BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017612
(368 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA98|ERCC1_ARATH DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1
PE=2 SV=1
Length = 410
Score = 308 bits (789), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 198/410 (48%), Positives = 249/410 (60%), Gaps = 86/410 (20%)
Query: 34 MENEEQNNESAKAQPPQNKKK----TIITIPSYQEVINAT---NPPQNLFTPSQSFSQAF 86
M NE+ + E +++ Q +K +I +PSYQEV+ ++ + P +LF PSQSFSQAF
Sbjct: 1 MANEDDDGEKSRSLHQQIARKPKTQIVIGVPSYQEVLESSQTKSTPPSLFKPSQSFSQAF 60
Query: 87 SFIKSSEFYNPPPPPPANPPTTS-----QNPTLSQGGEQNVGTASAS------ASSSQSI 135
+F+KSS+ Y+PPPP A ++ Q P S Q G +S+S + S +
Sbjct: 61 AFVKSSDVYSPPPPSSAAASSSQPSGASQVPHSSSQTHQTDGASSSSTPVATGSVPSNTT 120
Query: 136 QSRNAILVSQRQKGNPLLKYIRNVRWAFADVV---------C-------------DYLVG 173
Q+RNAILVS RQKGNPLLK+IRNV+W F+D++ C DYL
Sbjct: 121 QNRNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYF 180
Query: 174 Q-----------------------------------NSCALY--LSLEECGRYLETIKVY 196
+ + C L S+ EC RYLETIKVY
Sbjct: 181 RIRELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVY 240
Query: 197 ENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCP 256
ENKPADLIQGQMDTDYLSRL H+LTS+R VNK+DVVTLGSTFGSL+HI+DASMEDLARCP
Sbjct: 241 ENKPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCP 300
Query: 257 GIGERKVKRLYDTFHEPFKRVVSSH-----PPIPETPSQKDVERSSVNEVTEVEKDTEDV 311
GIGERKVKRLYDTFHEPFKR SS+ PPIPE P +KDV +S V E E ED
Sbjct: 301 GIGERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDV--NSEEPVEEDEDFVEDS 358
Query: 312 NKRRKK--ETESTVKSALSAAFAKYADKIGKKKNRSSQVGETSVSNSGTE 359
KR+KK E E TVK+ALSA FA+Y+D++ KKK + + T+ S++ T
Sbjct: 359 RKRKKKEPEPEKTVKTALSAVFARYSDRLSKKKEKQKEKDTTTASDAETH 408
>sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1
SV=1
Length = 297
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 59/198 (29%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYL--------------------------- 171
N+I+VS RQ+GNP+LK++RNV W F DV+ DY+
Sbjct: 99 NSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQ 158
Query: 172 -VGQN-----------------------------SCALYLSL--EECGRYLETIKVYENK 199
+G+N C L L+ EE GRYLET K YE K
Sbjct: 159 SLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK 218
Query: 200 PADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIG 259
PADL+ +++ D++SR+T LT+V+SVNKTD TL +TFGSL ++ AS EDLA CPG+G
Sbjct: 219 PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLG 278
Query: 260 ERKVKRLYDTFHEPFKRV 277
+K +RL+D HEPF +V
Sbjct: 279 PQKARRLFDVLHEPFLKV 296
>sp|P07903|ERCC1_MOUSE DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2
SV=2
Length = 298
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 118/226 (52%), Gaps = 65/226 (28%)
Query: 117 GGEQNVGTASASASS---SQSIQS---RNAILVSQRQKGNPLLKYIRNVRWAFADVVCDY 170
G V T S A+ SQ++++ N+I+VS RQ+GNP+LK++RNV W F +V+ DY
Sbjct: 71 GAGATVPTGSEPAAGENPSQTLKTGAKSNSIIVSPRQRGNPVLKFVRNVPWEFGEVIPDY 130
Query: 171 L----------------------------VGQN--------------------------- 175
+ +G+N
Sbjct: 131 VLGQSTCALFLSLRYHNLHPDYIHERLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCI 190
Query: 176 --SCALYL--SLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDV 231
C L L S EE GRYLET K YE KPADL+ +++ ++LSR T LT+V+SVNKTD
Sbjct: 191 LADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLTTVKSVNKTDS 250
Query: 232 VTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
TL +TFGSL + AS EDLA CPG+G +K +RL++ HEPF +V
Sbjct: 251 QTLLATFGSLEQLFTASREDLALCPGLGPQKARRLFEVLHEPFLKV 296
