P
Sbjct: 251 AVSIVSAFGSIKGAINARPEEVAVVGGWGEKKVRRWCAVVDEPFRARKATKRVAGVIPLR 310
Query: 285 PETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKE 318
PS E V E T D+ +RK E
Sbjct: 311 ESLPSMG--ESGDVRPKMSKELSTSDIGNQRKPE 342
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 103 ANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWA 162
A PPTTS P + Q Q + + + +S ILVS RQKGNP+L +R+ W
Sbjct: 74 APPPTTSTGPKVVQPTPQAIASHTTGSS----------ILVSPRQKGNPILTNLRSFPWE 123
Query: 163 FADVVCDYLVGQNSCALYLSLE 184
F+DV DY++G +CAL+LSL+
Sbjct: 124 FSDVPADYVLGLTTCALFLSLK 145
>gi|400599946|gb|EJP67637.1| DNA repair protein rad10 [Beauveria bassiana ARSEF 2860]
Length = 392
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + S E RYLE K YE+ D I+G+ + Y RL +T RS+NK+D
Sbjct: 165 MVNNVTIVCCWSAAEAARYLELYKAYEHASFDAIRGKQSSSYAERLVDFVTVPRSLNKSD 224
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L + FGSL + ++A E L G G KVKR EPF+
Sbjct: 225 AVALVANFGSLKNAINADAEQLGMLSGWGGVKVKRWSAAIEEPFR 269
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q + ILVS RQ+GNP+L +++++ W ++D+ DY++G +C L+LSL+
Sbjct: 71 QGASNILVSPRQRGNPVLTHLKSMPWEYSDIPADYVLGTTTCLLFLSLK 119
>gi|189189600|ref|XP_001931139.1| mating-type switching protein swi10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972745|gb|EDU40244.1| mating-type switching protein swi10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 364
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E GRYLE K +EN I+ Q Y ++ +T RS+NKTD
Sbjct: 144 LVNNVTVMLCWSAQEAGRYLELFKTFENAAPTSIRAQQAGTYPEKMVDFITVPRSINKTD 203
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGS+ ++A E++ G G++KV+R + EPF+
Sbjct: 204 AVGLVSNFGSIRTAINAGPEEIGLIAGWGDKKVQRWCNAVREPFR 248
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+ILVS RQKGNP+L +R+V W ++D+ DY+VG +CAL+LSL+
Sbjct: 54 SILVSPRQKGNPILNNVRSVAWEYSDIPADYVVGATTCALFLSLK 98
>gi|256074734|ref|XP_002573678.1| excision repair cross-complementing 1 ercc1 [Schistosoma mansoni]
gi|360043725|emb|CCD81271.1| putative excision repair cross-complementing 1 ercc1 [Schistosoma
mansoni]
Length = 218
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPAD--LIQGQMDTDYLSRLTHALTSVRSVNKTDVVT 233
+ L ++EE RYLE K ENKP D +++ TD+++++T LTSVR + K D V+
Sbjct: 113 TLMLAWNMEEAARYLEAYKALENKPPDNLMVEPATQTDHIAQVTDFLTSVRRITKADAVS 172
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
F +++ I+ A L +CPG G+ K ++L + F PF
Sbjct: 173 AMKKFDTVADIIRADQSTLEKCPGFGQLKARKLTEVFRMPF 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 147 QKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
Q+GNP+LK IRNV W +AD+ D++VG+N+C +LSL
Sbjct: 25 QRGNPVLKQIRNVAWEYADIDPDFVVGRNNCIYFLSL 61
>gi|219120827|ref|XP_002185645.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582494|gb|ACI65115.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 208
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 59/195 (30%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV---------------CDY------------- 170
+ + VS +Q+GN +L +IRNV AF+ ++ C Y
Sbjct: 13 HVLYVSTKQRGNGVLSFIRNVPQAFSRMIPDYVMSATRCALFLSCKYHSLYPNYIHRRIA 72
Query: 171 -----------------------------LVGQNSCALYLSL--EECGRYLETIKVYENK 199
L QN+ L L+ EE RYLET K ++ K
Sbjct: 73 ELKTDFTLRILLVLVDVEDNANVLLILNKLAVQNNLTLILAWTEEEAARYLETYKAFDGK 132
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
A +IQ + + + ++ L + + VNKTD L S F ++ + ASME++ G+G
Sbjct: 133 DASIIQKKEQSHFADQVADFLGTCKGVNKTDSAQLLSQFSNVRALAAASMEEMGLVMGMG 192
Query: 260 ERKVKRLYDTFHEPF 274
KVKRL+D H+PF
Sbjct: 193 GVKVKRLHDALHKPF 207
>gi|134113312|ref|XP_774681.1| hypothetical protein CNBF3600 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257325|gb|EAL20034.1| hypothetical protein CNBF3600 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 390
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 34/216 (15%)
Query: 110 QNPTLSQGGEQNVGTASASASSSQSIQSRNAIL-------------VSQRQKGNPLLKYI 156
+NP LS +NVG + + + N +L + QR + +K +
Sbjct: 111 RNPVLS--AIRNVGIEVGDIVADYQVGAHNGVLFLSLKYHRLHPEYIHQRIEK---MKNM 165
Query: 157 RNVRWAFADVVCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENKPAD 202
N R V+CD ++ + + + S EE +YL T K +E+K AD
Sbjct: 166 YNFRVIL--VLCDVNEHHQSLRELTKIAIINEFTVFVAWSNEEVAQYLVTFKQFEHKSAD 223
Query: 203 LIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERK 262
++ ++ Y +L H LTS + VNKTD L + FGS I S + L+ G+G K
Sbjct: 224 TLKERVQQTYHDQLAHVLTSGKKVNKTDADNLAAEFGSFESISRKSAKSLSNVKGLGATK 283
Query: 263 VKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSV 298
V L D F +PF P +T +K ++ +V
Sbjct: 284 VTSLIDAFTKPFLVGGLRQPEREKTAQEKQADKEAV 319
>gi|452847356|gb|EME49288.1| hypothetical protein DOTSEDRAFT_84711 [Dothistroma septosporum
NZE10]
Length = 364
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 56/100 (56%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLG 235
+ L S E RYLE K YEN I+ T Y R+ +T+ RSVNKTD V+L
Sbjct: 134 TIVLCWSAAEGARYLELFKTYENAAPTSIKQHQSTAYSDRMVDFVTTPRSVNKTDAVSLV 193
Query: 236 STFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
S FG++ ++A ED+A G GE+KV++ + EPF+
Sbjct: 194 SQFGTVRTAVNARHEDVATIAGWGEKKVQQWCHSVREPFR 233
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 34/45 (75%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+I+VS RQKGNP+L I+++ W + D+ DY++G +C L+LSL+
Sbjct: 39 SIIVSPRQKGNPVLDKIKSMPWEYGDIPADYILGLTTCCLFLSLK 83
>gi|159470289|ref|XP_001693292.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277550|gb|EDP03318.1| predicted protein [Chlamydomonas reinhardtii]
Length = 188
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLI---QGQMDTDYLSRLTHALT-SVRSV 226
+VG + S EEC R+LET K YE+K A Q +++ DY+SRL L SVR +
Sbjct: 91 VVGDCTLVCAWSPEECARWLETYKSYESKSATYFAVAQERVEADYISRLAAVLAGSVRGI 150
Query: 227 NKTDVVTLGSTFGSLSHIMDA-SMEDLARCPGIGERKV 263
N+TD TLG++FGSL+ +M E + CPGIG KV
Sbjct: 151 NRTDTHTLGTSFGSLADLMRCKDAEAFSACPGIGPTKV 188
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 37/43 (86%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
ILV++RQ+GNP+LK+IRNVRW F D++ DY +G N+ AL+LSL
Sbjct: 2 ILVNKRQQGNPVLKHIRNVRWQFGDIIPDYQLGLNTAALFLSL 44
>gi|297277349|ref|XP_001105868.2| PREDICTED: DNA excision repair protein ERCC-1 [Macaca mulatta]
Length = 213
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 11/72 (15%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYEN 198
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL Y N
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLR-----------YHN 147
Query: 199 KPADLIQGQMDT 210
D I G++ +
Sbjct: 148 LHPDYIHGRLQS 159
>gi|302895863|ref|XP_003046812.1| hypothetical protein NECHADRAFT_33938 [Nectria haematococca mpVI
77-13-4]
gi|256727739|gb|EEU41099.1| hypothetical protein NECHADRAFT_33938 [Nectria haematococca mpVI
77-13-4]
Length = 324
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 8/171 (4%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YEN I+GQ + Y +L +T RS+NK+D
Sbjct: 149 LVNNVTLILCWSAAEAARYLELYKSYENASFGAIRGQQPSSYGEKLVEFVTVPRSLNKSD 208
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETP-- 288
V L S FGSL + ++A E L G G KVKR +PF+ ++ T
Sbjct: 209 AVALVSNFGSLKNAVNADAEQLGMLNGWGGIKVKRWTSAVGDPFRVKKAAKRGAKATQRL 268
Query: 289 ---SQKDVERSSVNEVTEVEKDT---EDVNKRRKKETESTVKSALSAAFAK 333
Q D E + + E K T ++ + + + + + ++AA A+
Sbjct: 269 SKLDQADDEEAMLAAAIEASKKTAQSDEAKRASQADKDDQLDGGVAAALAR 319
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
QS + ILVS RQ+GNP+L IR++ W ++D+ D+++G +CAL+LSL+
Sbjct: 55 QSGSTILVSPRQRGNPVLTSIRSMPWEYSDIPADFVLGLGTCALFLSLK 103
>gi|332024090|gb|EGI64307.1| DNA excision repair protein ERCC-1 [Acromyrmex echinatior]
Length = 262
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 24/104 (23%)
Query: 80 QSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRN 139
SF AFS +K SEF+ P A+ P TS TA +S+ +S
Sbjct: 23 MSFETAFSNLKKSEFFTDLP---ASKPETS--------------TAISSSRTS------- 58
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+LVS +QKGNPLLK+I NV W ++D+V DY++G+ +CAL+LS+
Sbjct: 59 TVLVSPKQKGNPLLKFITNVLWEYSDIVPDYVMGKTTCALFLSI 102
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
++ + L + E+ G+ +ET K+YENKP D I + +T +L +ALT+VRSVNKTD
Sbjct: 149 ILADLTIMLAWNAEDAGKIIETYKIYENKPPDNIMERSETAPYQKLVNALTTVRSVNKTD 208
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
TL +TFG+L++I+ A L CPG G K ++L+ HE F
Sbjct: 209 ATTLLTTFGTLANIVRAQPNTLTLCPGFGLHKAQKLHKVLHESF 252
>gi|307175305|gb|EFN65335.1| DNA excision repair protein ERCC-1 [Camponotus floridanus]
Length = 256
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 28/127 (22%)
Query: 57 ITIPSYQEVINATNPPQNLFTPSQSFSQAFSFIKSSEFYNPPPPPPANPPTTSQNPTLSQ 116
++I + +++ N + P Q T SF AFS +K SEF+ P P
Sbjct: 4 LSIENTEDLNNVSAPKQARIT---SFQSAFSNLKKSEFFKEELPSP-------------- 46
Query: 117 GGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNS 176
TA S S N +LV+ +QKGNPLLK+I NV W ++D+V DY++G+ +
Sbjct: 47 ----ETSTAIISHIS-------NVVLVNPKQKGNPLLKFITNVSWEYSDIVPDYIMGKTT 95
Query: 177 CALYLSL 183
CAL+LS+
Sbjct: 96 CALFLSI 102
>gi|342880208|gb|EGU81382.1| hypothetical protein FOXB_08111 [Fusarium oxysporum Fo5176]
Length = 386
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RY+E K YEN I+GQ + Y +L +T RS+NK+D
Sbjct: 162 LVNNVTLILCWSAAEAARYIELYKSYENATFGAIRGQQPSSYGEKLVEFVTVPRSLNKSD 221
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V + S FGSL + ++A E L G G KVKR EPF+
Sbjct: 222 AVAVVSNFGSLKNAINADAEQLGMLNGWGGVKVKRWQSAVEEPFR 266
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
QS + ILVS RQ+GNP+L IR++ W ++D+ DY++G +CAL+LSL+
Sbjct: 68 QSGSTILVSPRQRGNPVLTSIRSMPWEYSDIPADYVLGLGTCALFLSLK 116
>gi|380482107|emb|CCF41448.1| DNA repair protein rad10 [Colletotrichum higginsianum]
Length = 412
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ + I+GQ + Y +L +T RSVNK+D
Sbjct: 170 LVNNVTIILCWSAAEAARYLELYKSYEHANFNAIRGQQASTYAEKLVEFVTVPRSVNKSD 229
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQ 290
V L S FGSL + ++A E + G G KV + EPF+ S+ + T S
Sbjct: 230 AVALVSNFGSLKNAINADPEQIGIIAGWGAVKVNKWAKAVEEPFRAKTSAKRHLERTEST 289
Query: 291 KD 292
+D
Sbjct: 290 ED 291
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
S +AILVS RQ+GNP+L ++++ W ++D+ DY +G +CAL+LSL+
Sbjct: 77 SGSAILVSPRQRGNPVLASLKSMPWEYSDIAADYGLGLTTCALFLSLK 124
>gi|187960071|ref|NP_001120796.1| DNA excision repair protein ERCC-1 isoform b [Mus musculus]
Length = 245
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 65/171 (38%)
Query: 117 GGEQNVGTASASASS---SQSIQS---RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY 170
G V T S A+ SQ++++ N+I+VS RQ+GNP+LK++RNV W F +V+ DY
Sbjct: 71 GAGATVPTGSEPAAGENPSQTLKTGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDY 130
Query: 171 L----------------------------VGQN--------------------------- 175
+ +G+N
Sbjct: 131 VLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCI 190
Query: 176 --SCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS 222
C L L S EE GRYLET K YE KPADL+ +++ ++LSR++ L S
Sbjct: 191 LADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRVSLCLLS 241
>gi|258568358|ref|XP_002584923.1| mating-type switching protein swi10 [Uncinocarpus reesii 1704]
gi|237906369|gb|EEP80770.1| mating-type switching protein swi10 [Uncinocarpus reesii 1704]
Length = 360
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E G YLE K EN P I+ Q Y L +T+ RS+NK+D
Sbjct: 147 IVNNLTLILCWSAAEAGHYLELFKSSENAPPTAIRSQQAQSYRDSLVEFITTPRSINKSD 206
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A + ++ PG GE+KVK+ D E F+
Sbjct: 207 AASLISTFGSLQAAINAQPDQISSVPGWGEKKVKQWTDAVKEDFR 251
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+R+AILVS RQKGNP+L ++R + W +AD+ DY++G +CAL+LSL+
Sbjct: 54 ARSAILVSSRQKGNPILNHVRLLPWEYADIPADYVLGATTCALFLSLK 101
>gi|46134239|ref|XP_389435.1| hypothetical protein FG09259.1 [Gibberella zeae PH-1]
Length = 386
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RY+E K YEN I+GQ + Y +L +T RS+NK+D
Sbjct: 159 LVNNVTLILCWSAAEAARYIELYKSYENASFGAIRGQQPSSYGEKLVEFVTVPRSLNKSD 218
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V + S FGSL + ++A E L G G KVKR EPF+
Sbjct: 219 AVAVVSNFGSLRNAINADAEQLGMLNGWGGVKVKRWVSAVEEPFR 263
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
QS + ILVS RQ+GNP+L IR++ W ++D+ DY++G +CAL+LSL+
Sbjct: 65 QSGSTILVSPRQRGNPVLTSIRSMPWEYSDIPSDYVLGLGTCALFLSLK 113
>gi|408390738|gb|EKJ70125.1| hypothetical protein FPSE_09651 [Fusarium pseudograminearum CS3096]
Length = 387
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RY+E K YEN I+GQ + Y +L +T RS+NK+D
Sbjct: 159 LVNNVTLILCWSAAEAARYIELYKSYENASFGAIRGQQPSSYGEKLVEFVTVPRSLNKSD 218
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V + S FGSL + ++A E L G G KVKR EPF+
Sbjct: 219 AVAVVSNFGSLRNAINADAEQLGMLNGWGGVKVKRWVSAVEEPFR 263
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
QS + ILVS RQ+GNP+L IR++ W ++D+ DY++G +CAL+LSL+
Sbjct: 65 QSGSTILVSPRQRGNPVLTSIRSMPWEYSDIPSDYVLGLGTCALFLSLK 113
>gi|346326072|gb|EGX95668.1| mating-type switching protein swi10 [Cordyceps militaris CM01]
Length = 388
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLG 235
SC S E RYLE K YE+ + I+G+ + Y RL +T RS+NK+D V L
Sbjct: 178 SC---WSAAEAARYLELYKAYEHASFEAIRGKQSSSYAERLVDFVTVPRSLNKSDAVALV 234
Query: 236 STFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ FGSL + ++A E L G G KVKR EPF+
Sbjct: 235 ANFGSLRNAINADAEQLGMLSGWGGVKVKRWSAAIEEPFR 274
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCA-LYLSLE 184
Q + ILVS RQ+GNP+L +I+++ W ++D+ DY++G A L+LSL+
Sbjct: 75 QGASNILVSPRQRGNPVLTHIKSMPWEYSDIPADYILGVTMTAVLFLSLK 124
>gi|56757477|gb|AAW26906.1| SJCHGC00905 protein [Schistosoma japonicum]
Length = 355
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 184 EECGRYLETIKVYENKPADLIQGQ--MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
EE RYLE K ENKP D + + TDY +++ LTSVR + K D ++ F ++
Sbjct: 258 EEAARYLEAYKALENKPPDSLMAEPATGTDYTAQVIDFLTSVRRITKADAMSAMRKFNTV 317
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ I+ A L +CPG G+ K ++L + F PF
Sbjct: 318 ADIIRADQSTLEKCPGFGQLKARKLCEVFRMPF 350
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 109 SQNPTLSQGGEQNVGTASASASSSQ--SIQSRNAILVSQRQKGNPLLKYIRNVRWAFADV 166
SQ+ ++S+ ++G+A S + ++ AILV+QRQ+GNP+LK+IRNV W +AD+
Sbjct: 122 SQSSSVSRVLASSIGSAEDSKRTQTRPTLACGQAILVNQRQRGNPVLKHIRNVAWEYADI 181
Query: 167 VCDYLVGQNSCALYLSL 183
D++VG+N+C +LSL
Sbjct: 182 EPDFVVGRNNCIYFLSL 198
>gi|453089965|gb|EMF18005.1| hypothetical protein SEPMUDRAFT_146885 [Mycosphaerella populorum
SO2202]
Length = 410
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 59/195 (30%)
Query: 140 AILVSQRQKGNPLLKYIRNV---------------------------------------- 159
+I+VS RQKGNPLL+ I+++
Sbjct: 88 SIIVSPRQKGNPLLEKIKSLPWEYGDIPADYVLGVTTCALFLSLKYHRLHPEYIYTRIKN 147
Query: 160 ---RWAFADVVCDY----------------LVGQNSCALYLSLEECGRYLETIKVYENKP 200
++A V+C ++ + L S E RYLE K YE+
Sbjct: 148 LQGKYALRIVLCMVDIQNHEESLKELSKTSVINNVTIILCWSAAEGARYLELFKTYEHAA 207
Query: 201 ADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE 260
I+ T Y R+ +T+ RS+NKTD V+L S FG+L ++A E++A G GE
Sbjct: 208 PTSIKQHQSTSYSDRMVDFVTTPRSINKTDAVSLVSQFGTLRTAVNARHEEVASIGGWGE 267
Query: 261 RKVKRLYDTFHEPFK 275
+KV++ + EPF+
Sbjct: 268 KKVQQWVGSVTEPFR 282
>gi|58268204|ref|XP_571258.1| mating-type switching protein swi10 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227493|gb|AAW43951.1| mating-type switching protein swi10, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 390
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 110 QNPTLSQGGEQNVGTASASASSSQSIQSRNAIL-------------VSQRQKGNPLLKYI 156
+NP LS +NVG + + + N +L + QR + +K +
Sbjct: 111 RNPVLS--AIRNVGIEVGDIVADYQVGAHNGVLFLSLKYHRLHPEYIHQRIEK---MKNM 165
Query: 157 RNVRWAFADVVCDY--------------LVGQNSCALYLSLEECGRYLETIKVYENKPAD 202
N R V+CD ++ + + + S EE +YL T K +E+K AD
Sbjct: 166 YNFRVIL--VLCDVNEHHQSLRELTKIAIINEFTVFVAWSNEEVAQYLVTFKQFEHKSAD 223
Query: 203 LIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERK 262
++ ++ Y +L H LTS + VNKTD L + FGS I S + L+ G+G K
Sbjct: 224 TLKERVQQTYHDQLAHVLTSGKKVNKTDADNLAAEFGSFESISRKSAKSLSNVKGLGATK 283
Query: 263 VKRLYDTFHEPF 274
V L D F +PF
Sbjct: 284 VTSLIDAFTKPF 295
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 123 GTASASASSSQSIQ-------SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQN 175
GT S +SSQ+ + S+N+I+ + R+ NP+L IRNV D+V DY VG +
Sbjct: 80 GTGGPSTNSSQTSRPINRPAASKNSIIYNARR--NPVLSAIRNVGIEVGDIVADYQVGAH 137
Query: 176 SCALYLSLE 184
+ L+LSL+
Sbjct: 138 NGVLFLSLK 146
>gi|321260416|ref|XP_003194928.1| mating-type switching protein swi10 [Cryptococcus gattii WM276]
gi|317461400|gb|ADV23141.1| mating-type switching protein swi10, putative [Cryptococcus gattii
WM276]
Length = 387
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 43/214 (20%)
Query: 97 PPPPPPANPPTTSQN---------PTLSQGGEQNVGTASASASSSQSIQSRNAIL----- 142
P P N P S+N P LS +NVG + + + N +L
Sbjct: 89 PQISRPINRPAASKNSIIYNARRNPVLS--AIRNVGIEVGDIVADYQVGAHNGVLFLSLK 146
Query: 143 --------VSQRQKGNPLLKYIRNVRWAFADVVCDY--------------LVGQNSCALY 180
+ QR + +K + N R V+CD ++ + + +
Sbjct: 147 YHRLHPEYIHQRIEK---MKNMYNFRVIL--VLCDVNEHHQSLRELTKIAIINEFTVFVA 201
Query: 181 LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGS 240
S EE +YL T K +E+K AD ++ ++ Y +L H LTS + VNKTD L + FGS
Sbjct: 202 WSNEEVAQYLVTFKQFEHKSADTLKERVQQTYHDQLAHVLTSGKKVNKTDADNLAAEFGS 261
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I S + L+ G+G KV L D F +PF
Sbjct: 262 FEAISRKSAKSLSNVKGLGATKVTSLMDAFTKPF 295
>gi|346977002|gb|EGY20454.1| mating-type switching protein swi10 [Verticillium dahliae VdLs.17]
Length = 408
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+GQ + Y +L +T RSVNK D
Sbjct: 176 LVSNVTVILCWSAAEAARYLELYKSYEHANFSAIRGQQSSSYAEKLVDFVTVPRSVNKAD 235
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ L STFGSL ++A E + G G KV + EPF+
Sbjct: 236 AIALVSTFGSLKDAVNADAEQIGVIAGWGTIKVNKWIAAVDEPFR 280
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 10/70 (14%)
Query: 125 ASASASSSQSIQ----------SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQ 174
ASASAS + +Q S +AI VS RQ+GNP+L +R++ W ++D+ D+++G
Sbjct: 61 ASASASGGKVVQPTPQALPKRSSGSAIQVSPRQRGNPVLASLRSLPWEYSDIPADFVLGL 120
Query: 175 NSCALYLSLE 184
+CAL+LSL+
Sbjct: 121 TTCALFLSLK 130
>gi|452987609|gb|EME87364.1| hypothetical protein MYCFIDRAFT_201097 [Pseudocercospora fijiensis
CIRAD86]
Length = 371
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTF 238
L S E RYLE K YEN I+ T Y R+ +T+ R+VNKTD V++ S F
Sbjct: 142 LCWSAAEGARYLELYKTYENAAPTSIRQHQSTTYSDRMIDFVTTPRAVNKTDAVSIVSQF 201
Query: 239 GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
G++ ++A E++A G GE+KV++ ++ EPF+
Sbjct: 202 GTIRTAVNARHEEVAMIAGWGEKKVQQWCNSVREPFR 238
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Query: 133 QSIQSRNA---ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q++ +R+A I+VS RQKGNP+L I+++ W + D+ DYL+G +CAL+LSL+
Sbjct: 34 QALPNRSAPASIIVSPRQKGNPVLDKIKSMPWEYGDIPADYLLGLTTCALFLSLK 88
>gi|302408192|ref|XP_003001931.1| mating-type switching protein swi10 [Verticillium albo-atrum
VaMs.102]
gi|261359652|gb|EEY22080.1| mating-type switching protein swi10 [Verticillium albo-atrum
VaMs.102]
Length = 414
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 52/105 (49%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+GQ + Y +L +T RSVNK D
Sbjct: 176 LVSNVTVILCWSAAEAARYLELYKSYEHANFSAIRGQQSSSYAEKLVDFVTVPRSVNKAD 235
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+ L STFGSL ++A E + G G KV + EPF+
Sbjct: 236 AIALVSTFGSLKDAVNADAEQIGVIAGWGTIKVNKWIAAVDEPFR 280
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 10/70 (14%)
Query: 125 ASASASSSQSIQ----------SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQ 174
ASASA+ + +Q S +AI VS RQ+GNP+L +R++ W ++D+ D+++G
Sbjct: 61 ASASATGGKVVQPTPQALPKRSSGSAIQVSPRQRGNPVLASLRSLPWEYSDIPADFVLGL 120
Query: 175 NSCALYLSLE 184
+CAL+LSL+
Sbjct: 121 TTCALFLSLK 130
>gi|389640635|ref|XP_003717950.1| mating-type switching protein swi10 [Magnaporthe oryzae 70-15]
gi|351640503|gb|EHA48366.1| mating-type switching protein swi10 [Magnaporthe oryzae 70-15]
Length = 408
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+ T Y +L +T R++NK+D
Sbjct: 183 LVNDVTLMLCWSSHEAARYLELYKSYEHASFAAIRAPPSTGYAEKLVEFVTVPRAINKSD 242
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L STFGSL + ++A + +A G GERKVK +PF+
Sbjct: 243 AVALVSTFGSLRNAINADPDQVAAVSGWGERKVKAWCKVVEQPFR 287
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 14/86 (16%)
Query: 99 PPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRN 158
PPP AN GG + + A S+S S ++ILVS RQK NP+L++I++
Sbjct: 66 PPPAAN------------GGAAKIVQPTPQALPSKS--SGSSILVSPRQKSNPVLEWIKS 111
Query: 159 VRWAFADVVCDYLVGQNSCALYLSLE 184
V W ++D+ DY++G +CAL+LSL+
Sbjct: 112 VPWEYSDIPADYVLGLTTCALFLSLK 137
>gi|405121412|gb|AFR96181.1| mating-type switching protein swi10 [Cryptococcus neoformans var.
