Query 017612
Match_columns 368
No_of_seqs 219 out of 591
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a1i_A DNA excision repair pro 99.9 6.6E-26 2.2E-30 199.2 5.9 74 134-207 13-145 (146)
2 2bgw_A XPF endonuclease; hydro 99.9 3E-21 1E-25 173.6 15.1 140 136-275 6-219 (219)
3 2a1j_B DNA excision repair pro 99.6 4.7E-15 1.6E-19 118.0 7.1 81 196-276 10-90 (91)
4 1z00_A DNA excision repair pro 99.5 8.2E-15 2.8E-19 115.7 7.7 78 201-278 2-79 (89)
5 1x2i_A HEF helicase/nuclease; 99.4 2.3E-13 7.8E-18 102.5 8.5 70 207-276 3-72 (75)
6 2a1j_A DNA repair endonuclease 99.4 1.9E-13 6.5E-18 103.7 4.7 57 218-276 4-61 (63)
7 1z00_B DNA repair endonuclease 99.2 8E-12 2.7E-16 100.3 4.3 64 211-276 11-75 (84)
8 1kft_A UVRC, excinuclease ABC 99.2 1.6E-11 5.6E-16 94.8 4.0 58 214-271 20-77 (78)
9 3c65_A Uvrabc system protein C 99.1 1.7E-12 6E-17 120.7 -2.1 88 170-271 135-225 (226)
10 2nrt_A Uvrabc system protein C 99.1 3E-11 1E-15 112.1 4.7 87 170-271 130-220 (220)
11 2owo_A DNA ligase; protein-DNA 98.9 7.1E-10 2.4E-14 116.4 3.7 63 212-275 507-569 (671)
12 3c1y_A DNA integrity scanning 98.9 1.6E-09 5.5E-14 107.4 5.6 57 217-273 314-370 (377)
13 4glx_A DNA ligase; inhibitor, 98.8 1.6E-09 5.4E-14 112.3 3.9 64 211-275 506-569 (586)
14 1dgs_A DNA ligase; AMP complex 98.8 2.4E-09 8.3E-14 112.4 4.8 85 190-275 477-564 (667)
15 3sgi_A DNA ligase; HET: DNA AM 98.8 8.7E-10 3E-14 114.9 0.0 78 198-276 507-587 (615)
16 1ixr_A Holliday junction DNA h 98.7 1.2E-08 4.1E-13 92.4 7.1 56 219-274 73-131 (191)
17 1cuk_A RUVA protein; DNA repai 98.7 1.3E-08 4.4E-13 92.8 5.8 57 219-275 74-133 (203)
18 4gfj_A Topoisomerase V; helix- 98.6 1.4E-08 4.9E-13 102.9 3.6 96 161-268 408-517 (685)
19 1vq8_Y 50S ribosomal protein L 98.2 1.5E-07 5.2E-12 88.0 0.0 55 218-272 15-70 (241)
20 2ztd_A Holliday junction ATP-d 98.2 2E-06 6.7E-11 79.3 7.2 59 217-275 87-148 (212)
21 2duy_A Competence protein come 98.2 1.3E-06 4.3E-11 66.9 4.1 49 217-271 26-74 (75)
22 2ziu_A MUS81 protein; helix-ha 97.9 1.5E-05 5.1E-10 75.1 6.0 102 168-273 152-307 (311)
23 2edu_A Kinesin-like protein KI 97.7 3.4E-05 1.1E-09 62.0 4.7 48 217-269 39-89 (98)
24 1wcn_A Transcription elongatio 97.3 0.00035 1.2E-08 54.0 5.4 57 219-275 8-66 (70)
25 2w9m_A Polymerase X; SAXS, DNA 97.0 0.00052 1.8E-08 70.3 5.5 54 217-270 96-151 (578)
26 1b22_A DNA repair protein RAD5 97.0 0.0002 6.7E-09 60.3 1.7 53 219-272 27-80 (114)
27 3arc_U Photosystem II 12 kDa e 96.8 0.0013 4.4E-08 54.1 4.9 50 217-272 25-74 (97)
28 1u9l_A Transcription elongatio 96.8 0.0018 6.2E-08 50.3 5.4 50 222-271 10-60 (70)
29 2zix_A Crossover junction endo 96.7 0.00047 1.6E-08 65.1 1.4 97 177-273 154-303 (307)
30 1s5l_U Photosystem II 12 kDa e 96.6 0.0022 7.4E-08 55.9 5.3 47 217-271 62-110 (134)
31 3b0x_A DNA polymerase beta fam 96.3 0.0036 1.2E-07 63.9 5.5 54 217-270 92-148 (575)
32 2fmp_A DNA polymerase beta; nu 95.9 0.011 3.8E-07 57.0 6.6 50 220-269 59-117 (335)
33 2ihm_A POL MU, DNA polymerase 95.4 0.011 3.8E-07 57.6 4.6 50 220-269 63-121 (360)
34 1jms_A Terminal deoxynucleotid 95.3 0.01 3.4E-07 58.5 3.7 50 220-269 82-140 (381)
35 3arc_U Photosystem II 12 kDa e 95.3 0.008 2.7E-07 49.3 2.4 38 237-276 13-50 (97)
36 2bcq_A DNA polymerase lambda; 95.2 0.017 5.8E-07 55.8 4.9 50 220-269 59-115 (335)
37 2zj8_A DNA helicase, putative 94.7 0.04 1.4E-06 56.4 6.5 53 219-271 647-700 (720)
38 1dgs_A DNA ligase; AMP complex 94.6 0.017 5.9E-07 61.0 3.3 61 212-272 431-497 (667)
39 1s5l_U Photosystem II 12 kDa e 94.4 0.022 7.4E-07 49.7 3.1 38 237-276 50-87 (134)
40 2duy_A Competence protein come 94.3 0.015 5.3E-07 44.0 1.8 28 243-270 20-47 (75)
41 2edu_A Kinesin-like protein KI 93.4 0.14 4.8E-06 40.8 5.9 47 226-274 18-66 (98)
42 2i1q_A DNA repair and recombin 93.3 0.14 4.6E-06 47.3 6.4 54 219-272 4-58 (322)
43 2owo_A DNA ligase; protein-DNA 93.2 0.1 3.5E-06 55.2 6.0 60 213-272 437-502 (671)
44 4e9f_A Methyl-CPG-binding doma 93.1 0.068 2.3E-06 47.0 3.9 48 223-273 78-127 (161)
45 1exn_A 5'-exonuclease, 5'-nucl 92.8 0.1 3.5E-06 49.9 5.0 29 219-247 204-232 (290)
46 4glx_A DNA ligase; inhibitor, 92.7 0.14 4.8E-06 53.4 6.1 61 212-272 436-502 (586)
47 1pzn_A RAD51, DNA repair and r 92.0 0.13 4.6E-06 48.9 4.7 55 219-273 36-91 (349)
48 2i5h_A Hypothetical protein AF 90.1 0.14 5E-06 47.3 2.7 35 219-261 133-173 (205)
49 2w9m_A Polymerase X; SAXS, DNA 90.0 0.18 6E-06 51.7 3.5 50 220-269 59-116 (578)
50 1z3e_B DNA-directed RNA polyme 89.7 0.29 1E-05 38.2 3.8 43 230-272 19-63 (73)
51 2va8_A SSO2462, SKI2-type heli 89.6 0.24 8.2E-06 50.5 4.1 51 219-272 658-709 (715)
52 2csb_A Topoisomerase V, TOP61; 89.6 0.52 1.8E-05 46.3 6.2 53 214-266 407-463 (519)
53 3q8k_A Flap endonuclease 1; he 89.3 0.22 7.5E-06 48.2 3.5 28 220-247 234-261 (341)
54 2i5h_A Hypothetical protein AF 88.8 0.26 8.9E-06 45.6 3.4 31 246-276 128-159 (205)
55 1rxw_A Flap structure-specific 88.7 0.26 8.9E-06 47.0 3.5 28 220-247 237-264 (336)
56 3lda_A DNA repair protein RAD5 88.6 0.52 1.8E-05 46.3 5.7 49 224-272 89-138 (400)
57 2a1j_A DNA repair endonuclease 88.6 0.23 7.8E-06 37.1 2.4 24 249-272 3-26 (63)
58 3k4g_A DNA-directed RNA polyme 88.4 0.41 1.4E-05 38.7 3.9 37 237-273 31-67 (86)
59 2ziu_B Crossover junction endo 87.9 1.8 6.2E-05 41.8 8.8 95 177-271 193-329 (341)
60 2csb_A Topoisomerase V, TOP61; 87.5 0.9 3.1E-05 44.6 6.4 52 223-274 359-435 (519)
61 3gfk_B DNA-directed RNA polyme 87.1 0.38 1.3E-05 38.3 2.9 43 230-272 26-70 (79)
62 3b0x_A DNA polymerase beta fam 87.0 0.34 1.2E-05 49.4 3.3 51 220-270 55-113 (575)
63 1b43_A Protein (FEN-1); nuclea 86.7 0.37 1.3E-05 45.9 3.2 28 220-247 238-266 (340)
64 1pu6_A 3-methyladenine DNA gly 86.4 1 3.5E-05 40.7 5.8 42 229-270 99-141 (218)
65 3im1_A Protein SNU246, PRE-mRN 86.2 0.87 3E-05 43.0 5.4 54 219-272 158-212 (328)
66 2izo_A FEN1, flap structure-sp 85.9 0.31 1.1E-05 46.8 2.2 29 220-248 235-264 (346)
67 1ul1_X Flap endonuclease-1; pr 85.7 0.53 1.8E-05 45.9 3.7 29 219-247 233-261 (379)
68 1coo_A RNA polymerase alpha su 85.2 0.74 2.5E-05 38.0 3.9 37 237-273 43-79 (98)
69 3bzc_A TEX; helix-turn-helix, 85.2 0.61 2.1E-05 50.2 4.3 51 218-272 508-560 (785)
70 2p6r_A Afuhel308 helicase; pro 84.5 0.43 1.5E-05 48.7 2.6 57 219-278 633-690 (702)
71 1kg2_A A/G-specific adenine gl 83.8 0.97 3.3E-05 40.8 4.4 39 231-272 93-132 (225)
72 2h56_A DNA-3-methyladenine gly 83.7 1.4 4.7E-05 40.2 5.3 48 225-272 102-161 (233)
73 2z43_A DNA repair and recombin 83.6 0.22 7.5E-06 46.4 0.0 54 219-272 13-67 (324)
74 1z00_B DNA repair endonuclease 83.4 0.74 2.5E-05 36.5 3.0 24 249-272 17-40 (84)
75 4b21_A Probable DNA-3-methylad 83.2 1.8 6.1E-05 39.7 5.9 60 210-271 58-127 (232)
76 3ory_A Flap endonuclease 1; hy 83.2 0.28 9.5E-06 47.9 0.6 48 220-273 252-300 (363)
77 1z00_A DNA excision repair pro 82.9 0.71 2.4E-05 35.7 2.7 28 245-272 14-41 (89)
78 1x2i_A HEF helicase/nuclease; 79.7 1.2 4.2E-05 32.5 2.9 23 250-272 14-36 (75)
79 4e9f_A Methyl-CPG-binding doma 79.4 1.2 4.1E-05 39.0 3.2 69 204-273 23-98 (161)
80 3psf_A Transcription elongatio 79.2 1.2 4.3E-05 49.2 4.0 54 216-274 715-772 (1030)
81 2a1j_B DNA excision repair pro 79.1 1.2 4.1E-05 34.7 2.8 25 248-272 30-54 (91)
82 2abk_A Endonuclease III; DNA-r 79.0 1.7 5.9E-05 38.7 4.2 28 246-273 105-133 (211)
83 1kft_A UVRC, excinuclease ABC 79.0 0.76 2.6E-05 34.8 1.6 24 249-272 23-46 (78)
84 3qe9_Y Exonuclease 1; exonucle 77.9 3.7 0.00013 39.9 6.4 71 220-290 227-302 (352)
85 3fsp_A A/G-specific adenine gl 77.5 2.5 8.7E-05 40.5 5.1 25 246-270 114-138 (369)
86 1kea_A Possible G-T mismatches 75.5 2.5 8.5E-05 38.1 4.2 79 183-270 50-135 (221)
87 1orn_A Endonuclease III; DNA r 75.0 2.6 8.8E-05 38.2 4.2 53 216-272 76-136 (226)
88 2kz3_A Putative uncharacterize 74.7 3.6 0.00012 32.7 4.5 56 223-278 9-65 (83)
89 2h56_A DNA-3-methyladenine gly 74.4 3.6 0.00012 37.4 5.0 60 210-271 49-116 (233)
90 4ecq_A DNA polymerase ETA; tra 73.6 2.1 7.3E-05 42.2 3.5 52 219-272 254-307 (435)
91 3i0w_A 8-oxoguanine-DNA-glycos 73.3 4.6 0.00016 37.9 5.6 40 233-272 190-234 (290)
92 1v5w_A DMC1, meiotic recombina 73.2 0.7 2.4E-05 43.6 0.0 54 219-272 26-82 (343)
93 3psi_A Transcription elongatio 72.4 2.3 8E-05 47.9 3.9 54 216-274 712-769 (1219)
94 1kea_A Possible G-T mismatches 72.4 4.3 0.00015 36.5 5.0 61 210-271 33-100 (221)
95 2kp7_A Crossover junction endo 72.2 2.3 7.7E-05 34.0 2.7 26 247-272 55-80 (87)
96 1ixr_A Holliday junction DNA h 71.5 2.1 7E-05 38.5 2.6 22 251-272 73-94 (191)
97 2bcq_A DNA polymerase lambda; 71.5 2.4 8.1E-05 40.9 3.2 25 248-272 55-79 (335)
98 1a76_A Flap endonuclease-1 pro 70.9 2.9 9.9E-05 39.6 3.6 25 220-245 226-251 (326)
99 3s6i_A DNA-3-methyladenine gly 70.8 5.7 0.0002 36.1 5.4 59 211-271 49-116 (228)
100 4b21_A Probable DNA-3-methylad 70.3 6.3 0.00022 36.0 5.7 46 225-270 113-170 (232)
101 4gfj_A Topoisomerase V; helix- 69.8 11 0.00037 39.2 7.6 58 217-274 410-492 (685)
102 3maj_A DNA processing chain A; 69.1 3.8 0.00013 40.7 4.2 53 219-272 27-86 (382)
103 3n5n_X A/G-specific adenine DN 68.4 3.8 0.00013 39.0 3.9 37 231-270 112-149 (287)
104 3s6i_A DNA-3-methyladenine gly 67.3 7.5 0.00026 35.3 5.4 45 225-269 102-158 (228)
105 2fmp_A DNA polymerase beta; nu 67.0 3.2 0.00011 39.9 3.1 25 248-272 55-79 (335)
106 2jhn_A ALKA, 3-methyladenine D 66.7 4.9 0.00017 37.7 4.2 46 225-270 179-230 (295)
107 1cuk_A RUVA protein; DNA repai 66.7 2.6 9E-05 38.1 2.3 22 251-272 74-95 (203)
108 2yg9_A DNA-3-methyladenine gly 65.9 5.9 0.0002 35.9 4.5 60 210-271 59-124 (225)
109 3sgi_A DNA ligase; HET: DNA AM 65.8 1.3 4.3E-05 46.7 0.0 53 219-272 459-519 (615)
110 1orn_A Endonuclease III; DNA r 65.5 4.2 0.00014 36.8 3.4 41 231-271 55-98 (226)
111 3fhf_A Mjogg, N-glycosylase/DN 64.5 6.5 0.00022 35.8 4.4 45 226-270 92-145 (214)
112 2yg9_A DNA-3-methyladenine gly 63.9 4.1 0.00014 36.9 3.0 45 225-269 110-165 (225)
113 2q0z_X Protein Pro2281; SEC63, 63.9 8.4 0.00029 36.4 5.3 54 219-272 162-216 (339)
114 1vq8_Y 50S ribosomal protein L 63.3 1.5 5.1E-05 40.9 0.0 26 246-271 11-37 (241)
115 3i0w_A 8-oxoguanine-DNA-glycos 62.8 5.9 0.0002 37.2 4.0 59 210-271 113-189 (290)
116 3vdp_A Recombination protein R 62.7 4.4 0.00015 37.6 3.0 26 212-237 20-45 (212)
117 2ihm_A POL MU, DNA polymerase 62.4 3.8 0.00013 39.9 2.7 25 248-272 59-83 (360)
118 4dez_A POL IV 1, DNA polymeras 62.3 9.3 0.00032 36.2 5.3 52 219-272 179-231 (356)
119 2xhi_A N-glycosylase/DNA lyase 62.3 8.3 0.00028 37.5 5.0 40 233-272 229-276 (360)
120 3n0u_A Probable N-glycosylase/ 62.1 7.6 0.00026 35.4 4.4 46 226-271 98-151 (219)
121 2e1f_A Werner syndrome ATP-dep 62.1 5 0.00017 32.7 2.9 22 245-266 52-73 (103)
122 2ztd_A Holliday junction ATP-d 61.7 4.3 0.00015 37.2 2.8 24 250-273 88-111 (212)
123 2aq4_A DNA repair protein REV1 61.4 4.7 0.00016 39.6 3.2 51 219-271 242-296 (434)
124 4f92_B U5 small nuclear ribonu 58.1 14 0.00049 42.7 6.7 54 219-272 1558-1612(1724)
125 1kg2_A A/G-specific adenine gl 58.0 12 0.00041 33.6 5.0 39 232-271 53-94 (225)
126 1vdd_A Recombination protein R 58.0 5.9 0.0002 37.1 3.0 25 213-237 7-31 (228)
127 2rhf_A DNA helicase RECQ; HRDC 57.7 9.4 0.00032 28.8 3.6 22 245-266 42-63 (77)
128 2abk_A Endonuclease III; DNA-r 57.4 4.1 0.00014 36.2 1.8 61 210-271 27-94 (211)
129 3bzc_A TEX; helix-turn-helix, 57.3 5.9 0.0002 42.7 3.2 31 246-276 504-536 (785)
130 3osn_A DNA polymerase IOTA; ho 56.3 25 0.00087 34.5 7.3 104 220-346 236-340 (420)
131 2jhn_A ALKA, 3-methyladenine D 56.2 10 0.00036 35.4 4.4 61 210-272 116-194 (295)
132 1jms_A Terminal deoxynucleotid 56.1 5.5 0.00019 39.1 2.6 25 248-272 78-102 (381)