>sp|Q1LZ75|ERCC1_BOVIN DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1
Length = 294
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
Query: 177 CALYLSL--EECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTL 234
C L L+ EE GRYLET K YE KPADL+ +++ D++SR+T LT+V+SVNKTD TL
Sbjct: 190 CTLILAWSPEEAGRYLETYKAYEQKPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTL 249
Query: 235 GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRV 277
+TFGSL ++ AS EDL+ CPG+G +K +RL+D FHEPF +V
Sbjct: 250 LTTFGSLEQLIAASREDLSLCPGLGPQKARRLFDVFHEPFLKV 292
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 40/45 (88%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSL 183
N+I+VS RQ+GNP+L+++RNV W F DV+ DY++GQ++CAL+LSL
Sbjct: 95 NSIIVSPRQRGNPVLRFVRNVPWEFGDVLPDYVLGQSTCALFLSL 139
>sp|Q06182|SWI10_SCHPO Mating-type switching protein swi10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1
Length = 252
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 152 LLKYIRNVRWAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVYENKPADLIQGQMDTD 211
+L + N + + ++V +V Q + L S EE RYLET K YEN LI + TD
Sbjct: 113 ILVDVENHQASIQELVKTSIVNQYTLILAWSSEEAARYLETYKAYENMSPALIMEKPSTD 172
Query: 212 YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
YLS++ LTS+R +NK+D ++L S FGSL + AS ++L + G G KV R +
Sbjct: 173 YLSQVQSFLTSIRGINKSDSLSLLSKFGSLERALVASRDELEQLEGWGPTKVNRFLEAVQ 232
Query: 272 EPF 274
+PF
Sbjct: 233 QPF 235
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 139 NAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLSLE 184
++ILV+ RQKGNPLL ++RNV W + D+V D+++G C+L+LSL+
Sbjct: 41 HSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGTGICSLFLSLK 86
>sp|Q55GG6|ERCC1_DICDI DNA excision repair protein ERCC-1 OS=Dictyostelium discoideum
GN=ercc1 PE=3 SV=1
Length = 514
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 142 LVSQRQKGNPLL-----KYIRNVRWAFADVV----CDYLVGQ-NSCALYLSLE------- 184
L+ R KG L + + FAD+ C+ + + N A+ L
Sbjct: 271 LIQDRIKGLSTLMTNSDSFTLRILLVFADLSDSDNCEQFINELNLIAIKLQFTLIVCWSQ 330
Query: 185 -ECGRYLETIKVYENKPADLIQGQMDTDYL---SRLTHALTSVRSVNKTDVVTLGSTFGS 240
E +YLE K + N+ D I+ + L S+ LTS++SVNKTD TL F +
Sbjct: 331 IEAAKYLEAYKTFNNRAPDPIKARAQPIELGGKSKNEQVLTSIKSVNKTDATTLLKNFQT 390
Query: 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274
+ I L++ PG G KV++ Y+T ++PF
Sbjct: 391 MQQIFTCQKTTLSKLPGFGPVKVQKFYNTINQPF 424
>sp|C4K4K4|DNLJ_HAMD5 DNA ligase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum
(strain 5AT) GN=ligA PE=3 SV=1
Length = 702
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF-H 271
+R +AL +R V +T L FG L + A +E L + P +GE K L D F +
Sbjct: 534 FARFLYAL-GIREVGETTAANLALYFGQLDLLRKADIETLKKVPDVGEVVAKNLVDFFGN 592
Query: 272 EPFKRVVSSHPPIPETPSQKDVER 295
E ++V+S+ + + P + +E+
Sbjct: 593 EHHQQVISALESVLDWPDPEPIEK 616
>sp|C0QVE5|DNLJ_BRAHW DNA ligase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
GN=ligA PE=3 SV=1
Length = 663
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L R +AL +R V +T L F S+ + A+++DL GIGE K +YD H
Sbjct: 503 LKRFIYAL-GIRQVGETTADLLAKYFTSIENFKKATIDDLQNIEGIGEISAKSIYDFLH 560
>sp|Q8R8M9|UVRC_THETN UvrABC system protein C OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uvrC PE=3
SV=1
Length = 617
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
R L +++ + + L FGS+ I AS+E+L + G+ ER K +Y+ FH
Sbjct: 558 RFKTDLLNIKGIGEKRAKVLYEAFGSIEEIKKASLEELKKVKGMNERSAKAVYEYFH 614
>sp|Q5WTF5|UVRC_LEGPL UvrABC system protein C OS=Legionella pneumophila (strain Lens)
GN=uvrC PE=3 SV=1
Length = 618