grubii H99]
Length = 395
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 90/212 (42%), Gaps = 43/212 (20%)
Query: 90 KSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAIL------- 142
KSS YN +NP LS +NVG + + + N +L
Sbjct: 102 KSSIIYNA---------VQRRNPVLS--AIRNVGIEVGDIVADYQVGAHNGVLFLSLKYH 150
Query: 143 ------VSQRQKGNPLLKYIRNVRWAFADVVCDY--------------LVGQNSCALYLS 182
+ QR + LK + N R ++CD ++ + + + S
Sbjct: 151 RLHPEYIHQRIEK---LKNMYNFRVIL--LLCDVNEHHQSLRELTKIAIINEFTIFVAWS 205
Query: 183 LEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLS 242
EE +YL T K +E+K AD ++ ++ Y +L H LTS + VNKTD L + FGS
Sbjct: 206 NEEVAQYLVTFKQFEHKSADTLKERVQQTYHDQLAHVLTSGKKVNKTDADNLAAEFGSFE 265
Query: 243 HIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I S + L+ G+G KV L D F +PF
Sbjct: 266 AISRKSAKSLSNVKGLGATKVTSLIDAFTKPF 297
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 122 VGTASASASSSQSIQ-------SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQ 174
VGT ++SQ+ + S+++I+ + Q+ NP+L IRNV D+V DY VG
Sbjct: 79 VGTGGTLINTSQTSRPINRPAASKSSIIYNAVQRRNPVLSAIRNVGIEVGDIVADYQVGA 138
Query: 175 NSCALYLSLE 184
++ L+LSL+
Sbjct: 139 HNGVLFLSLK 148
>gi|440471052|gb|ELQ40089.1| mating-type switching protein swi10 [Magnaporthe oryzae Y34]
gi|440481374|gb|ELQ61967.1| mating-type switching protein swi10 [Magnaporthe oryzae P131]
Length = 478
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 55/105 (52%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+ T Y +L +T R++NK+D
Sbjct: 253 LVNDVTLMLCWSSHEAARYLELYKSYEHASFAAIRAPPSTGYAEKLVEFVTVPRAINKSD 312
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L STFGSL + ++A + +A G GERKVK +PF+
Sbjct: 313 AVALVSTFGSLRNAINADPDQVAAVSGWGERKVKAWCKVVEQPFR 357
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 14/83 (16%)
Query: 99 PPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRN 158
PPP AN GG + + A S+S S ++ILVS RQK NP+L++I++
Sbjct: 114 PPPAAN------------GGAAKIVQPTPQALPSKS--SGSSILVSPRQKSNPVLEWIKS 159
Query: 159 VRWAFADVVCDYLVGQNSCALYL 181
V W ++D+ DY++G +CAL+L
Sbjct: 160 VPWEYSDIPADYVLGLTTCALFL 182
>gi|73536053|pdb|2A1I|A Chain A, Crystal Structure Of The Central Domain Of Human Ercc1
Length = 146
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Query: 122 VGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYL 181
+G++ SQ N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+L
Sbjct: 1 MGSSHHHHHHSQDPAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFL 60
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDT 210
SL Y N D I G++ +
Sbjct: 61 SLR-----------YHNLHPDYIHGRLQS 78
>gi|159794885|pdb|2JNW|A Chain A, Solution Structure Of A Ercc1-Xpa Heterodimer
Length = 133
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 11/89 (12%)
Query: 122 VGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYL 181
+G++ SQ N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+L
Sbjct: 1 MGSSHHHHHHSQDPAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFL 60
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDT 210
SL Y N D I G++ +
Sbjct: 61 SLR-----------YHNLHPDYIHGRLQS 78
>gi|158429049|pdb|2JPD|A Chain A, Solution Structure Of The Ercc1 Central Domain
Length = 135
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 11/72 (15%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYEN 198
N+I+VS RQ+GNP+LK++RNV W F DV+ DY++GQ++CAL+LSL Y N
Sbjct: 5 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLR-----------YHN 53
Query: 199 KPADLIQGQMDT 210
D I G++ +
Sbjct: 54 LHPDYIHGRLQS 65
>gi|221053253|ref|XP_002258001.1| nucleotide excision repair protein [Plasmodium knowlesi strain H]
gi|193807833|emb|CAQ38538.1| nucleotide excision repair protein, putative [Plasmodium knowlesi
strain H]
Length = 230
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTF 238
L S+EEC R +E K+YE K + ++ + + ++ L +RS+N +D T+ + F
Sbjct: 134 LCWSIEECARVIEDFKIYEKKIPYIKNNKLTSTHAEKIHELLKKIRSINSSDCATITNKF 193
Query: 239 GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
S +I+ A +DL C G+G +K++ L F++PF
Sbjct: 194 KSFKNIVMAKKDDLINCSGLGNKKIQSLISAFNDPF 229
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 68/119 (57%), Gaps = 17/119 (14%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQK NP+LK I VR+ F++++ D+L+G+N+ L++S++ Y
Sbjct: 37 LVISPRQKLNPILKKINRVRYKFSNIIPDFLIGKNNACLFISMK-----------YHRLR 85
Query: 201 ADLIQGQMDT---DYLSRLTHALTSVRSVNKT--DVVTLGSTFGSLSHIMDASMEDLAR 254
++ ++ +++T Y +R+ L + ++ + ++ L F +++ I+ S+E+ AR
Sbjct: 86 SNYLKARIETLSNKYNNRILLCLVDIENIENSLGEINQLAFCF-NMTLILCWSIEECAR 143
>gi|392573917|gb|EIW67055.1| hypothetical protein TREMEDRAFT_23521, partial [Tremella
mesenterica DSM 1558]
Length = 187
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
EE +YL T K +E+K AD ++ ++ Y +L H LTS + VNKTD L + FGS ++
Sbjct: 97 EEVAQYLTTFKAFEHKSADTLKERVHQTYHDQLQHVLTSGKKVNKTDADNLAAQFGSFAN 156
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I + LA G+G KV L D F++PF
Sbjct: 157 IAKQPPKVLANVKGLGAAKVTSLVDAFNKPF 187
>gi|225560421|gb|EEH08702.1| mating-type switching protein swi10 [Ajellomyces capsulatus G186AR]
Length = 343
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E G YLE K E+ I+ Q Y L +T+ RS+NK+D
Sbjct: 145 LVNNLTLILCWSAAEAGHYLELFKSCEHAQPTAIRTQQSQSYNESLVEFITTPRSINKSD 204
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GE+KV++ +D + F+
Sbjct: 205 AASLISTFGSLQAAVNAQAEQISTVPGWGEKKVQQWHDAVRDDFQ 249
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Query: 133 QSIQSRNA---ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q++ SR++ ILVS RQ+GNP+L ++R+V W +AD+ DY+VG +C L+LSL+
Sbjct: 45 QALPSRSSPSSILVSARQRGNPILNHVRHVPWEYADIPADYIVGSTTCVLFLSLK 99
>gi|156093842|ref|XP_001612959.1| ERCC1 nucleotide excision repair protein [Plasmodium vivax Sal-1]
gi|148801833|gb|EDL43232.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium
vivax]
Length = 229
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 54/96 (56%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTF 238
L S EEC R +E K+YE K + + ++ + + ++ L +R +N +D T+ + F
Sbjct: 133 LCWSTEECARVIEDFKIYEKKISYIRNNKLTSTHAEKIHELLKKIRCINSSDCATITNKF 192
Query: 239 GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
S +I+ A +DL C G+G +K++ L F++PF
Sbjct: 193 KSFKNIVTAKKDDLINCSGLGNKKIQALISAFNDPF 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 17/119 (14%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQK NP+LK I VR+ F++++ D+L+G+N+ L++S++ Y
Sbjct: 36 LVISPRQKLNPVLKKINRVRYKFSNIIPDFLIGKNNACLFISMK-----------YHRLR 84
Query: 201 ADLIQGQMDT---DYLSRLTHALTSVRSVNKT--DVVTLGSTFGSLSHIMDASMEDLAR 254
++ ++ +++T Y +R+ L + ++ + ++ L F +++ I+ S E+ AR
Sbjct: 85 SNYLKARIETLSNKYSNRILLCLVDIENIENSLGEINQLAFCF-NMTLILCWSTEECAR 142
>gi|240279976|gb|EER43480.1| mating-type switching protein swi10 [Ajellomyces capsulatus H143]
gi|325088693|gb|EGC42003.1| mating-type switching protein swi10 [Ajellomyces capsulatus H88]
Length = 361
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E G YLE K E+ I+ Q Y L +T+ RS+NK+D
Sbjct: 145 LVNNLTLILCWSAAEAGHYLELFKSCEHAQPTAIRTQQSQSYNESLVEFITTPRSINKSD 204
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GE+KV++ +D + F+
Sbjct: 205 AASLISTFGSLQAAVNAQAEQISTVPGWGEKKVQQWHDAVRDDFQ 249
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Query: 133 QSIQSRNA---ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q++ SR++ ILVS RQ+GNP+L ++R+V W FAD+ DY+VG +C L+LSL+
Sbjct: 45 QALPSRSSPSSILVSARQRGNPILNHVRHVPWEFADIPADYIVGSTTCVLFLSLK 99
>gi|310798606|gb|EFQ33499.1| DNA repair protein rad10 [Glomerella graminicola M1.001]
Length = 404
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 53/105 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+GQ + Y +L +T RSVNK+D
Sbjct: 170 LVNNVTIILCWSAAEAARYLELYKSYEHANFSAIRGQQASTYAEKLVEFVTVPRSVNKSD 229
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S FGSL + ++A E + G G KV + EPF+
Sbjct: 230 AVALVSNFGSLKNAINADPEQIGIIAGWGAIKVNKWVRAVEEPFR 274
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
S +AILVS RQ+GNP+L ++++ W ++D+V DY +G +CAL+LSL+
Sbjct: 77 SGSAILVSPRQRGNPVLASLKSMPWEYSDIVADYSLGLTTCALFLSLK 124
>gi|320590234|gb|EFX02677.1| mating-type switching protein swi10 [Grosmannia clavigera kw1407]
Length = 366
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPA-DLIQGQMDTDYLSRLTHALTSVRSVNKT 229
LV Q + L S+ E RYLE K +E+ I+GQ Y RL T R++NK
Sbjct: 193 LVNQMTLLLCWSVAEAARYLELYKTFEHATGFAAIRGQQAAGYAERLVQFATVPRAINKA 252
Query: 230 DVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---KRVVSSHPPIPE 286
D V L S FGS+ + A E LA G GE+KV+ PF K S P P+
Sbjct: 253 DAVALVSAFGSVRRAVLAEPEQLALVTGWGEKKVQGWRRAVEAPFRVQKTKARSTRPRPK 312
Query: 287 TPSQKDVERSSVNEVTEVEK-DTED-VNKRRKKETESTVKSALSAAFAKYAD 336
P + + ++++ V E E +T D V++ ES++ ++AA A+ D
Sbjct: 313 -PGRNNTN-NNLSAVVEAETPETPDKVDEPPAAPAESSLSDGVAAALARLRD 362
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 123 GTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLS 182
GT + S + S + ILVS RQK NP+L +R V W ++D+V DY +G +CAL+LS
Sbjct: 86 GTTAGSGRPTVVPSSGSTILVSPRQKNNPVLSQLRTVAWEYSDIVADYGLGTTTCALFLS 145
Query: 183 LE 184
L+
Sbjct: 146 LK 147
>gi|361131533|gb|EHL03206.1| putative Mating-type switching protein swi10 [Glarea lozoyensis
74030]
Length = 387
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
++ + L S E RYLE K +E+ I+G Y ++ +T RS+NKTD
Sbjct: 169 MINNVTVILCWSAAEAARYLELYKSFEHAKPSAIRGSESKGYAEKMVEFITIPRSINKTD 228
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V+L S FGS+ + ++A E++A G GE+KV++ EPF+
Sbjct: 229 AVSLVSAFGSIKNAVNARPEEIAIVGGWGEKKVRKWCTVVDEPFR 273
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q+I S++ +ILVS RQKGNP+L +R+ W ++D++ DY++G +CAL+LSL+
Sbjct: 69 QAIASKSTGSSILVSTRQKGNPILTNLRSFAWEYSDILADYVLGLTTCALFLSLK 123
>gi|85096839|ref|XP_960331.1| mating-type switching protein swi10 [Neurospora crassa OR74A]
gi|28921819|gb|EAA31095.1| mating-type switching protein swi10 [Neurospora crassa OR74A]
Length = 405
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E RYLE K YE+ A I+GQ T Y ++ +T RSVNKTD
Sbjct: 177 LVNNVTVILCWSAQEAARYLELYKSYEHASASAIRGQQKTTYAEQMVEFVTVPRSVNKTD 236
Query: 231 VVTLGSTFGSLSHIMDASM-----EDLARCPGIGERKVKRLYDTFHEPFK 275
+ L STFGSL + ++ + E L G GE+KVK F+
Sbjct: 237 AIALVSTFGSLRNAINVATEANGEERLGNVQGWGEKKVKSWRRAVEGSFR 286
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
Query: 130 SSSQSIQ------------SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSC 177
+ + +Q S ++ILVS RQKGNP+L I++ W ++D+ DY++G +C
Sbjct: 64 TGPRIVQPTPQALPGARSSSGSSILVSPRQKGNPVLASIKSTAWEYSDIPADYVLGTTTC 123
Query: 178 ALYLSLE 184
AL+LSL+
Sbjct: 124 ALFLSLK 130
>gi|32398840|emb|CAD98550.1| excision repair cross-complementing rodent repair
deficiency,complementation group 1, possible
[Cryptosporidium parvum]
Length = 224
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 179 LYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
L+L+ +E G LET+K +EN +++I+G + D SR+ AL+S+ +NKTD L
Sbjct: 124 LFLAWSPKEAGHILETLKSHENSSSEIIRGGLSLDLFSRIRDALSSLPRINKTDSENLLK 183
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
FGS+S +++AS E+L++ GIG K K + + F F
Sbjct: 184 HFGSISKVVNASEEELSKIQGIGPIKAKVISEIFSTEF 221
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
I+ S RQ+GNP+L ++ NV + F ++V D+LVG+ +++S++
Sbjct: 26 IIASTRQRGNPILAHVCNVPYDFQNIVPDFLVGKYDAVVFISIK 69
>gi|171682146|ref|XP_001906016.1| hypothetical protein [Podospora anserina S mat+]
gi|170941032|emb|CAP66682.1| unnamed protein product [Podospora anserina S mat+]
Length = 290
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 49/95 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E GRYLE K YE+ A I+GQ T Y +L +T R VNK D
Sbjct: 195 LVNNVTVILCWSAAEAGRYLELYKSYEHASAAGIKGQQATGYAEKLVEFVTVPRVVNKAD 254
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKR 265
V L TFGSL ++A E L G GE ++R
Sbjct: 255 AVALVGTFGSLRGAVNADGETLGTVGGWGENTIRR 289
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 98 PPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIR 157
PPPP + T S P + Q Q + + ++ + SS ILVS RQKGNP+L I+
Sbjct: 71 PPPPQRHASTASGPPKIVQPTPQPLPSRASGSGSS--------ILVSPRQKGNPVLACIK 122
Query: 158 NVRWAFADVVCDYLVGQNSCALYLSLE 184
++ W ++D+ DY +G +CAL+LSL+
Sbjct: 123 SIPWEYSDIPADYALGATTCALFLSLK 149
>gi|67612623|ref|XP_667238.1| excision repair cross-complementing rodent repair
deficiency,complementation group 1 [Cryptosporidium
hominis TU502]
gi|54658355|gb|EAL37009.1| excision repair cross-complementing rodent repair
deficiency,complementation group 1 [Cryptosporidium
hominis]
Length = 224
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 179 LYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
L+L+ +E G LET+K +EN +++I+G + D SR+ AL+S+ +NKTD L
Sbjct: 124 LFLAWSPKEAGHILETLKSHENSSSEIIRGGLSLDLFSRIRDALSSLPRINKTDSENLLK 183
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
FGS+S +++AS E+L++ GIG K K + + F F
Sbjct: 184 HFGSISKVVNASEEELSKIQGIGPIKAKVISEVFSTEF 221
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
I+ S RQ+GNP+L ++ NV + F ++V D+LVG+ +++S++
Sbjct: 26 IIASTRQRGNPILAHVCNVPYDFQNIVPDFLVGKYDAVVFISIK 69
>gi|66475596|ref|XP_627614.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
parvum Iowa II]
gi|46229292|gb|EAK90141.1| ERCC1 excision repair 1; C-terminal HhH domain [Cryptosporidium
parvum Iowa II]
Length = 240
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 179 LYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
L+L+ +E G LET+K +EN +++I+G + D SR+ AL+S+ +NKTD L
Sbjct: 140 LFLAWSPKEAGHILETLKSHENSSSEIIRGGLSLDLFSRIRDALSSLPRINKTDSENLLK 199
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
FGS+S +++AS E+L++ GIG K K + + F F
Sbjct: 200 HFGSISKVVNASEEELSKIQGIGPIKAKVISEIFSTEF 237
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
I+ S RQ+GNP+L ++ NV + F ++V D+LVG+ +++S++
Sbjct: 42 IIASTRQRGNPILAHVCNVPYDFQNIVPDFLVGKYDAVVFISIK 85
>gi|300123590|emb|CBK24862.2| unnamed protein product [Blastocystis hominis]
Length = 245
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 56/89 (62%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSL 241
S E G+Y+ K YE + ++IQ + D S+ ++ LTS+ +NK +VV+L S F ++
Sbjct: 143 SFIEAGQYIGCFKAYEKRGGEIIQKYVKNDLFSQASNVLTSINGINKDNVVSLTSRFKTM 202
Query: 242 SHIMDASMEDLARCPGIGERKVKRLYDTF 270
S I+ A+++DL+ G+G+++V +Y F
Sbjct: 203 SDIITANIDDLSELSGMGDKRVLSIYRAF 231
>gi|449016198|dbj|BAM79600.1| similar to DNA excision repair protein ERCC-1 [Cyanidioschyzon
merolae strain 10D]
Length = 346
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQG-------------------QMDTD 211
L+ + + + +L+E R LE+ KV E K +D +QG Q
Sbjct: 219 LIQELTLMVAWNLDEAARILESYKVQEGKASDSLQGPLLGPRGSETRIEGSGDSVQRGDL 278
Query: 212 YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
R LT+ R+VN+ D L FGSL ++ AS E+LA PGIG K RL+ TFH
Sbjct: 279 LFHRAAAFLTNSRAVNRADAAILLRHFGSLRRVLTASAEELASVPGIGPLKSARLHKTFH 338
Query: 272 EPF 274
EP
Sbjct: 339 EPL 341
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADV-VCDYLVGQNSCALYLSLE 184
QS++ ILVS Q+GNPLLK+ R+V W F + D+L+G +CA +LS++
Sbjct: 109 QSKSHILVSLTQRGNPLLKHFRDVPWKFGEFRFADFLLGSYTCAFFLSMK 158
>gi|336465807|gb|EGO53972.1| hypothetical protein NEUTE1DRAFT_68281 [Neurospora tetrasperma FGSC
2508]
gi|350287360|gb|EGZ68607.1| DNA repair protein rad10, partial [Neurospora tetrasperma FGSC
2509]
Length = 300
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E RYLE K YE+ A I+GQ T Y ++ +T RSVNKTD
Sbjct: 171 LVNNVTVILCWSAQEAARYLELYKSYEHASASAIRGQQKTTYAEQMVEFVTVPRSVNKTD 230
Query: 231 VVTLGSTFGSLSHIMDASM-----EDLARCPGIGERKVKRLYDTFHEPFK 275
+ L STFGSL + ++ + E L G GE+KV+ F+
Sbjct: 231 AIALVSTFGSLRNAINVATEANGEERLGNVQGWGEKKVRSWRRAVEGSFR 280
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
ILVS RQKGNP+L I++ W ++D+ DY++G +CAL+LSL+
Sbjct: 81 ILVSPRQKGNPVLASIKSTAWEYSDIPADYVLGTTTCALFLSLK 124
>gi|429859474|gb|ELA34254.1| mating-type switching protein swi10 [Colletotrichum gloeosporioides
Nara gc5]
Length = 434
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ + I+GQ + Y +L +T RSVNK+D
Sbjct: 198 LVNNVTIILCWSAAEAARYLELYKSYEHANFNAIRGQQASSYAEKLVEFVTVPRSVNKSD 257
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L S GSL + ++A E + G G KV + EPF+
Sbjct: 258 AVALVSNLGSLKNAINADPEQVGIIAGWGAIKVNKWIKAVEEPFR 302
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVY 196
S +AI+VS RQ+GNP+L ++++ W ++D+ DY +G +CAL+L L ++ ++
Sbjct: 86 SSSAIMVSPRQRGNPVLASLKSMPWEYSDIAADYALGLTTCALFLRLVRYAFHVVFAAIF 145
Query: 197 ENKPA 201
P+
Sbjct: 146 LTTPS 150
>gi|302498320|ref|XP_003011158.1| hypothetical protein ARB_02680 [Arthroderma benhamiae CBS 112371]
gi|291174706|gb|EFE30518.1| hypothetical protein ARB_02680 [Arthroderma benhamiae CBS 112371]
Length = 349
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K E+ I+ + Y L +T+ RS+NK+D
Sbjct: 154 LINNLTIILCWSAPEAAHYLELFKSSEHAQPTAIRSRQAQSYKDSLVEFVTAPRSINKSD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK--RVVSSHP--PIPE 286
+L STFGSL ++A E ++ PG GERKVK+ + E FK R S P P PE
Sbjct: 214 AASLMSTFGSLRDAINAQPEQISAVPGWGERKVKQWTNAVQEEFKTDRAPRSAPREPQPE 273
Query: 287 T---------------PSQKDVERSSVNEVTEVEK 306
T P Q D RS+ ++ E ++
Sbjct: 274 TQSQPQLQSQLQSQPQPGQSDTRRSAADDTREADE 308
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L++IR W +AD+ DYLVG SCAL+LSL+
Sbjct: 63 SSILVSSRQKGNPILQHIRLTPWEYADIPADYLVGNTSCALFLSLK 108
>gi|322799807|gb|EFZ20999.1| hypothetical protein SINV_01434 [Solenopsis invicta]
Length = 189
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
++ + L + E+ G+ +ET K+YE+KP+D I + DT +L +ALT++RSVNKTD
Sbjct: 84 ILADMTLMLAWNAEDAGKIIETYKMYESKPSDDIMERSDTAPHQKLVNALTTIRSVNKTD 143
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
TL +TFG+L+ I+ A LA C G G K ++L+ HE F R
Sbjct: 144 ATTLLTTFGTLADIVRAQPNTLALCSGFGLHKAQKLHKVLHESFLR 189
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 147 QKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
Q+GNPLLK+I NV W ++D+V DY++G+ +CAL+LS+
Sbjct: 1 QRGNPLLKFITNVSWEYSDIVPDYVMGKTTCALFLSI 37
>gi|326469985|gb|EGD93994.1| mating-type switch/DNA repair protein Swi10/Rad10 [Trichophyton
tonsurans CBS 112818]
Length = 348
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K+ E+ I+ + Y L +T+ RS+NK+D
Sbjct: 154 LINNLTVILCWSASEAAHYLELFKLSEHAQPTAIRSRQAQSYKDSLVEFVTAPRSINKSD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL + ++A E ++ PG GERKVK+ + E F+
Sbjct: 214 AASLMSTFGSLRNAINAQPEQISAVPGWGERKVKQWTNAVQEEFR 258
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L++IR W +AD+ DY++G SCAL+LSL+
Sbjct: 63 SSILVSSRQKGNPILQHIRLTPWEYADIPADYVMGTTSCALFLSLK 108
>gi|430811830|emb|CCJ30686.1| unnamed protein product [Pneumocystis jirovecii]
Length = 235
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
++ + L S E GRYLET K E+ +IQG+ DY S+L TS+R + K D
Sbjct: 124 IINDATLILSWSFAEAGRYLETYKSLEHASFSIIQGKSHEDYYSKLVECFTSIRYITKDD 183
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ S F S+ ++A E++ G GE+K T +PF
Sbjct: 184 TYAMLSNFRSIKKAVNAEKEEILMIGGWGEQKANLFKKTVTQPF 227
>gi|260950013|ref|XP_002619303.1| hypothetical protein CLUG_00462 [Clavispora lusitaniae ATCC 42720]
gi|238846875|gb|EEQ36339.1| hypothetical protein CLUG_00462 [Clavispora lusitaniae ATCC 42720]
Length = 364
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ + S EE G Y+ +K +E + + +QG DY S + ALT+VR+VN+TDV
Sbjct: 258 ALVVAWSFEEAGTYVACLKQHEQTRSHVGSSLQGVRKGDYNSSVVGALTTVRAVNRTDVA 317
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L + S I+ S PGIGERK + L+D F EPF
Sbjct: 318 GLLAHCRSFKEIVLRSAVGGVSVPGIGERKQQTLHDAFTEPF 359
>gi|241948983|ref|XP_002417214.1| DNA excision-repair protein, putative [Candida dubliniensis CD36]
gi|223640552|emb|CAX44806.1| DNA excision-repair protein, putative [Candida dubliniensis CD36]
Length = 331
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 24/147 (16%)
Query: 148 KGNPLLKYIRNVRWAFADV---------VCDYLVGQN-SCALYLSLEECGRYLETIKVYE 197
+G+ +L+ V F D+ + D+ + + S L S EE G Y+ K +
Sbjct: 181 RGDDVLR----VLLVFVDIDSHQELLRKLSDFCIKHDLSLVLAWSYEEAGNYIALCKQLD 236
Query: 198 NKPAD---LIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMED--- 251
N P +I+G TDY S + A T ++SVNKTDV L + S+ I+ S ++
Sbjct: 237 NAPTKARKIIEGTKGTDYNSSVVEAFTGIKSVNKTDVSNLLANCKSVKEIILQSCQNDND 296
Query: 252 ----LARCPGIGERKVKRLYDTFHEPF 274
L+ PG+G RK+ L + F EPF
Sbjct: 297 DGIGLSSIPGLGTRKLANLKNVFSEPF 323
>gi|302657507|ref|XP_003020474.1| hypothetical protein TRV_05441 [Trichophyton verrucosum HKI 0517]
gi|291184311|gb|EFE39856.1| hypothetical protein TRV_05441 [Trichophyton verrucosum HKI 0517]
Length = 349
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L++IR W +AD+ DYLVG SCAL+LSL+
Sbjct: 63 SSILVSSRQKGNPILQHIRLTPWEYADIPADYLVGTTSCALFLSLK 108
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K E+ I+ + Y L +T+ RS+NK+D
Sbjct: 154 LINNLTIILCWSAPEAAHYLELFKSSEHAQPTAIRSRQAQSYKDSLVEFVTAPRSINKSD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GERKVK+ + E F+
Sbjct: 214 AASLMSTFGSLRDAINAQPEQISAVPGWGERKVKQWTNAVQEEFR 258
>gi|326484108|gb|EGE08118.1| mating-type switching protein swi10 [Trichophyton equinum CBS
127.97]
Length = 349
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K E+ I+ + Y L +T+ RS+NK+D
Sbjct: 154 LINNLTIILCWSASEAAHYLELFKSSEHAQPTAIRSRQAQSYKDSLVEFVTAPRSINKSD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL + ++A E ++ PG GERKVK+ + E F+
Sbjct: 214 AASLMSTFGSLRNAINAQPEQISAVPGWGERKVKQWTNAVQEEFR 258
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L++IR W +AD+ DY++G SCAL+LSL+
Sbjct: 63 SSILVSSRQKGNPILQHIRLTPWEYADIPADYVMGTTSCALFLSLK 108
>gi|330806281|ref|XP_003291100.1| hypothetical protein DICPUDRAFT_20909 [Dictyostelium purpureum]
gi|325078735|gb|EGC32370.1| hypothetical protein DICPUDRAFT_20909 [Dictyostelium purpureum]
Length = 210
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 182 SLEECGRYLETIKVYEN--KPADLIQGQ---MDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
S E G+Y+E+ K + + K D I+ + ++ ++ LTS++SVNKTD TL +
Sbjct: 110 SFLEAGKYIESYKSFSSSAKSVDFIKTRPQPVELGGKTKKEQVLTSIKSVNKTDANTLIN 169
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
F ++ + S E L +CPG G K + Y+T H+PFK
Sbjct: 170 NFKNMKAVFTCSKETLLKCPGFGPVKAQNFYNTIHQPFK 208
>gi|327301711|ref|XP_003235548.1| mating-type switching protein swi10 [Trichophyton rubrum CBS
118892]
gi|326462900|gb|EGD88353.1| mating-type switching protein swi10 [Trichophyton rubrum CBS
118892]
Length = 351
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K E+ I+ + Y L LT+ RS+NK+D
Sbjct: 154 LINNLTIILCWSAPEAAHYLELFKSSEHAQPTAIRSRQAQSYKDSLVEFLTTPRSINKSD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GERKVK+ + E F+
Sbjct: 214 AASLMSTFGSLRDAINAQPEQISAVPGWGERKVKQWTNAVQEEFR 258
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q ++ILVS RQKGNP+L++IR W +AD+ DY+VG SCAL+LSL+