133 2xzm_M RPS18E; ribosome, trans 56.0 7.9 0.00027 34.2 3.3 51 215-274 27-77 (155)
134 2kv2_A Bloom syndrome protein; 55.9 8.2 0.00028 29.9 3.1 23 244-266 43-65 (85)
135 3fhg_A Mjogg, N-glycosylase/DN 55.4 7.2 0.00025 34.8 3.0 23 248-270 115-137 (207)
136 3r8n_M 30S ribosomal protein S 54.9 9 0.00031 32.2 3.3 47 215-270 13-59 (114)
137 3psf_A Transcription elongatio 54.6 4.5 0.00015 44.9 1.8 28 248-275 715-745 (1030)
138 1pu6_A 3-methyladenine DNA gly 54.6 13 0.00043 33.5 4.5 42 230-271 51-102 (218)
139 1mpg_A ALKA, 3-methyladenine D 53.7 19 0.00064 33.4 5.6 61 210-272 111-188 (282)
140 1wud_A ATP-dependent DNA helic 53.5 11 0.00039 29.3 3.6 22 245-266 50-71 (89)
141 2bgw_A XPF endonuclease; hydro 52.5 7.8 0.00027 34.3 2.7 49 224-272 119-184 (219)
142 2zix_A Crossover junction endo 51.9 0.83 2.8E-05 43.0 -3.9 36 237-275 223-258 (307)
143 1exn_A 5'-exonuclease, 5'-nucl 51.6 6.1 0.00021 37.7 2.0 33 240-272 193-225 (290)
144 3fsp_A A/G-specific adenine gl 49.5 36 0.0012 32.5 7.0 38 233-271 63-103 (369)
145 3u5c_S 40S ribosomal protein S 48.6 13 0.00045 32.5 3.5 50 215-273 27-76 (146)
146 3iz6_M 40S ribosomal protein S 47.6 13 0.00043 32.8 3.2 50 215-273 25-74 (152)
147 3psi_A Transcription elongatio 47.4 6.8 0.00023 44.2 1.8 28 248-275 712-742 (1219)
148 3gqc_A DNA repair protein REV1 46.7 26 0.00089 35.7 5.8 51 219-271 316-367 (504)
149 1bgx_T TAQ DNA polymerase; DNA 46.3 1.1 3.7E-05 48.4 -4.5 28 220-247 193-220 (832)
150 2rrd_A BLM HRDC domain, HRDC d 46.3 14 0.00048 29.8 3.1 23 244-266 58-80 (101)
151 3n5n_X A/G-specific adenine DN 45.0 15 0.00051 35.0 3.5 39 232-271 72-113 (287)
152 3vdp_A Recombination protein R 44.8 16 0.00053 34.0 3.5 19 250-268 26-44 (212)
153 2nrt_A Uvrabc system protein C 43.7 19 0.00066 33.3 4.0 24 249-272 167-190 (220)
154 2vqe_M 30S ribosomal protein S 43.5 8.2 0.00028 33.0 1.4 25 215-239 14-38 (126)
155 3j20_O 30S ribosomal protein S 42.9 13 0.00044 32.6 2.5 51 215-274 20-70 (148)
156 3bq0_A POL IV, DBH, DNA polyme 42.7 18 0.00061 34.2 3.7 52 219-272 180-232 (354)
157 3fhg_A Mjogg, N-glycosylase/DN 39.6 28 0.00096 30.9 4.3 26 215-240 114-139 (207)
158 1mpg_A ALKA, 3-methyladenine D 39.5 15 0.00052 33.9 2.7 21 249-269 206-226 (282)
159 1vdd_A Recombination protein R 38.9 22 0.00074 33.4 3.5 19 250-268 12-30 (228)
160 2dgz_A Werner syndrome protein 38.5 6.4 0.00022 32.6 -0.1 23 244-266 58-80 (113)
161 3c65_A Uvrabc system protein C 37.6 6.9 0.00024 36.3 0.0 24 249-272 172-195 (226)
162 3lu0_A DNA-directed RNA polyme 37.6 6.9 0.00024 38.1 0.0 37 237-273 274-310 (329)
163 1jx4_A DNA polymerase IV (fami 35.1 19 0.00065 34.0 2.6 52 219-272 179-231 (352)
164 1ci4_A Protein (barrier-TO-aut 33.7 21 0.00071 29.2 2.2 27 242-268 8-36 (89)
165 3mfi_A DNA polymerase ETA; DNA 32.9 34 0.0011 34.9 4.1 52 219-272 308-387 (520)
166 3bqs_A Uncharacterized protein 32.6 16 0.00055 29.4 1.4 22 248-269 2-23 (93)
167 4f4y_A POL IV, DNA polymerase 30.3 22 0.00077 34.0 2.2 51 219-271 180-231 (362)
168 3q8k_A Flap endonuclease 1; he 29.6 21 0.0007 34.4 1.8 30 241-272 225-254 (341)
169 2a6h_A DNA-directed RNA polyme 27.8 13 0.00043 36.0 0.0 36 237-272 273-308 (315)
170 3n0u_A Probable N-glycosylase/ 27.0 47 0.0016 30.2 3.7 27 214-240 125-152 (219)
171 3mab_A Uncharacterized protein 26.5 22 0.00075 28.7 1.2 22 248-269 2-23 (93)
172 1j23_A HEF nuclease, ATP-depen 25.0 30 0.001 29.3 1.8 30 166-199 104-134 (143)
173 2ziu_A MUS81 protein; helix-ha 25.0 37 0.0013 31.5 2.6 26 250-275 237-262 (311)
174 1rxw_A Flap structure-specific 24.4 27 0.00093 33.0 1.6 40 231-272 211-257 (336)
No 1
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=99.92 E-value=6.6e-26 Score=199.24 Aligned_cols=74 Identities=58% Similarity=1.042 Sum_probs=67.7
Q ss_pred cCCCCCeEEEcCCccCChhHHhhhccceEeeecccceEeccceeeeeec-------------------------------
Q 017612 134 SIQSRNAILVSQRQKGNPLLKYIRNVRWAFADVVCDYLVGQNSCALYLS------------------------------- 182 (368)
Q Consensus 134 ~~~~~~~IlVS~rQrGNPLLk~IrnVpwefaDIvpDY~Ig~ttcILFLS------------------------------- 182 (368)
..++++.|+||++|||||||++||||||+|+||+|||+||+++||||||
T Consensus 13 ~~~~~~~IlVs~rQkGNPlL~~irnv~we~~dI~~Dyvvg~~tcvLFLSLkYH~L~PeYI~~Ri~~L~~~y~lrVLL~~V 92 (146)
T 2a1i_A 13 DPAKSNSIIVSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRVLLVQV 92 (146)
T ss_dssp -----CCEEECGGGTTCGGGGGCCSSCEEECCCSSSEEEETTEEEEEEEHHHHHHSTTHHHHHHHHHTTSSSEEEEEEEC
T ss_pred CCCCCceEEECchhcCChHHHHHhcCCeEecCcCCCEEecCeeEEEEEecHHhccCHHHHHHHHHHhccccceEEEEEEE
Confidence 3466889999999999999999999999999999999999999999999
Q ss_pred ----------------------------hhhHHHHHHHHHHhhcCCcchhccc
Q 017612 183 ----------------------------LEECGRYLETIKVYENKPADLIQGQ 207 (368)
Q Consensus 183 ----------------------------~EEAArYIEt~K~~E~K~~d~Irek 207 (368)
.||||+|||+||.||+++++.|+++
T Consensus 93 Dv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle~~k~~e~k~~d~i~~~ 145 (146)
T 2a1i_A 93 DVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQKPADLLMEK 145 (146)
T ss_dssp CSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHHHTCCSSCCCHHHHH
T ss_pred eCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHHHHHhccCChhHhhcC
Confidence 9999999999999999999999875
No 2
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=99.86 E-value=3e-21 Score=173.57 Aligned_cols=140 Identities=19% Similarity=0.333 Sum_probs=121.6
Q ss_pred CCCCeEEEcCCccCChhHHhhhc--cceEeeec-ccceEeccceeee------ee-c-----------------------
Q 017612 136 QSRNAILVSQRQKGNPLLKYIRN--VRWAFADV-VCDYLVGQNSCAL------YL-S----------------------- 182 (368)
Q Consensus 136 ~~~~~IlVS~rQrGNPLLk~Irn--VpwefaDI-vpDY~Ig~ttcIL------FL-S----------------------- 182 (368)
...-.|+|..||+||+|+++|++ |+|++.++ +.||+++...||- |+ |
T Consensus 6 ~~~~~iivD~RE~~s~~~~~l~~~gv~~~~~~L~vgDy~~~~~~~VERKs~~Dl~~Si~~~Rl~~Q~~~l~~~~~~~~ll 85 (219)
T 2bgw_A 6 GGRPRVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLFEQASRLAEHYETVFII 85 (219)
T ss_dssp CSSCEEEEETTTTTSSHHHHHHHTTCEEEEECCSSSSEEEETTEEEEEEEHHHHHHHHHHSHHHHHHHHHHHHCSEEEEE
T ss_pred CCCeEEEEECCCcccHhHHHHHhCCCEEEEEEcCcCCEEeeCCeEEEeCCHHHHHHHhhcCcHHHHHHHHHHhcCCcEEE
Confidence 34568999999999999999977 99999987 8999999977763 33 1
Q ss_pred -------------------------------------hhhHHHHHHHHHHhhcCCcc---hh-cccccccHHHHHHHhhc
Q 017612 183 -------------------------------------LEECGRYLETIKVYENKPAD---LI-QGQMDTDYLSRLTHALT 221 (368)
Q Consensus 183 -------------------------------------~EEAArYIEt~K~~E~K~~d---~I-rek~e~dy~srL~saLT 221 (368)
.+|||+||+.|+.+++.... .+ +++...++.+.+...|+
T Consensus 86 iE~d~~~~~~~~~~~~i~~~l~~~~~~~~~~vi~t~s~~eta~~l~~l~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~L~ 165 (219)
T 2bgw_A 86 VEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALVIESLARLSTREGGQRIVIHKKPRLSDVREWQLYILQ 165 (219)
T ss_dssp EESCSSCGGGTTTHHHHHHHHHHHHHHSCCEEEEESSHHHHHHHHHHHHHHHSCBCCTTCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEecCccccccCCHHHHHHHHHHHHHHCCceEEEcCCHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHh
Confidence 89999999999999865432 22 33455677778888999
Q ss_pred cCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 222 SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 222 sIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
+|||||+++|+.|+++|||+++|++|+.++|..|+|||+++|++|+++|+.+|.
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~~~ 219 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTPYK 219 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSCCC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999999999884
No 3
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=99.56 E-value=4.7e-15 Score=117.97 Aligned_cols=81 Identities=52% Similarity=0.889 Sum_probs=75.4
Q ss_pred hhcCCcchhcccccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 196 YENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 196 ~E~K~~d~Irek~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
..+.+++.|+++...++..++...|++|||||++.|+.|+++||++++|+.|+.++|..|+|||+++|++|+++|+.+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~~~~ 89 (91)
T 2a1j_B 10 HSQDPADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFL 89 (91)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSCSC
T ss_pred cccCCHHHHhhhccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhhhhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 017612 276 R 276 (368)
Q Consensus 276 ~ 276 (368)
.
T Consensus 90 ~ 90 (91)
T 2a1j_B 90 K 90 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=99.55 E-value=8.2e-15 Score=115.74 Aligned_cols=78 Identities=54% Similarity=0.901 Sum_probs=73.9
Q ss_pred cchhcccccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccccC
Q 017612 201 ADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278 (368)
Q Consensus 201 ~d~Irek~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~~~ 278 (368)
++.|+++...+|..++...|++|||||++.|+.|+++||++++|+.|+.++|..|+|||+++|++|+.+|+.+|....
T Consensus 2 ~~~i~~~~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~~~~~~ 79 (89)
T 1z00_A 2 ADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPFLKVP 79 (89)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSCSSSCS
T ss_pred chHhhhcccccHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHhccch
Confidence 467888888999999999999999999999999999999999999999999999999999999999999999998544
No 5
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=99.45 E-value=2.3e-13 Score=102.45 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=63.7
Q ss_pred cccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccc
Q 017612 207 QMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276 (368)
Q Consensus 207 k~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~ 276 (368)
+...+....+...|++|||||...|..|+++||++.+|+.|+.++|..|+|||+++|..|+.+|+.+|..
T Consensus 3 ~~~~~~~~~~~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~~~~ 72 (75)
T 1x2i_A 3 KKALTLAERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAPYIE 72 (75)
T ss_dssp --CCCHHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSCCCC
T ss_pred CCcccHHHHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCcccc
Confidence 3445667778889999999999999999999999999999999999999999999999999999999875
No 6
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=99.39 E-value=1.9e-13 Score=103.66 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=54.5
Q ss_pred HhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHH-HHHHHHHhcccccc
Q 017612 218 HALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERK-VKRLYDTFHEPFKR 276 (368)
Q Consensus 218 saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kK-A~rI~e~F~ePF~~ 276 (368)
+.|+.|||||+++++.||+||||+++|.+||.|||+.| ||.++ |++|+++||.+|..
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~~~~~ 61 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTSFAE 61 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHCCCCC
T ss_pred hHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhccccc
Confidence 57889999999999999999999999999999999999 99999 99999999998874
No 7
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=99.20 E-value=8e-12 Score=100.31 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=59.0
Q ss_pred cHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHH-HHHHHHHhcccccc
Q 017612 211 DYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERK-VKRLYDTFHEPFKR 276 (368)
Q Consensus 211 dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kK-A~rI~e~F~ePF~~ 276 (368)
.|.....+.|..|||||++.++.||.+|||+++|.+||.+||..| ||... |+.|+++||.+|..