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+R+ L S+ V L FG L + AS+E++ + GI E+ KR+Y+ FH
Sbjct: 560 TRVESTLESIEGVGAKRRQALLQRFGGLRELAKASLEEICKVQGISEQLAKRIYEHFH 617
>sp|Q2RGY0|DNLJ_MOOTA DNA ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=ligA
PE=3 SV=1
Length = 666
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R+V + L FGSL + A++E+L P IG R + + + F E
Sbjct: 506 LERLIFAL-GIRNVGQRAARVLADHFGSLDKLAAATVEELTALPDIGPRIAENIREFFGE 564
Query: 273 PFKRVV 278
P R V
Sbjct: 565 PRNRAV 570
>sp|A9II69|DNLJ_BORPD DNA ligase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
CCUG 43448) GN=ligA PE=3 SV=1
Length = 697
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 15/181 (8%)
Query: 190 LETIKVYENKPADLIQGQMD---TDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246
L ++ K AD + +D T L RL AL +R V +T + FGS+ IMD
Sbjct: 512 LAALERMGKKSADNLVAAIDRARTPSLGRLLFAL-GIRHVGETTARDVARHFGSIETIMD 570
Query: 247 ASMEDLARCPGIGERKVKRLYDTFHEPFKRVV-------SSHPPIPETPSQKDVERSSVN 299
A E LA P +G + F EP R + H P+PE Q +
Sbjct: 571 ADEEALAGAPDVGPVVAGSIRRFFAEPHNREIIDLLKAQGVH-PVPEAGPQGNTLAGKTF 629
Query: 300 EVTEVEKD-TEDVNKRRKKETESTVKSALS--AAFAKYADKIGKKKNRSSQVGETSVSNS 356
+T + T D R V ++S A+ ++ G K ++ ++G T +
Sbjct: 630 VLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAGEEAGSKLAKAQELGVTVLDED 689
Query: 357 G 357
G
Sbjct: 690 G 690
>sp|C0QSF6|DNLJ_PERMH DNA ligase OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=ligA PE=3 SV=1
Length = 714
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
++RL L +R V K TL + + D S+EDL R P +G +YD FH
Sbjct: 542 INRLITGL-GIRFVGKVTARTLAENINCVEDLKDWSVEDLERLPDVGYVVAHSIYDFFHN 600
Query: 273 P 273
P
Sbjct: 601 P 601
>sp|B1JUF5|DNLJ_BURCC DNA ligase OS=Burkholderia cenocepacia (strain MC0-3) GN=ligA PE=3
SV=1
Length = 691
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|A0K8E8|DNLJ_BURCH DNA ligase OS=Burkholderia cenocepacia (strain HI2424) GN=ligA PE=3
SV=1
Length = 691
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|Q1BHI7|DNLJ_BURCA DNA ligase OS=Burkholderia cenocepacia (strain AU 1054) GN=ligA
PE=3 SV=2
Length = 691
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLIDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|Q39F38|DNLJ_BURS3 DNA ligase OS=Burkholderia sp. (strain 383) GN=ligA PE=3 SV=1
Length = 691
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + L+ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|Q21AW5|UVRC_RHOPB UvrABC system protein C OS=Rhodopseudomonas palustris (strain
BisB18) GN=uvrC PE=3 SV=1
Length = 699
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG+L I AS+ DL + PGI KR++D FH
Sbjct: 662 FGTLKEIERASLGDLGKVPGISAESAKRIFDYFH 695
>sp|A7MKW4|DNLJ_CROS8 DNA ligase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=ligA
PE=3 SV=1
Length = 672
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
+R +AL +R V + L + FG+L +++AS++DL + P +G +++ F E
Sbjct: 508 FARFLYAL-GIREVGEATAAGLAAHFGTLEALINASIDDLQKVPDVGIVVATHVFNFFEE 566
Query: 273 PFKRV--------VSSHPPIPETPSQKDVE 294
R V H P P+ ++++
Sbjct: 567 ESNRAVIRDLTEEVGIHWPAPQVVKAEEID 596
>sp|Q0BE10|DNLJ_BURCM DNA ligase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
GN=ligA PE=3 SV=1
Length = 691
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV------------SSHPPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V + PP P
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPRA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|B1YSH2|DNLJ_BURA4 DNA ligase OS=Burkholderia ambifaria (strain MC40-6) GN=ligA PE=3