Sbjct: 60 QGPSSILVSSRQKGNPILQHIRLTPWEYADIPADYVVGTTSCALFLSLK 108
>gi|315056865|ref|XP_003177807.1| mating-type switching protein swi10 [Arthroderma gypseum CBS
118893]
gi|311339653|gb|EFQ98855.1| mating-type switching protein swi10 [Arthroderma gypseum CBS
118893]
Length = 331
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L +IR W +AD+ DYLVG SCAL+LSL+
Sbjct: 57 SSILVSSRQKGNPILHHIRLTPWEYADIPADYLVGTTSCALFLSLK 102
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
L+ + L S E YLE K E+ I+ + Y L +T+ RS+NK+D
Sbjct: 148 LINNLTIILCWSAPEVAHYLELFKSSEHAQPTAIRSRQAQSYKDSLVEFVTAPRSINKSD 207
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GERKVK+ E F+
Sbjct: 208 AASLMSTFGSLRDAINAQPEQISAVPGWGERKVKQWTSAVQEDFR 252
>gi|344229923|gb|EGV61808.1| DNA repair protein rad10 [Candida tenuis ATCC 10573]
Length = 325
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Query: 176 SCALYLSLEECGRYLETIK---VYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ + S E+ G Y+ +K + K I+G +D+ S LT LTS+R++NKTDV+
Sbjct: 211 TLLIAWSFEQAGNYIAMLKDNELSRTKVNLTIRGAKQSDFKSNLTDTLTSIRAINKTDVI 270
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L + GS I++A D + G G+RK+ L TF +PF
Sbjct: 271 NLMTEIGSFKDIVEA---DNIKIHGFGDRKISNLKATFSQPF 309
>gi|66827727|ref|XP_647218.1| DNA excision repair protein 1 [Dictyostelium discoideum AX4]
gi|74859525|sp|Q55GG6.1|ERCC1_DICDI RecName: Full=DNA excision repair protein ERCC-1
gi|60475359|gb|EAL73294.1| DNA excision repair protein 1 [Dictyostelium discoideum AX4]
Length = 514
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 142 LVSQRQKGNPLL-----KYIRNVRWAFADVV----CDYLVGQ-NSCALYLSLE------- 184
L+ R KG L + + FAD+ C+ + + N A+ L
Sbjct: 271 LIQDRIKGLSTLMTNSDSFTLRILLVFADLSDSDNCEQFINELNLIAIKLQFTLIVCWSQ 330
Query: 185 -ECGRYLETIKVYENKPADLIQGQMDTDYL---SRLTHALTSVRSVNKTDVVTLGSTFGS 240
E +YLE K + N+ D I+ + L S+ LTS++SVNKTD TL F +
Sbjct: 331 IEAAKYLEAYKTFNNRAPDPIKARAQPIELGGKSKNEQVLTSIKSVNKTDATTLLKNFQT 390
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ I L++ PG G KV++ Y+T ++PF
Sbjct: 391 MQQIFTCQKTTLSKLPGFGPVKVQKFYNTINQPF 424
>gi|50551627|ref|XP_503288.1| YALI0D25762p [Yarrowia lipolytica]
gi|49649156|emb|CAG81492.1| YALI0D25762p [Yarrowia lipolytica CLIB122]
Length = 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 104/248 (41%), Gaps = 70/248 (28%)
Query: 97 PPPPPPANPPTTSQNPTLS---QGGEQNVGTASASASS--SQSIQSRN----AILVSQRQ 147
PP P P N + +L Q +N+ A A+A + + + SR AILV++ Q
Sbjct: 116 PPAPQPVNTRQNNNEISLEASIQQARENIKRAEAAAVAEPTAPVVSRQRRIPAILVNKNQ 175
Query: 148 KGNPLLKYIRNVRWAF--ADVVCDYLVGQNSCALYLSL-------EECGRYLET------ 192
+GN +L YI++V W + D+V DY+ G SC L+LS+ E R +
Sbjct: 176 RGNKVLDYIKDVPWEYGAGDMVADYVTGSTSCVLFLSIKYHSIKPEYIYRKIAKLQKQQF 235
Query: 193 -IKVY------ENKPA---DLIQGQMDTD--------------YLSRL------------ 216
+KV EN A +L + M D Y+S+L
Sbjct: 236 DLKVLLVMIDKENHEAAIRELTRASMRHDLAILVAWSNEDCGNYISKLKSLETATVKLIE 295
Query: 217 -------THALTSVRS---VNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRL 266
T L V S +NK+D + L +T+ SL + + E ++ G G KVKR
Sbjct: 296 GSKSKDYTSRLADVLSNVKLNKSDALNLSTTYKSLKNAILDDSERISEINGFGPTKVKRW 355
Query: 267 YDTFHEPF 274
T +PF
Sbjct: 356 NQTMRDPF 363
>gi|156030615|ref|XP_001584634.1| hypothetical protein SS1G_14403 [Sclerotinia sclerotiorum 1980]
gi|154700794|gb|EDO00533.1| hypothetical protein SS1G_14403 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 408
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K YE+ I+G Y ++ +T R++NKTD
Sbjct: 166 LVNNVTVMLCWSAPEAARYLELYKSYEHANPSAIKGVESKSYGDKMVDFITVPRNINKTD 225
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
V L FGS+ + ++A E++A G GE+KV++ EPF+
Sbjct: 226 AVALVDAFGSIKNAINARPEEIAVVNGWGEKKVRKWCGIVDEPFR 270
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 13/84 (15%)
Query: 101 PPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVR 160
PPAN S P + Q Q A AS SS +IQ VS RQKGNP+L +++
Sbjct: 50 PPAN---ASSGPKVVQPTPQ----AIASRSSGSTIQ------VSLRQKGNPILTNLKSFP 96
Query: 161 WAFADVVCDYLVGQNSCALYLSLE 184
W ++D+ DY++G +CAL+LSL+
Sbjct: 97 WEYSDIPADYVLGATTCALFLSLK 120
>gi|401880859|gb|EJT45170.1| hypothetical protein A1Q1_06487 [Trichosporon asahii var. asahii
CBS 2479]
Length = 286
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 196 YENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARC 255
YE+K AD I+ ++ Y ++L H LTS R VNK++V L + FGS S I S L
Sbjct: 122 YEHKSADPIKERVHQTYHNQLDHVLTSGRKVNKSNVEALAAQFGSFSAIATQSNHALGTV 181
Query: 256 PGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPS 289
G+G +KV L D F++PF V S P + P+
Sbjct: 182 KGLGPKKVVSLLDAFNKPF--VASGKPHALDVPA 213
>gi|303316412|ref|XP_003068208.1| DNA repair protein rad10 containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107889|gb|EER26063.1| DNA repair protein rad10 containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037954|gb|EFW19890.1| mating-type switching protein swi10 [Coccidioides posadasii str.
Silveira]
Length = 356
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+R+AILVS RQKGNP+L ++R + W +AD+ DY++G +CAL+LSL+
Sbjct: 54 ARSAILVSARQKGNPILNHVRLLPWEYADIPADYVLGATTCALFLSLK 101
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E G YLE K EN P I+ Q Y L +T+ + +NK+D
Sbjct: 147 VVNNLTLILCWSAAEAGHYLELFKSSENAPPTAIRSQQPHSYKDSLVEFITTPKRINKSD 206
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK-RVVSS 280
+L STFGSL ++A E + PG GE+KV + + E F+ R V++
Sbjct: 207 AASLISTFGSLRAAINAQPEQINSVPGWGEKKVSQWTNAVKEDFRTRAVTT 257
>gi|406697248|gb|EKD00513.1| hypothetical protein A1Q2_05178 [Trichosporon asahii var. asahii
CBS 8904]
Length = 311
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 196 YENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARC 255
YE+K AD I+ ++ Y ++L H LTS R VNK++V L + FGS S I S L
Sbjct: 147 YEHKSADPIKERVHQTYHNQLDHVLTSGRKVNKSNVEALAAQFGSFSAIATQSNHALGTV 206
Query: 256 PGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPS 289
G+G +KV L D F++PF V S P + P+
Sbjct: 207 KGLGPKKVVSLLDAFNKPF--VASGKPHALDVPA 238
>gi|119188301|ref|XP_001244757.1| hypothetical protein CIMG_04198 [Coccidioides immitis RS]
gi|392871469|gb|EAS33386.2| DNA repair protein rad10 [Coccidioides immitis RS]
Length = 355
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 137 SRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+R+AILVS RQKGNP+L ++R + W +AD+ DY++G +CAL+LSL+
Sbjct: 53 ARSAILVSARQKGNPILNHVRLLPWEYADIPADYVLGATTCALFLSLK 100
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E G YLE K EN P I+ Q Y L +T+ + +NK+D
Sbjct: 146 VVNNLTLILCWSAAEAGHYLELFKSSENAPPTAIRSQQPHSYKDSLVEFITTPKRINKSD 205
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK-RVVSS 280
+L STFGSL ++A E + PG GE+KV + + E F+ R V++
Sbjct: 206 AASLISTFGSLRAAINAQPEQINSVPGWGEKKVSQWTNAVKEDFRTRAVTT 256
>gi|296827780|ref|XP_002851223.1| mating-type switching protein swi10 [Arthroderma otae CBS 113480]
gi|238838777|gb|EEQ28439.1| mating-type switching protein swi10 [Arthroderma otae CBS 113480]
Length = 323
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILVS RQKGNP+L +IR W +AD+ DYLVG SCAL+LSL+
Sbjct: 54 SSILVSPRQKGNPILHHIRLTPWEYADIPADYLVGTTSCALFLSLK 99
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E YLE K E+ I+ + Y L +T+ RS+NK+D
Sbjct: 145 LVNNLTIILCWSAPEAAHYLELFKSSEHAQPTAIKSKQAQSYKDSLVEFVTAPRSINKSD 204
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFG+L ++A E ++ PG GERKVK+ + E F+
Sbjct: 205 AASLMSTFGTLRDAVNAPPEQISAVPGWGERKVKQWTNAVQEDFR 249
>gi|290973391|ref|XP_002669432.1| predicted protein [Naegleria gruberi]
gi|284082979|gb|EFC36688.1| predicted protein [Naegleria gruberi]
Length = 597
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 81/205 (39%), Gaps = 64/205 (31%)
Query: 123 GTASASASSSQSIQSRNA------ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNS 176
G +S S+ Q Q N VS+ L++ R WA V+C +
Sbjct: 321 GDSSIYLSNHQDSQGENGGTFKAPTYVSETALDEALIEVTRISMWADWTVICGF------ 374
Query: 177 CALYLSLEECGRYLETIKVYENKPADLIQG--------QMDTDYL--------------- 213
S EEC YLETI+ E K + LIQG Q T+ L
Sbjct: 375 -----SDEECALYLETIRACETKGSSLIQGPNQSLASLQSSTNSLVTSTGGQGKRKGNRR 429
Query: 214 ----------------SRLTH--------ALTSVRSVNKTDVVTLGSTFGSLSHIMDASM 249
+L+H A T ++NK D +TL + FGSL ++ +
Sbjct: 430 WSRESSSNSNSKPVEVEKLSHTEEVHQLFAATLKNTLNKRDHITLLNHFGSLKEVIQTTS 489
Query: 250 EDLARCPGIGERKVKRLYDTFHEPF 274
++L PG G++KVK+L + F PF
Sbjct: 490 DELNDLPGFGKKKVKKLINLFQTPF 514
>gi|225683697|gb|EEH21981.1| mating-type switching protein swi10 [Paracoccidioides brasiliensis
Pb03]
Length = 358
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E G YLE K E+ I+ Q Y L +T+ R +NK+D
Sbjct: 144 LVNNLTLILCWSAVEAGHYLELFKSCEHAQPTAIRTQQSQSYDESLVEFITTPRIINKSD 203
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GE+KV++ +D F+
Sbjct: 204 AASLISTFGSLEAAINAQPEQISAVPGWGEKKVQQWHDAVTSEFR 248
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 43/55 (78%), Gaps = 3/55 (5%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q++ SR+ AILVS RQ+GNP+L ++++V W +AD+ DY+VG ++C L+LSL+
Sbjct: 44 QALPSRSGPAAILVSARQRGNPILNHVKHVPWEYADIPADYVVGNSTCILFLSLK 98
>gi|226293058|gb|EEH48478.1| mating-type switching protein swi10 [Paracoccidioides brasiliensis
Pb18]
Length = 358
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E G YLE K E+ I+ Q Y L +T+ R +NK+D
Sbjct: 144 LVNNLTLILCWSAVEAGHYLELFKSCEHAQPTAIRTQQSQSYNESLVEFITTPRIINKSD 203
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GE+KV++ +D F+
Sbjct: 204 AASLISTFGSLEAAINAQPEQISAVPGWGEKKVQQWHDAVTSEFR 248
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 43/55 (78%), Gaps = 3/55 (5%)
Query: 133 QSIQSRN---AILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Q++ SR+ AILVS RQ+GNP+L ++++V W +AD+ DY+VG ++C L+LSL+
Sbjct: 44 QALPSRSGPAAILVSARQRGNPILNHVKHVPWEYADIPADYVVGNSTCILFLSLK 98
>gi|212528570|ref|XP_002144442.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Talaromyces marneffei ATCC 18224]
gi|210073840|gb|EEA27927.1| mating-type switch/DNA repair protein Swi10/Rad10, putative
[Talaromyces marneffei ATCC 18224]
Length = 323
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+AILVS RQKGNP+L +++ V W +AD+ DY++G +CAL+LSL+
Sbjct: 37 SAILVSSRQKGNPILNHVKLVPWEYADIPADYVLGATTCALFLSLK 82
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
+V + L S E YLE K EN I+ Q Y + +T+ RSVNK+D
Sbjct: 128 IVNNVTLILCWSAPEAAHYLELYKSSENAQPTAIRSQQAQSYRESVIEFITAPRSVNKSD 187
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+L STFGSL ++A E ++ PG GE+KV++ E F+
Sbjct: 188 AASLMSTFGSLQAAVNAQPEQISAVPGWGEKKVRQWSSAVREDFR 232
>gi|336266030|ref|XP_003347785.1| hypothetical protein SMAC_03883 [Sordaria macrospora k-hell]
gi|380091320|emb|CCC11177.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 416
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S +E RYLE K YE+ A I+GQ Y ++ +T RSVNKTD
Sbjct: 183 LVNNVTVILCWSAQEAARYLELYKSYEHASAAAIRGQTKRTYAEQMVEFVTVPRSVNKTD 242
Query: 231 VVTLGSTFGSLSHIMDASMED---------LARCPGIGERKVKRLYDTFHEPFKRVVSSH 281
+ L STFGSL ++A+ L + G GE+KVK ++R V
Sbjct: 243 AIALVSTFGSLRSAINATTGTGTGAEGEERLGQVQGWGEKKVK--------GWRRAVEGG 294
Query: 282 PPIPETPSQKDVERSSVNE---VTEVEKDTEDVNKRRKKETESTVKS 325
+ + +K V S + +++V ++ DV R +ES +S
Sbjct: 295 FRVGKAKGRKAVTDDSGGKGKGMSKVLEEAVDVGLGRVVGSESGTQS 341
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
ILVS RQKGNP+L I++ W ++D+ DY++G +C L+LSL+
Sbjct: 94 ILVSPRQKGNPVLASIKSTAWEYSDIPSDYVLGSTTCCLFLSLK 137
>gi|403331490|gb|EJY64695.1| Excision repair enzyme ERCC-1 [Oxytricha trifallax]
Length = 338
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTD---YLSRLTHALTSVRSVNKTDVVTLGSTF 238
S EE +Y++T K YENK +++G+ +L + T L S+R VNKTD L F
Sbjct: 182 SFEEAAQYIQTFKSYENKTQTMLEGKYQNQGNTHLEQATDVLGSIRRVNKTDAKNLLCNF 241
Query: 239 GSLSHIMDA-SMEDLARCPGIGERKVKRLYDTFHEPF 274
GS+ ++ A S E+ GIG+ K+ + F F
Sbjct: 242 GSIEQVILAPSYEEFLNMDGIGQSKIDAITQCFRGKF 278
>gi|255070197|ref|XP_002507180.1| predicted protein [Micromonas sp. RCC299]
gi|226522455|gb|ACO68438.1| predicted protein [Micromonas sp. RCC299]
Length = 221
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 173 GQNSCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
G CAL SL+E RY+E E + D DY+++L AL+ V++ D
Sbjct: 113 GLGDCALVCAWSLDEAARYIEFFHGCERFIGSSKESYND-DYMTQLHEALSCSHGVHRVD 171
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH 281
TL + FG+ + I+ A+ + L PG+G KV RL +TFH P + ++SH
Sbjct: 172 AATLATRFGTFACILRATHKSLLSSPGLGVTKVVRLSETFHTPLQ--LASH 220
>gi|405957268|gb|EKC23492.1| DNA excision repair protein ERCC-1 [Crassostrea gigas]
Length = 457
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 38/45 (84%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+++V+ RQ+GNP+LK+IR++ + F D++ DY +G+ +CAL+LSL
Sbjct: 166 NSLIVNSRQRGNPILKFIRSIPYEFGDIIPDYEMGKTACALFLSL 210
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 167 VCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRS 225
+C ++ + L S EE GRYLET KVYE+KP D I + + DY+S++T LTSVRS
Sbjct: 255 IC--ILADCTLILAFSAEEAGRYLETYKVYEHKPPDAIMEKTEKDYMSKVTECLTSVRS 311
>gi|320583383|gb|EFW97596.1| DNA excision-repair protein, putative [Ogataea parapolymorpha DL-1]
Length = 298
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 9/113 (7%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYE-NKPADLIQGQM-------DTDYLSRLTHALTS 222
L + + L S ++C YL +K E N LI+G D DY R+ +TS
Sbjct: 183 LFNELNLVLAWSFQQCADYLTFLKQCELNVGNQLIKGAAKTDSIANDADYYQRIVDMMTS 242
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASME-DLARCPGIGERKVKRLYDTFHEPF 274
+RS+NKTD + L S F S ++ + + E +L G+G K++RL ++PF
Sbjct: 243 IRSINKTDSIKLISRFKSFKNLCEEANEYNLEEISGMGHNKIERLLKVINDPF 295
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 97 PPPPPPANPPTTSQNPT-------LSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKG 149
P P N + PT + +G Q ++ ++ Q+ AI ++Q Q G
Sbjct: 37 PSLRPAQNEASVRVRPTRDSSPQIIIRGSNQEDKRVDSAKYTTLKKQTFGAIQINQNQTG 96
Query: 150 NPLLKYIRNVRWAFADVV--CDYLVGQNSCALYLSL 183
NPLL+ ++ V + F V DYL+ + ++LSL
Sbjct: 97 NPLLQSLKQVAYEFNAKVKDVDYLINSHCVVVFLSL 132
>gi|70952535|ref|XP_745429.1| ERCC1 nucleotide excision repair protein [Plasmodium chabaudi
chabaudi]
gi|56525749|emb|CAH76930.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium
chabaudi chabaudi]
Length = 214
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
+EC R +E K++E + + + ++ ++ L +R +N TD T+ + + S
Sbjct: 123 DECARVIEDFKIFEKNISYIKNNKKFSNNEEKIHELLKKIRCINSTDCFTITNKLKNFSS 182
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I+ A EDL C G+G +K++ L TF +PF
Sbjct: 183 IVKAKKEDLINCSGLGNKKIQALLSTFSDPF 213
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 34/44 (77%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+++S RQK NP+LK I V++ F ++V D+L+G+N+ L++S++
Sbjct: 21 LIISPRQKLNPVLKKINRVQYKFNEIVPDFLIGKNNACLFISMK 64
>gi|254656355|gb|ACT76272.1| excision repair cross-complementing rodent repair deficiency
complementation group 1, partial [Sebastiscus
marmoratus]
Length = 118
Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 146 RQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
RQ+GNP+LK++R+V W F DVV DY++GQ +CAL+LSL
Sbjct: 2 RQRGNPILKFVRSVPWEFGDVVPDYVLGQTTCALFLSL 39
>gi|407861885|gb|EKG07726.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 269
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADL-IQGQMDTDYLSRLTHALTSV-RSVNKTDVV 232
CA+ L EEC YLE + V+ D + + ++ + L A T + + + DVV
Sbjct: 113 CAVMLCWTEEECASYLEGLAVFSAGSVDYRLSNKKESAPIPVLIEAFTQTPQLMTRNDVV 172
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---KRVVSSHPPIPETPS 289
+GS++ ++ AS+EDLA PG G ++ RL+ H F +R+VS
Sbjct: 173 RAAHRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLHAGFHASRRLVSDLLTESNELC 232
Query: 290 QKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
D RS+ + V+ EK + +N+ R +E E
Sbjct: 233 GVDEMRSAPDRVSAREKMLQVLNQLRCREME 263
>gi|344305084|gb|EGW35316.1| hypothetical protein SPAPADRAFT_58541 [Spathaspora passalidarum
NRRL Y-27907]
Length = 342
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLI---QGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ L S EE G Y+ K +N P+ I +G DY S + A T +RSVNKTDV
Sbjct: 227 TMVLAWSFEEAGNYIAMAKQLDNAPSKTISSIKGIRGVDYNSSVVEAFTGIRSVNKTDVS 286
Query: 233 TLGSTFGSLSHI-MDASMED----LARCPGIGERKVKRLYDTFHEPF 274
L + S+ I +++ ED LA G+G K++ L F EPF
Sbjct: 287 NLLANCKSVKQIVLESCKEDSENMLADIGGLGSTKLRNLRQVFSEPF 333
>gi|255731205|ref|XP_002550527.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132484|gb|EER32042.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 336
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
+ L S EE G Y+ T K ++ P I+G TDY + ++ ALT ++SVNK+DV
Sbjct: 220 TLVLAWSQEEAGNYIATAKSIDDAPTKAKKSIEGNKATDYNTCVSEALTGIKSVNKSDVA 279
Query: 233 TLGSTFGSLSH-IMDASMED------LARCPGIGERKVKRLYDTFHEPF 274
L S+ ++++ ED LA G+G K++ L TF EPF
Sbjct: 280 NLLGNCKSIKQVVLESCREDNGDGFGLANIHGLGATKLRNLKQTFSEPF 328
>gi|448101345|ref|XP_004199538.1| Piso0_002075 [Millerozyma farinosa CBS 7064]
gi|359380960|emb|CCE81419.1| Piso0_002075 [Millerozyma farinosa CBS 7064]
Length = 330
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 176 SCALYLSLEECGRYLETIKVYE---NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
S L S EE G Y+ K YE +K +I+G Y + +T ALT+V ++NKTD V
Sbjct: 215 SLVLSWSFEEAGNYIVFAKKYELSASKVDSVIRGIKGQSYQACVTEALTTVPAINKTDTV 274
Query: 233 TLGSTFGSLSHIM------DASMEDLARCPGIGERKVKRLYDTFHEPF 274
L + S+ +I+ D +E L GIG RK++ L F EPF
Sbjct: 275 KLLANCHSVKNIVVQSSSRDEEVEKLTNIQGIGMRKIESLRKVFTEPF 322
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 134 SIQSRNAILVSQRQKGNPLL--KYIRNVRWAF-ADVVCDYLVGQNSCALYLSLE 184
S+Q+ + ILVS+ QKGNPLL +++ W++ ++ DY + L+LSL+
Sbjct: 102 SVQTFSNILVSKTQKGNPLLTNSLMKSTSWSYDGSILSDYYINPTLQILFLSLK 155
>gi|354543999|emb|CCE40721.1| hypothetical protein CPAR2_107560 [Candida parapsilosis]
Length = 366
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTS 222
+ D+ + + S L S EE G Y+ K ++N P I+G DY S + A T
Sbjct: 243 LSDFCIKHDLSLVLAWSFEEAGNYIALGKHFDNAPHSAKQSIRGFKGADYNSNVVEAFTG 302
Query: 223 VRSVNKTDVVTLGSTFGSLSH-IMDASMED---LARCPGIGERKVKRLYDTFHEPF 274
++SVNKTDV L + + S+ ++ S E+ L PG+G K + L F EPF
Sbjct: 303 IKSVNKTDVSNLLANYKSVREMVLQCSKENNEMLGNIPGMGAVKRRNLKQVFSEPF 358
>gi|190348582|gb|EDK41056.2| hypothetical protein PGUG_05154 [Meyerozyma guilliermondii ATCC
6260]
Length = 319
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTS 222
+ D + Q+ S L S EE G Y+ K YE ++ I+G DY + + LTS
Sbjct: 194 LADLCIKQDLSLVLAWSFEEAGNYIAYAKQYETSASNATSAIRGIKSQDYRAAVVETLTS 253
Query: 223 VRSVNKTDVVTLGSTFGSLSHIM--DASMEDLARCPGIGERKVKRLYDTFHEPF 274
V +VNKTDVV L + F S +++ ++ L G+G RKV+ + F EPF
Sbjct: 254 VPAVNKTDVVNLLANFHSFHNVVKEGSNGTKLGDISGMGSRKVENMKRVFTEPF 307
>gi|124800729|ref|XP_001349545.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium
falciparum 3D7]
gi|3845112|gb|AAC71822.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium
falciparum 3D7]
Length = 242
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTS-VRSVNKTDVVTLGST 237
L S EEC R +E ++YE K + +I+ ++ + H L +R ++ TD +TL +
Sbjct: 145 LCWSNEECARVIEDFRIYEKKISYIIKKKISSSNQEEKIHELLKKIRCIHTTDCITLTTK 204
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
F + +I+ A EDL C G+G +K++ L TF++PF
Sbjct: 205 FKNFKNIIQAKKEDLISCSGLGIKKIQALMATFNDPF 241
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 68/119 (57%), Gaps = 17/119 (14%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQK NP++K I+ VR+ F +++ D+LVG+N+ L++S++ Y
Sbjct: 48 LIISLRQKLNPVIKKIKRVRYKFNNIIPDFLVGKNNACLFISMK-----------YHRLR 96
Query: 201 ADLIQGQMDT---DYLSRLTHALTSVRSVNKT--DVVTLGSTFGSLSHIMDASMEDLAR 254
++ ++ +++T Y +R+ L + ++ + ++ L +F +++ I+ S E+ AR
Sbjct: 97 SNYLKARIETLSNKYNNRILLCLVDMENIENSLGEINQLSFSF-NMTLILCWSNEECAR 154
>gi|448518971|ref|XP_003868015.1| Rad10 protein [Candida orthopsilosis Co 90-125]
gi|380352354|emb|CCG22580.1| Rad10 protein [Candida orthopsilosis]
Length = 354
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTS 222
+ D+ + + S L S EE G Y+ K +N P I+G DY S + A T
Sbjct: 231 LSDFCIKHDLSLVLAWSFEEAGNYIALGKHLDNAPHQAKQSIRGFKGADYSSNVVEAFTG 290
Query: 223 VRSVNKTDVVTLGSTFGSLSH-IMDASMED---LARCPGIGERKVKRLYDTFHEPF 274
++SVNKTDV L + + S+ ++ S D L PG+G K + L F EPF
Sbjct: 291 IKSVNKTDVSNLLANYKSVKEMVLQCSKHDNEMLGNIPGMGAVKRRNLKQVFSEPF 346
>gi|71666978|ref|XP_820443.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70885787|gb|EAN98592.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 269
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADL-IQGQMDTDYLSRLTHALTSV-RSVNKTDVV 232
CA+ L EEC YLE + V+ D + + ++ + L A T + + + DVV
Sbjct: 113 CAVMLCWTEEECASYLEGLAVFSVGSVDYRLSNKKESAPIPVLIEAFTQTPQLMTRNDVV 172
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---KRVVSSHPPIPETPS 289
+GS++ ++ AS+EDLA PG G ++ RL+ H F +R+VS
Sbjct: 173 RAAHRYGSVAELLTASLEDLASLPGFGPKRAGRLHTVLHAGFHASRRLVSDLLTESNELC 232
Query: 290 QKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
D RS+ + V+ EK + +N+ R +E E
Sbjct: 233 GVDEMRSAPDRVSAREKMLQVLNQLRCREME 263
>gi|440639420|gb|ELR09339.1| hypothetical protein GMDG_03905 [Geomyces destructans 20631-21]
Length = 247
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 13/91 (14%)
Query: 104 NPPTTSQNPTLSQGGEQNVGTASASASSSQSIQ----------SRNAILVSQRQKGNPLL 153
NPP T++ ++Q + A+ + SS++ +Q S +AI VS RQKGNP+L
Sbjct: 23 NPPPTTR---ITQPTPHRLDPATTTPSSTKIVQPTPQALPLRSSGSAIYVSHRQKGNPML 79
Query: 154 KYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
Y+R W + D DY++G +CAL+LSL+
Sbjct: 80 AYLRAQPWEWRDTPADYVLGATTCALFLSLK 110
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%)
Query: 171 LVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTD 230
LV + L S E RYLE K +E+ A I G Y + +T R VN+TD
Sbjct: 156 LVNNVTIILCWSAAEGARYLELYKGFEHASAAGIMGVQAKGYAEQFVEFVTVPRGVNRTD 215
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERK 262
V + FGS+ ++A E++A G G R+
Sbjct: 216 AVGIVGAFGSVRAAVNARPEEVAVLSGWGRRR 247
>gi|146414457|ref|XP_001483199.1| hypothetical protein PGUG_05154 [Meyerozyma guilliermondii ATCC
6260]
Length = 319
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTS 222
+ D + Q+ S L S EE G Y+ K YE ++ I+G DY + + LTS
Sbjct: 194 LADLCIKQDLSLVLAWSFEEAGNYIAYAKQYETSASNATSAIRGIKSQDYRAAVVETLTS 253
Query: 223 VRSVNKTDVVTLGSTFGSLSHIM--DASMEDLARCPGIGERKVKRLYDTFHEPF 274
V +VNKTDVV L + F S +++ ++ L G+G RKV+ + F EPF
Sbjct: 254 VPAVNKTDVVNLLANFHSFHNVVKEGSNGTKLGDILGMGSRKVENMKRVFTEPF 307
>gi|68474733|ref|XP_718574.1| hypothetical protein CaO19.10006 [Candida albicans SC5314]
gi|68474898|ref|XP_718490.1| hypothetical protein CaO19.2469 [Candida albicans SC5314]
gi|46440258|gb|EAK99566.1| hypothetical protein CaO19.2469 [Candida albicans SC5314]
gi|46440348|gb|EAK99655.1| hypothetical protein CaO19.10006 [Candida albicans SC5314]