T Consensus 11 ~~N~~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~~~~~ 75 (84)
T 1z00_B 11 KYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTSFAE 75 (84)
T ss_dssp TSCHHHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTSBHHH
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHhhhhh
Confidence 355667889999999999999999999999999999999999999 99999 99999999988763
No 8
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=99.16 E-value=1.6e-11 Score=94.84 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=53.3
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 214 srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
..+...|..|||||++.|+.|+++||++++|+.|+.++|..|+|||+++|.+|+++|+
T Consensus 20 ~~~~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 20 HMNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp ---CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999999999999999999999999999999999999986
No 9
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=99.15 E-value=1.7e-12 Score=120.65 Aligned_cols=88 Identities=20% Similarity=0.364 Sum_probs=17.6
Q ss_pred eEeccceeeeeec---hhhHHHHHHHHHHhhcCCcchhcccccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHc
Q 017612 170 YLVGQNSCALYLS---LEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246 (368)
Q Consensus 170 Y~Ig~ttcILFLS---~EEAArYIEt~K~~E~K~~d~Irek~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~ 246 (368)
+.+..++.+|+|= .+||+||-.+|++.. +. ...+.+.|++|||||++.++.||++|||+++|++
T Consensus 135 ~~l~~~s~~l~llq~irDEaHRFAIt~hr~~---------r~----k~~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~ 201 (226)
T 3c65_A 135 VPLDRQSQEFYLLQRIQDEVHRFAVMFHRKT---------RQ----KTMFHSVLDDIPGVGEKRKKALLNYFGSVKKMKE 201 (226)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHTTC------------------------------------------------------
T ss_pred EecCCCCHHHhhhhhccchhhhhhhhccccc---------cc----cccccccccccCCCCHHHHHHHHHHhCCHHHHHh
Confidence 5556666666664 999999999998732 11 2235778999999999999999999999999999
Q ss_pred CCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 247 ASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 247 AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
|+.|||..| |||+++|+.|+++|+
T Consensus 202 As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 202 ATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp -------------------------
T ss_pred CCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 999999999 999999999999996
No 10
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=99.12 E-value=3e-11 Score=112.10 Aligned_cols=87 Identities=25% Similarity=0.329 Sum_probs=74.5
Q ss_pred eEeccceeeeeec---hhhHHHHHHHHHHhhcCCcchhcccccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHc
Q 017612 170 YLVGQNSCALYLS---LEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMD 246 (368)
Q Consensus 170 Y~Ig~ttcILFLS---~EEAArYIEt~K~~E~K~~d~Irek~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~ 246 (368)
+.+..++.+|+|= .+||+||-.+|++.. + ....+.+.|++|||||++.++.||++|||+++|++
T Consensus 130 ~~l~~~s~~l~llq~iRDEaHRFAIt~hr~~---------R----~k~~~~s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~ 196 (220)
T 2nrt_A 130 IHLPHDHPVLRLLVQIRDETHRFAVSYHRKR---------R----EKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRS 196 (220)
T ss_dssp ECCCTTCHHHHHHHHHHHHHHHHHHGGGHHH---------H----HHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHT
T ss_pred eecCCCCHHHHhhhhhcchhhhccccccccc---------c----ccccccccccCCCCcCHHHHHHHHHHcCCHHHHHh
Confidence 6666677776664 999999999998742 1 13346789999999999999999999999999999
Q ss_pred CCHHhhhcCCCCCH-HHHHHHHHHhc
Q 017612 247 ASMEDLARCPGIGE-RKVKRLYDTFH 271 (368)
Q Consensus 247 AS~EELa~VPGIG~-kKA~rI~e~F~ 271 (368)
|+.|||..| ||+ ++|+.|+++|+
T Consensus 197 As~EeL~~V--IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 197 ASLEEIARV--IGSTEIARRVLDILG 220 (220)
T ss_dssp SCHHHHHHH--HTCHHHHHHHHHHC-
T ss_pred CCHHHHHHH--hChHHHHHHHHHHhC
Confidence 999999999 999 99999999984
No 11
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=98.87 E-value=7.1e-10 Score=116.42 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=59.5
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 212 YLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 212 y~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
.+.+++.+| +|||||++.|+.|+.||||+++|+.|+.+||..|+|||+++|++|+++|+.+.+
T Consensus 507 ~l~R~L~al-gi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~~~ 569 (671)
T 2owo_A 507 TFARFLYAL-GIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 (671)
T ss_dssp CHHHHHHHT-TCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred Chhheehhh-cccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhHHH
Confidence 457888898 899999999999999999999999999999999999999999999999998764
No 12
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=98.86 E-value=1.6e-09 Score=107.38 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=53.6
Q ss_pred HHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 217 THALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
...|.+||+||+..|++|+++|||+++|++||.+||..|+|||+++|++|++.|.+-
T Consensus 314 yRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 314 YRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSL 370 (377)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999999999999999999999999999753
No 13
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=98.81 E-value=1.6e-09 Score=112.28 Aligned_cols=64 Identities=27% Similarity=0.445 Sum_probs=60.4
Q ss_pred cHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 211 DYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 211 dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
..+.+++.+| +||+||.+.|+.|+.+|||+++|++|+.+||..|+|||++.|+.|+++|+.+.+
T Consensus 506 ~~l~r~l~aL-GI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~n 569 (586)
T 4glx_A 506 TTFARFLYAL-GIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESN 569 (586)
T ss_dssp CCHHHHHHHT-TCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHHH
T ss_pred CCHHHHHHHc-CCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHHHHHHHcCHHH
Confidence 4568999999 899999999999999999999999999999999999999999999999988754
No 14
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=98.80 E-value=2.4e-09 Score=112.37 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCcchhccc---ccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHH
Q 017612 190 LETIKVYENKPADLIQGQ---MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 190 IEt~K~~E~K~~d~Irek---~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI 266 (368)
|..+..+..|....|... .....+.+++.+| +|||||++.|+.|+.+|||+++|+.|+.++|..|+|||+++|++|
T Consensus 477 L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~al-GI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~A~sI 555 (667)
T 1dgs_A 477 LLGLERMGEKSAQNLLRQIEESKHRGLERLLYAL-GLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAI 555 (667)
T ss_dssp HHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHT-TCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHhcCcHHHhhHhh-ccCCccHHHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHHHHHH
Confidence 333444555555444331 1123357888888 899999999999999999999999999999999999999999999
Q ss_pred HHHhccccc
Q 017612 267 YDTFHEPFK 275 (368)
Q Consensus 267 ~e~F~ePF~ 275 (368)
+++|+.+++
T Consensus 556 ~~ff~~~~~ 564 (667)
T 1dgs_A 556 LETLKDPAF 564 (667)
T ss_dssp HHHHHCHHH
T ss_pred HHHHhhHHH
Confidence 999998874
No 15
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=98.76 E-value=8.7e-10 Score=114.85 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred cCCcchhccc---ccccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 198 NKPADLIQGQ---MDTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 198 ~K~~d~Irek---~e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
.|.+..|... .....+.+++.+| +|||||.+.|+.|+++|||+++|+.|+.+||..|+|||++.|++|+++|+.+.
T Consensus 507 ~ksa~nLl~aIe~sk~~~l~r~L~aL-GIp~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 585 (615)
T 3sgi_A 507 SANGKRLLVNLDKAKAAPLWRVLVAL-SIRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDW 585 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHc-CCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHH
Confidence 4555544432 2234578999999 89999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 017612 275 KR 276 (368)
Q Consensus 275 ~~ 276 (368)
+.
T Consensus 586 n~ 587 (615)
T 3sgi_A 586 HR 587 (615)
T ss_dssp --
T ss_pred HH
Confidence 64
No 16
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=98.75 E-value=1.2e-08 Score=92.36 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=53.6
Q ss_pred hhccCCCCCHHHHHHHHHhcCC---HHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGS---LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGS---Lk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
.|.+|+|||++.|..||++||+ ++.|.+++.++|.+|||||+++|++|+..|+..+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k~ 131 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGKV 131 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999 9999999999999999999999999999998766
No 17
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=98.70 E-value=1.3e-08 Score=92.84 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=54.0
Q ss_pred hhccCCCCCHHHHHHHHHhcCC---HHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGS---LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGS---Lk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
.|.+|+|||++.|..||++||+ ++.|.+++.++|.+|||||+++|++|+..|+..+.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~kl~ 133 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFK 133 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGG
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhh
Confidence 6778999999999999999999 99999999999999999999999999999987764
No 18
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=98.61 E-value=1.4e-08 Score=102.95 Aligned_cols=96 Identities=16% Similarity=0.229 Sum_probs=68.9
Q ss_pred eEeeecccceEeccceeeeeechhhHHHHHHHHHHh----hc----CC------cchhcccccccHHHHHHHhhccCCCC
Q 017612 161 WAFADVVCDYLVGQNSCALYLSLEECGRYLETIKVY----EN----KP------ADLIQGQMDTDYLSRLTHALTSVRSV 226 (368)
Q Consensus 161 wefaDIvpDY~Ig~ttcILFLS~EEAArYIEt~K~~----E~----K~------~d~Irek~e~dy~srL~saLTsIpgV 226 (368)
...+.+..||.+| +|+|..++++..+ ++ .. ..-|.++....... ....|++|+||
T Consensus 408 iqLASLAvkfG~g----------~eTAe~L~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~e-qeamLtAIaGI 476 (685)
T 4gfj_A 408 IQLAELTKKEGVG----------RKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVP-GYASLISIRGI 476 (685)
T ss_dssp HHHHHHHTSTTCC----------HHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHST-THHHHHTSTTC
T ss_pred hhhhhhhhhcCCc----------hHHHHHHHHHhcchhhhhhhhhhhhhhcccccccchhhhhccccc-ceeeeeccCCC
Confidence 3345678899886 5666666655544 22 11 12222222222111 26789999999
Q ss_pred CHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHH
Q 017612 227 NKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYD 268 (368)
Q Consensus 227 nKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e 268 (368)
|+..|++||++|||++.|++|+.+||.. .|||+++|++|.-
T Consensus 477 Gp~tAeRLLEkFGSVe~Vm~AteDELRe-dGIGekqarrI~g 517 (685)
T 4gfj_A 477 DRERAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIRELKG 517 (685)
T ss_dssp CHHHHHHHHHHHTSHHHHHHSCHHHHHH-TTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHhcCHHHHHhCCHHHHHH-ccccHHHHHHHhh
Confidence 9999999999999999999999999955 9999999999953
No 19
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=98.22 E-value=1.5e-07 Score=87.98 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HhhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 218 HALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 218 saLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..|..|+|||++.|..|+.+ |+|+++|..|+.++|..++|||+++|++|++.++.
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp --------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 36778999999999999999 99999999999999999999999999999999864
No 20
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=98.21 E-value=2e-06 Score=79.27 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=53.8
Q ss_pred HHhhccCCCCCHHHHHHHHHhcCC---HHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 217 THALTSVRSVNKTDVVTLGSTFGS---LSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~FGS---Lk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
...|.+|+|||++.|.+||++||. ...|+..+.+.|.+|||||+|+|++|..-+...+.
T Consensus 87 f~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl~ 148 (212)
T 2ztd_A 87 FLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVG 148 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTCC
T ss_pred HHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhc
Confidence 344667999999999999999999 77899999999999999999999999999988774
No 21
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=98.17 E-value=1.3e-06 Score=66.88 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 217 THALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
...|..|+|||+..|.+|+++| .-++.+||..|+|||++++++|+.+|+
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r------~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR------PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC------CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred HHHHHhCCCCCHHHHHHHHHHc------ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 4467889999999999999998 358999999999999999999998874
No 22
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=97.86 E-value=1.5e-05 Score=75.13 Aligned_cols=102 Identities=13% Similarity=0.184 Sum_probs=75.9
Q ss_pred cceEeccceeeeee-chhhHHHHHHHHHHhhc-----CCc----c-h------h----------------------cccc
Q 017612 168 CDYLVGQNSCALYL-SLEECGRYLETIKVYEN-----KPA----D-L------I----------------------QGQM 208 (368)
Q Consensus 168 pDY~Ig~ttcILFL-S~EEAArYIEt~K~~E~-----K~~----d-~------I----------------------rek~ 208 (368)
.+|.+ .|+|+ +.+|+|+||..|+.... ++. + . + .+..
T Consensus 152 v~~g~----~Vi~t~s~~eTa~~l~~lt~~i~~~y~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~~ 227 (311)
T 2ziu_A 152 VVDGF----FVKRVQDAKESAAYLTIMTRYLQKLYQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTEFNYGAIKNK 227 (311)
T ss_dssp HTTCC----EEEECSSHHHHHHHHHHHHHHHHHTTTTCCBCCC----------------CCSCSCCEEHHHHHHHHHHHT
T ss_pred hhcCe----EEEEeCCHHHHHHHHHHHHHHHHHHhccccccccCcchhccccccccccccCcccccccHHHHHHhccccc
Confidence 45555 78888 49999999999997543 110 0 0 0 0112
Q ss_pred cccHHHHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHH-----h----hhcCC-C-----CCHHHHHHHHHHhccc
Q 017612 209 DTDYLSRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASME-----D----LARCP-G-----IGERKVKRLYDTFHEP 273 (368)
Q Consensus 209 e~dy~srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~E-----E----La~VP-G-----IG~kKA~rI~e~F~eP 273 (368)
..++.+.....|.+||||+...|..|+++|+|+..|++|-.+ | |+.+. | ||+..+++|+++|+..
T Consensus 228 ~~t~~e~~~~mL~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~f~~~ 307 (311)
T 2ziu_A 228 CQTVREVFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQLYCTR 307 (311)
T ss_dssp CCBHHHHHHHHHTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhccCCCHHHHHHHHHHCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHhccC
Confidence 234455667889999999999999999999999999998643 2 77774 3 9999999999999753
No 23
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.69 E-value=3.4e-05 Score=62.02 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=42.6
Q ss_pred HHhhccCCCCCHHHHHHHHHhc---CCHHHHHcCCHHhhhcCCCCCHHHHHHHHHH
Q 017612 217 THALTSVRSVNKTDVVTLGSTF---GSLSHIMDASMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~F---GSLk~I~~AS~EELa~VPGIG~kKA~rI~e~ 269 (368)
...|..|+|||+..|..|+++| |.+ ++.+||..|+|||++++++|++.
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f-----~s~edL~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPF-----SQVEDLERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCC-----SSGGGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCc-----CCHHHHHhCCCCCHHHHHHHHHC
Confidence 3457789999999999999998 565 78899999999999999999875
No 24
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.28 E-value=0.00035 Score=54.03 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=51.5
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc-ccc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE-PFK 275 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e-PF~ 275 (368)
-|..++|||..++..|.. -|.|+++|..++.++|..+.||++.+|.+|...-+. +|.
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHccCc
Confidence 456788999999999998 599999999999999999999999999999988876 544
No 25
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=97.04 E-value=0.00052 Score=70.27 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=46.9
Q ss_pred HHhhccCCCCCHHHHHHHHHh-cCCHHHHHcC-CHHhhhcCCCCCHHHHHHHHHHh
Q 017612 217 THALTSVRSVNKTDVVTLGST-FGSLSHIMDA-SMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~-FGSLk~I~~A-S~EELa~VPGIG~kKA~rI~e~F 270 (368)
...|.+|+|||++.|..|++. |.|+++|..| ....|..+||||+|.|++|...+
T Consensus 96 ~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l 151 (578)
T 2w9m_A 96 LLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENV 151 (578)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHH
Confidence 345679999999999999997 8999999987 45689999999999999995555
No 26
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=97.01 E-value=0.0002 Score=60.33 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=47.5
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..+ |||..++.+|... |.|++.|..|+.++|..++|||+.||.+|.+..++
T Consensus 27 ~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~k 80 (114)
T 1b22_A 27 RLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 80 (114)
T ss_dssp HHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred HHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 34344 9999999999985 99999999999999999999999999999988754
No 27
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.80 E-value=0.0013 Score=54.05 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=41.7
Q ss_pred HHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 217 THALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...|..|||||++.|.+|+.+ |-+ .+.+||.+|+|||+++.++|..++..
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~~-GpF-----~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVKN-APY-----ESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHHH-CCC-----SSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred HHHHhHCCCCCHHHHHHHHHc-CCC-----CCHHHHHhccCCCHHHHHHHHHHhce
Confidence 357889999999999999994 332 35579999999999999999998754
No 28
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.79 E-value=0.0018 Score=50.26 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=45.5
Q ss_pred cCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 222 SVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 222 sIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.+.||+..++..|.. =|.|++.|..++.++|..|+||.+.+|..|++.-+
T Consensus 10 ~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 10 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 344999999999998 59999999999999999999999999999987654
No 29
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=96.65 E-value=0.00047 Score=65.14 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=71.7
Q ss_pred eeeeec-hhhHHHHHHHHHHhhcCC-----c---------c-------------hhc---------cc-ccccHHHHHHH
Q 017612 177 CALYLS-LEECGRYLETIKVYENKP-----A---------D-------------LIQ---------GQ-MDTDYLSRLTH 218 (368)
Q Consensus 177 cILFLS-~EEAArYIEt~K~~E~K~-----~---------d-------------~Ir---------ek-~e~dy~srL~s 218 (368)
.|+|++ .+|+|+||..|+.....- . . .+. .+ ...+..+....
T Consensus 154 ~i~~t~~~~~Ta~~l~~lt~~l~e~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~f~~~~~Ks~~~tv~~v~~~ 233 (307)
T 2zix_A 154 FVKRTADIKESAAYLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPLCSLLTFSDFNAGAIKNKAQSVREVFAR 233 (307)
T ss_dssp CCCBCCSHHHHTHHHHHHHTTTTTSSCSSCCCCCC----------------CCCCSCCSSTTTTGGGTTTSCCTTTHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhhhhccccCcccccccHHHHHHhhccccCCcHHHHHHH
Confidence 677774 999999999999875531 0 0 000 00 11223344577
Q ss_pred hhccCCCCCHHHHHHHHHhcCCHHHHHcCCHH-----h----hhcCC-C-----CCHHHHHHHHHHhccc
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASME-----D----LARCP-G-----IGERKVKRLYDTFHEP 273 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~E-----E----La~VP-G-----IG~kKA~rI~e~F~eP 273 (368)
.|..||||+...|..|+++|.|+..++.|-.+ | |+.+. | ||+..+++|+++|+..