SV=1
Length = 691
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|B4ECN6|DNLJ_BURCJ DNA ligase OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=ligA PE=3 SV=1
Length = 691
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL+ IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|A9WTZ3|DNLJ_RENSM DNA ligase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM
20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=ligA
PE=3 SV=1
Length = 758
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L R+ AL S+R V T L + FGS++ I AS +LA G+G L + F E
Sbjct: 578 LWRVLVAL-SIRHVGPTASRALATAFGSMAAIRAASEPELAEVDGVGPTIAAALIEWFAE 636
Query: 273 PFKRVV--SSHPPIPETPSQKD--VERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALS 328
+ R + + ++D V R+ V E N+ + KE +
Sbjct: 637 DWHREIIDAWAADGVRMADERDESVRRTLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSA 696
Query: 329 AAFAKYADKI------GKKKNRSSQVGETSVSNSGTENSNSGQPD 367
+ +K D + G K +++ ++G T + +G E + PD
Sbjct: 697 GSVSKNTDYVVAGENAGTKLDKAEKLGVTVLDEAGFETLLAHGPD 741
>sp|Q3SPL2|UVRC_NITWN UvrABC system protein C OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=uvrC PE=3 SV=2
Length = 689
Score = 39.3 bits (90), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG+L I AS+ DL + PGI +R++D FH
Sbjct: 652 FGTLKEIERASLADLGKVPGISAESARRIFDFFH 685
>sp|A4JF81|DNLJ_BURVG DNA ligase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
GN=ligA PE=3 SV=1
Length = 691
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 29/176 (16%)
Query: 180 YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFG 239
+ +L E R+ E K +N L + + T L+R + L +R V ++ L FG
Sbjct: 496 FATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIYGL-GIRHVGESTAKDLAKHFG 550
Query: 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSH------------PPIPET 287
SL IMDAS+E+L +G + ++ F E R V PP P+
Sbjct: 551 SLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPKA 610
Query: 288 PSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKN 343
P ++ V + T K L AA AK A + KK +
Sbjct: 611 PQGVLAGKTVV------------LTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTD 654
>sp|Q13BM0|UVRC_RHOPS UvrABC system protein C OS=Rhodopseudomonas palustris (strain
BisB5) GN=uvrC PE=3 SV=1
Length = 695
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + + T L FG+L I AS+ DL + PGI +R++D FH
Sbjct: 639 GLQEIPGIGPTRKRALLHHFGTLKEIERASIGDLGKVPGISAESARRIFDFFH 691
>sp|B5YF86|UVRC_DICT6 UvrABC system protein C OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=uvrC PE=3 SV=1
Length = 599
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L + V + + L F +L ++ AS+EDL + PGI E+ +++Y FH+
Sbjct: 545 LDKIPGVGEKRMKILLEAFSTLENLKKASLEDLKKVPGISEKIAEKIYLYFHD 597
>sp|Q7VRX7|DNLJ_BORPE DNA ligase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589
/ NCTC 13251) GN=ligA PE=3 SV=1
Length = 696
Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>sp|B0VU02|DNLJ_ACIBS DNA ligase OS=Acinetobacter baumannii (strain SDF) GN=ligA PE=3
SV=2
Length = 678
Score = 38.9 bits (89), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>sp|Q7W0T4|DNLJ_BORPA DNA ligase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587
/ NCTC 13253) GN=ligA PE=3 SV=1
Length = 696
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>sp|Q7WCJ7|DNLJ_BORBR DNA ligase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC
13252 / RB50) GN=ligA PE=3 SV=1
Length = 696
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL AL +R V +T + FGS+ IMDAS E L P +G + F E