gi|238878970|gb|EEQ42608.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 338
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKPAD---LIQGQMDTDYLSRLTHALTS 222
+ D+ + + S L S EE Y+ K + P +I+G +DY S + A T
Sbjct: 212 LSDFCIKHDLSLVLAWSYEEAANYIALCKQLDKAPLKGRKIIEGTKGSDYNSSVVKAFTG 271
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASMED-------LARCPGIGERKVKRLYDTFHEPF 274
++SVNKTDV L + S+ I+ S ++ LA PG+G +K++ L F EPF
Sbjct: 272 IKSVNKTDVSNLLANCKSVKEIVLQSCQNDNDDGIGLASIPGLGAKKLENLKKVFSEPF 330
>gi|448097500|ref|XP_004198689.1| Piso0_002075 [Millerozyma farinosa CBS 7064]
gi|359380111|emb|CCE82352.1| Piso0_002075 [Millerozyma farinosa CBS 7064]
Length = 330
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 176 SCALYLSLEECGRYLETIKVYE---NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
S L S EE G Y+ K YE +K +I+G Y + +T ALT+V ++NKTD V
Sbjct: 215 SLVLSWSFEEAGNYIVFAKKYELSASKVDSVIRGIKGQSYQACVTEALTTVPAINKTDTV 274
Query: 233 TLGSTFGSLSHIM------DASMEDLARCPGIGERKVKRLYDTFHEPF 274
L + S+ +I+ D E L GIG RK++ L F EPF
Sbjct: 275 KLLANCHSVKNIVVRSSSRDEEAEKLTNIQGIGMRKIESLRKVFTEPF 322
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 134 SIQSRNAILVSQRQKGNPLL--KYIRNVRWAF-ADVVCDYLVGQNSCALYLSLE 184
S+Q+ + ILVS+ QKGNPLL +++ W++ ++ DY + L+LSL+
Sbjct: 102 SVQTFSNILVSKTQKGNPLLTNSLMKSTSWSYDGSILSDYYINPTLQILFLSLK 155
>gi|313231072|emb|CBY19070.1| unnamed protein product [Oikopleura dioica]
gi|313241149|emb|CBY33443.1| unnamed protein product [Oikopleura dioica]
Length = 229
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 181 LSLEECGRYLETIKVYENKPADLIQGQMD-TDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+L+E ++ET K Y NK + ++G+ D TD R+T LT N +D +L G
Sbjct: 135 FNLQEAASHIETFKRYANKGPETLKGKFDETD---RVTKLLTIASGFNSSDSASLLRQTG 191
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
SL+ I + ++A GIGE+K L + F+ PFK++
Sbjct: 192 SLAQIAQTNKAEIACISGIGEKKAAALLELFNTPFKKI 229
>gi|68073927|ref|XP_678878.1| ERCC1 nucleotide excision repair protein [Plasmodium berghei strain
ANKA]
gi|56499483|emb|CAH94981.1| ERCC1 nucleotide excision repair protein, putative [Plasmodium
berghei]
Length = 214
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
+EC R +E K++E + + + + ++ L +R +N +D T+ + + S+
Sbjct: 123 DECARIIEDFKIFEKNISYIKNNKKFSSNQEKIHELLKKIRCINSSDCFTITNKLKNFSN 182
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I+ A ED C G+G +K++ L TF +PF
Sbjct: 183 IVKAKKEDFINCSGLGNKKIQSLLSTFSDPF 213
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
+++S RQK NP+LK I ++ F ++V D+L+G+N+ L++S+
Sbjct: 21 LIISPRQKLNPVLKKINRAQYKFNEIVPDFLIGKNNACLFISM 63
>gi|294656298|ref|XP_458560.2| DEHA2D02134p [Debaryomyces hansenii CBS767]
gi|199431361|emb|CAG86692.2| DEHA2D02134p [Debaryomyces hansenii CBS767]
Length = 340
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 176 SCALYLSLEECGRYLETIKVYE---NKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
S L S EE G Y+ K YE +K I+G +Y + + LT +RS+NKTD V
Sbjct: 227 SLVLAWSFEEAGNYIGFCKQYELSSSKVKSAIKGTKSLEYQACVIDTLTGIRSINKTDSV 286
Query: 233 TLGSTFGSLSHIMDASM---ED--LARCPGIGERKVKRLYDTFHEPF 274
L + GS+ +I+ S ED L G+G RK+ + F EPF
Sbjct: 287 KLLANCGSVKNIVLQSCKSNEDGGLNNIQGLGSRKLSNMRSVFSEPF 333
>gi|209878282|ref|XP_002140582.1| DNA repair protein rad10 [Cryptosporidium muris RN66]
gi|209556188|gb|EEA06233.1| DNA repair protein rad10, putative [Cryptosporidium muris RN66]
Length = 241
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
+E LE +K +EN P D I+G + +D R AL+S+ +N++D L +F S+S+
Sbjct: 148 QEAAAVLEAMKSFENTPPDSIRGILSSDINERSIEALSSLPRINRSDACKLLKSFSSMSN 207
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
I++A +L GIG K K L D F F
Sbjct: 208 IINARECELVNLSGIGLIKAKVLSDVFSSSF 238
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+ I+ S RQKGNPL++YI+N + F+ +V D+LVG+ +++S++
Sbjct: 41 DIIVASNRQKGNPLIQYIKNTIYEFSSLVPDFLVGKYDAVIFISIK 86
>gi|82753394|ref|XP_727660.1| DNA repair protein Rad10 [Plasmodium yoelii yoelii 17XNL]
gi|23483611|gb|EAA19225.1| DNA repair protein rad10, putative [Plasmodium yoelii yoelii]
Length = 215
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHI 244
EC R +E K++E + + + + ++ L +R +N +D T+ + F + S I
Sbjct: 125 ECARIIEDYKIFEKNFSYIKNNKNFSTNQEKIHELLKKIRCINSSDCFTITNKFKNFSAI 184
Query: 245 MDASMEDLARCPGIGERKVKRLYDTFHEPF 274
A ED C G+G +K++ L TF +PF
Sbjct: 185 AKAKKEDFVNCSGLGNKKIQSLLSTFSDPF 214
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 34/44 (77%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+++S RQK NP+LK I V++ F ++V D+L+G+N+ L++S++
Sbjct: 22 LIISPRQKLNPVLKKINRVQYKFNEIVPDFLIGKNNACLFISMK 65
>gi|71418519|ref|XP_810877.1| DNA repair protein [Trypanosoma cruzi strain CL Brener]
gi|70875476|gb|EAN89026.1| DNA repair protein, putative [Trypanosoma cruzi]
Length = 269
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 11/153 (7%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADL-IQGQMDTDYLSRLTHALTSV-RSVNKTDVV 232
CA+ L EEC YLE + V+ D + + ++ + L A T + + + DVV
Sbjct: 113 CAVMLCWTEEECASYLEGLAVFSVGSVDYRLSNKKESAPIPVLIEAFTQTPQLMTRNDVV 172
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---KRVVSSHPPIPETPS 289
+GS++ ++ AS+EDL PG G ++ RL++ H F +R++S + E+
Sbjct: 173 RAAHRYGSVAELLTASLEDLTSLPGFGPKRAGRLHNVLHAGFHASRRLLSD--LLTESNE 230
Query: 290 QKDVE--RSSVNEVTEVEKDTEDVNKRRKKETE 320
+ V+ RS+ + V+ EK + +N+ R +E E
Sbjct: 231 LRGVDEMRSAPDRVSAREKMLQVLNQLRCREME 263
>gi|407390467|gb|EKF26024.1| DNA repair protein, putative [Trypanosoma cruzi marinkellei]
Length = 303
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADL-IQGQMDTDYLSRLTHALTSV-RSVNKTDVV 232
CA+ L EEC YLE + V+ D + + ++ + L A T + + + DVV
Sbjct: 147 CAVMLCWTEEECASYLEGLAVFSVGSVDYRVSNKKESAPMPVLIEAFTQTPQLMTRNDVV 206
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF---KRVVSSHPPIPETPS 289
+GS++ ++ AS EDLA PG G ++ RL+ H F +R+VS P
Sbjct: 207 RAAHRYGSVAELLTASFEDLASLPGFGPKRAGRLHTVLHAGFHASRRLVSDLLAESNEPH 266
Query: 290 QKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
D S+ + V EK + + R +E E
Sbjct: 267 GVDEMHSAPDRVLAREKMLHVLTQLRCREME 297
>gi|254567946|ref|XP_002491083.1| Single-stranded DNA endonuclease (with Rad1p), cleaves
single-stranded DNA during nucleotide excisio
[Komagataella pastoris GS115]
gi|238030880|emb|CAY68803.1| Single-stranded DNA endonuclease (with Rad1p), cleaves
single-stranded DNA during nucleotide excisio
[Komagataella pastoris GS115]
gi|328352390|emb|CCA38789.1| DNA ligase [Komagataella pastoris CBS 7435]
Length = 324
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQM------DTDYLSRLTHALTSVRSVNKT 229
S L S EE Y+ +K YE +DL + + D+ + L ++TS+R++ KT
Sbjct: 215 SLVLSWSFEEAANYIVYLKQYE--LSDLSESTLINNSKQDSSSYNSLVKSVTSIRNITKT 272
Query: 230 DVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
D V L S FGSL +++A+ E ++ G+G+ KV R + F
Sbjct: 273 DAVNLISEFGSLRELVNANPESMSAVQGMGDIKVNRWASVVEDQF 317
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV--CDYLVGQNSCALYLSLE 184
N+I V++ Q GNPLLK+++ V W F+ + DYLV + L+LSL+
Sbjct: 111 NSIQVNKSQTGNPLLKHLKTVSWEFSSNIKQVDYLVNSQTFVLFLSLK 158
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF 270
+ LG GSLS M+ASME+LARCPGIGE+KVK LYD+
Sbjct: 559 IFELGPEEGSLSQTMNASMEELARCPGIGEQKVKCLYDSM 598
>gi|149244684|ref|XP_001526885.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449279|gb|EDK43535.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 399
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 167 VCDYLVGQN-SCALYLSLEECGRYLETIKVYENKP---ADLIQGQMDTDYLSRLTHALTS 222
+ D+ + + S L S EE G Y+ K ++N P D I+G DY S + A T+
Sbjct: 257 LSDFCIKHDLSLMLAWSFEEAGNYIALGKHFDNAPQKSKDSIKGFRGADYNSSVVEAFTT 316
Query: 223 VRSVNKTDVVTLGSTFGSLSHIMDASMED----------------------LARCPGIGE 260
V++VNKTDV L + + S+ I+ D LA G+G
Sbjct: 317 VKAVNKTDVSNLLANYKSVKEIILQCCRDEEGFGAGAATSSNNKSSNTNVGLANIAGLGS 376
Query: 261 RKVKRLYDTFHEPF 274
K + L F EPF
Sbjct: 377 VKRQNLKQMFLEPF 390
>gi|170587814|ref|XP_001898669.1| Helix-hairpin-helix motif family protein [Brugia malayi]
gi|158593939|gb|EDP32533.1| Helix-hairpin-helix motif family protein [Brugia malayi]
Length = 108
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 48/149 (32%)
Query: 128 SASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECG 187
S+S S ++ + I+ +RQ+GNP+LKYIRNV + +A++
Sbjct: 7 SSSQSGALLNSRLIINRKRQEGNPVLKYIRNVPFEWAEI--------------------- 45
Query: 188 RYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247
+ LT +RS+ +D L +TFGS+ I +A
Sbjct: 46 ---------------------------KAVKFLTVIRSLTVSDAQRLIATFGSIRKIANA 78
Query: 248 SMEDLARCPGIGERKVKRLYDTFHEPFKR 276
++ L CPG+G K ++ F F++
Sbjct: 79 DIDRLLLCPGLGPTKAGNIHAFFRSSFQK 107
>gi|150951154|ref|XP_001387425.2| ssDNA endonuclease and repair protein [Scheffersomyces stipitis CBS
6054]
gi|149388363|gb|EAZ63402.2| ssDNA endonuclease and repair protein [Scheffersomyces stipitis CBS
6054]
Length = 406
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADL---IQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
S + S EE G Y+ K + P I+G DY S + A+T ++ +NKTDV
Sbjct: 258 SLVIASSFEEAGNYVVQAKKSYDAPVKSKGGIRGMRGLDYNSSVLEAMTGIQRINKTDVS 317
Query: 233 TLGSTFGSLSH-IMDASMED----LARCPGIGERKVKRLYDTFHEPF 274
L + F S+ I+ + ED L G+G K++ L F EPF
Sbjct: 318 NLLANFKSVKEIILQGAHEDSESRLGMIGGLGAAKIRNLRRVFSEPF 364
>gi|390371183|dbj|GAB65064.1| ERCC1 nucleotide excision repair protein, partial [Plasmodium
cynomolgi strain B]
Length = 210
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTF 238
L S EEC R +E K+YE K + + ++ + + ++ L +R +N +D T+ + F
Sbjct: 133 LCWSTEECARVIEDFKIYEKKISYIKNNKLTSTHAEKIHELLKKIRCINSSDCATITNKF 192
Query: 239 GSLSHIMDASMEDLARC 255
S +I+ A +DL C
Sbjct: 193 KSFKNIVMAKKDDLINC 209
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 67/119 (56%), Gaps = 17/119 (14%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKP 200
+++S RQK NP+LK I VR+ F++++ D+L+G+N+ L++S++ Y
Sbjct: 36 LVISPRQKLNPILKKINRVRYKFSNIIPDFLIGKNNACLFISMK-----------YHRLR 84
Query: 201 ADLIQGQMDT---DYLSRLTHALTSVRSVNKT--DVVTLGSTFGSLSHIMDASMEDLAR 254
++ ++ +++T Y +R+ L + ++ + ++ L F +++ I+ S E+ AR
Sbjct: 85 SNYLKARIETLSNKYNNRILLCLVDIENIENSLGEINQLAFCF-NMTLILCWSTEECAR 142
>gi|324523831|gb|ADY48308.1| DNA excision repair protein ERCC-1 [Ascaris suum]
Length = 226
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 119 EQNVGTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCA 178
E+N +A ASS +I R RQ+GNP+LKYIRNV + +AD+ D+ G+
Sbjct: 2 ERNTSGQAAPASSKLAINRR-------RQEGNPVLKYIRNVPFEWADIKADFEAGKEMGI 54
Query: 179 LYLSLE 184
LYLSL+
Sbjct: 55 LYLSLK 60
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+ R L +RS++ +D L TFGS++ I +A +E L+ CPG+G K + ++ F
Sbjct: 162 IQRAVDLLCGIRSISTSDAQRLIGTFGSIAAIANADVERLSLCPGLGPVKAENIFMFFRI 221
Query: 273 PF 274
PF
Sbjct: 222 PF 223
>gi|72391070|ref|XP_845829.1| DNA repair protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176456|gb|AAX70564.1| DNA repair protein, putative [Trypanosoma brucei]
gi|70802365|gb|AAZ12270.1| DNA repair protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 266
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQG-QMDTDYLSRLTHALTSV-RSVNKTDVVTLGS 236
L+ + EEC YLE + AD G + D+ + L ALT + + + DVV +
Sbjct: 117 LFWTDEECAAYLEGLSDSNVATADYCVGVRRDSTPMQLLIDALTQTPQLMTRNDVVRAVN 176
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERS 296
+FGS++ ++ A+ E L PG ++K RL+ + PF + R
Sbjct: 177 SFGSVAGLLTATAEQLTELPGFAQKKAGRLHAVLNAPF-----------------NTSRC 219
Query: 297 SVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAK 333
V +V + ++D + ++ + T+K AL + +
Sbjct: 220 LVADVLQRDQDESNDESSERRPAQETMKQALRCIYDR 256
>gi|261329278|emb|CBH12259.1| DNA repair protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 266
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQG-QMDTDYLSRLTHALTSV-RSVNKTDVVTLGS 236
L+ + EEC YLE + AD G + D+ + L ALT + + + DVV +
Sbjct: 117 LFWTDEECAAYLEGLSDSNVATADYCVGVRRDSTPMQLLIDALTQTPQLMTRNDVVRAVN 176
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERS 296
+FGS++ ++ A+ E L PG ++K RL+ + PF + R
Sbjct: 177 SFGSVAGLLTATAEQLTELPGFAQKKAGRLHAVLNAPF-----------------NTSRC 219
Query: 297 SVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAK 333
V +V + ++D + ++ + T+K AL + +
Sbjct: 220 LVADVLQRDQDESNDESSERRPAQETMKQALRCIYDR 256
>gi|384493403|gb|EIE83894.1| hypothetical protein RO3G_08599 [Rhizopus delemar RA 99-880]
Length = 162
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVV-CDYLVGQNSCALYLSLEECGRYLETIKVYE 197
N ILVS Q+ NP+LK+IRNV + ++ + DY+VGQ + +YLSL Y I
Sbjct: 87 NTILVSPNQQKNPVLKFIRNVPYEPSESIKVDYVVGQTTGVIYLSLRYHRLYPTYIYDRL 146
Query: 198 NKPADLIQGQMDTD 211
N L + Q D+D
Sbjct: 147 NNVKHLERDQSDSD 160
>gi|323143662|ref|ZP_08078336.1| DNA ligase (NAD+) [Succinatimonas hippei YIT 12066]
gi|322416595|gb|EFY07255.1| DNA ligase [Succinatimonas hippei YIT 12066]
Length = 696
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ +TL + F +L+ IM AS+EDL + P IG +YD F E
Sbjct: 518 LNRFIYAL-GIREVGESTALTLATHFETLNDIMRASVEDLMKLPDIGVVVANHIYDFFKE 576
Query: 273 P 273
P
Sbjct: 577 P 577
>gi|386827008|ref|ZP_10114115.1| DNA ligase, NAD-dependent [Beggiatoa alba B18LD]
gi|386427892|gb|EIJ41720.1| DNA ligase, NAD-dependent [Beggiatoa alba B18LD]
Length = 684
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ TL + FG L+ I AS DL + P +GE +++Y FHE
Sbjct: 510 LARFLYAL-GIREVGESTARTLANYFGDLNAIQQASEIDLQKVPDVGEVVAQQIYHFFHE 568
Query: 273 PFKRVV 278
P + +
Sbjct: 569 PHNQAI 574
>gi|402590541|gb|EJW84471.1| helix-hairpin-helix domain-containing protein family protein
[Wuchereria bancrofti]
Length = 163
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 127 ASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+S S + + I+ +RQ+GNP+LKYIRNV + +AD+ D+ G+ LYLSL+
Sbjct: 5 SSIQSGTVLLNSRLIISRKRQEGNPVLKYIRNVPFEWADIKADFEAGKEMGILYLSLK 62
>gi|312077422|ref|XP_003141297.1| helix-hairpin-helix domain-containing protein family protein [Loa
loa]
gi|307763540|gb|EFO22774.1| helix-hairpin-helix domain-containing protein family protein [Loa
loa]
Length = 253
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 128 SASSSQSIQSRNAILVSQ-RQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
S+S S +I + +++++ RQ+GNP+LKYIRNV + +AD+ D+ G+ LYLSL+
Sbjct: 33 SSSQSGTILPNSRLIINRKRQEGNPVLKYIRNVPFEWADIKADFEAGKEMGILYLSLK 90
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268
D + L + LT +RS+ +D L + FGS+ I +A ++ L CPG+G K +Y
Sbjct: 185 DDNELHQAIKFLTIIRSLTISDAQRLIAIFGSIRRIANADIDRLLLCPGLGPTKAGNIYA 244
Query: 269 TFHEPFKR 276
F F++
Sbjct: 245 FFRTTFQK 252
>gi|269836970|ref|YP_003319198.1| NAD-dependent DNA ligase [Sphaerobacter thermophilus DSM 20745]
gi|269786233|gb|ACZ38376.1| DNA ligase, NAD-dependent [Sphaerobacter thermophilus DSM 20745]
Length = 680
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSRL HAL +R V + + L F S+ I AS+E+L PG G + +YD F E
Sbjct: 511 LSRLLHAL-GIRHVGERNARLLAQHFNSMDRIAAASIEELQGIPGFGRVVAEAVYDFFRE 569
Query: 273 P 273
P
Sbjct: 570 P 570
>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R AL R V + + L + FG+LS I +ASME L P +GE + +Y F E
Sbjct: 576 LARFVFAL-GCRHVGEATALGLANHFGTLSAIENASMEALTGVPDVGEVVAESIYAFFRE 634
Query: 273 PFKRVV 278
P R V
Sbjct: 635 PHNRTV 640
>gi|429963290|gb|ELA42834.1| DNA repair protein rad10 [Vittaforma corneae ATCC 50505]
Length = 188
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
EEC +Y++ + + ++++ + T + L + VNKTD TL F +L
Sbjct: 101 EECSKYIKGFDLCSKRGVEILRNKDST-----VDTFLQTFNKVNKTDAATLKRKFSTLLE 155
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+ +A +DLA GIG+ K ++L FKR
Sbjct: 156 LFNAGEKDLANAVGIGKVKAQQLKKYLDRSFKR 188
>gi|428673258|gb|EKX74171.1| DNA repair protein rad10, putative [Babesia equi]
Length = 206
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 60/200 (30%)
Query: 135 IQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE----ECGRYL 190
I++ + +++S RQ+ NPL+K RN+ + +D+ D+++ L+LSL+ +
Sbjct: 6 IRNDDHLIISPRQRRNPLVKCFRNITFVESDIPADFMISPEISVLFLSLKYHRLHSNYII 65
Query: 191 ETIK-VYENK-PADLIQGQMDT----DYLSRLT-HALT---------------------- 221
E IK + ++K P I Q+D + L++LT H T
Sbjct: 66 ERIKSIRQHKIPNLFILCQVDIAEFANILNQLTVHTFTYGYKILLSWNCHESAAVIEILK 125
Query: 222 ---------------------------SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLAR 254
SVRS+N +D + F +L I+ +++
Sbjct: 126 LNYYKGIEILNKKETKTHFETVCDMISSVRSINSSDASLICRKFKTLKEIVHLGEDEIYS 185
Query: 255 CPGIGERKVKRLYDTFHEPF 274
PG GE+KVK L F F
Sbjct: 186 IPGCGEKKVKALTAAFKNSF 205
>gi|25144926|ref|NP_492652.2| Protein ERCC-1 [Caenorhabditis elegans]
gi|21615452|emb|CAB02283.2| Protein ERCC-1 [Caenorhabditis elegans]
Length = 262
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 134 SIQSRNAILVSQR-QKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
I A++V++R Q+GNP+LKY+RNVR+ + D+ D+ G +YLS +
Sbjct: 44 GIGGSGALVVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFK 95
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMD-------TDYLSRLTHA----LTSVRSVNKTD 230
++EE Y+E K + K + + +D +D R A LT+ RS+ KTD
Sbjct: 153 TVEEAAEYIELFKTTQKKEITIKKKAIDDGGDSSMSDERRRNREAAIGFLTAARSITKTD 212
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L FG+L I AS ++ CPG+G K K L+ H
Sbjct: 213 ADRLLFHFGTLQAISTASETSISACPGVGPIKAKNLHSFLH 253
>gi|412990196|emb|CCO19514.1| predicted protein [Bathycoccus prasinos]
Length = 187
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 175 NSCALYLSLE--ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVV 232
N+ +L L+ + E GRY+ETI V + I + D+L+ L+ + +NK DV
Sbjct: 87 NAISLILAWDNAELGRYVETITVLLKETG--IGECNNLDFLTITFSTLSEITCLNKLDVS 144
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
T + F L +++ S+ A PGIG RK + + F
Sbjct: 145 TFINIFPDLLIVLNTSVLGFASVPGIGMRKAQHITSLVQNAFH 187
>gi|300087757|ref|YP_003758279.1| NAD-dependent DNA ligase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527490|gb|ADJ25958.1| DNA ligase, NAD-dependent [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 687
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L + +AL +R + + +L FGSLS + AS+E L PGIG + + + F E
Sbjct: 514 LHNVIYAL-GIRHIGAENAQSLAREFGSLSELAKASLERLISIPGIGVKIADSMLNYFSE 572
Query: 273 PF-KRVVSSHPPIPETPSQ 290
P +++VS I ETP+
Sbjct: 573 PHNQKIVSRLNEILETPTM 591
>gi|341898323|gb|EGT54258.1| hypothetical protein CAEBREN_04607 [Caenorhabditis brenneri]
Length = 263
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMD-------TDYLSRLTHA----LTSVRSVNKTD 230
++EE Y+E K + K + + +D +D R+ A LT+ RS+ KTD
Sbjct: 154 TVEEAAEYIELFKTTQKKEITIKKKVIDDGGDSSISDERRRMREAAIGFLTAARSITKTD 213
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L FG+L I A ++ CPG+G K K L+ H
Sbjct: 214 ADRLLFHFGTLQAISTADETAISACPGVGPIKAKNLHSFLH 254
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 145 QRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+RQ+GNP+LKY+RNVR+ + D+ D+ G +YLS +
Sbjct: 57 RRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFK 96
>gi|399114608|emb|CCG17402.1| DNA ligase [Taylorella equigenitalis 14/56]
Length = 681
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSR AL +R V +T L FG L IM AS E+L P +GE ++ F+E
Sbjct: 518 LSRFLFAL-GIRHVGETTARDLAKYFGDLYSIMQASTEELVSVPNVGEVMATSIHTFFNE 576
Query: 273 PFKRVVSS 280
P R V S
Sbjct: 577 PHNREVIS 584
>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|397661465|ref|YP_006502165.1| DNA ligase [Taylorella equigenitalis ATCC 35865]
gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|394349644|gb|AFN35558.1| DNA ligase [Taylorella equigenitalis ATCC 35865]
Length = 681
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSR AL +R V +T L FG L IM AS E+L P +GE ++ F+E
Sbjct: 518 LSRFLFAL-GIRHVGETTARDLAKYFGDLYSIMQASTEELVSVPNVGEVMATSIHTFFNE 576
Query: 273 PFKRVVSS 280
P R V S
Sbjct: 577 PHNREVIS 584
>gi|268564795|ref|XP_002639231.1| Hypothetical protein CBG03787 [Caenorhabditis briggsae]
Length = 233
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
Query: 182 SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHA-----------LTSVRSVNKTD 230
++EE Y+E K + K + + +D S ++ LT+ RS+ KTD
Sbjct: 125 TVEEAAEYIELFKTTQKKEITVKKKAIDDGGDSSMSDERRRNRETAIGFLTAARSITKTD 184
Query: 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L FG+L I AS ++ CPG+G K K L+ H
Sbjct: 185 ADRLLYHFGTLQEISTASETAISACPGVGPIKAKNLHSFLH 225
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 145 QRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+RQ+GNP+LKY+RNVR+ + D+ D+ G +YLS +
Sbjct: 28 RRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFK 67
>gi|308494348|ref|XP_003109363.1| hypothetical protein CRE_08225 [Caenorhabditis remanei]
gi|308246776|gb|EFO90728.1| hypothetical protein CRE_08225 [Caenorhabditis remanei]
Length = 247
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 124 TASASASSSQSIQSRNAILVSQR-QKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLS 182
++SA+ S A++V++R Q+GNP+LKY+RNVR+ + D+ D+ G +YLS
Sbjct: 21 SSSAADSGVVGGGGSGALVVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLS 80
Query: 183 LE 184
+
Sbjct: 81 FK 82
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 176 SCALYLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHA-----------LTSVR 224
S + ++EE Y+E K + K + + +D S ++ LT+ R
Sbjct: 134 SLVVVYTVEEAAEYIELFKTTQKKEITIKKKAIDDGGDSSMSDERRRNRETAIGFLTAAR 193
Query: 225 SVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
S+ KTD L FG+L + A+ ++ CPG+G K K L+ H
Sbjct: 194 SITKTDADRLLFHFGTLQAVSTATETAISVCPGVGPIKAKNLHSFLH 240
>gi|244538930|dbj|BAH82973.1| NAD-dependent DNA ligase LigA [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 683
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V + L + FGSL +IMDA+ +L+ IG K +Y+ HE
Sbjct: 510 LARFIYAL-GIREVGEATANNLTNHFGSLKNIMDATFNELSAIKNIGNISAKYIYNFMHE 568
Query: 273 PFKRVV 278
R+V
Sbjct: 569 KNNRMV 574
>gi|254576825|ref|XP_002494399.1| ZYRO0A00550p [Zygosaccharomyces rouxii]
gi|238937288|emb|CAR25466.1| ZYRO0A00550p [Zygosaccharomyces rouxii]
Length = 206
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 90 KSSEFYNPPPPPPANPPTTSQNPTLSQGGEQNVGTASASASSSQSIQSRNAILVSQRQKG 149
+++E P +N +S N S G+ N ++ A+ + + ++LV+ QK
Sbjct: 38 RTTEQVEPSKDVRSNEVISSFNQQRSATGDSNTNEETSGAAPIRVSNTGKSVLVNTTQKA 97
Query: 150 NPLLKYIRNVRWAFAD------VVCDYLVGQNSCALYLSLEECGRYLETI 193
NPLL +++N W + + DYL+ +N L+L+L Y E I
Sbjct: 98 NPLLNHLKNTNWRYVSSTGGNKIYYDYLI-KNRSVLFLTLTYHKLYTEYI 146
>gi|121996832|ref|YP_001001619.1| excinuclease ABC subunit C [Halorhodospira halophila SL1]
gi|121588237|gb|ABM60817.1| Excinuclease ABC subunit C [Halorhodospira halophila SL1]
Length = 613
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+L FG + I A +EDLAR PGI +R+YDTFH
Sbjct: 574 SLLKHFGGIQGIRQAGIEDLARVPGIHRSLAQRIYDTFH 612