T Consensus 234 ~L~~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~f~~~ 303 (307)
T 2zix_A 234 QLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCSY 303 (307)
T ss_dssp TTTCSTTCCSTTTTTSSSSSCSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHHHTCS
T ss_pred HHHhccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHHHccC
Confidence 88899999999999999999999999988653 2 76663 2 9999999999999753
No 30
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.63 E-value=0.0022 Score=55.95 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=39.0
Q ss_pred HHhhccCCCCCHHHHHHHHHh--cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 217 THALTSVRSVNKTDVVTLGST--FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~--FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
...|..+||||++.|..+++| |.| .|||.+|+|||+++.+.|.+...
T Consensus 62 ~~eL~~LpGiGp~~A~~II~~GpF~s--------vedL~~V~GIg~k~~e~l~~~~~ 110 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIVKNAPYES--------VEDVLNIPGLTERQKQILRENLE 110 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHHHTCCCSS--------GGGGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHcCCCCC--------HHHHHhCCCCCHHHHHHHHHhhc
Confidence 456778999999999999976 554 47999999999998888876654
No 31
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.31 E-value=0.0036 Score=63.86 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=46.1
Q ss_pred HHhhccCCCCCHHHHHHHHHh--cCCHHHHHcCC-HHhhhcCCCCCHHHHHHHHHHh
Q 017612 217 THALTSVRSVNKTDVVTLGST--FGSLSHIMDAS-MEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~--FGSLk~I~~AS-~EELa~VPGIG~kKA~rI~e~F 270 (368)
...|.+|+|||++.|..|+.. +.|+++|..|- .++|..+||||+|.|++|..-+
T Consensus 92 ~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l 148 (575)
T 3b0x_A 92 VLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGL 148 (575)
T ss_dssp HHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHH
Confidence 345669999999999999996 79999999874 4679999999999999995544
No 32
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=95.92 E-value=0.011 Score=57.04 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=39.2
Q ss_pred hccCCCCCHHHHHHHHHh--cCCHHHHHc-------CCHHhhhcCCCCCHHHHHHHHHH
Q 017612 220 LTSVRSVNKTDVVTLGST--FGSLSHIMD-------ASMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--FGSLk~I~~-------AS~EELa~VPGIG~kKA~rI~e~ 269 (368)
|+.|||||+..|..+.+- =|.++.+-. .+..+|.+|+|||+++|++|++-
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 789999999999877653 355544332 35678999999999999999874
No 33
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=95.43 E-value=0.011 Score=57.62 Aligned_cols=50 Identities=14% Similarity=0.318 Sum_probs=39.4
Q ss_pred hccCCCCCHHHHHHHHHh--cCCHHHHHcC-------CHHhhhcCCCCCHHHHHHHHHH
Q 017612 220 LTSVRSVNKTDVVTLGST--FGSLSHIMDA-------SMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--FGSLk~I~~A-------S~EELa~VPGIG~kKA~rI~e~ 269 (368)
|+.|||||+..|..+.+- -|.++.+-.. ...+|.+|+|||+++|++|++-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 889999999999887652 4666555432 3468999999999999999875
No 34
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=95.28 E-value=0.01 Score=58.53 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=39.2
Q ss_pred hccCCCCCHHHHHHHHHh--cCCHHHHHcC-------CHHhhhcCCCCCHHHHHHHHHH
Q 017612 220 LTSVRSVNKTDVVTLGST--FGSLSHIMDA-------SMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--FGSLk~I~~A-------S~EELa~VPGIG~kKA~rI~e~ 269 (368)
|..|||||+..|..+.+- -|.++.+-.. ...+|.+|+|||+++|++||+.
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 889999999999887652 4666554432 3458999999999999999875
No 35
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=95.25 E-value=0.008 Score=49.35 Aligned_cols=38 Identities=11% Similarity=0.331 Sum_probs=32.0
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~ 276 (368)
.++..=+|=.||.++|+.+||||+++|++|.+ +.||..
T Consensus 13 ~~~~~vdiNtAs~~eL~~lpGIG~~~A~~IV~--~GpF~s 50 (97)
T 3arc_U 13 AYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK--NAPYES 50 (97)
T ss_dssp GGGTSEETTTSCGGGGGGSTTCTTHHHHHHHH--HCCCSS
T ss_pred ccCCceeCCcCCHHHHhHCCCCCHHHHHHHHH--cCCCCC
Confidence 34444467789999999999999999999999 788874
No 36
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=95.18 E-value=0.017 Score=55.83 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=37.7
Q ss_pred hccCCCCCHHHHHHHHHh--cCCHHHHHcCC-----HHhhhcCCCCCHHHHHHHHHH
Q 017612 220 LTSVRSVNKTDVVTLGST--FGSLSHIMDAS-----MEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--FGSLk~I~~AS-----~EELa~VPGIG~kKA~rI~e~ 269 (368)
|..|||||+..|..+.+- -|.++.+-... .+.|.+|+|||+++|++|++.
T Consensus 59 l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred HhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc
Confidence 789999999999887653 46666554432 233469999999999999864
No 37
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.75 E-value=0.04 Score=56.44 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=50.1
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.|..|||||...|+.|.+. |.|+.+|++++.++|..++|+|++.++.+..++.
T Consensus 647 ~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 647 PLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp GGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred hhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 5679999999999999987 9999999999999999999999999999999886
No 38
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.55 E-value=0.017 Score=60.95 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=53.9
Q ss_pred HHHHHHHhhc----cCCCCCHHHHHHHHHhcC--CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 212 YLSRLTHALT----SVRSVNKTDVVTLGSTFG--SLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 212 y~srL~saLT----sIpgVnKTDA~~LLs~FG--SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...++.++++ .|+|+|.+.+..|.++++ ++.+|+.+..++|..++|||+++|++|++.+..
T Consensus 431 ~~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~ 497 (667)
T 1dgs_A 431 RFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEE 497 (667)
T ss_dssp HHHHHHHHHSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHHH
Confidence 4566666663 699999999999999976 999999999999999999999999999999864
No 39
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.41 E-value=0.022 Score=49.67 Aligned_cols=38 Identities=11% Similarity=0.331 Sum_probs=31.4
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 276 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~ 276 (368)
.++.-=+|=+|+.+||..+||||+++|++|.+ |.||..
T Consensus 50 ~~~~kIniNtA~~~eL~~LpGiGp~~A~~II~--~GpF~s 87 (134)
T 1s5l_U 50 AYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK--NAPYES 87 (134)
T ss_dssp TSTTSEETTTSCGGGGGGSTTCTHHHHHHHHH--TCCCSS
T ss_pred ccCCeeeCcccCHHHHHHCCCCCHHHHHHHHH--cCCCCC
Confidence 34454567789999999999999999999994 778874
No 40
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=94.32 E-value=0.015 Score=43.99 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=25.0
Q ss_pred HHHcCCHHhhhcCCCCCHHHHHHHHHHh
Q 017612 243 HIMDASMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 243 ~I~~AS~EELa~VPGIG~kKA~rI~e~F 270 (368)
+|-.|+.++|..+||||++.|++|.+.+
T Consensus 20 diN~a~~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 20 SLNEASLEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp ETTTCCHHHHTTSTTCCHHHHHHHHHTC
T ss_pred ChhhCCHHHHHhCCCCCHHHHHHHHHHc
Confidence 3556889999999999999999999987
No 41
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.41 E-value=0.14 Score=40.77 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc--ccc
Q 017612 226 VNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH--EPF 274 (368)
Q Consensus 226 VnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~--ePF 274 (368)
|......+....+ .-+|-.|+.++|..|||||++.|++|.+.+. .+|
T Consensus 18 ~~pe~~~~~~~~~--~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f 66 (98)
T 2edu_A 18 ISPELLAHGRQKI--LDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPF 66 (98)
T ss_dssp SCHHHHHHHHHHH--HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHhcc--CeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCc
Confidence 4455444444332 4568889999999999999999999999985 466
No 42
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.26 E-value=0.14 Score=47.28 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=48.6
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|..++||+..++..|.+ -|.|+++|..++.++|..+.||.+.+|.+|.+....
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHH
Confidence 466788999999999987 699999999999999999999999999999887654
No 43
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=93.16 E-value=0.1 Score=55.21 Aligned_cols=60 Identities=10% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHhh----ccCCCCCHHHHHHHHHhc--CCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 213 LSRLTHAL----TSVRSVNKTDVVTLGSTF--GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 213 ~srL~saL----TsIpgVnKTDA~~LLs~F--GSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..++.++. -.|+|+|.+.+..|.++- .++.+|..+..++|..++|||++.|++|++.+..
T Consensus 437 ~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~ 502 (671)
T 2owo_A 437 KESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEK 502 (671)
T ss_dssp HHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHHHH
Confidence 44555544 279999999999999974 5999999999999999999999999999998864
No 44
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=93.11 E-value=0.068 Score=46.95 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=39.2
Q ss_pred CCCCC--HHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 223 VRSVN--KTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 223 IpgVn--KTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
|+++| ...|++|.+.+ +.++-.+.++|..+||||+..|..|.-+....
T Consensus 78 i~~lG~y~~KAk~i~~~a---~~~vp~~~~~L~~LpGVG~yTAdav~~F~~~e 127 (161)
T 4e9f_A 78 LKPLGLYDLRAKTIVKFS---DEYLTKQWKYPIELHGIGKYGNDSYRIFCVNE 127 (161)
T ss_dssp HGGGSCHHHHHHHHHHHH---HHHHHSCCSSGGGSTTCCHHHHHHHHHHTSSC
T ss_pred hhhcCCHHHHHHHHHHHh---CCcCCCChhhhhcCCCchHHHHHHHHHHHCCC
Confidence 34555 78899998876 47788899999999999999999998876443
No 45
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=92.83 E-value=0.1 Score=49.91 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=25.8
Q ss_pred hhccCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
-+.+|||||++.|..||+.|||+++|+..
T Consensus 204 niPGVpGIG~KTA~kLL~~~gsle~i~~~ 232 (290)
T 1exn_A 204 NIRGVEGIGAKRGYNIIREFGNVLDIIDQ 232 (290)
T ss_dssp TBCCCTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCCcCCHhHHHHHHHHcCCHHHHHHH
Confidence 35679999999999999999999999843
No 46
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=92.66 E-value=0.14 Score=53.36 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHHHhhc----cCCCCCHHHHHHHHHh--cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 212 YLSRLTHALT----SVRSVNKTDVVTLGST--FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 212 y~srL~saLT----sIpgVnKTDA~~LLs~--FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...++.++.+ .|.|+|...+..|++. ..++.+|+..+.++|..++|||++.|++|++.+..
T Consensus 436 ~~~~l~hf~sr~amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~ 502 (586)
T 4glx_A 436 RKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEK 502 (586)
T ss_dssp HHHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhHHHhhhccccccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHH
Confidence 3456665542 5999999999999986 48999999999999999999999999999999963
No 47
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.01 E-value=0.13 Score=48.95 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
.|..++|||..++..|.+ -|.|++.|..++..+|..+.||++.+|.+|.+.....
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~ 91 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 91 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhh
Confidence 477889999999999988 6999999999999999999999999999998877543
No 48
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=90.09 E-value=0.14 Score=47.29 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred hhccCCCCCHHHHHHHHHh-----cCCHHHHHcCCHHhhhc-CCCCCHH
Q 017612 219 ALTSVRSVNKTDVVTLGST-----FGSLSHIMDASMEDLAR-CPGIGER 261 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-----FGSLk~I~~AS~EELa~-VPGIG~k 261 (368)
.|..+||||++.|.++++. |.| .+||.. |+|||..
T Consensus 133 eL~~LpGIG~k~A~~IIeyRe~G~F~s--------~eDL~~RV~GIg~~ 173 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIEERKKRPFES--------FEDIAQRVKGIQRP 173 (205)
T ss_dssp GGGGSTTCCHHHHHHHHHHHHHSCCCS--------HHHHHHHSTTCCCH
T ss_pred HHhcCCCcCHHHHHHHHHHHhcCCCCC--------HHHHHHhcCCCCcc
Confidence 4566777777777777764 333 345644 7774443
No 49
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=89.96 E-value=0.18 Score=51.72 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=37.2
Q ss_pred hccCCCCCHHHHHHHHHh--------cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHH
Q 017612 220 LTSVRSVNKTDVVTLGST--------FGSLSHIMDASMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--------FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~ 269 (368)
|..+||||+..+..+-.. ||-+..-..+...+|..|+|||+++|++|++.
T Consensus 59 ~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 59 FTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 789999999877765433 23333333445578999999999999999985
No 50
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=89.74 E-value=0.29 Score=38.18 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=36.5
Q ss_pred HHHHHHH--hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 230 DVVTLGS--TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 230 DA~~LLs--~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+.+-|+ ...|+.+++.-+.+||.+++|||++-.+.|.+.+.+
T Consensus 19 Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 19 RSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3444444 367999999999999999999999999999999975
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=89.57 E-value=0.24 Score=50.47 Aligned_cols=51 Identities=10% Similarity=0.223 Sum_probs=42.2
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..|||||+..|+.|-+. |.|+++|+ ++.++|..+ ||++.+++|++.+++
T Consensus 658 ~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~--l~~~~~~~i~~~~~~ 709 (715)
T 2va8_A 658 ELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNL--LGQKLGEKVVQEAAR 709 (715)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHH--HCHHHHHHHHHHHHH
T ss_pred chhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHH--hChhHHHHHHHHHHH
Confidence 4559999999999999884 78999999 999999999 557777777765544
No 52
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=89.55 E-value=0.52 Score=46.30 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=44.9
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcC----CHHhhhcCCCCCHHHHHHH
Q 017612 214 SRLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDA----SMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 214 srL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~A----S~EELa~VPGIG~kKA~rI 266 (368)
+..+.-||.-.|||++.|.+||..||..+.+... ..+.|+.|.|+|+...+.+
T Consensus 407 eiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrsl 463 (519)
T 2csb_A 407 EIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSL 463 (519)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHH
T ss_pred HHHHHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHh
Confidence 3345678899999999999999999999888754 5789999999999877665
No 53
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=89.34 E-value=0.22 Score=48.15 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.6
Q ss_pred hccCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
+.+|||||.+.|..|+++|||+++|+..
T Consensus 234 ~~gipGiG~KtA~kll~~~gsle~i~~~ 261 (341)
T 3q8k_A 234 CESIRGIGPKRAVDLIQKHKSIEEIVRR 261 (341)
T ss_dssp SCCCTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHcCCHHHHHHH
Confidence 5589999999999999999999999854
No 54
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=88.84 E-value=0.26 Score=45.61 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=26.9
Q ss_pred cCCHHhhhcCCCCCHHHHHHHHHHhc-ccccc
Q 017612 246 DASMEDLARCPGIGERKVKRLYDTFH-EPFKR 276 (368)
Q Consensus 246 ~AS~EELa~VPGIG~kKA~rI~e~F~-ePF~~ 276 (368)
.|+.++|..+||||+++|++|.++=. .+|..
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s 159 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKKRPFES 159 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCS
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999988754 46753
No 55
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=88.70 E-value=0.26 Score=46.97 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=26.0
Q ss_pred hccCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
+.+|||||.+.|..|+++|||+++|+..