Sbjct: 537 LGRLLFAL-GIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAE 595
Query: 273 PFKR 276
P R
Sbjct: 596 PHNR 599
>sp|B0V8E4|DNLJ_ACIBY DNA ligase OS=Acinetobacter baumannii (strain AYE) GN=ligA PE=3
SV=2
Length = 678
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>sp|A3M2U3|DNLJ_ACIBT DNA ligase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
755) GN=ligA PE=3 SV=2
Length = 678
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>sp|B7I790|DNLJ_ACIB5 DNA ligase OS=Acinetobacter baumannii (strain AB0057) GN=ligA PE=3
SV=1
Length = 678
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>sp|B7GZ71|DNLJ_ACIB3 DNA ligase OS=Acinetobacter baumannii (strain AB307-0294) GN=ligA
PE=3 SV=1
Length = 678
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 513 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 571
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 572 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 631
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 632 SVSSKTKCVVAGEKAGSKLEKAAKLG 657
>sp|Q2J0X3|UVRC_RHOP2 UvrABC system protein C OS=Rhodopseudomonas palustris (strain HaA2)
GN=uvrC PE=3 SV=1
Length = 695
Score = 38.9 bits (89), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG+L I AS+ DL + PGI +R++D FH
Sbjct: 658 FGTLKEIERASLGDLGKVPGISAESARRIFDFFH 691
>sp|B2T5K0|DNLJ_BURPP DNA ligase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
GN=ligA PE=3 SV=1
Length = 688
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 473 IIDQLVEQNLVRTPADLFNIGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 528
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL +R V ++ L FGSL IMDAS+E L +G + ++ F E R V
Sbjct: 529 AL-GIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTV 587
Query: 279 SSH------------PPIPETP 288
PP P+ P
Sbjct: 588 IEQLRAPGKVTWPEGPPAPKAP 609
>sp|B2HUJ5|DNLJ_ACIBC DNA ligase OS=Acinetobacter baumannii (strain ACICU) GN=ligA PE=3
SV=1
Length = 673
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V +T L +TF +L + A++E L + P +G+ + + D F
Sbjct: 508 LARFIYAL-GIRGVGETTARMLANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLA 566
Query: 273 P-----FKRVVSS--HPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKS 325
P R++++ H P P+++ + S +E+ T D + + + V
Sbjct: 567 PHNIEVLDRLIAAGIHWDAPTAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSG 626
Query: 326 ALSA--AFAKYADKIGKKKNRSSQVG 349
++S+ +K G K +++++G
Sbjct: 627 SVSSKTKCVVAGEKAGSKLEKAAKLG 652
>sp|B0JFQ0|UVRC_MICAN UvrABC system protein C OS=Microcystis aeruginosa (strain NIES-843)
GN=uvrC PE=3 SV=1
Length = 625
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 234 LGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
L + F SL +I +AS+E L + GIGE+ K +Y+ FH
Sbjct: 586 LLAHFHSLDYIREASLEQLQQVTGIGEQLAKEIYNYFH 623
>sp|Q13XB0|DNLJ_BURXL DNA ligase OS=Burkholderia xenovorans (strain LB400) GN=ligA PE=3
SV=1
Length = 688
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 167 VCDYLVGQNSCAL--------YLSLEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTH 218
+ D LV QN + +L E R+ E K +N L + + T L+R +
Sbjct: 473 IIDQLVEQNLVRTPADLFNLGFATLAELDRFAE--KSAQNLLDSLEKAKHTT--LARFIY 528
Query: 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278
AL +R V ++ L FGSL IMDAS+E L +G + ++ F E R V
Sbjct: 529 AL-GIRHVGESTAKDLAKHFGSLDPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTV 587
Query: 279 SSH------------PPIPETP 288
PP P+ P
Sbjct: 588 IEQLRAPGRVTWPEGPPAPKAP 609