>gi|414155026|ref|ZP_11411342.1| DNA ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411453339|emb|CCO09246.1| DNA ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 669
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+RL AL +R V + L FGSL+ IM+A+ EDL P IG + + + D F
Sbjct: 505 LARLLFAL-GIRHVGERAAKVLAQHFGSLTAIMNATFEDLTVIPEIGPKIAESVVDYFAR 563
Query: 273 PFKR 276
P R
Sbjct: 564 PDHR 567
>gi|415726969|ref|ZP_11471197.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703Dmash]
gi|388062698|gb|EIK85303.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703Dmash]
Length = 765
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L S+FGSL + AS+EDL + GIGE K K ++D H
Sbjct: 722 LLSSFGSLKELKKASLEDLQKVNGIGESKAKTIFDALH 759
>gi|333368221|ref|ZP_08460431.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
Length = 695
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF 270
LSR +A+ ++ V +T L FG L +MDAS+E L P IG +++YD F
Sbjct: 532 LSRFIYAI-GIKGVGETTAQNLAKHFGDLPALMDASIESLEAVPDIGTITAEQIYDFF 588
>gi|402590542|gb|EJW84472.1| hypothetical protein WUBG_04617 [Wuchereria bancrofti]
Length = 73
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273
S+ LT +RS+ +D L +TFGS+ I +A ++ L CPG+G K ++ F
Sbjct: 10 SKAVKFLTVIRSLTVSDAQRLIATFGSIRKIANADIDRLLLCPGLGPTKAGNIHAFFRSS 69
Query: 274 FKR 276
F++
Sbjct: 70 FQK 72
>gi|415717341|ref|ZP_11466792.1| excinuclease ABC subunit C, partial [Gardnerella vaginalis 1500E]
gi|388060941|gb|EIK83611.1| excinuclease ABC subunit C, partial [Gardnerella vaginalis 1500E]
Length = 334
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L S+FGSL + AS+EDL + GIGE K K ++D H
Sbjct: 291 LLSSFGSLKELKKASLEDLQKVNGIGESKAKTIFDALH 328
>gi|337285532|ref|YP_004625005.1| DNA ligase, NAD-dependent [Thermodesulfatator indicus DSM 15286]
gi|335358360|gb|AEH44041.1| DNA ligase, NAD-dependent [Thermodesulfatator indicus DSM 15286]
Length = 693
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R +AL +R V + TL F SL IM+ASM +L PG+G + + + F
Sbjct: 529 LPRFLYAL-GIRHVGEVAAQTLAEHFKSLDKIMNASMAELMAIPGVGPEMARSIVEYFRN 587
Query: 273 PFKRVV 278
P R V
Sbjct: 588 PHNREV 593
>gi|156089769|ref|XP_001612291.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799545|gb|EDO08723.1| hypothetical protein BBOV_III011710 [Babesia bovis]
Length = 148
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHI 244
E LE +K+ +K + + + + L + + ++R+VN TD V + T + I
Sbjct: 58 ESATILEILKLDGHKGLEFLNRKEEKTQLETVQGIIAAIRNVNSTDAVKISRTASTFKEI 117
Query: 245 MDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ + + L PG+G+RKV+ + F++ F
Sbjct: 118 LRCTADTLGGIPGLGKRKVESIISAFNDSF 147
>gi|415729426|ref|ZP_11472452.1| excinuclease ABC subunit C [Gardnerella vaginalis 6119V5]
gi|388064460|gb|EIK86994.1| excinuclease ABC subunit C [Gardnerella vaginalis 6119V5]
Length = 762
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L S+FGSL + AS+EDL + GIGE K K ++D H
Sbjct: 719 LLSSFGSLKELKKASLEDLQKVNGIGESKAKTIFDALH 756
>gi|445063464|ref|ZP_21375665.1| NAD-dependent DNA ligase [Brachyspira hampsonii 30599]
gi|444505155|gb|ELV05716.1| NAD-dependent DNA ligase [Brachyspira hampsonii 30599]
Length = 667
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A++EDL GIGE K +YD H
Sbjct: 506 LKRFIYAL-GIRQVGETTADLLAKYFTSIDNFKKATIEDLQNIEGIGEISAKSIYDFLH 563
>gi|429122807|ref|ZP_19183340.1| NAD-dependent DNA ligase [Brachyspira hampsonii 30446]
gi|426281262|gb|EKV58261.1| NAD-dependent DNA ligase [Brachyspira hampsonii 30446]
Length = 663
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A++EDL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIDNFKKATIEDLQNIEGIGEISAKSIYDFLH 560
>gi|296126514|ref|YP_003633766.1| NAD-dependent DNA ligase [Brachyspira murdochii DSM 12563]
gi|296018330|gb|ADG71567.1| DNA ligase, NAD-dependent [Brachyspira murdochii DSM 12563]
Length = 663
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A++EDL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIENFKKAAIEDLQNIEGIGEISAKSIYDFLH 560
>gi|198283111|ref|YP_002219432.1| excinuclease ABC subunit C [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198247632|gb|ACH83225.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 623
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + + V L FG L I DA MEDL R GI +R+YD FH
Sbjct: 568 LDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLELAQRIYDFFH 619
>gi|218667420|ref|YP_002425340.1| excinuclease ABC subunit C [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218519633|gb|ACK80219.1| excinuclease ABC, C subunit [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 608
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + + V L FG L I DA MEDL R GI +R+YD FH
Sbjct: 553 LDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLELAQRIYDFFH 604
>gi|428775877|ref|YP_007167664.1| excinuclease ABC subunit C [Halothece sp. PCC 7418]
gi|428690156|gb|AFZ43450.1| Excinuclease ABC subunit C [Halothece sp. PCC 7418]
Length = 623
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
TL + F SL +I AS+E L PGIG+ K++YD FH
Sbjct: 585 TLLAHFRSLEYIRQASLEQLQDVPGIGQSLAKQIYDYFH 623
>gi|326381521|ref|ZP_08203215.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
gi|326199768|gb|EGD56948.1| NAD-dependent DNA ligase LigA [Gordonia neofelifaecis NRRL B-59395]
Length = 692
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L + FG L I AS+EDLA+ G+G + ++D F
Sbjct: 521 LWRVIVAL-SIRHVGPTPARALATAFGDLEAIQAASVEDLAQVDGLGPTRAASVHDWFAV 579
Query: 273 PFKR--VVSSHPPIPETPSQKD--VERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALS 328
+ R V ++D +ER+ + V D ++ KE + S
Sbjct: 580 DWHREIVAKWRAAGVSMADERDDSIERTLEGKTIVVTGSLVDFSRDGAKEAIISRGGKAS 639
Query: 329 AAFAKYADKI------GKKKNRSSQVG 349
+ +K D + G K +++ Q+G
Sbjct: 640 GSVSKKTDYVVVGEAAGSKADKAEQLG 666
>gi|403221359|dbj|BAM39492.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 191
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 132 SQSIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+ +I + ++VS RQ+ NP+L++I+NV + D+ D+++ ++ L+LSL+
Sbjct: 3 TNAINQDDQLIVSPRQRKNPVLRFIKNVSYIEGDIASDFMISKDIGVLFLSLK 55
>gi|415711415|ref|ZP_11464152.1| excinuclease ABC subunit C [Gardnerella vaginalis 55152]
gi|388058249|gb|EIK81046.1| excinuclease ABC subunit C [Gardnerella vaginalis 55152]
Length = 743
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASIDDLQKVSGIGQAKAKSIYESLHK 743
>gi|415716459|ref|ZP_11466451.1| excinuclease ABC subunit C [Gardnerella vaginalis 1400E]
gi|388057076|gb|EIK79909.1| excinuclease ABC subunit C [Gardnerella vaginalis 1400E]
Length = 743
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKRRLLSVFGSVKKLKDASIDDLQKVSGIGQAKAKSIYESLHK 743
>gi|415707229|ref|ZP_11462076.1| excinuclease ABC subunit C [Gardnerella vaginalis 0288E]
gi|388054229|gb|EIK77174.1| excinuclease ABC subunit C [Gardnerella vaginalis 0288E]
Length = 743
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|415705293|ref|ZP_11460564.1| excinuclease ABC subunit C [Gardnerella vaginalis 75712]
gi|388052015|gb|EIK75039.1| excinuclease ABC subunit C [Gardnerella vaginalis 75712]
Length = 743
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|417556635|ref|ZP_12207692.1| excinuclease ABC, C subunit [Gardnerella vaginalis 315-A]
gi|333602323|gb|EGL13753.1| excinuclease ABC, C subunit [Gardnerella vaginalis 315-A]
Length = 743
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|385801708|ref|YP_005838111.1| excinuclease ABC subunit C [Gardnerella vaginalis HMP9231]
gi|333393682|gb|AEF31600.1| excinuclease ABC, C subunit [Gardnerella vaginalis HMP9231]
Length = 743
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
Length = 688
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 37/195 (18%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 473 IIDQLVEQNLVRTPADLFNLGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 528
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL +R V ++ L FGSL IMDAS+E+L +G + ++ F E R V
Sbjct: 529 AL-GIRHVGESTAKDLAKHFGSLDPIMDASLEELLEVNDVGPVVAESIHQFFAEDHNRTV 587
Query: 279 SSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSA 326
PP P+ P V ++ V T ED K
Sbjct: 588 IEQLRAPGKVAWPEGPPAPKAPQGVLVGQTVVLTGTLPNLSRED------------AKEM 635
Query: 327 LSAAFAKYADKIGKK 341
L AA AK A + KK
Sbjct: 636 LEAAGAKVAGSVSKK 650
>gi|311114686|ref|YP_003985907.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC
14019]
gi|310946180|gb|ADP38884.1| excision endonuclease subunit UvrC [Gardnerella vaginalis ATCC
14019]
Length = 749
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 693 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 749
>gi|415702278|ref|ZP_11458500.1| excinuclease ABC subunit C [Gardnerella vaginalis 284V]
gi|388053607|gb|EIK76587.1| excinuclease ABC subunit C [Gardnerella vaginalis 284V]
Length = 743
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|308235009|ref|ZP_07665746.1| excinuclease ABC subunit C [Gardnerella vaginalis ATCC 14018 = JCM
11026]
Length = 743
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L +L S+ + + L S FGS+ + DAS++DL + GIG+ K K +Y++ H+
Sbjct: 687 LNSSLDSIPGIGEFYKKRLLSVFGSVKKLKDASVDDLQKVSGIGQAKAKSIYESLHK 743
>gi|288930501|ref|YP_003434561.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
gi|288892749|gb|ADC64286.1| ERCC4 domain protein [Ferroglobus placidus DSM 10642]
Length = 213
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
LT++ + + L FG+L I +AS+ +L R GIGE+ +R+YD F
Sbjct: 157 LTAIPGIGEERAKRLLEKFGNLQRIANASLYELMRVEGIGEKYARRIYDAFR 208
>gi|415980370|ref|ZP_11559172.1| excinuclease ABC subunit C, partial [Acidithiobacillus sp. GGI-221]
gi|339834299|gb|EGQ62073.1| excinuclease ABC subunit C [Acidithiobacillus sp. GGI-221]
Length = 220
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + + V L FG L I DA MEDL R GI +R+YD FH
Sbjct: 165 LDGISGIGPKRRVALLRAFGGLRGIRDAGMEDLQRVEGIHLELAQRIYDFFH 216
>gi|325267203|ref|ZP_08133869.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394]
gi|324981336|gb|EGC16982.1| excinuclease ABC subunit C [Kingella denitrificans ATCC 33394]
Length = 615
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+R+T +L + V L FG L + AS+EDLA+ GI +++YD FH
Sbjct: 557 ARITSSLNDIAGVGAKRKAALLMRFGGLRGVQAASVEDLAQVEGISRALAEKIYDYFH 614
>gi|410866836|ref|YP_006981447.1| DNA ligase [Propionibacterium acidipropionici ATCC 4875]
gi|410823477|gb|AFV90092.1| DNA ligase [Propionibacterium acidipropionici ATCC 4875]
Length = 734
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L FGS+ I DAS+EDLA G+G + + D F
Sbjct: 565 LWRVLVAL-SIRHVGPTAARALAGRFGSVQAIRDASVEDLAETDGVGRVIAESVLDWFTV 623
Query: 273 PFKR 276
+ R
Sbjct: 624 DWHR 627
>gi|328950509|ref|YP_004367844.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
gi|328450833|gb|AEB11734.1| DNA ligase [Marinithermus hydrothermalis DSM 14884]
Length = 676
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 190 LETIKVYENKPADLIQGQMD---TDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246
L +++ + K A+ + Q++ T L RL AL + V + TL FG+L +++
Sbjct: 480 LVSLERFGEKSAENLLAQIEASKTRGLERLLFAL-GIPQVGEALARTLARRFGTLDRLLE 538
Query: 247 ASMEDLARCPGIGERKVKRLYDTFHEP 273
A+ E+L +GE +R+++T H+P
Sbjct: 539 ATPEELLEVEDVGELTARRIHETLHDP 565
>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|257096312|sp|C4K4K4.1|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 702
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF-H 271
+R +AL +R V +T L FG L + A +E L + P +GE K L D F +
Sbjct: 534 FARFLYAL-GIREVGETTAANLALYFGQLDLLRKADIETLKKVPDVGEVVAKNLVDFFGN 592
Query: 272 EPFKRVVSSHPPIPETPSQKDVER 295
E ++V+S+ + + P + +E+
Sbjct: 593 EHHQQVISALESVLDWPDPEPIEK 616
>gi|341886848|gb|EGT42783.1| hypothetical protein CAEBREN_32406 [Caenorhabditis brenneri]
Length = 302
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 145 QRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
+RQ+GNP+LKY+RNVR+ + D+ D+ G +YLS +
Sbjct: 146 RRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGIVYLSFK 185
>gi|384210182|ref|YP_005595902.1| NAD-dependent DNA ligase LigA [Brachyspira intermedia PWS/A]
gi|343387832|gb|AEM23322.1| NAD-dependent DNA ligase LigA [Brachyspira intermedia PWS/A]
Length = 663
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIDNFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|332799512|ref|YP_004461011.1| UvrABC system protein C [Tepidanaerobacter acetatoxydans Re1]
gi|438002698|ref|YP_007272441.1| Excinuclease ABC subunit C [Tepidanaerobacter acetatoxydans Re1]
gi|332697247|gb|AEE91704.1| UvrABC system protein C [Tepidanaerobacter acetatoxydans Re1]
gi|432179492|emb|CCP26465.1| Excinuclease ABC subunit C [Tepidanaerobacter acetatoxydans Re1]
Length = 609
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L L + + K + L TFG L I AS+E+LA PG+ ++ + +Y+ FH
Sbjct: 550 LKSVLEDIPGIGKARRLALLKTFGGLEGIKQASLEELASAPGMNKKAAQAVYEYFH 605
>gi|434382905|ref|YP_006704688.1| NAD-dependent DNA ligase [Brachyspira pilosicoli WesB]
gi|404431554|emb|CCG57600.1| NAD-dependent DNA ligase [Brachyspira pilosicoli WesB]
Length = 663
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIDNFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|225620892|ref|YP_002722150.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
gi|254781267|sp|C0QVE5.1|DNLJ_BRAHW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|225215712|gb|ACN84446.1| NAD-dependent DNA ligase LigA [Brachyspira hyodysenteriae WA1]
Length = 663
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIENFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|359423300|ref|ZP_09214440.1| DNA ligase [Gordonia amarae NBRC 15530]
gi|358241470|dbj|GAB04022.1| DNA ligase [Gordonia amarae NBRC 15530]
Length = 745
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V + +L + FGSL + DAS++DLA+ G+G + + D F
Sbjct: 561 LWRVLVAL-SIRHVGPSAARSLATHFGSLQAVEDASVDDLAQVDGLGATLAQSIVDWFAV 619
Query: 273 PFKRVV 278
+ R +
Sbjct: 620 DWHRTI 625
>gi|384086512|ref|ZP_09997687.1| excinuclease ABC subunit C [Acidithiobacillus thiooxidans ATCC
19377]
Length = 619
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L S+ + + L FG L + DA ++DL R GI + +R+YD FH
Sbjct: 568 LDSIPGIGSKRRMALLRAFGGLKGVRDAGLDDLQRVEGIHQELAQRIYDHFH 619
>gi|20808370|ref|NP_623541.1| excinuclease ABC subunit C [Thermoanaerobacter tengcongensis MB4]
gi|32130303|sp|Q8R8M9.1|UVRC_THETN RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|20516981|gb|AAM25145.1| Nuclease subunit of the excinuclease complex [Thermoanaerobacter
tengcongensis MB4]
Length = 617
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
R L +++ + + L FGS+ I AS+E+L + G+ ER K +Y+ FH
Sbjct: 558 RFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKKVKGMNERSAKAVYEYFH 614
>gi|254478381|ref|ZP_05091759.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
gi|214035639|gb|EEB76335.1| excinuclease ABC, C subunit [Carboxydibrachium pacificum DSM 12653]
Length = 617
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
R L +++ + + L FGS+ I AS+E+L + G+ ER K +Y+ FH
Sbjct: 558 RFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKKVKGMNERSAKAVYEYFH 614
>gi|402851668|ref|ZP_10899812.1| Excinuclease ABC subunit C [Rhodovulum sp. PH10]
gi|402498050|gb|EJW09818.1| Excinuclease ABC subunit C [Rhodovulum sp. PH10]
Length = 763
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
FG+L I AS+ DLA PG+ + +R+YD FH+
Sbjct: 726 FGTLKAIERASLADLAHVPGVSDETARRIYDYFHD 760
>gi|404475223|ref|YP_006706654.1| NAD-dependent DNA ligase [Brachyspira pilosicoli B2904]
gi|404436712|gb|AFR69906.1| NAD-dependent DNA ligase [Brachyspira pilosicoli B2904]
Length = 663
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSVENFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|423585715|ref|ZP_17561802.1| hypothetical protein IIE_01127 [Bacillus cereus VD045]
gi|401233061|gb|EJR39557.1| hypothetical protein IIE_01127 [Bacillus cereus VD045]
Length = 356
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|399116529|emb|CCG19336.1| DNA ligase [Taylorella asinigenitalis 14/45]
Length = 682
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSR AL +R V +T L FG L IM A L++ P +GE +++ F E
Sbjct: 519 LSRFLFAL-GIRHVGETTARDLAKHFGDLQSIMTADTSKLSQVPNVGEVMADSIHNFFKE 577
Query: 273 PFKRVV 278
P R V
Sbjct: 578 PHNREV 583
>gi|387130038|ref|YP_006292928.1| excinuclease ABC subunit C [Methylophaga sp. JAM7]
gi|386271327|gb|AFJ02241.1| Excinuclease ABC subunit C [Methylophaga sp. JAM7]
Length = 610
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG L + A +EDLAR GI + +++YDTFH
Sbjct: 574 FGGLQEVQRAGVEDLARVEGISQSLAQKIYDTFH 607
>gi|300870442|ref|YP_003785313.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
gi|300688141|gb|ADK30812.1| NAD-dependent DNA ligase [Brachyspira pilosicoli 95/1000]
Length = 663
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSVENFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|431808726|ref|YP_007235624.1| NAD-dependent DNA ligase [Brachyspira pilosicoli P43/6/78]
gi|430782085|gb|AGA67369.1| NAD-dependent DNA ligase [Brachyspira pilosicoli P43/6/78]
Length = 663
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSVENFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>gi|229174543|ref|ZP_04302074.1| Proline dipeptidase [Bacillus cereus MM3]
gi|228608912|gb|EEK66203.1| Proline dipeptidase [Bacillus cereus MM3]
Length = 356
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|339627273|ref|YP_004718916.1| NAD-dependent DNA ligase [Sulfobacillus acidophilus TPY]
gi|379008346|ref|YP_005257797.1| DNA ligase [Sulfobacillus acidophilus DSM 10332]
gi|339285062|gb|AEJ39173.1| NAD-dependent DNA ligase [Sulfobacillus acidophilus TPY]
gi|361054608|gb|AEW06125.1| DNA ligase [Sulfobacillus acidophilus DSM 10332]
Length = 676
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSRL AL +R V + L FG L ++ A+ E+L P +GER + + F E
Sbjct: 506 LSRLLFAL-GIRFVGEKAAQVLARHFGHLDRVVAATREELLAVPDVGERTAESILAFFRE 564
Query: 273 PFKRVV 278
P + V
Sbjct: 565 PHNQAV 570
>gi|296135970|ref|YP_003643212.1| NAD-dependent DNA ligase [Thiomonas intermedia K12]
gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
Length = 688
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 194 KVYENKPADLIQGQM--DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMED 251
++ E A+L+Q T L+R +AL +R V + L FG L I+DAS+E
Sbjct: 503 RMAEKSAANLLQALQASKTTTLARFLYAL-GIRHVGEATAKDLARHFGGLDAILDASLEQ 561
Query: 252 LARCPGIGERKVKRLYDTFHEPFKRVV 278
L P +G + + F +P R V
Sbjct: 562 LLEVPDVGPVVAQSIRTFFDQPHNREV 588
>gi|384181690|ref|YP_005567452.1| aminopeptidase [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324327774|gb|ADY23034.1| aminopeptidase [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 356
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|229013060|ref|ZP_04170225.1| Proline dipeptidase [Bacillus mycoides DSM 2048]
gi|423489052|ref|ZP_17465734.1| hypothetical protein IEU_03675 [Bacillus cereus BtB2-4]
gi|423494777|ref|ZP_17471421.1| hypothetical protein IEW_03675 [Bacillus cereus CER057]
gi|423498431|ref|ZP_17475048.1| hypothetical protein IEY_01658 [Bacillus cereus CER074]
gi|423518566|ref|ZP_17495047.1| hypothetical protein IG7_03636 [Bacillus cereus HuA2-4]
gi|423598813|ref|ZP_17574813.1| hypothetical protein III_01615 [Bacillus cereus VD078]
gi|423661284|ref|ZP_17636453.1| hypothetical protein IKM_01681 [Bacillus cereus VDM022]
gi|423669450|ref|ZP_17644479.1| hypothetical protein IKO_03147 [Bacillus cereus VDM034]
gi|423674371|ref|ZP_17649310.1| hypothetical protein IKS_01914 [Bacillus cereus VDM062]
gi|228748314|gb|EEL98174.1| Proline dipeptidase [Bacillus mycoides DSM 2048]
gi|401150870|gb|EJQ58322.1| hypothetical protein IEW_03675 [Bacillus cereus CER057]
gi|401160480|gb|EJQ67858.1| hypothetical protein IEY_01658 [Bacillus cereus CER074]
gi|401160774|gb|EJQ68149.1| hypothetical protein IG7_03636 [Bacillus cereus HuA2-4]
gi|401237083|gb|EJR43540.1| hypothetical protein III_01615 [Bacillus cereus VD078]
gi|401298577|gb|EJS04177.1| hypothetical protein IKO_03147 [Bacillus cereus VDM034]
gi|401301325|gb|EJS06914.1| hypothetical protein IKM_01681 [Bacillus cereus VDM022]
gi|401309922|gb|EJS15255.1| hypothetical protein IKS_01914 [Bacillus cereus VDM062]
gi|402432300|gb|EJV64359.1| hypothetical protein IEU_03675 [Bacillus cereus BtB2-4]
Length = 356
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|423418217|ref|ZP_17395306.1| hypothetical protein IE3_01689 [Bacillus cereus BAG3X2-1]
gi|401106490|gb|EJQ14451.1| hypothetical protein IE3_01689 [Bacillus cereus BAG3X2-1]
Length = 356
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|167377631|ref|XP_001734475.1| Mating-type switching protein swi10 [Entamoeba dispar SAW760]
gi|165903998|gb|EDR29371.1| Mating-type switching protein swi10, putative [Entamoeba dispar
SAW760]
Length = 239
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 177 CALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L + S + Y+E V EN +L Q++ +++ +AL+ ++ +N + L
Sbjct: 115 CTLIIAQSYSDAAHYIEEFSVIENNQNEL-TNQINER--TQIINALSMIKGINSQNAYDL 171
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
F ++ I E+L + IG +KV+ ++ FH P
Sbjct: 172 LMKFNTIKRIGVVDKEELKKSKNIGPKKVESIWRVFHSPI 211
>gi|423401282|ref|ZP_17378455.1| hypothetical protein ICW_01680 [Bacillus cereus BAG2X1-2]
gi|423478014|ref|ZP_17454729.1| hypothetical protein IEO_03472 [Bacillus cereus BAG6X1-1]
gi|401654272|gb|EJS71815.1| hypothetical protein ICW_01680 [Bacillus cereus BAG2X1-2]
gi|402428176|gb|EJV60273.1| hypothetical protein IEO_03472 [Bacillus cereus BAG6X1-1]
Length = 356
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|229168616|ref|ZP_04296339.1| Proline dipeptidase [Bacillus cereus AH621]
gi|423592128|ref|ZP_17568159.1| hypothetical protein IIG_00996 [Bacillus cereus VD048]
gi|228615022|gb|EEK72124.1| Proline dipeptidase [Bacillus cereus AH621]
gi|401232261|gb|EJR38763.1| hypothetical protein IIG_00996 [Bacillus cereus VD048]
Length = 356
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGETSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|298252784|ref|ZP_06976578.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1]
gi|297533148|gb|EFH72032.1| excinuclease ABC subunit C [Gardnerella vaginalis 5-1]
Length = 779
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
L ++FGS+ + +AS+EDL + PGIGE K K +Y
Sbjct: 737 LFASFGSIKSLKNASLEDLQKVPGIGENKAKAIY 770
>gi|83590843|ref|YP_430852.1| NAD-dependent DNA ligase [Moorella thermoacetica ATCC 39073]
gi|123739230|sp|Q2RGY0.1|DNLJ_MOOTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|83573757|gb|ABC20309.1| DNA ligase, NAD-dependent [Moorella thermoacetica ATCC 39073]