T Consensus 237 ipGv~GiG~KtA~kLl~~~gsle~i~~~ 264 (336)
T 1rxw_A 237 NEGVKGVGVKKALNYIKTYGDIFRALKA 264 (336)
T ss_dssp BCCCTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 5589999999999999999999999976
No 56
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.64 E-value=0.52 Score=46.27 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 224 RSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 224 pgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-||+..++.+|.+ .|.|+++|..++..||..+.||++.+|.+|.+...+
T Consensus 89 ~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 89 NGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 138 (400)
T ss_dssp TTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3699999999988 599999999999999999999999999999776543
No 57
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=88.61 E-value=0.23 Score=37.12 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.3
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 249 MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+.|..|||||++.+++|.+.|..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs 26 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKN 26 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCC
Confidence 467999999999999999999954
No 58
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=88.42 E-value=0.41 Score=38.69 Aligned_cols=37 Identities=11% Similarity=0.335 Sum_probs=34.3
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
...|+.+++..+.+||.+++|||++-.+.|.+.+.+-
T Consensus 31 gI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 31 AIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp TCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 4679999999999999999999999999999999764
No 59
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=87.85 E-value=1.8 Score=41.80 Aligned_cols=95 Identities=14% Similarity=0.110 Sum_probs=66.8
Q ss_pred eeeeec-hhhHHHHHHHHHHhhc-CCc-------------c-----hhcc-cccccHHHHHHHhhccCCCCCHHHHHHHH
Q 017612 177 CALYLS-LEECGRYLETIKVYEN-KPA-------------D-----LIQG-QMDTDYLSRLTHALTSVRSVNKTDVVTLG 235 (368)
Q Consensus 177 cILFLS-~EEAArYIEt~K~~E~-K~~-------------d-----~Ire-k~e~dy~srL~saLTsIpgVnKTDA~~LL 235 (368)
-|..+. .+|+++||..|-..=. .+- . .++. +...+..+.....|..|+||....|..|+
T Consensus 193 ~v~~t~~~~Et~~~l~~~T~~Ia~~pyk~~r~~~~~~~~~~~~~~~~vk~~~~~~~~~d~w~~~L~qi~gVS~ekA~aI~ 272 (341)
T 2ziu_B 193 QAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAGGVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVV 272 (341)
T ss_dssp BCCEESSHHHHHHHHHHHHHHHHCCC---CCSCCHHHHHTSCCTTCCBCCCTTCTTHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCcchhhhccCCcceeecCccccccccCCCCCcHHHHHHHHHHHccCCCHHHHHHHH
Confidence 344443 9999999988876411 110 0 0111 12355667778889999999999999999
Q ss_pred HhcCCHHHHHcC-----CHH----hhhcC------------CCCCHHHHHHHHHHhc
Q 017612 236 STFGSLSHIMDA-----SME----DLARC------------PGIGERKVKRLYDTFH 271 (368)
Q Consensus 236 s~FGSLk~I~~A-----S~E----ELa~V------------PGIG~kKA~rI~e~F~ 271 (368)
++|-|+..|+.| +.+ -|+.+ .-||+...++|+++|.
T Consensus 273 ~~YPTp~~L~~Ay~~~~~~~e~~~lL~~~~~~~~~g~~~~~r~iG~~lS~rI~~~f~ 329 (341)
T 2ziu_B 273 NAYPSPQLLVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMT 329 (341)
T ss_dssp HHSCSHHHHHHHHHTCSCHHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhcCChHHHHHHHHhhhcccccCCcccCCccCHHHHHHHHHHHh
Confidence 999999999876 222 23333 2399999999999996
No 60
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=87.49 E-value=0.9 Score=44.63 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHhcCCHHHHHcCCHH-------------------------hhhcCCCCCHHHHHHHHHHhcccc
Q 017612 223 VRSVNKTDVVTLGSTFGSLSHIMDASME-------------------------DLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 223 IpgVnKTDA~~LLs~FGSLk~I~~AS~E-------------------------ELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
-.|+.+..|..|+.||.|+..|+..+.+ ||.+-.|+|.+.|+++..+|..|-
T Consensus 359 ehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpe 435 (519)
T 2csb_A 359 EHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPE 435 (519)
T ss_dssp HHCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHH
T ss_pred hcCCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHcccccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHhCCHH
Confidence 3588899999999999999999987654 566789999999999999998764
No 61
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=87.11 E-value=0.38 Score=38.29 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=36.6
Q ss_pred HHHHHHH--hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 230 DVVTLGS--TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 230 DA~~LLs--~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+.+-|+ ...|+.+++..+.+||..+.|||++-.+.|.+.+.+
T Consensus 26 Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 26 RSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 3444444 467999999999999999999999999999999875
No 62
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.98 E-value=0.34 Score=49.44 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=36.5
Q ss_pred hccCCCCCHHHHHHHHHh--cCCHHHH------HcCCHHhhhcCCCCCHHHHHHHHHHh
Q 017612 220 LTSVRSVNKTDVVTLGST--FGSLSHI------MDASMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~--FGSLk~I------~~AS~EELa~VPGIG~kKA~rI~e~F 270 (368)
|..|||||+.-+..+-.. =|.+..+ -.....+|..|+|||+++|.+|++.+
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~l 113 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEGL 113 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHhc
Confidence 889999998877655332 1333222 22345689999999999999999874
No 63
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=86.67 E-value=0.37 Score=45.94 Aligned_cols=28 Identities=0% Similarity=-0.022 Sum_probs=25.8
Q ss_pred hc-cCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 220 LT-SVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 220 LT-sIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
+. +|||||.+.|..|++.|||+++|+..
T Consensus 238 ~p~gv~GiG~ktA~kli~~~gsle~il~~ 266 (340)
T 1b43_A 238 NPGGIKGIGLKKALEIVRHSKDPLAKFQK 266 (340)
T ss_dssp STTCSTTCCHHHHHHHHHTCSSGGGGTGG
T ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHHcC
Confidence 45 89999999999999999999999876
No 64
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=86.44 E-value=1 Score=40.69 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHH-HcCCHHhhhcCCCCCHHHHHHHHHHh
Q 017612 229 TDVVTLGSTFGSLSHI-MDASMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 229 TDA~~LLs~FGSLk~I-~~AS~EELa~VPGIG~kKA~rI~e~F 270 (368)
.-|+.+++.|+.+..+ .....++|..+||||++.|..|.-+-
T Consensus 99 ~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 99 DLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 3444556778887754 24568899999999999999998754
No 65
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=86.23 E-value=0.87 Score=42.97 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=48.0
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..+||||+..+++|-++ +.|+.+|+.++.+++..+-|+++..++.|+++++.
T Consensus 158 pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 4678999999999988653 66999999999999999889999999999999874
No 66
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=85.89 E-value=0.31 Score=46.77 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=20.8
Q ss_pred hc-cCCCCCHHHHHHHHHhcCCHHHHHcCC
Q 017612 220 LT-SVRSVNKTDVVTLGSTFGSLSHIMDAS 248 (368)
Q Consensus 220 LT-sIpgVnKTDA~~LLs~FGSLk~I~~AS 248 (368)
+. +|||||.+.|..|+++|||+++|+..-
T Consensus 235 ~p~Gv~GIG~KtA~kLi~~~gsle~i~~~~ 264 (346)
T 2izo_A 235 NPDGIRGIGPERALKIIKKYGKIEKAMEYG 264 (346)
T ss_dssp STTCSTTCCHHHHHHHHHHSSCC-------
T ss_pred CCCCCCCcCHHHHHHHHHHcCCHHHHHHHH
Confidence 55 899999999999999999999998663
No 67
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=85.66 E-value=0.53 Score=45.86 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.9
Q ss_pred hhccCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
...+|||||.+.|..|+..|||+++|+..
T Consensus 233 ~~d~IpGIG~KtA~kLl~~~gsle~i~~~ 261 (379)
T 1ul1_X 233 YCESIRGIGPKRAVDLIQKHKSIEEIVRR 261 (379)
T ss_dssp SSCCCTTCCHHHHHHHHHHSSSHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 34469999999999999999999999866
No 68
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=85.21 E-value=0.74 Score=37.98 Aligned_cols=37 Identities=11% Similarity=0.375 Sum_probs=34.3
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
...|+.+++.-+.+||.+++|||++-...|.+.|.+-
T Consensus 43 gI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 43 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp TCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 4679999999999999999999999999999999754
No 69
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=85.20 E-value=0.61 Score=50.17 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=40.5
Q ss_pred HhhccCCCCCHHHHHHHHHhcCCHHHHHc--CCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 218 HALTSVRSVNKTDVVTLGSTFGSLSHIMD--ASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 218 saLTsIpgVnKTDA~~LLs~FGSLk~I~~--AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..|..|+|||+..|.+|+.+- +--. .+.+||..|+|||+++.+++..++.-
T Consensus 508 ~~L~~v~GiG~~~A~~Iv~yR----~~~G~f~sr~~L~~V~giG~k~~ekl~~FL~i 560 (785)
T 3bzc_A 508 ALLARISGLNSTLAQNIVAHR----DANGAFRTRDELKKVSRLGEKTFEQAAGFLRV 560 (785)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH----HHHCCCSSGGGGGGSTTCCHHHHHHHGGGEEC
T ss_pred HHHhhcCCCCHHHHHHHHHHH----HhcCCCCCHHHHHhcCCCCHHHHHHhhheEEE
Confidence 467889999999999999851 1111 25689999999999999999888853
No 70
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=84.54 E-value=0.43 Score=48.70 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=46.9
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccccC
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~~~ 278 (368)
.|..|||||+..|+.|.+. |.|+.+|++++ ++|..+ ||++.+++|++.++-|+....
T Consensus 633 ~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~l--l~~~~~~~i~~~~~~p~~~~~ 690 (702)
T 2p6r_A 633 ELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASL--IGRGIAERVVEGISVKSLNPE 690 (702)
T ss_dssp HHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHH--HCHHHHHHHHHHHHHHC----
T ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHH--hChhHHHHHHHhcCCCccCcc
Confidence 4568999999999999975 99999999999 999987 568889999998887766543
No 71
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=83.81 E-value=0.97 Score=40.79 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHH-hcc
Q 017612 231 VVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDT-FHE 272 (368)
Q Consensus 231 A~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~-F~e 272 (368)
|+.|++.|+. -+....++|..+||||++.|..|.-+ |+.
T Consensus 93 a~~i~~~~~g---~~p~~~~~L~~lpGIG~~TA~~il~~a~~~ 132 (225)
T 1kg2_A 93 AQQVATLHGG---KFPETFEEVAALPGVGRSTAGAILSLSLGK 132 (225)
T ss_dssp HHHHHHHSTT---SCCCSHHHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCC---CchHHHHHHhcCCCCcHHHHHHHHHHhCCC
Confidence 3344445543 12346899999999999999998765 443
No 72
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=83.68 E-value=1.4 Score=40.24 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=34.6
Q ss_pred CCCHHHHHHH-------HHhcCCHHHHHcCC----HHhhhcCCCCCHHHHHHHHHH-hcc
Q 017612 225 SVNKTDVVTL-------GSTFGSLSHIMDAS----MEDLARCPGIGERKVKRLYDT-FHE 272 (368)
Q Consensus 225 gVnKTDA~~L-------Ls~FGSLk~I~~AS----~EELa~VPGIG~kKA~rI~e~-F~e 272 (368)
|++...|+.| ++.+.+++.+...+ .++|..+||||++.|..|.-+ |+.
T Consensus 102 G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~ 161 (233)
T 2h56_A 102 GVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGR 161 (233)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 6776555444 34446788786555 568999999999999999875 443
No 73
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.59 E-value=0.22 Score=46.45 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=0.0
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|..++||+..++.+|-+ .|.|+++|..++..+|..+.||.+.+|.+|.+....
T Consensus 13 ~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 13 TINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp -------------------------------------------------------
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 456677999999999976 699999999999999999999999999999877654
No 74
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=83.41 E-value=0.74 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=21.3
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 249 MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+.|..|||||++.+++|.+.|..
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~FgS 40 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKN 40 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSC
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCC
Confidence 457999999999999999999954
No 75
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=83.19 E-value=1.8 Score=39.69 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=44.1
Q ss_pred ccHHHHHHHhhccCCCCCHHH----HHHHHHhcC------CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKTD----VVTLGSTFG------SLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKTD----A~~LLs~FG------SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++- -..++-.. ..+|...|| +.+.|..++.++|..| |+|..||+.|+++..
T Consensus 58 ~dpfe~Lv~~Il-~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~~-Gl~~~Ka~~l~~~A~ 127 (232)
T 4b21_A 58 HAPYEGIIRAIT-SQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHEC-GFSKLKSQEIHIVAE 127 (232)
T ss_dssp SCHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHTT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHHc-CCcHHHHHHHHHHHH
Confidence 366666666552 23444433 456677755 8999999999999876 999999999988764
No 76
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=83.19 E-value=0.28 Score=47.94 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=33.7
Q ss_pred hc-cCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 220 LT-SVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 220 LT-sIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
+. +|||||.+.|..|+++|||+++|+..-.. ..++ + -.+.++++|-.|
T Consensus 252 ~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~--~~~~-~---~~~~~~~~f~~p 300 (363)
T 3ory_A 252 NPDGFEGIGPKKALQLVKAYGGIEKIPKPILK--SPIE-V---DVIAIKKYFLQP 300 (363)
T ss_dssp BTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCC--CSSC-C---CHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHcCCHHHHHHhccc--ccCC-C---CHHHHHHHhcCC
Confidence 35 99999999999999999999999864211 1222 2 235666776433
No 77
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=82.86 E-value=0.71 Score=35.72 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.1
Q ss_pred HcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 245 MDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 245 ~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..+....|..|||||++.|++|.+.|..
T Consensus 14 ~~~~~~~L~~IpgIG~~~A~~Ll~~fgs 41 (89)
T 1z00_A 14 VSRVTECLTTVKSVNKTDSQTLLTTFGS 41 (89)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHHTCB
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 3444577999999999999999999853
No 78
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=79.71 E-value=1.2 Score=32.50 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.5
Q ss_pred HhhhcCCCCCHHHHHHHHHHhcc
Q 017612 250 EDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 250 EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..|..|||||++.|++|.+.|..
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~fgs 36 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHFGS 36 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHcCCCCCCHHHHHHHHHHcCC
Confidence 46899999999999999999854
No 79
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=79.42 E-value=1.2 Score=38.97 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=46.0
Q ss_pred hcccccccHHHHHHHhh----ccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhc-CCCCC--HHHHHHHHHHhccc
Q 017612 204 IQGQMDTDYLSRLTHAL----TSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLAR-CPGIG--ERKVKRLYDTFHEP 273 (368)
Q Consensus 204 Irek~e~dy~srL~saL----TsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~-VPGIG--~kKA~rI~e~F~eP 273 (368)
+++....|+.+-+++++ |+...|++ --.+|.++|.|+++|..|+.+||.. +.|+| ..||++|++..+.-
T Consensus 23 ~qE~~~~dP~~vLVs~ILsqQT~~~~v~~-~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~ 98 (161)
T 4e9f_A 23 VQETLFHDPWKLLIATIFLNRTSGKMAIP-VLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEY 98 (161)
T ss_dssp THHHHTTSHHHHHHHHHHTTTSCHHHHHH-HHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhhhcCChHHHHHHHHHHhhCcHHHHHH-HHHHHHHHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCc
Confidence 34433345554444432 22333332 3467899999999999999999755 47777 68999999987643
No 80
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=79.21 E-value=1.2 Score=49.20 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHHhhccCCCCCHHHHHHHHHhc----CCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 216 LTHALTSVRSVNKTDVVTLGSTF----GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 216 L~saLTsIpgVnKTDA~~LLs~F----GSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
....|.-|+|||++.|.+|+++. |.+ .+.++|..|+|||++.-++...+|+-++
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f-----~sr~~L~~v~~iG~k~fe~~agflrI~~ 772 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPL-----LARQQLITHNILHKTIFMNSAGFLYISW 772 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCC-----CCTTHHHHTTSSCHHHHHHHTTTEECCC
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCC-----CCHHHHHhcCCccHHHHHhccCeEEEcc
Confidence 36678889999999999998754 333 3567899999999999999988887654
No 81
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=79.08 E-value=1.2 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.6
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-...|..|||||++.|++|.+.|..
T Consensus 30 ~~~~L~~IpgIG~~~A~~Ll~~fgs 54 (91)
T 2a1j_B 30 VTECLTTVKSVNKTDSQTLLTTFGS 54 (91)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 3467889999999999999999854
No 82
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=78.98 E-value=1.7 Score=38.70 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=22.8
Q ss_pred cCCHHhhhcCCCCCHHHHHHHHHH-hccc
Q 017612 246 DASMEDLARCPGIGERKVKRLYDT-FHEP 273 (368)
Q Consensus 246 ~AS~EELa~VPGIG~kKA~rI~e~-F~eP 273 (368)
....++|..+||||++.|..|.-+ |+.+
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~ 133 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTAFGWP 133 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHCCCC
Confidence 356789999999999999999876 4433
No 83
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=78.98 E-value=0.76 Score=34.78 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 249 MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...|..|||||++.|++|.+.|..
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgs 46 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGG 46 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSC
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 456899999999999999999853
No 84
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=77.87 E-value=3.7 Score=39.85 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=42.0
Q ss_pred hccCCCCCHHHHHHHHHhc--CCHHHHHcCCHHhhhcCCCCCHHHHHHH---HHHhcccccccCCCCCCCCCCCCc
Q 017612 220 LTSVRSVNKTDVVTLGSTF--GSLSHIMDASMEDLARCPGIGERKVKRL---YDTFHEPFKRVVSSHPPIPETPSQ 290 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~F--GSLk~I~~AS~EELa~VPGIG~kKA~rI---~e~F~ePF~~~~~s~~~~~~~~~~ 290 (368)
+.+|||||.+.|..|++.| |++++|+..-.+.|..-.-+-+.-.+.. ..+|.-+..-.+.++..++.++..