>sp|Q5ZS74|UVRC_LEGPH UvrABC system protein C OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=uvrC PE=3 SV=1
Length = 618
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+R+ L S+ V L FG L + A +E++ + GI E+ KR+Y+ FH
Sbjct: 560 TRVESTLESIEGVGAKRRQALLQRFGGLRELAKAPLEEICKVQGISEQLAKRIYEHFH 617
>sp|A5IAT1|UVRC_LEGPC UvrABC system protein C OS=Legionella pneumophila (strain Corby)
GN=uvrC PE=3 SV=1
Length = 618
Score = 38.5 bits (88), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
+R+ L S+ V L FG L + A +E++ + GI E+ KR+Y+ FH
Sbjct: 560 TRVESTLESIEGVGTKRRQALLQRFGGLRELAKAPLEEICKVQGINEQLAKRIYEHFH 617
>sp|Q9ZFY8|DNLJ_THESK DNA ligase OS=Thermus sp. (strain AK16D) GN=ligA PE=3 SV=1
Length = 674
Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L RL +AL + V + L FG + +++A +EDL G+GE + + +T +
Sbjct: 506 LERLLYAL-GLPGVGEVLARNLALRFGHMDRLLEAGLEDLLEVEGVGELTARAILNTLKD 564
Query: 273 P-FKRVVSSHPPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETESTVKSALSAAF 331
P F+ +V K+ E ++ +T V T ++++ R++ VK+ L
Sbjct: 565 PEFRDLVRRLKEAGVEMEAKEREGEALKGLTFV--ITGELSRPREE-----VKALLRRLG 617
Query: 332 AKYADKIGKK 341
AK D + +K
Sbjct: 618 AKVTDSVSRK 627
>sp|Q83CD5|UVRC_COXBU UvrABC system protein C OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=uvrC PE=3 SV=1
Length = 609
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|A9NDQ6|UVRC_COXBR UvrABC system protein C OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=uvrC PE=3 SV=1
Length = 609
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|B6J7K3|UVRC_COXB1 UvrABC system protein C OS=Coxiella burnetii (strain CbuK_Q154)
GN=uvrC PE=3 SV=1
Length = 609
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|A9KFP2|UVRC_COXBN UvrABC system protein C OS=Coxiella burnetii (strain Dugway
5J108-111) GN=uvrC PE=3 SV=1
Length = 609
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
R+ L + + L FG L + AS+E++AR PG+ E K +YD H+
Sbjct: 549 RVESTLQEIEGIGPKRRQKLLKYFGGLQELQRASIEEIARVPGVSETLAKAIYDACHQ 606
>sp|Q2SX03|DNLJ_BURTA DNA ligase OS=Burkholderia thailandensis (strain E264 / ATCC 700388
/ DSM 13276 / CIP 106301) GN=ligA PE=3 SV=1
Length = 691
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 213 LSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272
L+R +AL +R V ++ L FGSL IMDAS+++L +G + ++ F E
Sbjct: 525 LARFIYAL-GIRHVGESTAKDLAKHFGSLDPIMDASIDELLEVNDVGPIVAESIHQFFAE 583
Query: 273 PFKRVVSSH------------PPIPETPSQKDVERSSVNEVTEVEKDTEDVNKRRKKETE 320
R V PP P P ++ V + T
Sbjct: 584 AHNRTVIEQLRAKGKVTWPEGPPAPRAPQGVLAGKTVV------------LTGTLPTLTR 631
Query: 321 STVKSALSAAFAKYADKIGKKKN 343
K L AA AK A + KK +
Sbjct: 632 EAAKEMLEAAGAKVAGSVSKKTD 654
>sp|Q6NAL3|UVRC_RHOPA UvrABC system protein C OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=uvrC PE=3 SV=1
Length = 704
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG+L I AS+ DL + PGI KR+++ FH
Sbjct: 667 FGTLKEIERASIADLGKVPGISAESAKRIFEFFH 700
>sp|Q0A8X6|UVRC_ALHEH UvrABC system protein C OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=uvrC PE=3 SV=1
Length = 611
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 238 FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271
FG L + A +EDLAR PGI +++YD +H
Sbjct: 574 FGGLKAVARAGVEDLARTPGISRALAQKVYDHYH 607
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,732,592
Number of Sequences: 539616
Number of extensions: 5879161
Number of successful extensions: 42465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 39204
Number of HSP's gapped (non-prelim): 2810
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)