Length = 666
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R+V + L FGSL + A++E+L P IG R + + + F E
Sbjct: 506 LERLIFAL-GIRNVGQRAARVLADHFGSLDKLAAATVEELTALPDIGPRIAENIREFFGE 564
Query: 273 PFKRVV 278
P R V
Sbjct: 565 PRNRAV 570
>gi|54295483|ref|YP_127898.1| excinuclease ABC subunit C [Legionella pneumophila str. Lens]
gi|81367729|sp|Q5WTF5.1|UVRC_LEGPL RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|53755315|emb|CAH16811.1| hypothetical protein lpl2570 [Legionella pneumophila str. Lens]
Length = 618
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+R+ L S+ V L FG L + AS+E++ + GI E+ KR+Y+ FH
Sbjct: 560 TRVESTLESIEGVGAKRRQALLQRFGGLRELAKASLEEICKVQGISEQLAKRIYEHFH 617
>gi|334130488|ref|ZP_08504285.1| DNA ligase Polydeoxyribonucleotide synthase NAD+ [Methyloversatilis
universalis FAM5]
gi|333444597|gb|EGK72546.1| DNA ligase Polydeoxyribonucleotide synthase NAD+ [Methyloversatilis
universalis FAM5]
Length = 689
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 181 LSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGS 240
L L E R E K EN A L + + T L R AL +R V + L GS
Sbjct: 498 LKLAELDRMAE--KSAENLVASLEKSKRTT--LGRFLFAL-GIRHVGEATAKDLARHLGS 552
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
+ IMDAS+E+L++ P +G ++ F +P R V
Sbjct: 553 MDRIMDASVEELSQVPDVGPVVAASIHTFFAQPHNREV 590
>gi|269219963|ref|ZP_06163817.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269210599|gb|EEZ76939.1| DNA ligase, NAD-dependent [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 799
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 210 TDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDT 269
T L R AL S+R V T + S+FGSLS +AS+E++A+ G+G + D
Sbjct: 624 TKELWRKIVAL-SIRHVGPTAAKAIASSFGSLSAAREASVEEMAQIDGVGRVIAQSFLDW 682
Query: 270 FHEPF 274
F P+
Sbjct: 683 FDVPW 687
>gi|428780221|ref|YP_007172007.1| excinuclease ABC subunit C [Dactylococcopsis salina PCC 8305]
gi|428694500|gb|AFZ50650.1| excinuclease ABC, C subunit [Dactylococcopsis salina PCC 8305]
Length = 623
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
TL + F SL +I AS+E L PGIG+ +++YD FH
Sbjct: 585 TLLAHFRSLEYIRQASLEQLQAVPGIGKALAQQIYDYFH 623
>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
gi|254781264|sp|A9II69.1|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
Length = 697
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 15/181 (8%)
Query: 190 LETIKVYENKPADLIQGQMD---TDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246
L ++ K AD + +D T L RL AL +R V +T + FGS+ IMD
Sbjct: 512 LAALERMGKKSADNLVAAIDRARTPSLGRLLFAL-GIRHVGETTARDVARHFGSIETIMD 570
Query: 247 ASMEDLARCPGIGERKVKRLYDTFHEPFKRVV-------SSHPPIPETPSQKDVERSSVN 299
A E LA P +G + F EP R + H P+PE Q +
Sbjct: 571 ADEEALAGAPDVGPVVAGSIRRFFAEPHNREIIDLLKAQGVH-PVPEAGPQGNTLAGKTF 629
Query: 300 EVTEVEKD-TEDVNKRRKKETESTVKSALS--AAFAKYADKIGKKKNRSSQVGETSVSNS 356
+T + T D R V ++S A+ ++ G K ++ ++G T +
Sbjct: 630 VLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTVLDED 689
Query: 357 G 357
G
Sbjct: 690 G 690
>gi|399217110|emb|CCF73797.1| unnamed protein product [Babesia microti strain RI]
Length = 227
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 185 ECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHI 244
E + +E ++Y KP+ I T Y S + ALT ++ ++ L F +L I
Sbjct: 108 ESAKLIEICRIYVLKPSTYINPSPSTIYES-VIEALTKSCKISTSNAKMLMERFNTLHGI 166
Query: 245 MDASMEDLARCP---------------------GIGERKVKRLYDTFHEPFK 275
M+A+ ++L +CP GIG++K + + + F+ PFK
Sbjct: 167 MNATYDELRKCPGQKCIIFLNFEKINLNDISHIGIGDKKAEFIVNAFNSPFK 218
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 141 ILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLS 182
+++S +QK NPL+ ++R+V + F +V D+ +GQ+ L++S
Sbjct: 5 LVISHKQKDNPLINHLRHVPYEFGEVKADFCIGQSIGILFIS 46
>gi|88602972|ref|YP_503150.1| Hef nuclease [Methanospirillum hungatei JF-1]
gi|88188434|gb|ABD41431.1| helicase-like protein [Methanospirillum hungatei JF-1]
Length = 750
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
L + FGSL I+DA E+L + PGIG +K + +Y+ P+
Sbjct: 709 LLTAFGSLKAIIDAEKEELLQVPGIGAKKAEMIYELSRRPY 749
>gi|452911366|ref|ZP_21960035.1| DNA ligase [Kocuria palustris PEL]
gi|452833484|gb|EME36296.1| DNA ligase [Kocuria palustris PEL]
Length = 746
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T +L + FGS+ I +AS E+LA G+G + + D F
Sbjct: 581 LWRVLVAL-SIRHVGPTAARSLATAFGSMDRIREASEEELAATDGVGPVIAREVIDWFQV 639
Query: 273 PFKRVVSSHPPIPETPSQKDVERSSVNEVTE-----VEKDTEDVNKRRKKETESTVKSAL 327
+ R + + +V+ SV +V E V ED ++ KE T
Sbjct: 640 DWHREIVESWAAAGVRMEDEVD-DSVPKVLEGLTIVVTGTLEDYSRDSAKEAILTRGGKA 698
Query: 328 SAAFAKYADKI------GKKKNRSSQVGETSVSNS 356
S + +K D + G K +++ +G T + +
Sbjct: 699 SGSVSKKTDFLVAGASAGSKLEKAASLGVTVLDEA 733
>gi|429101243|ref|ZP_19163217.1| DNA ligase [Cronobacter turicensis 564]
gi|426287892|emb|CCJ89330.1| DNA ligase [Cronobacter turicensis 564]
Length = 362
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 198 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 256
Query: 273 PFKRV--------VSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVK 324
R V H P P+ ++++ + + +++ K E +
Sbjct: 257 ESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVVLTGSLSQMSRDDAKGAERALG 316
Query: 325 SALSAAFAKYADKI------GKKKNRSSQVG 349
+ +S + +K D + G K ++ ++G
Sbjct: 317 AKVSGSVSKKTDLLIAGEAAGSKLAKAQELG 347
>gi|283783279|ref|YP_003374033.1| excinuclease ABC subunit C [Gardnerella vaginalis 409-05]
gi|297243494|ref|ZP_06927426.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD]
gi|283441822|gb|ADB14288.1| excinuclease ABC, C subunit [Gardnerella vaginalis 409-05]
gi|296888539|gb|EFH27279.1| excinuclease ABC subunit C [Gardnerella vaginalis AMD]
Length = 780
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
L ++FGS+ + +AS+EDL + PGIGE K K +Y
Sbjct: 738 LLASFGSIKSLKNASLEDLQKVPGIGENKAKAIY 771
>gi|296504372|ref|YP_003666072.1| Xaa-Pro dipeptidase [Bacillus thuringiensis BMB171]
gi|296325424|gb|ADH08352.1| Xaa-Pro dipeptidase [Bacillus thuringiensis BMB171]
Length = 356
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE--RKVKRLYDTFH 271
S L H + S + + + DVVTL FG+L D D+ R IGE + K++Y+
Sbjct: 192 SSLPHGVASNKIIERGDVVTL--DFGAL---YDGYCSDITRTVAIGEPSEEFKKIYNVVR 246
Query: 272 EPFKRVVSSHPPIPETPSQKDVERSSVNE 300
E KR + P S D+ R + E
Sbjct: 247 EALKRGTEAIKPGETAKSIDDITRDYITE 275
>gi|415709947|ref|ZP_11463526.1| excinuclease ABC subunit C [Gardnerella vaginalis 6420B]
gi|388055949|gb|EIK78834.1| excinuclease ABC subunit C [Gardnerella vaginalis 6420B]
Length = 780
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLY 267
L ++FGS+ + +AS+EDL + PGIGE K K +Y
Sbjct: 738 LIASFGSIKSLKNASLEDLQKVPGIGENKAKAIY 771
>gi|84998118|ref|XP_953780.1| DNA repair protein (RAD10 ) [Theileria annulata]
gi|65304777|emb|CAI73102.1| DNA repair protein (RAD10 homologue), putative [Theileria annulata]
Length = 216
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 135 IQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE-------ECG 187
I N +++S RQ+ NP+L++I+NV + D+ D+++ + L+LSL+
Sbjct: 6 INDDNNLIISPRQRKNPILRFIKNVPYIEGDIAPDFIISSDIYVLFLSLKYHRVNINYIK 65
Query: 188 RYLETIKVYENKPADLIQGQMD-TDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
LE++ Y+ K +I Q+D +DY L+ + T V L TFG
Sbjct: 66 NRLESLSQYKIKNLFII-CQIDVSDY----NQLLSKFLDLQWTIVNLLTITFG 113
>gi|261414540|ref|YP_003248223.1| NAD-dependent DNA ligase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789523|ref|YP_005820646.1| DNA ligase [Fibrobacter succinogenes subsp. succinogenes S85]
gi|261370996|gb|ACX73741.1| DNA ligase, NAD-dependent [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326001|gb|ADL25202.1| DNA ligase (NAD+) [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 715
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L L H L +R V +T + F +L I A++E+L +GER K +Y+ FH
Sbjct: 518 LENLLHGL-GIRFVGRTSARNIAKHFRTLEKIRTATVEELQNVTDVGERIGKSVYEFFHT 576
Query: 273 PF 274
P
Sbjct: 577 PL 578
>gi|410667027|ref|YP_006919398.1| UvrABC system protein C [Thermacetogenium phaeum DSM 12270]
gi|409104774|gb|AFV10899.1| UvrABC system protein C [Thermacetogenium phaeum DSM 12270]
Length = 609
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273
L V + K L FGSL+ + +A++E+LA PG+ + + LY+ H+P
Sbjct: 553 LEQVAGIGKKRQDALIRRFGSLARMREATLEELAEVPGMNRKAAEALYEFLHQP 606
>gi|355572972|ref|ZP_09043940.1| helicase domain protein [Methanolinea tarda NOBI-1]
gi|354823984|gb|EHF08243.1| helicase domain protein [Methanolinea tarda NOBI-1]
Length = 746
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
FGS+ +++A EDL R GIG+ + K++++ H P++
Sbjct: 709 FGSVQAVVNAQEEDLVRVKGIGKERAKKIWEVSHRPYR 746
>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
Length = 746
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 551 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 605
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 606 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 665
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 666 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 709
>gi|409730545|ref|ZP_11272109.1| NAD-dependent DNA ligase LigA [Halococcus hamelinensis 100A6]
gi|448722402|ref|ZP_21704938.1| NAD-dependent DNA ligase LigA [Halococcus hamelinensis 100A6]
gi|445789516|gb|EMA40197.1| NAD-dependent DNA ligase LigA [Halococcus hamelinensis 100A6]
Length = 715
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 190 LETIKVYENKPADLIQGQMDTDY---LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246
L + + K A+ ++ ++D LS AL V +V T L TFG L +MD
Sbjct: 522 LAALDGWGEKSAENLRAELDASKTPPLSVFITAL-GVPAVGSTTATALARTFGDLDSVMD 580
Query: 247 ASMEDLARCPGIGERKVKRLYDTF 270
AS +DL P IG R +++ F
Sbjct: 581 ASEDDLQEVPDIGPRVANEIHEFF 604
>gi|348589846|ref|YP_004874308.1| DNA ligase [Taylorella asinigenitalis MCE3]
gi|347973750|gb|AEP36285.1| DNA ligase [Taylorella asinigenitalis MCE3]
Length = 682
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSR AL +R V +T L FG L IM A L P +GE +++ F E
Sbjct: 519 LSRFLFAL-GIRHVGETTARDLAKHFGDLQSIMTADTSKLIEVPNVGEVMADSIHNFFKE 577
Query: 273 PFKRVV 278
P R V
Sbjct: 578 PHNREV 583
>gi|145342122|ref|XP_001416142.1| NA excision repair protein ERCC-1-like protein [Ostreococcus
lucimarinus CCE9901]
gi|144576367|gb|ABO94435.1| NA excision repair protein ERCC-1-like protein [Ostreococcus
lucimarinus CCE9901]
Length = 212
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 210 TDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDT 269
T +S + L+S+R +NK DV L + S S + ++ L+ CPG+G K + L
Sbjct: 129 TTMISDVCSILSSIRGINKLDVHALCHNYCSFSDLCKSNARSLSDCPGVGATKAQILRQA 188
Query: 270 FHEPFKRVVSSHPP 283
+P ++ H P
Sbjct: 189 LQKP---IMIDHDP 199
>gi|225851368|ref|YP_002731602.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
gi|254781385|sp|C0QSF6.1|DNLJ_PERMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|225645574|gb|ACO03760.1| DNA ligase, NAD-dependent [Persephonella marina EX-H1]
Length = 714
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
++RL L +R V K TL + + D S+EDL R P +G +YD FH
Sbjct: 542 INRLITGL-GIRFVGKVTARTLAENINCVEDLKDWSVEDLERLPDVGYVVAHSIYDFFHN 600
Query: 273 P 273
P
Sbjct: 601 P 601
>gi|390566564|ref|ZP_10246931.1| DNA ligase [Nitrolancetus hollandicus Lb]
gi|390170196|emb|CCF86283.1| DNA ligase [Nitrolancetus hollandicus Lb]
Length = 694
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSRL L + V + + L F ++ IM A +ED+ PG G + +YD F E
Sbjct: 509 LSRLLTGL-GILHVGERNARLLAEHFNTMGSIMQARIEDIQAIPGFGSVVAESIYDFFRE 567
Query: 273 P 273
P
Sbjct: 568 P 568
>gi|444921332|ref|ZP_21241169.1| UvrABC system protein C [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507691|gb|ELV07866.1| UvrABC system protein C [Wohlfahrtiimonas chitiniclastica SH04]
Length = 601
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L ++ + TL S FG LS + +A++ED+A+ PGI + K +++ HE
Sbjct: 547 VLEDIKGIGPQRRATLLSHFGGLSALKNATIEDIAKVPGISDSLAKVIHEALHE 600
>gi|402566193|ref|YP_006615538.1| NAD-dependent DNA ligase [Burkholderia cepacia GG4]
gi|402247390|gb|AFQ47844.1| NAD-dependent DNA ligase [Burkholderia cepacia GG4]
Length = 691
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|170733380|ref|YP_001765327.1| NAD-dependent DNA ligase [Burkholderia cenocepacia MC0-3]
gi|254781274|sp|B1JUF5.1|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
Length = 691
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|415724550|ref|ZP_11469928.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703C2mash]
gi|388062346|gb|EIK84963.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703C2mash]
Length = 751
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L ++ S+ + ++ L S FGS+ ++ +AS+E+L + PGIG K K +Y+ H
Sbjct: 694 LYSSIDSIPGIGESYKKRLLSKFGSVKNLKEASVEELQKVPGIGLLKAKTIYEFLH 749
>gi|375111281|ref|ZP_09757492.1| NAD-dependent DNA ligase [Alishewanella jeotgali KCTC 22429]
gi|374568823|gb|EHR39995.1| NAD-dependent DNA ligase [Alishewanella jeotgali KCTC 22429]
Length = 684
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R +AL +R V + + L + F SL +M AS+E L +G + LY F E
Sbjct: 516 LPRFIYAL-GIREVGEATALNLANHFASLDALMAASIEQLLEVSDVGTVVAEHLYHFFRE 574
Query: 273 PF-KRVVSS 280
P ++VVS+
Sbjct: 575 PHNQQVVSA 583
>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
gi|166215562|sp|A0K8E8.1|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215593|sp|Q1BHI7.2|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
Length = 691
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|78066803|ref|YP_369572.1| DNA ligase [Burkholderia sp. 383]
gi|123742568|sp|Q39F38.1|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
Length = 691
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|441516450|ref|ZP_20998198.1| DNA ligase [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456503|dbj|GAC56159.1| DNA ligase [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 689
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L FGSL + +A E+LA+ GIGE + D F
Sbjct: 526 LWRVLVAL-SIRHVGPTAARALAGAFGSLDALQEAGAEELAQVDGIGETLATSIRDWFDV 584
Query: 273 PFKR 276
+ R
Sbjct: 585 DWHR 588
>gi|367009764|ref|XP_003679383.1| hypothetical protein TDEL_0B00430 [Torulaspora delbrueckii]
gi|359747041|emb|CCE90172.1| hypothetical protein TDEL_0B00430 [Torulaspora delbrueckii]
Length = 205
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 123 GTASASASSSQSIQSRNAILVSQRQKGNPLLKYIRNVRWAF------ADVVCDYLVGQNS 176
G A Q I+ +LV+ QK NPLL +++N+ W + + DYL+ + S
Sbjct: 70 GKEEGEAKFYQGIKPGKTVLVNTTQKENPLLNHLKNINWRYISSSKGTKIYYDYLINRRS 129
Query: 177 CALYLSLEECGRYLETI 193
L+L+L Y + I
Sbjct: 130 V-LFLTLTYHKLYADYI 145
>gi|444429449|ref|ZP_21224632.1| NAD(+)-dependent DNA ligase [Gordonia soli NBRC 108243]
gi|443889565|dbj|GAC66353.1| NAD(+)-dependent DNA ligase [Gordonia soli NBRC 108243]
Length = 694
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
S+R V T L + FGSL I DA+ E+LA G+G + ++D F + R V
Sbjct: 533 SIRHVGPTAARALATEFGSLQRIQDATAEELAATEGVGATLAQSVHDWFAVDWHRDV 589
>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
Length = 691
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV------------SSHPPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V + PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|283779823|ref|YP_003370578.1| NAD-dependent DNA ligase [Pirellula staleyi DSM 6068]
gi|283438276|gb|ADB16718.1| DNA ligase, NAD-dependent [Pirellula staleyi DSM 6068]
Length = 676
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSRL + L S+R + L FG+L I A++EDL+R +GE +Y+ H
Sbjct: 509 LSRLLNGL-SIRHIGSNGSQVLARHFGTLDAIRQATLEDLSRVSEVGEITAASVYEFLHS 567
Query: 273 PFKR 276
+ +
Sbjct: 568 DYGK 571
>gi|429116447|ref|ZP_19177365.1| DNA ligase [Cronobacter sakazakii 701]
gi|426319576|emb|CCK03478.1| DNA ligase [Cronobacter sakazakii 701]
Length = 362
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 198 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 256
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 257 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 286
>gi|432328553|ref|YP_007246697.1| ERCC4-type nuclease [Aciduliprofundum sp. MAR08-339]
gi|432135262|gb|AGB04531.1| ERCC4-type nuclease [Aciduliprofundum sp. MAR08-339]
Length = 220
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 217 THALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+AL+S+ + + L + FGS+ I A++ +L + GIGE+K K++Y FH
Sbjct: 166 VYALSSLPYIGEKMARKLLAQFGSIEKIARANIVELKKVEGIGEKKAKQIYRIFH 220
>gi|334564099|ref|ZP_08517090.1| NAD-dependent DNA ligase LigA [Corynebacterium bovis DSM 20582]
Length = 719
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L S GS+ I DAS++++A+ G+G + + D F
Sbjct: 536 LWRVLVAL-SIRHVGPTAAKALASRIGSVDRIADASVDEMAQIDGVGPTIAESVRDWFSV 594
Query: 273 PFKRVV 278
P+ R +
Sbjct: 595 PWHREI 600
>gi|417792852|ref|ZP_12440163.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii E899]
gi|449307347|ref|YP_007439703.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii SP291]
gi|333953042|gb|EGL71033.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii E899]
gi|449097380|gb|AGE85414.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii SP291]
Length = 672
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 596
>gi|429087550|ref|ZP_19150282.1| DNA ligase [Cronobacter universalis NCTC 9529]
gi|426507353|emb|CCK15394.1| DNA ligase [Cronobacter universalis NCTC 9529]
Length = 362
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 198 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 256
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 257 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 286
>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
gi|166215403|sp|A7MKW4.1|DNLJ_CROS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
Length = 672
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 596
>gi|365922310|ref|ZP_09446538.1| excinuclease ABC, C subunit [Cardiobacterium valvarum F0432]
gi|364574523|gb|EHM51976.1| excinuclease ABC, C subunit [Cardiobacterium valvarum F0432]
Length = 608
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
FG L+ I A +E+LAR PG+ E K +Y T HE
Sbjct: 572 FGGLAQIRLAGVEELARVPGVSETLAKEIYATLHE 606
>gi|403731533|ref|ZP_10949340.1| DNA ligase [Gordonia rhizosphera NBRC 16068]
gi|403202169|dbj|GAB93671.1| DNA ligase [Gordonia rhizosphera NBRC 16068]
Length = 715
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
S+R V T L + FGSL I DAS+EDL G+G + ++D F + R
Sbjct: 555 SIRHVGPTAARALATQFGSLQAIDDASVEDLEGVEGLGATLAQSIHDWFTVDWHR 609
>gi|389840101|ref|YP_006342185.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ES15]
gi|387850577|gb|AFJ98674.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ES15]
Length = 672
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 596
>gi|452124713|ref|ZP_21937297.1| excinuclease ABC subunit C [Bordetella holmesii F627]
gi|451923943|gb|EMD74084.1| excinuclease ABC subunit C [Bordetella holmesii F627]
Length = 608
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + FG LS + AS+EDLA GI E +R+YD H
Sbjct: 570 LLARFGGLSGVTSASVEDLASVEGISEELAQRIYDALH 607
>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
Length = 672
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 596
>gi|452128107|ref|ZP_21940686.1| excinuclease ABC subunit C [Bordetella holmesii H558]
gi|451926322|gb|EMD76458.1| excinuclease ABC subunit C [Bordetella holmesii H558]
Length = 608
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + FG LS + AS+EDLA GI E +R+YD H
Sbjct: 570 LLARFGGLSGVTSASVEDLASVEGISEELAQRIYDALH 607
>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
gi|122322835|sp|Q0BE10.1|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
Length = 691
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV------------SSHPPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V + PP P
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|429111145|ref|ZP_19172915.1| DNA ligase [Cronobacter malonaticus 507]
gi|426312302|emb|CCJ99028.1| DNA ligase [Cronobacter malonaticus 507]
Length = 362
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 198 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 256
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 257 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 286
>gi|429120115|ref|ZP_19180800.1| DNA ligase [Cronobacter sakazakii 680]
gi|426325361|emb|CCK11537.1| DNA ligase [Cronobacter sakazakii 680]
Length = 672
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIHDLTEEVGIHWPAPQVVKAEEID 596
>gi|340054540|emb|CCC48840.1| putative DNA repair protein [Trypanosoma vivax Y486]
Length = 272
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Query: 179 LYLSLEECGRYLETIKVYENKPADLIQGQMDTDY--LSRLTHALTSV-RSVNKTDVVTLG 235
L + EEC YLE + D + M + + L A T + + + DVV
Sbjct: 117 LCWTEEECAAYLEGLSESSITSVDY-RATMRGERTPIGILVEAFTQTPQLMARNDVVRAA 175
Query: 236 STFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVER 295
FGS++ ++ A+ ED A PG G RK RL + F +SH + + DV
Sbjct: 176 HRFGSVASLLVATAEDFAALPGFGHRKAGRLTAVLNAIFP---TSHQLVCDVL-HGDVRP 231
Query: 296 SSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADK 337
+ + VT+ K ++ ES+ + + + A+ +K
Sbjct: 232 NGGDTVTD--------EKSEDRQGESSARELMLSKLAELMEK 265
>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
Length = 691
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|429105583|ref|ZP_19167452.1| DNA ligase [Cronobacter malonaticus 681]
gi|426292306|emb|CCJ93565.1| DNA ligase [Cronobacter malonaticus 681]
Length = 352
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 188 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLLKVPDVGIVVATHVFNFFEE 246
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 247 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 276
>gi|420256245|ref|ZP_14759099.1| DNA ligase, NAD-dependent [Burkholderia sp. BT03]
gi|398043606|gb|EJL36498.1| DNA ligase, NAD-dependent [Burkholderia sp. BT03]
Length = 683
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R +AL +R V ++ L FG
Sbjct: 488 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYAL-GIRHVGESTAKDLAKHFG 542
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
SL+ IMDAS+E+L +G + ++ F E R V
Sbjct: 543 SLTPIMDASVEELLEVNDVGPIVAESIHQFFAEEHNRTV 581
>gi|452124100|ref|ZP_21936684.1| DNA ligase [Bordetella holmesii F627]
gi|452127485|ref|ZP_21940066.1| DNA ligase [Bordetella holmesii H558]
gi|451923330|gb|EMD73471.1| DNA ligase [Bordetella holmesii F627]
gi|451926765|gb|EMD76895.1| DNA ligase [Bordetella holmesii H558]
Length = 694