T Consensus 227 ~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~~~~~vp~~~~~~~~~A~~~F~~q~V~dp~~~~~~~l~~~~ 302 (352)
T 3qe9_Y 227 LSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNAYE 302 (352)
T ss_dssp SCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHCEEEETTTTEEEESSCCC
T ss_pred CCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhCCCEEECCCCCeEeeCCCCC
Confidence 5689999999999999999 7999998765444442112333322211 223333333334445555555533
No 85
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=77.49 E-value=2.5 Score=40.50 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.8
Q ss_pred cCCHHhhhcCCCCCHHHHHHHHHHh
Q 017612 246 DASMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 246 ~AS~EELa~VPGIG~kKA~rI~e~F 270 (368)
....++|..+||||++.|..|.-+-
T Consensus 114 p~~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 114 PDDPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCcCHHHHHHHHHHH
Confidence 4578999999999999999997764
No 86
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=75.48 E-value=2.5 Score=38.06 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHhhcCCcchhcccccccHHHHHHHhhccCCCCCHHHHHHHH-------HhcCCHHHHHcCCHHhhhcC
Q 017612 183 LEECGRYLETIKVYENKPADLIQGQMDTDYLSRLTHALTSVRSVNKTDVVTLG-------STFGSLSHIMDASMEDLARC 255 (368)
Q Consensus 183 ~EEAArYIEt~K~~E~K~~d~Irek~e~dy~srL~saLTsIpgVnKTDA~~LL-------s~FGSLk~I~~AS~EELa~V 255 (368)
.+-+..++..|...- -.++.|.... .+.|...+..+ |.....|+.|. +.|+. -+....++|..+
T Consensus 50 ~~~~~~~~~~l~~~f-ptp~~la~a~----~e~l~~~i~~~-G~~~~KA~~l~~~a~~i~~~~~g---~~p~~~~~L~~l 120 (221)
T 1kea_A 50 AGHVKKIYDKFFVKY-KCFEDILKTP----KSEIAKDIKEI-GLSNQRAEQLKELARVVINDYGG---RVPRNRKAILDL 120 (221)
T ss_dssp HHHHHHHHHHHHHHC-CSHHHHHHSC----HHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHTT---SCCSCHHHHHTS
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHCCC----HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHhCC---CchHHHHHHHhC
Confidence 444555665554321 1123333322 23344444333 55555555544 33432 123467899999
Q ss_pred CCCCHHHHHHHHHHh
Q 017612 256 PGIGERKVKRLYDTF 270 (368)
Q Consensus 256 PGIG~kKA~rI~e~F 270 (368)
||||++.|..|.-+.
T Consensus 121 pGIG~~TA~~il~~~ 135 (221)
T 1kea_A 121 PGVGKYTCAAVMCLA 135 (221)
T ss_dssp TTCCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh
Confidence 999999999997653
No 87
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=74.99 E-value=2.6 Score=38.23 Aligned_cols=53 Identities=13% Similarity=0.365 Sum_probs=33.4
Q ss_pred HHHhhccCCCCCHHHHHHH-------HHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHH-hcc
Q 017612 216 LTHALTSVRSVNKTDVVTL-------GSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDT-FHE 272 (368)
Q Consensus 216 L~saLTsIpgVnKTDA~~L-------Ls~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~-F~e 272 (368)
|...|..+ |.....|+.| ++.|+. -+....++|..+||||++.|..|.-+ |+.
T Consensus 76 l~~~i~~~-G~~~~KA~~l~~~a~~i~~~~~g---~~p~~~~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 76 LEQDIRSI-GLYRNKARNIQKLCAMLIDKYNG---EVPRDRDELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp HHHHTGGG-SSHHHHHHHHHHHHHHHHHHSTT---SCCSCHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHc-CChHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHHHCCCccHHHHHHHHHHHCCC
Confidence 44444333 5554455544 344432 23456899999999999999999875 443
No 88
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=74.67 E-value=3.6 Score=32.70 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=49.7
Q ss_pred CCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccccC
Q 017612 223 VRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVV 278 (368)
Q Consensus 223 IpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~~~ 278 (368)
.||+...-+..|-+ +..|+.+++.++.+||+++=|++-+.+..|++.+..-|...+
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~ 65 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP 65 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCc
Confidence 37888888888877 689999999999999999999999999999999988776543
No 89
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=74.41 E-value=3.6 Score=37.43 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=42.1
Q ss_pred ccHHHHHHHhhccCCCCCHH----HHHHHHHhcC----CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKT----DVVTLGSTFG----SLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKT----DA~~LLs~FG----SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++-+ ..++-. -..+|.+.|| +.++|..++.++|..| |++..||+.|+++..
T Consensus 49 ~dpfe~Lv~~Ils-Qqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~~-G~~~~KA~~I~~~A~ 116 (233)
T 2h56_A 49 PNPFQSLVSSIVE-QQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQA-GVSKRKIEYIRHVCE 116 (233)
T ss_dssp SCHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHH
Confidence 3555555554422 233333 3446777875 8999999999999665 999999999987764
No 90
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=73.57 E-value=2.1 Score=42.22 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=45.0
Q ss_pred hhccCCCCCHHHHHHHHHhcC--CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGSTFG--SLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FG--SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|..|+|||+..+..||..+| |+.+|..++.+.|... +|++.+..|++..+.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~~a~G 307 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH--FGEKNGSWLYAMCRG 307 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHHHTTT
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH--hCccHHHHHHHHhhC
Confidence 567889999988888888876 9999999999999998 888889999887753
No 91
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=73.28 E-value=4.6 Score=37.94 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHHHhcCCHHHHHcCC----HHhhhcCCCCCHHHHHHHHHH-hcc
Q 017612 233 TLGSTFGSLSHIMDAS----MEDLARCPGIGERKVKRLYDT-FHE 272 (368)
Q Consensus 233 ~LLs~FGSLk~I~~AS----~EELa~VPGIG~kKA~rI~e~-F~e 272 (368)
.+++.+..++.+...+ .++|..+||||++.|.-|.-+ |+.
T Consensus 190 ~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 190 RIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQK 234 (290)
T ss_dssp HHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCC
Confidence 3444556788877665 467999999999999999765 443
No 92
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.21 E-value=0.7 Score=43.61 Aligned_cols=54 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred hhccCC--CCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVR--SVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIp--gVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|..++ ||+..++.+|-+ .|.|+++|..++..+|..+.||.+.+|.+|++....
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~ 82 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82 (343)
T ss_dssp ---------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 355555 999999999977 599999999999999999999999999999877643
No 93
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=72.41 E-value=2.3 Score=47.87 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=44.0
Q ss_pred HHHhhccCCCCCHHHHHHHHHhc----CCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 216 LTHALTSVRSVNKTDVVTLGSTF----GSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 216 L~saLTsIpgVnKTDA~~LLs~F----GSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
....|.-|+|||++.|.+|+++. |.+ .+.++|..|+|||++.-++...+|+-+.
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f-----~sr~~L~~v~~iG~k~fe~~agflrI~~ 769 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPL-----LARQQLITHNILHKTIFMNSAGFLYISW 769 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCC-----CCTTHHHHTTCSCHHHHHHHGGGEECCC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-----CCHHHHhhCCCccHHHHHhccccEEEcc
Confidence 35678889999999999998764 333 3567999999999999999998887654
No 94
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=72.39 E-value=4.3 Score=36.52 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=41.2
Q ss_pred ccHHHHHHHhhccCCCCCH----HHHHHHHHhcCCHHHHHcCCHHhhhcC---CCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNK----TDVVTLGSTFGSLSHIMDASMEDLARC---PGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnK----TDA~~LLs~FGSLk~I~~AS~EELa~V---PGIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++-+ ..++- .-..+|.+.|.+.++|..++.+||..+ -|++..||+.|+++.+
T Consensus 33 ~~pfe~lv~~Ils-Qqts~~~~~~~~~~l~~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~ 100 (221)
T 1kea_A 33 RDPYVILITEILL-RRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELAR 100 (221)
T ss_dssp CCHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4555555554421 12332 234567889999999999999998532 3777789999988764
No 95
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=72.21 E-value=2.3 Score=34.01 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.7
Q ss_pred CCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 247 ASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 247 AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+..|+..++|||++.+++|-+.|..
T Consensus 55 ~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 55 RSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp CSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 36789999999999999999988854
No 96
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=71.52 E-value=2.1 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred hhhcCCCCCHHHHHHHHHHhcc
Q 017612 251 DLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 251 ELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..|+|||++.|.+|.+.|..
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh
Confidence 6888999999999999999976
No 97
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.50 E-value=2.4 Score=40.90 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.9
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
+.++|..+||||+++|+.|.+++..
T Consensus 55 ~~~~l~~lpGIG~~~A~kI~E~l~t 79 (335)
T 2bcq_A 55 SYQEACSIPGIGKRMAEKIIEILES 79 (335)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CHHHHhcCCCccHHHHHHHHHHHHc
Confidence 3456999999999999999999875
No 98
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=70.93 E-value=2.9 Score=39.58 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=23.5
Q ss_pred hc-cCCCCCHHHHHHHHHhcCCHHHHH
Q 017612 220 LT-SVRSVNKTDVVTLGSTFGSLSHIM 245 (368)
Q Consensus 220 LT-sIpgVnKTDA~~LLs~FGSLk~I~ 245 (368)
+. +|||||.+.|..|+++ ||+++|+
T Consensus 226 ~p~GvpGiG~ktA~kli~~-gsle~i~ 251 (326)
T 1a76_A 226 NPGGVKGIGFKRAYELVRS-GVAKDVL 251 (326)
T ss_dssp STTTTTTCCHHHHHHHHHH-TCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHc-CCHHHHH
Confidence 55 8999999999999999 9999998
No 99
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=70.76 E-value=5.7 Score=36.12 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=42.6
Q ss_pred cHHHHHHHhhccCCCCCHHHHHHHH---Hhc------CCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 211 DYLSRLTHALTSVRSVNKTDVVTLG---STF------GSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 211 dy~srL~saLTsIpgVnKTDA~~LL---s~F------GSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
+..+.++.++-+ ..++-..|..++ ..| -+.+.|..++.++|..| |++..||+.|+++..
T Consensus 49 d~fe~Lv~~Il~-Qq~s~~~a~~~~~rL~~~Gg~~~fPtp~~la~~~~e~Lr~~-G~~~rKa~~i~~~A~ 116 (228)
T 3s6i_A 49 EPYEELIRAVAS-QQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRAC-GFSARKIDSLKSIAE 116 (228)
T ss_dssp CHHHHHHHHHHH-SSSCHHHHHHHHHHHHTSSGGGSCCCHHHHHHSCHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhcCCCCCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHH
Confidence 566666665522 345555555444 444 49999999999999765 999999999987764
No 100
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=70.32 E-value=6.3 Score=36.04 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHH---h-----cCCHHHHHcCC----HHhhhcCCCCCHHHHHHHHHHh
Q 017612 225 SVNKTDVVTLGS---T-----FGSLSHIMDAS----MEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 225 gVnKTDA~~LLs---~-----FGSLk~I~~AS----~EELa~VPGIG~kKA~rI~e~F 270 (368)
|++...|+.|.. . +..++.+...+ .++|..+||||++.|..|.-+-
T Consensus 113 Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 113 GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 788776665433 2 22677777766 4679999999999999987653
No 101
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=69.79 E-value=11 Score=39.16 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHhhccCCCCCHHHHHHHHHhcCCHHHHH----cCCH---------------------HhhhcCCCCCHHHHHHHHHHhc
Q 017612 217 THALTSVRSVNKTDVVTLGSTFGSLSHIM----DASM---------------------EDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 217 ~saLTsIpgVnKTDA~~LLs~FGSLk~I~----~AS~---------------------EELa~VPGIG~kKA~rI~e~F~ 271 (368)
+..|+-=-|+|...+..|+..||....+- +... .-|..|+|||+.+|++|.+.|.
T Consensus 410 LASLAvkfG~g~eTAe~L~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIaGIGp~tAeRLLEkFG 489 (685)
T 4gfj_A 410 LAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYG 489 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHT
T ss_pred hhhhhhhcCCchHHHHHHHHHhcchhhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccCCCCHHHHHHHHHHhc
Confidence 34454335999999999999999933322 2333 4577888899999999999996
Q ss_pred ccc
Q 017612 272 EPF 274 (368)
Q Consensus 272 ePF 274 (368)
.-.
T Consensus 490 SVe 492 (685)
T 4gfj_A 490 GYS 492 (685)
T ss_dssp SHH
T ss_pred CHH
Confidence 543
No 102
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=69.14 E-value=3.8 Score=40.71 Aligned_cols=53 Identities=23% Similarity=0.206 Sum_probs=40.7
Q ss_pred hhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcC-------CCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARC-------PGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~V-------PGIG~kKA~rI~e~F~e 272 (368)
.|..++|||.....+|+++||+.++++.+..+ |... .-.....+++..+.+.+
T Consensus 27 ~L~~~~gvG~~~~~~Ll~~fgs~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (382)
T 3maj_A 27 RLIRAENVGPRTFRSLINHFGSARAALERLPE-LARRGGAARAGRIPSEDEARREIEAGRR 86 (382)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHH-HHHHHTCSSCCCCCCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHHHHHHHHHHcCCHHHHHHcCHH-HHHhhhHHHHhcCCCHHHHHHHHHHHHh
Confidence 67899999999999999999999999987543 3221 12346678888777765
No 103
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=68.38 E-value=3.8 Score=38.99 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHcCCHHhhhc-CCCCCHHHHHHHHHHh
Q 017612 231 VVTLGSTFGSLSHIMDASMEDLAR-CPGIGERKVKRLYDTF 270 (368)
Q Consensus 231 A~~LLs~FGSLk~I~~AS~EELa~-VPGIG~kKA~rI~e~F 270 (368)
|+.|+++||.. +-.+.++|.. +||||++.|..|.-+-
T Consensus 112 A~~i~~~~~g~---~p~~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 112 ARKVVEELGGH---MPRTAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHHHHHSTTC---CCSSHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 34445556541 3457899998 9999999999997653
No 104
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=67.31 E-value=7.5 Score=35.35 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHH---hc--C---CHHHHHcCC----HHhhhcCCCCCHHHHHHHHHH
Q 017612 225 SVNKTDVVTLGS---TF--G---SLSHIMDAS----MEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 225 gVnKTDA~~LLs---~F--G---SLk~I~~AS----~EELa~VPGIG~kKA~rI~e~ 269 (368)
|++...|+.|.. .+ | .++.+...+ .++|..+||||++.|..|.-+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 777776665542 22 2 567776666 568999999999999998854
No 105
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=67.04 E-value=3.2 Score=39.90 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.0
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
+.++|..+||||++.|+.|.+++..
T Consensus 55 ~~~~l~~LpGIG~~~A~kI~E~l~t 79 (335)
T 2fmp_A 55 SGAEAKKLPGVGTKIAEKIDEFLAT 79 (335)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 4557999999999999999999864
No 106
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=66.74 E-value=4.9 Score=37.69 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHh--cCCHHHHHcCC----HHhhhcCCCCCHHHHHHHHHHh
Q 017612 225 SVNKTDVVTLGST--FGSLSHIMDAS----MEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 225 gVnKTDA~~LLs~--FGSLk~I~~AS----~EELa~VPGIG~kKA~rI~e~F 270 (368)
|++...|+.|..- .|+++.+...+ .++|..+||||++.|.-|.-+-
T Consensus 179 G~~~rKa~~i~~~A~~g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~ 230 (295)
T 2jhn_A 179 GLSRRKAELIVEIAKEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIA 230 (295)
T ss_dssp TCCHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHc
Confidence 7787777666442 26677666555 4689999999999999998763
No 107
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=66.69 E-value=2.6 Score=38.11 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=20.1
Q ss_pred hhhcCCCCCHHHHHHHHHHhcc
Q 017612 251 DLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 251 ELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..|+|||++.|.+|.+.|..
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh
Confidence 5778999999999999999976
No 108
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=65.88 E-value=5.9 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=42.7
Q ss_pred ccHHHHHHHhhccCCCCCHH----HHHHHHHhcC--CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKT----DVVTLGSTFG--SLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKT----DA~~LLs~FG--SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++-+ ..++-. -..+|.+.|| +.+.|..++.++|..| |++..||+.|+++..