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FG++S IMDA E L P +G ++ F E
Sbjct: 535 LGRLLFAL-GIRHVGETTARDVARHFGNISRIMDADEEALLAVPDVGPVVAGSIHRFFRE 593
Query: 273 PFKRVV 278
P R V
Sbjct: 594 PHNREV 599
>gi|415721074|ref|ZP_11468318.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703Bmash]
gi|388061335|gb|EIK83992.1| excinuclease ABC subunit C [Gardnerella vaginalis 00703Bmash]
Length = 754
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L ++ S+ + ++ L FGS+ ++ +AS+E+L + PGIG K K +Y+ H
Sbjct: 697 LYSSIDSIPGIGESYKKRLLCAFGSVKNLKEASIEELQKVPGIGLLKAKTIYEFLH 752
>gi|213691965|ref|YP_002322551.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|384199122|ref|YP_005584865.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|213523426|gb|ACJ52173.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|320458074|dbj|BAJ68695.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 788
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L AL + + K+ L + FGS+ + +AS+ED + GIG K + LY+ HE
Sbjct: 731 LRSALDEIPGIGKSYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEALYNALHE 787
>gi|421870305|ref|ZP_16301940.1| DNA ligase [Burkholderia cenocepacia H111]
gi|358069831|emb|CCE52818.1| DNA ligase [Burkholderia cenocepacia H111]
Length = 691
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|172060972|ref|YP_001808624.1| NAD-dependent DNA ligase [Burkholderia ambifaria MC40-6]
gi|254781273|sp|B1YSH2.1|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
Length = 691
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|258545961|ref|ZP_05706195.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826]
gi|258518839|gb|EEV87698.1| excinuclease ABC subunit C [Cardiobacterium hominis ATCC 15826]
Length = 607
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
FG L+ I A +EDLA+ PG+ E K +Y HE
Sbjct: 572 FGGLAQIRRAGVEDLAKVPGVSETLAKEIYAVLHE 606
>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|444359385|ref|ZP_21160703.1| DNA ligase (NAD+) [Burkholderia cenocepacia BC7]
gi|444367479|ref|ZP_21167421.1| DNA ligase (NAD+) [Burkholderia cenocepacia K56-2Valvano]
gi|254781275|sp|B4ECN6.1|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|443602144|gb|ELT70239.1| DNA ligase (NAD+) [Burkholderia cenocepacia BC7]
gi|443602820|gb|ELT70873.1| DNA ligase (NAD+) [Burkholderia cenocepacia K56-2Valvano]
Length = 691
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|163841673|ref|YP_001626078.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
gi|190359277|sp|A9WTZ3.1|DNLJ_RENSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|162955149|gb|ABY24664.1| NAD-dependent DNA ligase [Renibacterium salmoninarum ATCC 33209]
Length = 758
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L + FGS++ I AS +LA G+G L + F E
Sbjct: 578 LWRVLVAL-SIRHVGPTASRALATAFGSMAAIRAASEPELAEVDGVGPTIAAALIEWFAE 636
Query: 273 PFKRVV--SSHPPIPETPSQKD--VERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALS 328
+ R + + ++D V R+ V E N+ + KE +
Sbjct: 637 DWHREIIDAWAADGVRMADERDESVRRTLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSA 696
Query: 329 AAFAKYADKI------GKKKNRSSQVGETSVSNSGTENSNSGQPD 367
+ +K D + G K +++ ++G T + +G E + PD
Sbjct: 697 GSVSKNTDYVVAGENAGTKLDKAEKLGVTVLDEAGFETLLAHGPD 741
>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
Length = 691
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|390568902|ref|ZP_10249194.1| DNA ligase, NAD-dependent [Burkholderia terrae BS001]
gi|389939251|gb|EIN01088.1| DNA ligase, NAD-dependent [Burkholderia terrae BS001]
Length = 665
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R +AL +R V ++ L FG
Sbjct: 470 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYAL-GIRHVGESTAKDLAKHFG 524
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
SL+ IMDAS+E+L +G + ++ F E R V
Sbjct: 525 SLTPIMDASVEELLEVNDVGPIVAESIHQFFAEEHNRTV 563
>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
gi|166215568|sp|A4JF81.1|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
Length = 691
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|254503952|ref|ZP_05116103.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11]
gi|222440023|gb|EEE46702.1| excinuclease ABC, C subunit [Labrenzia alexandrii DFL-11]
Length = 656
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L + V T L S FG+ + A ++DLA PGI E + +YD FHE
Sbjct: 604 LDEIAGVGPTRKKALLSHFGTAKAVSKAGVDDLAAVPGISEAIARLVYDHFHE 656
>gi|421655914|ref|ZP_16096228.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-72]
gi|408506937|gb|EKK08641.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-72]
Length = 669
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKTANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|387902562|ref|YP_006332901.1| DNA ligase [Burkholderia sp. KJ006]
gi|387577454|gb|AFJ86170.1| DNA ligase [Burkholderia sp. KJ006]
Length = 691
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>gi|417555478|ref|ZP_12206547.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-81]
gi|421201484|ref|ZP_15658643.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC109]
gi|421456423|ref|ZP_15905765.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-123]
gi|421632722|ref|ZP_16073369.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-13]
gi|421803464|ref|ZP_16239382.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-694]
gi|395563516|gb|EJG25169.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC109]
gi|400210851|gb|EJO41815.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-123]
gi|400391895|gb|EJP58942.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-81]
gi|408708430|gb|EKL53704.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-13]
gi|410413055|gb|EKP64899.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-694]
Length = 669
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
Length = 691
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 526 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 584
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 585 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 644
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 645 SVSSKTKCVVAGEKAGSKLEKAAKLG 670
>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
gi|384142046|ref|YP_005524756.1| DNA ligase [Acinetobacter baumannii MDR-ZJ06]
gi|417571253|ref|ZP_12222110.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC189]
gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
gi|347592539|gb|AEP05260.1| DNA ligase [Acinetobacter baumannii MDR-ZJ06]
gi|395551701|gb|EJG17710.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC189]
Length = 691
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 526 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 584
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 585 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 644
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 645 SVSSKTKCVVAGEKAGSKLEKAAKLG 670
>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
gi|384205726|ref|YP_005591465.1| DNA ligase [Bordetella pertussis CS]
gi|408416511|ref|YP_006627218.1| DNA ligase [Bordetella pertussis 18323]
gi|81424006|sp|Q7VRX7.1|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
gi|401778681|emb|CCJ64124.1| DNA ligase [Bordetella pertussis 18323]
Length = 696
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>gi|336451990|ref|ZP_08622423.1| DNA ligase, NAD-dependent [Idiomarina sp. A28L]
gi|336281037|gb|EGN74321.1| DNA ligase, NAD-dependent [Idiomarina sp. A28L]
Length = 676
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 193 IKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDL 252
+K EN A L + + T L R ++L +R V + L FG L +M+AS E+L
Sbjct: 494 VKSAENLVAALEKSRTTT--LPRFLYSL-GIREVGEATAQNLALHFGDLPAVMNASEEEL 550
Query: 253 ARCPGIGERKVKRLYDTFHEP 273
+ P IG +Y+ F EP
Sbjct: 551 QKVPDIGVIVAAHVYNFFREP 571
>gi|417560103|ref|ZP_12210982.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC137]
gi|421625079|ref|ZP_16065935.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC098]
gi|254781232|sp|B0VU02.2|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|395522685|gb|EJG10774.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC137]
gi|408699504|gb|EKL44980.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC098]
Length = 678
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|452948407|gb|EME53886.1| DNA ligase [Acinetobacter baumannii MSP4-16]
Length = 678
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|429757590|ref|ZP_19290123.1| DNA ligase [Actinomyces sp. oral taxon 181 str. F0379]
gi|429174863|gb|EKY16329.1| DNA ligase [Actinomyces sp. oral taxon 181 str. F0379]
Length = 815
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGE---RKVKRLYDT 269
L+R+ AL S+R V T L TF S+ +M+AS+E LA+ G+G+ + ++ +D
Sbjct: 648 LARILVAL-SIRHVGPTAASALAMTFPSMDLLMEASVEQLAQVDGVGQVIAQSLREWFDV 706
Query: 270 -FHEPFKRVVSSHPPIPETPSQKDVERS 296
+H R + E ++D+E++
Sbjct: 707 DWHVEIIRAWQAAGVRMEDEVREDIEQT 734
>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
Length = 691
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 526 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 584
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 585 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 644
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 645 SVSSKTKCVVAGEKAGSKLEKAAKLG 670
>gi|421696425|ref|ZP_16136011.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-692]
gi|404561605|gb|EKA66831.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-692]
Length = 669
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|417545805|ref|ZP_12196891.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC032]
gi|421663709|ref|ZP_16103853.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC110]
gi|421667579|ref|ZP_16107645.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC087]
gi|421670373|ref|ZP_16110371.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC099]
gi|400383693|gb|EJP42371.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC032]
gi|408713048|gb|EKL58223.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC110]
gi|410383759|gb|EKP36279.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC087]
gi|410385052|gb|EKP37547.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC099]
Length = 678
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|412341887|ref|YP_006970642.1| DNA ligase [Bordetella bronchiseptica 253]
gi|427815795|ref|ZP_18982859.1| DNA ligase [Bordetella bronchiseptica 1289]
gi|81429836|sp|Q7WCJ7.1|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|408771721|emb|CCJ56525.1| DNA ligase [Bordetella bronchiseptica 253]
gi|410566795|emb|CCN24364.1| DNA ligase [Bordetella bronchiseptica 1289]
Length = 696
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
gi|81425567|sp|Q7W0T4.1|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
Length = 696
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>gi|410421254|ref|YP_006901703.1| DNA ligase [Bordetella bronchiseptica MO149]
gi|427818345|ref|ZP_18985408.1| DNA ligase [Bordetella bronchiseptica D445]
gi|427825793|ref|ZP_18992855.1| DNA ligase [Bordetella bronchiseptica Bbr77]
gi|408448549|emb|CCJ60232.1| DNA ligase [Bordetella bronchiseptica MO149]
gi|410569345|emb|CCN17444.1| DNA ligase [Bordetella bronchiseptica D445]
gi|410591058|emb|CCN06154.1| DNA ligase [Bordetella bronchiseptica Bbr77]
Length = 696
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>gi|417548020|ref|ZP_12199101.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-18]
gi|400388319|gb|EJP51391.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-18]
Length = 669
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|425740353|ref|ZP_18858527.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-487]
gi|425495120|gb|EKU61310.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-487]
Length = 678
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|410693767|ref|YP_003624388.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
Length = 686
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 194 KVYENKPADLIQGQM--DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMED 251
++ E A+L+Q T L+R +AL +R V + L FG L I+DA +E
Sbjct: 503 RMAEKSAANLLQALQASKTTTLARFLYAL-GIRHVGEATAKDLARHFGGLDAILDAPLEQ 561
Query: 252 LARCPGIGERKVKRLYDTFHEPFKRVV 278
L P +G + + F +P R V
Sbjct: 562 LLEVPDVGPVVAQSIRTFFDQPHNREV 588
>gi|213156587|ref|YP_002318248.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB0057]
gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
gi|387125008|ref|YP_006290890.1| NAD-dependent DNA ligase [Acinetobacter baumannii MDR-TJ]
gi|403673231|ref|ZP_10935532.1| DNA ligase [Acinetobacter sp. NCTC 10304]
gi|407931684|ref|YP_006847327.1| DNA ligase [Acinetobacter baumannii TYTH-1]
gi|417572384|ref|ZP_12223238.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC-5]
gi|417576242|ref|ZP_12227087.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-17]
gi|417870615|ref|ZP_12515570.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH1]
gi|417872477|ref|ZP_12517379.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH2]
gi|417876875|ref|ZP_12521624.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH3]
gi|417881678|ref|ZP_12525991.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH4]
gi|421204699|ref|ZP_15661817.1| DNA ligase [Acinetobacter baumannii AC12]
gi|421534728|ref|ZP_15980999.1| DNA ligase [Acinetobacter baumannii AC30]
gi|421621939|ref|ZP_16062850.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC074]
gi|421642461|ref|ZP_16082977.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-235]
gi|421648987|ref|ZP_16089383.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-251]
gi|421650742|ref|ZP_16091115.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC0162]
gi|421686763|ref|ZP_16126507.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-143]
gi|421699273|ref|ZP_16138808.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-58]
gi|421701903|ref|ZP_16141389.1| DNA ligase [Acinetobacter baumannii ZWS1122]
gi|421706233|ref|ZP_16145650.1| DNA ligase [Acinetobacter baumannii ZWS1219]
gi|421793004|ref|ZP_16229142.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-2]
gi|421795150|ref|ZP_16231234.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-21]
gi|421798984|ref|ZP_16234992.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC1]
gi|424053488|ref|ZP_17791020.1| DNA ligase [Acinetobacter baumannii Ab11111]
gi|424062855|ref|ZP_17800340.1| DNA ligase [Acinetobacter baumannii Ab44444]
gi|425747471|ref|ZP_18865474.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-348]
gi|445457703|ref|ZP_21446691.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC047]
gi|221222446|sp|A3M2U3.2|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254778154|sp|B7GZ71.1|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254778155|sp|B7I790.1|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781253|sp|B0V8E4.2|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|342227357|gb|EGT92291.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH1]
gi|342233647|gb|EGT98363.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH2]
gi|342236962|gb|EGU01459.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH3]
gi|342238737|gb|EGU03165.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH4]
gi|385879500|gb|AFI96595.1| DNA ligase, NAD-dependent [Acinetobacter baumannii MDR-TJ]
gi|395569463|gb|EJG30125.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-17]
gi|398325852|gb|EJN42012.1| DNA ligase [Acinetobacter baumannii AC12]
gi|400207952|gb|EJO38922.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC-5]
gi|404567226|gb|EKA72352.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-143]
gi|404571900|gb|EKA76949.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-58]
gi|404667626|gb|EKB35539.1| DNA ligase [Acinetobacter baumannii Ab11111]
gi|404675225|gb|EKB42941.1| DNA ligase [Acinetobacter baumannii Ab44444]
gi|407194390|gb|EKE65531.1| DNA ligase [Acinetobacter baumannii ZWS1219]
gi|407195055|gb|EKE66190.1| DNA ligase [Acinetobacter baumannii ZWS1122]
gi|407900265|gb|AFU37096.1| DNA ligase [Acinetobacter baumannii TYTH-1]
gi|408509507|gb|EKK11178.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC0162]
gi|408513188|gb|EKK14822.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-235]
gi|408514236|gb|EKK15843.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-251]
gi|408696702|gb|EKL42231.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC074]
gi|409987394|gb|EKO43576.1| DNA ligase [Acinetobacter baumannii AC30]
gi|410398264|gb|EKP50486.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-2]
gi|410402037|gb|EKP54166.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-21]
gi|410411195|gb|EKP63075.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC1]
gi|425493389|gb|EKU59621.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-348]
gi|444776320|gb|ELX00366.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC047]
Length = 678
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|441517615|ref|ZP_20999349.1| UvrABC system protein C [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441455489|dbj|GAC57310.1| UvrABC system protein C [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 674
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF-KRV 277
AL + + T L + FGS++ + DA++E +A+ PGIG+ + T HE
Sbjct: 598 ALDGIPGLGATRRTALVTHFGSVARLKDATIEQIAQVPGIGKTTAR----TVHEALGGAA 653
Query: 278 VSSHPPIPETPSQKDVERSS 297
+ P P++P K ER+S
Sbjct: 654 IPDSPESPDSPPTKTPERTS 673
>gi|417564438|ref|ZP_12215312.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC143]
gi|421788209|ref|ZP_16224519.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-82]
gi|445447327|ref|ZP_21443692.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-92]
gi|395556194|gb|EJG22195.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC143]
gi|410403780|gb|EKP55858.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-82]
gi|444759185|gb|ELW83662.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-92]
Length = 678
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|384130757|ref|YP_005513369.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|385236346|ref|YP_005797685.1| NAD-dependent DNA ligase [Acinetobacter baumannii TCDC-AB0715]
gi|416145409|ref|ZP_11600448.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB210]
gi|421628089|ref|ZP_16068875.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC180]
gi|421658990|ref|ZP_16099216.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-83]
gi|425752768|ref|ZP_18870675.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-113]
gi|445402025|ref|ZP_21430498.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-57]
gi|445472685|ref|ZP_21452645.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC338]
gi|445480568|ref|ZP_21455643.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-78]
gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
gi|333366955|gb|EGK48969.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB210]
gi|408708610|gb|EKL53883.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC180]
gi|408708929|gb|EKL54191.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-83]
gi|425498999|gb|EKU65065.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-113]
gi|444769890|gb|ELW94055.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC338]
gi|444771584|gb|ELW95713.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-78]
gi|444782832|gb|ELX06707.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-57]
Length = 669
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|424056746|ref|ZP_17794263.1| DNA ligase [Acinetobacter nosocomialis Ab22222]
gi|407440279|gb|EKF46796.1| DNA ligase [Acinetobacter nosocomialis Ab22222]
Length = 669
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|421809727|ref|ZP_16245560.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC035]
gi|410414087|gb|EKP65894.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC035]
Length = 678
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
gi|421675287|ref|ZP_16115212.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC065]
gi|421677165|ref|ZP_16117058.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC111]
gi|421692891|ref|ZP_16132541.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-116]
gi|404559536|gb|EKA64793.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-116]
gi|410382834|gb|EKP35373.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC065]
gi|410393443|gb|EKP45796.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC111]
Length = 678
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>gi|187924439|ref|YP_001896081.1| NAD-dependent DNA ligase [Burkholderia phytofirmans PsJN]
gi|254781278|sp|B2T5K0.1|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
Length = 688
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 473 IIDQLVEQNLVRTPADLFNIGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 528
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL +R V ++ L FGSL IMDAS+E L +G + ++ F E R V
Sbjct: 529 AL-GIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTV 587
Query: 279 SSH------------PPIPETP 288
PP P+ P
Sbjct: 588 IEQLRAPGKVTWPEGPPAPKAP 609
>gi|410473845|ref|YP_006897126.1| DNA ligase [Bordetella parapertussis Bpp5]
gi|408443955|emb|CCJ50650.1| DNA ligase [Bordetella parapertussis Bpp5]
Length = 696
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
gi|254778156|sp|B2HUJ5.1|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
Length = 673
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 508 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 566
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 567 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 626
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 627 SVSSKTKCVVAGEKAGSKLEKAAKLG 652
>gi|445487625|ref|ZP_21457896.1| DNA ligase (NAD+) [Acinetobacter baumannii AA-014]
gi|444768515|gb|ELW92730.1| DNA ligase (NAD+) [Acinetobacter baumannii AA-014]
Length = 669
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 504 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 562
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 563 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 622
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 623 SVSSKTKCVVAGEKAGSKLEKAAKLG 648
>gi|295676829|ref|YP_003605353.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1002]
gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
Length = 687
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 54/141 (38%), Gaps = 25/141 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+E L +G + ++ F E
Sbjct: 523 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASLEALLEVNDVGPVVAESIHQFFAE 581
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P+ P ++ V T ED
Sbjct: 582 DHNRTVIEQLRAPGRVTWPEGPPAPKAPQGVLAGQTVVLTGTLPNLSRED---------- 631
Query: 321 STVKSALSAAFAKYADKIGKK 341
K L AA AK A + KK
Sbjct: 632 --AKEMLEAAGAKVAGSVSKK 650
>gi|126179364|ref|YP_001047329.1| Hef nuclease [Methanoculleus marisnigri JR1]
gi|125862158|gb|ABN57347.1| helicase domain protein [Methanoculleus marisnigri JR1]
Length = 751
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 218 HALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
+AL + +V L FGSL I+DA E+LA GIGE+ + ++D P++
Sbjct: 694 YALAAFPNVGLKSARLLLEHFGSLKAIVDAEPEELAAVHGIGEKTARAIWDLARRPYR 751
>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
Length = 683
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 518 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 576
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 577 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 636
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 637 SVSSKTKCVVAGEKAGSKLEKAAKLG 662
>gi|238020185|ref|ZP_04600611.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147]
gi|237868579|gb|EEP69583.1| hypothetical protein GCWU000324_00060 [Kingella oralis ATCC 51147]
Length = 619
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
SR+T +L + + L + FG L + AS++DLA+ GI +++Y FH
Sbjct: 561 SRVTSSLNDIDGIGAKRKAALLTRFGGLRGVQAASIDDLAQTDGISRALAEKIYGYFH 618
>gi|307729327|ref|YP_003906551.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1003]
gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
Length = 688
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+E L +G + ++ F E
Sbjct: 523 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIHQFFAE 581
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P+ P ++ V T ED
Sbjct: 582 EHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIVLTGTLPTLSRED---------- 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 --AKEMLEAAGAKVAGSVSKKTD 652
>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
gi|123358676|sp|Q13XB0.1|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
Length = 688
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 473 IIDQLVEQNLVRTPADLFNLGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 528
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL +R V ++ L FGSL IMDAS+E L +G + ++ F E R V
Sbjct: 529 AL-GIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTV 587
Query: 279 SSH------------PPIPETP 288
PP P+ P
Sbjct: 588 IEQLRAPGRVTWPEGPPAPKAP 609
>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
Length = 691
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
LSR +AL +R V ++ L FGSL IMDAS+E L +G + ++ F E
Sbjct: 525 LSRFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 EHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 DAAKEMLEAAGAKVAGSVSKKTD 654
>gi|429097287|ref|ZP_19159393.1| DNA ligase [Cronobacter dublinensis 582]
gi|426283627|emb|CCJ85506.1| DNA ligase [Cronobacter dublinensis 582]
Length = 672
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQNVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTENVGIHWPAPQVVKAEEID 596
>gi|269792621|ref|YP_003317525.1| excinuclease ABC subunit C [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100256|gb|ACZ19243.1| excinuclease ABC, C subunit [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 479
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L + V K L S FGS+ ++ AS+++LA GIGER KR+ D E
Sbjct: 424 LEDIPGVGKAKASQLLSRFGSVRNVASASLDELASMRGIGERLAKRISDHLKE 476
>gi|419801451|ref|ZP_14326678.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK262]
gi|385193665|gb|EIF41022.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK262]
Length = 669
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R AL +R V + + L + F +L + +A +E L + P +GE R+ +HE
Sbjct: 508 LARFIFAL-GIREVGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 566
Query: 273 PFKRVVSSHPPIPETPSQKDVERSSVNE 300
P V + I + + VE V E
Sbjct: 567 P-HNVAVVNDLIAQGVHWETVETKEVTE 593
>gi|7674018|sp|Q9ZFY8.1|DNLJ_THESK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|4235370|gb|AAD13188.1| NAD-dependent DNA ligase [Thermus sp. AK16D]
Length = 674
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL +AL + V + L FG + +++A +EDL G+GE + + +T +
Sbjct: 506 LERLLYAL-GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLKD 564
Query: 273 P-FKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAF 331
P F+ +V K+ E ++ +T V T ++++ R++ VK+ L
Sbjct: 565 PEFRDLVRRLKEAGVEMEAKEREGEALKGLTFV--ITGELSRPREE-----VKALLRRLG 617
Query: 332 AKYADKIGKK 341
AK D + +K
Sbjct: 618 AKVTDSVSRK 627
>gi|94496331|ref|ZP_01302908.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
gi|94424077|gb|EAT09101.1| excinuclease ABC, C subunit [Sphingomonas sp. SKA58]
Length = 637
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG+ + DA++EDLA+ PG+ + +++YD FH
Sbjct: 603 FGTARAVRDAALEDLAKAPGVSKAVAQQVYDFFH 636
>gi|396082327|gb|AFN83937.1| Ercc1-like DNA excision repair protein [Encephalitozoon romaleae
SJ-2008]
Length = 187
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 178 ALYLSLEECGRYLETIKVYENKPADLIQ-GQMDTDYLSRLTHALTSVRSVNKTDVVTLGS 236
L S+EEC RY++ + D+I+ G D + L S VNK+DV +
Sbjct: 95 VLGFSVEECSRYIQGFDAAGRRSIDIIRRGSRDEE------GFLCSFPKVNKSDVQQILK 148
Query: 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275
G+L S E++ R G+G+ K + + + F+
Sbjct: 149 DCGTLQKFFGKSSEEMERIQGLGKSKAEEIIKYLNMQFE 187
>gi|419846348|ref|ZP_14369601.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK2019]
gi|386414088|gb|EIJ28657.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK2019]
Length = 669
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R AL +R V + + L + F +L + +A +E L + P +GE R+ +HE
Sbjct: 508 LARFIFAL-GIREVGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 566
Query: 273 PFKRVVSSHPPIPETPSQKDVERSSVNE 300
P V + I + + VE V E
Sbjct: 567 P-HNVAVVNDLIAQGVHWETVETKEVTE 593
>gi|345429372|ref|YP_004822490.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
Length = 667
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R AL +R V + + L + F +L + +A +E L + P +GE R+ +HE
Sbjct: 508 LARFVFAL-GIREVGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 566
Query: 273 P 273
P
Sbjct: 567 P 567
>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
Length = 691
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 75/197 (38%), Gaps = 37/197 (18%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 475 IIDQLVEQNLVRTPADLFNLGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 530
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
L +R V ++ L FGSL+ IMDA++E+L +G + ++ F E R V
Sbjct: 531 GL-GIRHVGESTAKDLAKHFGSLNPIMDATVEELLEVNDVGPIVAESIHQFFAEEHNRTV 589
Query: 279 SSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSA 326
PP P+ P ++ V + T K
Sbjct: 590 IEQLRAPGKVTWPEGPPAPKAPQGVLAGKTVV------------LTGTLPNLTRDAAKEM 637
Query: 327 LSAAFAKYADKIGKKKN 343
L AA AK A + KK +
Sbjct: 638 LEAAGAKVAGSVSKKTD 654
>gi|392416269|ref|YP_006452874.1| Excinuclease ABC subunit C [Mycobacterium chubuense NBB4]
gi|390616045|gb|AFM17195.1| Excinuclease ABC subunit C [Mycobacterium chubuense NBB4]
Length = 682
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL SVR + + L + FGSL+ + AS+E++ PGIGE + + + P +
Sbjct: 601 ALDSVRGLGEHRRKALVTHFGSLARLKQASVEEITSVPGIGEATARAVLEALGAPVE--- 657
Query: 279 SSHPPIPETPS 289
P E PS
Sbjct: 658 ----PAEEAPS 664
>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
Length = 678
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V + L S + SL +M A E L IGE K + + FHE
Sbjct: 514 LARFIYAL-GIREVGEATAANLASHYASLDAVMAADEESLKAVQDIGEVVAKHVVNFFHE 572
Query: 273 PFKRVV 278
R V
Sbjct: 573 EHNRQV 578
>gi|242279487|ref|YP_002991616.1| excinuclease ABC subunit C [Desulfovibrio salexigens DSM 2638]
gi|242122381|gb|ACS80077.1| excinuclease ABC, C subunit [Desulfovibrio salexigens DSM 2638]
Length = 602
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L FGS+ + +AS+EDL+ GIG+++ ++++D F E
Sbjct: 563 LWDEFGSVQKMKEASVEDLSNVQGIGKKRAQQIFDAFRE 601
>gi|218295128|ref|ZP_03495964.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
gi|218244331|gb|EED10856.1| DNA ligase, NAD-dependent [Thermus aquaticus Y51MC23]
Length = 674
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL +AL + V + L FG + +++A +EDL G+GE + + +T +
Sbjct: 506 LERLLYAL-GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLKD 564
Query: 273 P-FKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAF 331
P F+ +V K+ E ++ +T V T ++++ R++ VK+ L
Sbjct: 565 PEFRDLVRRLKEAGVEMEAKEREGEALKGLTFV--ITGELSRPREE-----VKALLRRLG 617
Query: 332 AKYADKIGKK 341
AK D + +K
Sbjct: 618 AKVTDSVSRK 627
>gi|118591881|ref|ZP_01549276.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614]
gi|118435524|gb|EAV42170.1| excinuclease ABC subunit C [Stappia aggregata IAM 12614]
Length = 659
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L + V T L FG+ + A ++DLA PGI E K +YD FHE
Sbjct: 607 LDEIAGVGPTRKKALLRHFGTAKAVSKAGVDDLAAVPGISEAIAKLVYDHFHE 659
>gi|29654488|ref|NP_820180.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493]
gi|81628906|sp|Q83CD5.1|UVRC_COXBU RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|29541755|gb|AAO90694.1| excinuclease ABC subunit C [Coxiella burnetii RSA 493]
Length = 609
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
Length = 675
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R AL +R V + + L + F +L + +A +E L + P +GE R+ +HE
Sbjct: 516 LARFIFAL-GIREVGEATALNLANHFKTLEALQNADLEALQQVPDVGEVVANRILAFWHE 574
Query: 273 P 273
P
Sbjct: 575 P 575
>gi|161831046|ref|YP_001597046.1| excinuclease ABC subunit C [Coxiella burnetii RSA 331]
gi|189038045|sp|A9NDQ6.1|UVRC_COXBR RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|161762913|gb|ABX78555.1| excinuclease ABC, C subunit [Coxiella burnetii RSA 331]
Length = 609
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>gi|441520909|ref|ZP_21002573.1| DNA ligase [Gordonia sihwensis NBRC 108236]
gi|441459481|dbj|GAC60534.1| DNA ligase [Gordonia sihwensis NBRC 108236]
Length = 702
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L + FG L I +AS+++LA+ G+G + ++D F
Sbjct: 531 LWRVIVAL-SIRHVGPTPARALATAFGDLESIQNASVDELAQVDGLGPTRAASVHDWFAV 589
Query: 273 PFKR 276
+ R
Sbjct: 590 DWHR 593
>gi|153208613|ref|ZP_01946870.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177']
gi|165919012|ref|ZP_02219098.1| excinuclease ABC, C subunit [Coxiella burnetii Q321]
gi|212218610|ref|YP_002305397.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154]
gi|226698346|sp|B6J7K3.1|UVRC_COXB1 RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|120575874|gb|EAX32498.1| excinuclease ABC, C subunit [Coxiella burnetii 'MSU Goat Q177']
gi|165917267|gb|EDR35871.1| excinuclease ABC, C subunit [Coxiella burnetii Q321]
gi|212012872|gb|ACJ20252.1| excinuclease ABC subunit C [Coxiella burnetii CbuK_Q154]
Length = 609
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>gi|11499994|ref|NP_071240.1| DNA repair protein [Archaeoglobus fulgidus DSM 4304]
gi|2650671|gb|AAB91244.1| DNA repair protein, putative [Archaeoglobus fulgidus DSM 4304]
Length = 208
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF 270
LT++ + + L FGS+ I +AS+ +L R GIGE+K + +Y F
Sbjct: 157 LTAIPGIGEKKAEKLLDYFGSIQRIANASIAELKRVDGIGEKKAREIYRFF 207
>gi|407713940|ref|YP_006834505.1| DNA ligase [Burkholderia phenoliruptrix BR3459a]
gi|407236124|gb|AFT86323.1| DNA ligase (NAD+) [Burkholderia phenoliruptrix BR3459a]
Length = 688
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL+ IMDAS+E L +G + ++ F E
Sbjct: 523 LARFIYAL-GIRHVGESTAKDLAKHFGSLNPIMDASVEALLEVNDVGPVVAESIHQFFAE 581
Query: 273 PFKRVVSSH------------PPIPETP 288
R V PP P+ P
Sbjct: 582 EHNRTVIEQLRAPGKVTWPEGPPAPKAP 609
>gi|405982230|ref|ZP_11040554.1| DNA ligase, NAD-dependent [Actinomyces neuii BVS029A5]
gi|404391021|gb|EJZ86087.1| DNA ligase, NAD-dependent [Actinomyces neuii BVS029A5]
Length = 799
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ L S+R + T L S FGS+ + AS+E++A+ G+G + + D F E
Sbjct: 619 LWRVLVGL-SIRHLGPTASRALASHFGSMDALRSASVEEIAQVEGVGAVIAQSVKDWFSE 677
Query: 273 PF 274
P+
Sbjct: 678 PW 679
>gi|262203140|ref|YP_003274348.1| NAD-dependent DNA ligase [Gordonia bronchialis DSM 43247]
gi|262086487|gb|ACY22455.1| DNA ligase, NAD-dependent [Gordonia bronchialis DSM 43247]
Length = 691
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
S+R V T L + FGSL+ I DA +E LA G+G + ++D F + R
Sbjct: 533 SIRHVGPTAARALATEFGSLNAIEDADVEQLAGVEGLGMTLAQSIHDWFAVDWHR 587
>gi|330813705|ref|YP_004357944.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
gi|327486800|gb|AEA81205.1| excinuclease ABC subunit C [Candidatus Pelagibacter sp. IMCC9063]
Length = 259
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 233 TLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
TL + FGS I AS+EDL + GI E K++Y+ FH
Sbjct: 215 TLLNHFGSAKTIEGASLEDLKKVDGISELIAKKIYNYFH 253
>gi|402471057|gb|EJW04985.1| DNA repair protein rad10 [Edhazardia aedis USNM 41457]
Length = 193
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 184 EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSH 243
EE RY T + +NK A+ ++ + + + LTS++SV K DV + +L
Sbjct: 106 EEAARYFSTFESIKNKSAEKLRPKNE----DSVEQFLTSIKSVTKRDVGEIKKCCNNLKD 161
Query: 244 IMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+++ + E + G+G++K L F PF
Sbjct: 162 LINMNAEKMECIEGVGQKKASILRKYFDMPF 192
>gi|154706355|ref|YP_001424631.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111]
gi|189038044|sp|A9KFP2.1|UVRC_COXBN RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|154355641|gb|ABS77103.1| excinuclease ABC subunit C [Coxiella burnetii Dugway 5J108-111]
Length = 609
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>gi|256821456|ref|YP_003145419.1| CheA signal transduction histidine kinase [Kangiella koreensis DSM
16069]
gi|256794995|gb|ACV25651.1| CheA signal transduction histidine kinase [Kangiella koreensis DSM
16069]
Length = 2213
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERK----VKRLYDTFHEPFKRVVSSHPPIPETPSQ 290
G L+H ++ +E LAR P +G + ++R YD HE ++V + H +PE P++
Sbjct: 1501 IGELTHKLEGLVEALARDPRLGNSRWADVLRRSYDQLHEMVEQVRNGH--MPEKPAE 1555
>gi|429083632|ref|ZP_19146667.1| DNA ligase [Cronobacter condimenti 1330]
gi|426547471|emb|CCJ72708.1| DNA ligase [Cronobacter condimenti 1330]
Length = 672
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L ++ AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALIKASIDDLQKVPDVGVVVATHVFNFFEE 566
Query: 273 PFKRVV 278
R V
Sbjct: 567 ESNRTV 572
>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|123753789|sp|Q2SX03.1|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
Length = 691
Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+++L +G + ++ F E
Sbjct: 525 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 AHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 EAAKEMLEAAGAKVAGSVSKKTD 654
>gi|367004441|ref|XP_003686953.1| hypothetical protein TPHA_0I00120 [Tetrapisispora phaffii CBS 4417]
gi|357525256|emb|CCE64519.1| hypothetical protein TPHA_0I00120 [Tetrapisispora phaffii CBS 4417]
Length = 237
Score = 38.1 bits (87), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 140 AILVSQRQKGNPLLKYIRNVRWAFAD------VVCDYLVGQNSCALYLSLEECGRYLETI 193
A+LV+ QK NPLL +++N W + + DYLV Q L+L+L Y + I
Sbjct: 119 AVLVNTTQKDNPLLNHLKNTNWRYTSSKGGQKIYYDYLVRQRPV-LFLTLTYHKLYADYI 177
>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
Length = 691
Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+++L +G + ++ F E
Sbjct: 525 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 AHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 EAAKEMLEAAGAKVAGSVSKKTD 654
>gi|365873514|ref|ZP_09413047.1| DNA ligase, NAD-dependent [Thermanaerovibrio velox DSM 12556]
gi|363983601|gb|EHM09808.1| DNA ligase, NAD-dependent [Thermanaerovibrio velox DSM 12556]
Length = 665
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 180 YLSLEECGR-----YLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
+L L+ GR + ++++ +++P L +L +AL + V + L
Sbjct: 477 WLKLDRMGRKSAENMVRSVEMAKDRP------------LRKLLYAL-GIPGVGERTARDL 523
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276
+ FG+L +M+AS+E+L+ G+G K + D F +P R
Sbjct: 524 AARFGALDAVMNASLEELSSINGVGPVVAKGVVDFFRDPGNR 565
>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
Length = 691
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+++L +G + ++ F E
Sbjct: 525 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 AHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 EAAKEMLEAAGAKVAGSVSKKTD 654
>gi|212212426|ref|YP_002303362.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212]
gi|226698347|sp|B6IZT9.1|UVRC_COXB2 RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
gi|212010836|gb|ACJ18217.1| excinuclease ABC subunit C [Coxiella burnetii CbuG_Q212]
Length = 609
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDDCHQ 606
>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
Length = 691
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+E L +G + ++ F E
Sbjct: 525 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIEALLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 EHNRTVIEQLRAPGRVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 DAAKEMLEAAGAKVAGSVSKKTD 654
>gi|23465283|ref|NP_695886.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705]
gi|384201467|ref|YP_005587214.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
KACC 91563]
gi|419848123|ref|ZP_14371249.1| UvrC Helix-hairpin-helix N-terminal domain protein [Bifidobacterium
longum subsp. longum 1-6B]
gi|419855960|ref|ZP_14378703.1| UvrC Helix-hairpin-helix N-terminal domain protein [Bifidobacterium
longum subsp. longum 44B]
gi|23325919|gb|AAN24522.1| excinuclease ABC subunit C [Bifidobacterium longum NCC2705]
gi|338754474|gb|AEI97463.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
KACC 91563]
gi|386408801|gb|EIJ23693.1| UvrC Helix-hairpin-helix N-terminal domain protein [Bifidobacterium
longum subsp. longum 1-6B]
gi|386414248|gb|EIJ28807.1| UvrC Helix-hairpin-helix N-terminal domain protein [Bifidobacterium
longum subsp. longum 44B]
Length = 788
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L AL + + ++ L + FGS+ + +AS+ED + GIG K + LY+ HE
Sbjct: 731 LRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEALYNALHE 787
>gi|317483281|ref|ZP_07942275.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
gi|316915244|gb|EFV36672.1| excinuclease ABC [Bifidobacterium sp. 12_1_47BFAA]
Length = 768
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L AL + + ++ L + FGS+ + +AS+ED + GIG K + LY+ HE
Sbjct: 711 LRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEALYNALHE 767
>gi|296454218|ref|YP_003661361.1| excinuclease ABC subunit C [Bifidobacterium longum subsp. longum
JDM301]
gi|296183649|gb|ADH00531.1| excinuclease ABC, C subunit [Bifidobacterium longum subsp. longum
JDM301]
Length = 788
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L AL + + ++ L + FGS+ + +AS+ED + GIG K + LY+ HE
Sbjct: 731 LRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEALYNALHE 787
>gi|453076703|ref|ZP_21979473.1| NAD-dependent DNA ligase LigA [Rhodococcus triatomae BKS 15-14]
gi|452760772|gb|EME19097.1| NAD-dependent DNA ligase LigA [Rhodococcus triatomae BKS 15-14]
Length = 689
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L S F SL+ I AS+++LA G+G + + F
Sbjct: 518 LWRVLVAL-SIRHVGPTAARALASEFASLARIEAASVDELAAVDGVGGTIAAAVVEWFAV 576
Query: 273 PFKRVV--------SSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVK 324
+ R + S + ++++E S+ +E T D K +
Sbjct: 577 DWHREIVEKWRAASVSMEDERDESIERNLEGLSIVVTGSLEGFTRDGAKEAILQRGGKAA 636
Query: 325 SALS--AAFAKYADKIGKKKNRSSQVGETSVSNSGTENSNSGQPDS 368
++S AF D G K +++ Q+G + +G G PD+
Sbjct: 637 GSVSKKTAFVVIGDAPGSKADKAEQLGVPILDEAGFVRLLEGGPDA 682
>gi|374339245|ref|YP_005095981.1| NAD-dependent DNA ligase [Marinitoga piezophila KA3]
gi|372100779|gb|AEX84683.1| DNA ligase, NAD-dependent [Marinitoga piezophila KA3]
Length = 666
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ +A+ + +V K L F ++ ++M+A+ ++L GIGE +++YD F +
Sbjct: 506 LDRVLYAI-GIPNVGKKIAKDLAKKFKTIDNLMNANYDELLSIEGIGEDIAQQIYDFFKD 564
Query: 273 P 273
P
Sbjct: 565 P 565
>gi|119367628|sp|Q8G6E0.2|UVRC_BIFLO RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName:
Full=Excinuclease ABC subunit C
Length = 746
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 216 LTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L AL + + ++ L + FGS+ + +AS+ED + GIG K + LY+ HE
Sbjct: 689 LRSALDEIPGIGESYQKRLLNHFGSVKAMREASVEDFEKVKGIGHAKAEALYNALHE 745
>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
Length = 691
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R + L +R V ++ L FGSL+ IMDAS+++L +G + ++ F E
Sbjct: 525 LARFIYGL-GIRHVGESTAKDLAKHFGSLTPIMDASIDELLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P+ P ++ V + T
Sbjct: 584 EHNRTVIEQLRAPGKVTWPEGPPAPKAPQGVLAGKTIV------------LTGTLPNLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 DAAKEMLEAAGAKVAGSVSKKTD 654
>gi|429093254|ref|ZP_19155855.1| DNA ligase [Cronobacter dublinensis 1210]
gi|426741887|emb|CCJ81968.1| DNA ligase [Cronobacter dublinensis 1210]
Length = 672
Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATASGLAAHFGTLEALINASIDDLQNVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTENVGIHWPAPQVVKAEEID 596
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,853,559,370
Number of Sequences: 23463169
Number of extensions: 246930152
Number of successful extensions: 1663789
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 1201
Number of HSP's that attempted gapping in prelim test: 1653707
Number of HSP's gapped (non-prelim): 8027
length of query: 368
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 224
effective length of database: 8,980,499,031
effective search space: 2011631782944
effective search space used: 2011631782944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 77 (34.3 bits)