T Consensus 59 ~dpfe~Lv~~Ils-Qq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~-G~~~~KA~~i~~lA~ 124 (225)
T 2yg9_A 59 PDPFGRLVRSVAG-QQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGV-GLSWAKVRTVQAAAA 124 (225)
T ss_dssp SCHHHHHHHHHHH-TTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHHC-CCcHHHHHHHHHHHH
Confidence 3555666555432 234433 3446777784 8999999999999665 899999999988764
No 109
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=65.83 E-value=1.3 Score=46.67 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhccCCCCCHHHHHHHHHh--cCCHHHHHcCCHHhhhcCCCC------CHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST--FGSLSHIMDASMEDLARCPGI------GERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~--FGSLk~I~~AS~EELa~VPGI------G~kKA~rI~e~F~e 272 (368)
+| .|.|+|.+.+..|+.+ ..++.+|+..+.++|..++|| |++.|++|++.+..
T Consensus 459 am-dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~ 519 (615)
T 3sgi_A 459 GL-DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDK 519 (615)
T ss_dssp --------------------------------------------------------------
T ss_pred cc-CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHH
Confidence 44 6999999999999875 678888999999999999966 68999999999864
No 110
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=65.50 E-value=4.2 Score=36.81 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHcCCHHhhhc-C--CCCCHHHHHHHHHHhc
Q 017612 231 VVTLGSTFGSLSHIMDASMEDLAR-C--PGIGERKVKRLYDTFH 271 (368)
Q Consensus 231 A~~LLs~FGSLk~I~~AS~EELa~-V--PGIG~kKA~rI~e~F~ 271 (368)
..+|...|.+.+.|..++.+||.. + -|+...||+.|+++..
T Consensus 55 ~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 98 (226)
T 1orn_A 55 TKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCA 98 (226)
T ss_dssp HHHHHHHCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 346788999999999999999754 2 3667789999987764
No 111
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=64.51 E-value=6.5 Score=35.82 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhcC--CHHHHHcC------CHHhhh-cCCCCCHHHHHHHHHHh
Q 017612 226 VNKTDVVTLGSTFG--SLSHIMDA------SMEDLA-RCPGIGERKVKRLYDTF 270 (368)
Q Consensus 226 VnKTDA~~LLs~FG--SLk~I~~A------S~EELa-~VPGIG~kKA~rI~e~F 270 (368)
.-+..|+.|..-.. .+.+.+.. ..++|. .+||||++.|.-|..+.
T Consensus 92 f~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 92 FYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp THHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 33556666655444 55444332 347899 99999999999987764
No 112
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=63.89 E-value=4.1 Score=36.92 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHH---hc----CCHHHHHcCC----HHhhhcCCCCCHHHHHHHHHH
Q 017612 225 SVNKTDVVTLGS---TF----GSLSHIMDAS----MEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 225 gVnKTDA~~LLs---~F----GSLk~I~~AS----~EELa~VPGIG~kKA~rI~e~ 269 (368)
|++...|+.|.. .+ .+++.+...+ .++|..+||||++.|.-|.-+
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 676666555433 22 3555555444 467999999999999998865
No 113
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=63.86 E-value=8.4 Score=36.44 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=46.4
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..+||||+..++.|-+. ..|+.+++.++.+++..+=|+.+...+.|.++++.
T Consensus 162 pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5778999999999988653 46999999999999888878888888899988865
No 114
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=63.26 E-value=1.5 Score=40.86 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=0.0
Q ss_pred cCCHHhhhcCCCCCHHHHHHHHHH-hc
Q 017612 246 DASMEDLARCPGIGERKVKRLYDT-FH 271 (368)
Q Consensus 246 ~AS~EELa~VPGIG~kKA~rI~e~-F~ 271 (368)
.|+..+|..|||||+++|++|++. |.
T Consensus 11 ~a~~~~L~~IpGIGpk~a~~Ll~~gf~ 37 (241)
T 1vq8_Y 11 EEEYTELTDISGVGPSKAESLREAGFE 37 (241)
T ss_dssp ---------------------------
T ss_pred ccchhHHhcCCCCCHHHHHHHHHcCCC
Confidence 455678999999999999999997 53
No 115
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=62.84 E-value=5.9 Score=37.21 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=41.5
Q ss_pred ccHHHHHHHhhccCCCCCHHH----HHHHHHhcC--------------CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKTD----VVTLGSTFG--------------SLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKTD----A~~LLs~FG--------------SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++-+ ..++-.. ..+|..+|| +.+.|..++.++|..| |+|- ||+.|+++.+
T Consensus 113 ~dpfE~Lv~~Ils-Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~~~-g~g~-Ra~~I~~~A~ 189 (290)
T 3i0w_A 113 QDPFEILLSFIIS-ANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEEC-TAGF-RAKYLKDTVD 189 (290)
T ss_dssp CCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHHHT-TCGG-GHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHHHc-CCch-HHHHHHHHHH
Confidence 4566666665532 2344443 445666655 8999999999999996 8996 7999987654
No 116
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=62.73 E-value=4.4 Score=37.59 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCCCCCHHHHHHHHHh
Q 017612 212 YLSRLTHALTSVRSVNKTDVVTLGST 237 (368)
Q Consensus 212 y~srL~saLTsIpgVnKTDA~~LLs~ 237 (368)
..++|++.|..+||||++.|++|.-|
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~h 45 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFF 45 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35677777777777777777777655
No 117
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=62.42 E-value=3.8 Score=39.86 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.1
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
+.++|..+||||++.|+.|.+++..
T Consensus 59 ~~~~l~~lpGIG~~~A~kI~E~l~t 83 (360)
T 2ihm_A 59 SLSQLHGLPYFGEHSTRVIQELLEH 83 (360)
T ss_dssp SGGGGTTCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHHHc
Confidence 4557999999999999999999874
No 118
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=62.31 E-value=9.3 Score=36.18 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=44.5
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-+..|+|||+..+.+|-. -..|+.+|..++.+.|... +|.+....|++..+.
T Consensus 179 pv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~a~G 231 (356)
T 4dez_A 179 PPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTA--FGPSTGLWLLLLAKG 231 (356)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHH--HCHHHHHHHHHHHTT
T ss_pred cHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHH--hCChHHHHHHHHHcC
Confidence 456799999999988865 4669999999999999999 898888999888753
No 119
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=62.30 E-value=8.3 Score=37.54 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=27.4
Q ss_pred HHHHhcCC---HHHHHcCC----HHhhhcCCCCCHHHHHHHHHH-hcc
Q 017612 233 TLGSTFGS---LSHIMDAS----MEDLARCPGIGERKVKRLYDT-FHE 272 (368)
Q Consensus 233 ~LLs~FGS---Lk~I~~AS----~EELa~VPGIG~kKA~rI~e~-F~e 272 (368)
.+++.||. ++.+...+ .++|..+||||++.|.-|.-+ |+.
T Consensus 229 ~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 229 AILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDK 276 (360)
T ss_dssp HHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCC
T ss_pred HHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Confidence 33444543 45554444 578999999999999999765 443
No 120
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=62.11 E-value=7.6 Score=35.44 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCHHHHHHHHH---hcCCHHHHHcCC----HHhhh-cCCCCCHHHHHHHHHHhc
Q 017612 226 VNKTDVVTLGS---TFGSLSHIMDAS----MEDLA-RCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 226 VnKTDA~~LLs---~FGSLk~I~~AS----~EELa-~VPGIG~kKA~rI~e~F~ 271 (368)
..+..|+.|.. .+|.+.++...+ .++|. .+||||++.|.-+..++.
T Consensus 98 f~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g 151 (219)
T 3n0u_A 98 YPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTG 151 (219)
T ss_dssp SHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 44667766554 456677777655 46799 999999999999987653
No 121
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=62.08 E-value=5 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.9
Q ss_pred HcCCHHhhhcCCCCCHHHHHHH
Q 017612 245 MDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 245 ~~AS~EELa~VPGIG~kKA~rI 266 (368)
.-.+.++|..|+|||+.|+++.
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~y 73 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAML 73 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHHT
T ss_pred CCCCHHHHhcCCCCCHHHHHHH
Confidence 3458899999999999999875
No 122
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=61.72 E-value=4.3 Score=37.17 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.8
Q ss_pred HhhhcCCCCCHHHHHHHHHHhccc
Q 017612 250 EDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 250 EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
..|..|+|||++.|.+|.+.|...
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHhcCcCCcCHHHHHHHHHhCCHH
Confidence 358889999999999999998763
No 123
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=61.43 E-value=4.7 Score=39.61 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=43.7
Q ss_pred hhccCCCCCHHHHHHHHHhc---CCHHHHHcC-CHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 219 ALTSVRSVNKTDVVTLGSTF---GSLSHIMDA-SMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~F---GSLk~I~~A-S~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
-|+.++|||+..+.+|..+| .|+.+|..+ +.+.|... +|.+...++++..+
T Consensus 242 pv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~--fG~~~g~~l~~~a~ 296 (434)
T 2aq4_A 242 KLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKAS--VGSKLGMKIHLALQ 296 (434)
T ss_dssp CGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHH--HCSSHHHHHHHHTT
T ss_pred CcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHH--hCHHHHHHHHHHhc
Confidence 46789999999999999965 799999999 99999988 77777778887775
No 124
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=58.14 E-value=14 Score=42.72 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=49.6
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.|..|||||+..|+.|.++ +.|+.+|+.++.++|..+=|+++.....|.++++.
T Consensus 1558 ~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~ 1612 (1724)
T 4f92_B 1558 YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 1612 (1724)
T ss_dssp GGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred CEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHh
Confidence 5778999999999999874 88999999999999999999999999999998863
No 125
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=57.99 E-value=12 Score=33.58 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHcCCHHhhhc---CCCCCHHHHHHHHHHhc
Q 017612 232 VTLGSTFGSLSHIMDASMEDLAR---CPGIGERKVKRLYDTFH 271 (368)
Q Consensus 232 ~~LLs~FGSLk~I~~AS~EELa~---VPGIG~kKA~rI~e~F~ 271 (368)
.+|...|.+.++|..++.++|.. --|+. .||+.|+++..
T Consensus 53 ~~l~~~~pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~ 94 (225)
T 1kg2_A 53 ERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQ 94 (225)
T ss_dssp HHHHHHCSSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence 46889999999999999999975 34666 68999887664
No 126
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=57.99 E-value=5.9 Score=37.13 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHHhhccCCCCCHHHHHHHHHh
Q 017612 213 LSRLTHALTSVRSVNKTDVVTLGST 237 (368)
Q Consensus 213 ~srL~saLTsIpgVnKTDA~~LLs~ 237 (368)
.++|++.|..+||||++.|++|.=|
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~h 31 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFH 31 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 3556666666666666666666544
No 127
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=57.69 E-value=9.4 Score=28.78 Aligned_cols=22 Identities=27% Similarity=0.724 Sum_probs=18.6
Q ss_pred HcCCHHhhhcCCCCCHHHHHHH
Q 017612 245 MDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 245 ~~AS~EELa~VPGIG~kKA~rI 266 (368)
.-.+.++|..|+|||+.|+++.
T Consensus 42 ~P~t~~eL~~i~Gvg~~k~~~y 63 (77)
T 2rhf_A 42 QPRTLAELAEVPGLGEKRIEAY 63 (77)
T ss_dssp CCCSHHHHTTSTTTCHHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHHH
Confidence 3468899999999999998874
No 128
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=57.40 E-value=4.1 Score=36.24 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.3
Q ss_pred ccHHHHHHHhhccCCCCCHHHHH----HHHHhcCCHHHHHcCCHHhhhc-CC--CCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKTDVV----TLGSTFGSLSHIMDASMEDLAR-CP--GIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKTDA~----~LLs~FGSLk~I~~AS~EELa~-VP--GIG~kKA~rI~e~F~ 271 (368)
.++.+.++.++- ...++-..+. +|...|.+.++|..++.++|.. +. |+...||+.|+++..
T Consensus 27 ~~pfe~lv~~Il-~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 94 (211)
T 2abk_A 27 SSPFELLIAVLL-SAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCR 94 (211)
T ss_dssp SSHHHHHHHHHH-TTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345555555442 2234333333 4666789999999999999865 33 556689999987764
No 129
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=57.32 E-value=5.9 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.5
Q ss_pred cCCHHhhhcCCCCCHHHHHHHHHHhc--ccccc
Q 017612 246 DASMEDLARCPGIGERKVKRLYDTFH--EPFKR 276 (368)
Q Consensus 246 ~AS~EELa~VPGIG~kKA~rI~e~F~--ePF~~ 276 (368)
.|+.++|..|+|||+++|++|.++-. .+|..
T Consensus 504 tAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~s 536 (785)
T 3bzc_A 504 TASAALLARISGLNSTLAQNIVAHRDANGAFRT 536 (785)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSS
T ss_pred cCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCC
Confidence 48999999999999999999998864 36653
No 130
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=56.26 E-value=25 Score=34.51 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=65.5
Q ss_pred hccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccccccCCCCCCCCCCCCccccCCCCc
Q 017612 220 LTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFKRVVSSHPPIPETPSQKDVERSSV 298 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~~~~~s~~~~~~~~~~~~~~~~~~ 298 (368)
|..|+|||+..+++|-.. ..|+.+|..++.+.|... +|...++.|++..+.--. +++.+.. .+.+.
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~~a~G~d~-----~~V~~~~------~~kSi 302 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE--LGISVAQRIQKLSFGEDN-----SPVILSG------PPQSF 302 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH--HHHHHHHHHHHHHTTCCC-----CCCCCCC------SCSEE
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHH--hCchHHHHHHHHhcCCCc-----cccCCCC------CCCce
Confidence 678999999999988542 449999999999999988 888889999998642211 1221111 11111
Q ss_pred cchhhccccchHHHHhhhccchhhHHHHHHHHHHHHHHHhhcccCCcc
Q 017612 299 NEVTEVEKDTEDVNKRRKKETESTVKSALSAAFAKYADKIGKKKNRSS 346 (368)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (368)
. .+ .+. .+ -...-.++.+|.....+.+.|+++++....
T Consensus 303 ~--~e-~tf-~~------~~~~~~~~~~l~~La~~l~~rLr~~~~~~~ 340 (420)
T 3osn_A 303 S--EE-DSF-KK------CSSEVEAKNKIEELLASLLNRVCQDGRKPH 340 (420)
T ss_dssp E--EE-EEC-SS------CCCSSSHHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred e--ee-eeC-CC------CCCHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 0 00 000 00 011234667787788888888887775443
No 131
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=56.17 E-value=10 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=45.1
Q ss_pred ccHHHHHHHhhccCCCCCHH----HHHHHHHhcC--------------CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 210 TDYLSRLTHALTSVRSVNKT----DVVTLGSTFG--------------SLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKT----DA~~LLs~FG--------------SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
.+..+.++.++-+ ..++-. -..+|..+|| +.+.|..++.++|..| |++..||+.|+++..
T Consensus 116 ~d~fe~lv~~Il~-Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~Lr~~-G~~~rKa~~i~~~A~ 193 (295)
T 2jhn_A 116 MSVFEGIAKAIIQ-QQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEGLREC-GLSRRKAELIVEIAK 193 (295)
T ss_dssp SSHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc-CcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHH
Confidence 4566666665532 234433 3456777754 7999999999999775 899999999999987
Q ss_pred c
Q 017612 272 E 272 (368)
Q Consensus 272 e 272 (368)
.
T Consensus 194 ~ 194 (295)
T 2jhn_A 194 E 194 (295)
T ss_dssp C
T ss_pred C
Confidence 6
No 132
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=56.15 E-value=5.5 Score=39.12 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.8
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
+.++|..+||||++.|+.|.+++..
T Consensus 78 ~~~~l~~lpGIG~~ia~kI~E~l~t 102 (381)
T 1jms_A 78 SMKDTEGIPCLGDKVKSIIEGIIED 102 (381)
T ss_dssp SGGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3456999999999999999999874
No 133
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=55.97 E-value=7.9 Score=34.18 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=39.5
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
++..+||.|.|||...|..||..+|= +.-..+--+.+.-+.+|.+++..|.
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~gi---------d~~~r~~~Lt~~ei~~l~~~i~~p~ 77 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLKI---------DPNARAGLLTEDQCNKITDLIADPE 77 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTC---------CSSSCSSCSCHHHHHHHHHHHHSHH
T ss_pred EEEEeeecccccCHHHHHHHHHHcCC---------CcccccccCCHHHHHHHHHHHhCcc
Confidence 46779999999999999999998762 2234555567777888888887754
No 134
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=55.91 E-value=8.2 Score=29.85 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.8
Q ss_pred HHcCCHHhhhcCCCCCHHHHHHH
Q 017612 244 IMDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 244 I~~AS~EELa~VPGIG~kKA~rI 266 (368)
..-.+.++|..|+|||+.|+++.
T Consensus 43 ~~P~t~~eL~~i~Gvg~~k~~~y 65 (85)
T 2kv2_A 43 SLSSDPEVLLQIDGVTEDKLEKY 65 (85)
T ss_dssp HCCSCHHHHHTSSSCCHHHHHHT
T ss_pred hCCCCHHHHhhCCCCCHHHHHHH
Confidence 34558899999999999988774
No 135
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=55.45 E-value=7.2 Score=34.76 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.1
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHh
Q 017612 248 SMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F 270 (368)
..++|..+||||++.|..|..++
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~~ 137 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRNV 137 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHh
Confidence 45789999999999999998763
No 136
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=54.94 E-value=9 Score=32.19 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHh
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTF 270 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F 270 (368)
++..+||.|.|||.+.|..||...| .+.-..+--+.+.-+.+|.+++
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~g---------id~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAG---------IAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTT---------CCTTCCSTTCCHHHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcC---------cCcccCcccCCHHHHHHHHHHH
Confidence 4678999999999999999999876 2233445556666677777777
No 137
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=54.58 E-value=4.5 Score=44.89 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.7
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHh---ccccc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTF---HEPFK 275 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F---~ePF~ 275 (368)
+...|.-|+|||++||++|.++. +.+|.
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~ 745 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLL 745 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCC
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 67899999999999999999988 46775
No 138
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=54.55 E-value=13 Score=33.50 Aligned_cols=42 Identities=26% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHh-cCC------HHHHHcCCHHhhhc---CCCCCHHHHHHHHHHhc
Q 017612 230 DVVTLGST-FGS------LSHIMDASMEDLAR---CPGIGERKVKRLYDTFH 271 (368)
Q Consensus 230 DA~~LLs~-FGS------Lk~I~~AS~EELa~---VPGIG~kKA~rI~e~F~ 271 (368)
-..+|.+. |.+ .++|..++.++|.. --|+...||+.|+++..
T Consensus 51 ~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~ 102 (218)
T 1pu6_A 51 SLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSG 102 (218)
T ss_dssp HHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 34567777 999 99999999999853 34888889999987764
No 139
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=53.67 E-value=19 Score=33.35 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=43.0
Q ss_pred ccHHHHHHHhhccCCCCCHHHHH----HHHHhcC-------------CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 210 TDYLSRLTHALTSVRSVNKTDVV----TLGSTFG-------------SLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 210 ~dy~srL~saLTsIpgVnKTDA~----~LLs~FG-------------SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+..+.++.++-+ ..++-..|. +|..+|| +.+.|..++.++|..| |+...||+.|+++...
T Consensus 111 ~d~fe~lv~~Il~-Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~-G~~~~ra~~i~~~A~~ 188 (282)
T 1mpg_A 111 VDAFEQGVRAILG-QLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKAL-GMPLKRAEALIHLANA 188 (282)
T ss_dssp SCHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 4666766666532 245555444 4555555 8999999999999665 8888999999887653
No 140
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=53.51 E-value=11 Score=29.34 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=18.4
Q ss_pred HcCCHHhhhcCCCCCHHHHHHH
Q 017612 245 MDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 245 ~~AS~EELa~VPGIG~kKA~rI 266 (368)
+-.+.++|..|+|||+.|+++-
T Consensus 50 ~P~t~~eL~~i~Gvg~~k~~~y 71 (89)
T 1wud_A 50 MPITASEMLSVNGVGMRKLERF 71 (89)
T ss_dssp CCCSHHHHHTSTTCCHHHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHHHH
Confidence 3458899999999999998773
No 141
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=52.46 E-value=7.8 Score=34.27 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHhcCCHHHHH------------cCC-----HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 224 RSVNKTDVVTLGSTFGSLSHIM------------DAS-----MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 224 pgVnKTDA~~LLs~FGSLk~I~------------~AS-----~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
..=+..++..++..+....+-. ..+ ...|..|||||++.|++|.+.|..
T Consensus 119 ~t~s~~eta~~l~~l~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 119 NTMDPKGTALVIESLARLSTREGGQRIVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp EESSHHHHHHHHHHHHHHHSCBCCTTCCCCCCCCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred EcCCHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 3347788887877665543100 001 234889999999999999999976
No 142
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=51.91 E-value=0.83 Score=42.95 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=31.0
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
+++++++++ ...|+.|||||+.+|..|.+.+..|+.
T Consensus 223 ~~~tv~~v~---~~~L~~I~GVs~~~A~~I~~~ypTp~~ 258 (307)
T 2zix_A 223 KAQSVREVF---ARQLMQVRGVSGEKAAALVDRYSTPAS 258 (307)
T ss_dssp TSCCTTTHH---HHTTTCSTTCCSTTTTTSSSSSCSHHH
T ss_pred cCCcHHHHH---HHHHHhccCCCHHHHHHHHHHcCCHHH
Confidence 567778877 689999999999999999988887764
No 143
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=51.63 E-value=6.1 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred CHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 240 SLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 240 SLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
.+..|+.-+.+-+-.|||||+++|.+|.+-+..
T Consensus 193 D~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gs 225 (290)
T 1exn_A 193 SLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGN 225 (290)
T ss_dssp HHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCS
T ss_pred HHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCC
Confidence 345666767788999999999999999987754
No 144
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=49.49 E-value=36 Score=32.47 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHhcCCHHHHHcCCHHhhhcC-C--CCCHHHHHHHHHHhc
Q 017612 233 TLGSTFGSLSHIMDASMEDLARC-P--GIGERKVKRLYDTFH 271 (368)
Q Consensus 233 ~LLs~FGSLk~I~~AS~EELa~V-P--GIG~kKA~rI~e~F~ 271 (368)
+|..+|.++++|..|+.++|..+ . |+.. ||+.|+++..
T Consensus 63 ~l~~~~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~ 103 (369)
T 3fsp_A 63 QFIDRFPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVK 103 (369)
T ss_dssp HHHHHCCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHH
Confidence 68899999999999999998653 3 5555 8999887654
No 145
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=48.62 E-value=13 Score=32.50 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=39.5
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
.+..+||.|.|||++.|..+|...| .+.-..+--+.+.-+.+|.+++..|
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~g---------id~~~r~g~Lt~~ei~~l~~~i~~~ 76 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKAD---------VDLHKRAGELTQEELERIVQIMQNP 76 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHT---------CCTTSCSSSCCHHHHHHHHHHHTCT
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcC---------CCCCceeccCCHHHHHHHHHHHHhh
Confidence 3567999999999999999998865 2333555567777888899999765
No 146
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.59 E-value=13 Score=32.82 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=38.9
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
++..+||.|.|||.+.|..+|...| .+.-..+--+.+.-+.+|.+++..|
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~g---------id~~~r~g~Lt~~ei~~l~~~i~~~ 74 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKAD---------IDMNKRAGELSAEEMDRLMAVVHNP 74 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHHT---------CCSSSBTTTSCHHHHHHHHHHHHSC
T ss_pred EeHhhhhhccCcCHHHHHHHHHHcC---------CCCCcEeCcCCHHHHHHHHHHHHhh
Confidence 4678999999999999999998866 2233455556677778889988765
No 147
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=47.38 E-value=6.8 Score=44.24 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.6
Q ss_pred CHHhhhcCCCCCHHHHHHHHHHh---ccccc
Q 017612 248 SMEDLARCPGIGERKVKRLYDTF---HEPFK 275 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~F---~ePF~ 275 (368)
+...|.-|+|||++||++|.++. +.+|.
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~ 742 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLL 742 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 57899999999999999999888 46775
No 148
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=46.66 E-value=26 Score=35.65 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=43.3
Q ss_pred hhccCCCCCHHHHHHHHHh-cCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 219 ALTSVRSVNKTDVVTLGST-FGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~-FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
-|..|+|||+..+.+|-.. ..|+.+|..++.+.|... +|...+..|++..+
T Consensus 316 PV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~--fG~~~g~~L~~~a~ 367 (504)
T 3gqc_A 316 LVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE--FGPKTGQMLYRFCR 367 (504)
T ss_dssp BGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHH--HCHHHHHHHHHHTT
T ss_pred ChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHh--hChhHHHHHHHHhc
Confidence 5678899999999887652 559999999999999999 89888999987654
No 149
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=46.34 E-value=1.1 Score=48.35 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=25.4
Q ss_pred hccCCCCCHHHHHHHHHhcCCHHHHHcC
Q 017612 220 LTSVRSVNKTDVVTLGSTFGSLSHIMDA 247 (368)
Q Consensus 220 LTsIpgVnKTDA~~LLs~FGSLk~I~~A 247 (368)
+.+|||||.+.|..||+.|||+++|+..
T Consensus 193 ipGVpGIG~KtA~kLl~~~gsle~i~~~ 220 (832)
T 1bgx_T 193 LPGVKGIGEKTARKLLEEWGSLEALLKN 220 (832)
T ss_dssp CCCCCCSSSCTTTTTGGGTTSSCSSSSS
T ss_pred CCCCCCcCchHHHHHHHHCCCHHHHHHH
Confidence 4579999999999999999999999865
No 150
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=46.26 E-value=14 Score=29.83 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.7
Q ss_pred HHcCCHHhhhcCCCCCHHHHHHH
Q 017612 244 IMDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 244 I~~AS~EELa~VPGIG~kKA~rI 266 (368)
..-.+.++|..|+|||+.|+++-
T Consensus 58 ~~P~t~~eL~~I~Gvg~~k~~~y 80 (101)
T 2rrd_A 58 SLSSDPEVLLQIDGVTEDKLEKY 80 (101)
T ss_dssp HCCCCHHHHHTSTTCCHHHHHHT
T ss_pred hCCCCHHHHhhCCCCCHHHHHHH
Confidence 34558899999999999998764
No 151
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=44.97 E-value=15 Score=34.97 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHhcCCHHHHHcCCHHhhhcC-C--CCCHHHHHHHHHHhc
Q 017612 232 VTLGSTFGSLSHIMDASMEDLARC-P--GIGERKVKRLYDTFH 271 (368)
Q Consensus 232 ~~LLs~FGSLk~I~~AS~EELa~V-P--GIG~kKA~rI~e~F~ 271 (368)
.+|.+.|.+++.|..|+.++|..+ . |+.. ||+.|+++.+
T Consensus 72 ~rL~~~fptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~ 113 (287)
T 3n5n_X 72 TGWMQKWPTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGAR 113 (287)
T ss_dssp HHHHHHCCSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHH
Confidence 468899999999999999998653 4 4544 8999887654
No 152
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=44.85 E-value=16 Score=33.96 Aligned_cols=19 Identities=42% Similarity=0.760 Sum_probs=17.1
Q ss_pred HhhhcCCCCCHHHHHHHHH
Q 017612 250 EDLARCPGIGERKVKRLYD 268 (368)
Q Consensus 250 EELa~VPGIG~kKA~rI~e 268 (368)
++|.++||||+|.|+||-=
T Consensus 26 ~~l~~LPGIG~KsA~RlA~ 44 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAF 44 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHH
Confidence 6899999999999999943
No 153
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=43.66 E-value=19 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.4
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 249 MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...|..|||||++.|+.|.+.|..
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~FgS 190 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFGS 190 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCS
T ss_pred cccccCCCCcCHHHHHHHHHHcCC
Confidence 457999999999999999999964
No 154
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=43.53 E-value=8.2 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcC
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFG 239 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FG 239 (368)
++..+||.|.|||.+.|..+|..+|
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~g 38 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTG 38 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTT
T ss_pred EeeeehhccccccHHHHHHHHHHcC
Confidence 3677999999999999999999887
No 155
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.95 E-value=13 Score=32.63 Aligned_cols=51 Identities=16% Similarity=0.358 Sum_probs=38.8
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcccc
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEPF 274 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ePF 274 (368)
.+..+||.|.|||...|..||...| .+.-..+--+.+.-+.+|.+++..|+
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~g---------id~~~r~g~Lt~~ei~~i~~~i~~~~ 70 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAG---------LDPFMKAGYLTDEQVKKIEEILADPV 70 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHT---------CCSSSCTTBCCHHHHHHHHHHHHCHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHhC---------CCCCceeccCCHHHHHHHHHHHhccc
Confidence 4678999999999999999998865 22234455566677788888887764
No 156
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=42.73 E-value=18 Score=34.19 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=42.8
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|+.++|||+..+.+|-. -..|+.+|..++.+.|... +|...+.++++..+.
T Consensus 180 pv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a~G 232 (354)
T 3bq0_A 180 DIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKI--TGKAKALYLLKLAQN 232 (354)
T ss_dssp BSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHHHHTT
T ss_pred CcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHH--HCHHHHHHHHHHhCC
Confidence 577899999988888743 2449999999999999998 888878888888853
No 157
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=39.60 E-value=28 Score=30.88 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHHHhhccCCCCCHHHHHHHHHhcCC
Q 017612 215 RLTHALTSVRSVNKTDVVTLGSTFGS 240 (368)
Q Consensus 215 rL~saLTsIpgVnKTDA~~LLs~FGS 240 (368)
.....|.++||||+..|.-+|..+|-
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 45677889999999999999876454
No 158
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=39.50 E-value=15 Score=33.94 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred HHhhhcCCCCCHHHHHHHHHH
Q 017612 249 MEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~ 269 (368)
.++|..+||||++.|.-|.-+
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 578999999999999998764
No 159
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=38.87 E-value=22 Score=33.37 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=17.1
Q ss_pred HhhhcCCCCCHHHHHHHHH
Q 017612 250 EDLARCPGIGERKVKRLYD 268 (368)
Q Consensus 250 EELa~VPGIG~kKA~rI~e 268 (368)
++|.++||||+|.|+||-=
T Consensus 12 ~~l~~LPGIG~KSA~RlA~ 30 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAF 30 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHH
Confidence 7899999999999999943
No 160
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=38.51 E-value=6.4 Score=32.61 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=18.6
Q ss_pred HHcCCHHhhhcCCCCCHHHHHHH
Q 017612 244 IMDASMEDLARCPGIGERKVKRL 266 (368)
Q Consensus 244 I~~AS~EELa~VPGIG~kKA~rI 266 (368)
..-.+.++|..|.|||+.|+++-
T Consensus 58 ~~P~t~~eL~~I~Gvg~~K~~~y 80 (113)
T 2dgz_A 58 MRPTTVENVKRIDGVSEGKAAML 80 (113)
T ss_dssp HCCCSHHHHHHSSSCCTTGGGGG
T ss_pred hCCCCHHHHHhCCCCCHHHHHHH
Confidence 34458899999999999888654
No 161
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=37.58 E-value=6.9 Score=36.27 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=0.0
Q ss_pred HHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 249 MEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 249 ~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...|..|||||++.|+.|.+.|..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~FGS 195 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYFGS 195 (226)
T ss_dssp ------------------------
T ss_pred cccccccCCCCHHHHHHHHHHhCC
Confidence 457999999999999999999864
No 162
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=37.56 E-value=6.9 Score=38.15 Aligned_cols=37 Identities=11% Similarity=0.375 Sum_probs=0.0
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhccc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHEP 273 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~eP 273 (368)
...++.++++-|++||.++++||++-.+.|.+.|.+-
T Consensus 274 ~I~tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~~ 310 (329)
T 3lu0_A 274 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 310 (329)
T ss_dssp -------------------------------------
T ss_pred CCcCHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHHc
Confidence 4568999999999999999999999999999999763
No 163
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=35.05 E-value=19 Score=33.99 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=42.9
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
-|+.++|||+..+.+|-. -..|+.+|...+.+.|... +|...+.++++..+.
T Consensus 179 pv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a~G 231 (352)
T 1jx4_A 179 DIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGM--IGEAKAKYLISLARD 231 (352)
T ss_dssp BGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHH--HCHHHHHHHHHHHTT
T ss_pred CCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHh--cChhHHHHHHHHhCC
Confidence 477899999988888744 3558999999999999998 888878888888854
No 164
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=33.72 E-value=21 Score=29.15 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred HHHHcCCH--HhhhcCCCCCHHHHHHHHH
Q 017612 242 SHIMDASM--EDLARCPGIGERKVKRLYD 268 (368)
Q Consensus 242 k~I~~AS~--EELa~VPGIG~kKA~rI~e 268 (368)
++.+...+ .++..|||||+..+++|-+
T Consensus 8 ~~Fv~EPmgeK~V~evpGIG~~~~~~L~~ 36 (89)
T 1ci4_A 8 RDFVAEPMGEKPVGSLAGIGEVLGKKLEE 36 (89)
T ss_dssp HHHHTSCCTTCCGGGSTTCCHHHHHHHHH
T ss_pred HHHHhCCCCCCCcccCCCcCHHHHHHHHH
Confidence 44455543 4689999999999999976
No 165
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=32.89 E-value=34 Score=34.85 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.5
Q ss_pred hhccCCCCCHHHHHHHHHhcC-----CH-----------HHHHcCCHHhhhcCCCCCH------------HHHHHHHHHh
Q 017612 219 ALTSVRSVNKTDVVTLGSTFG-----SL-----------SHIMDASMEDLARCPGIGE------------RKVKRLYDTF 270 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs~FG-----SL-----------k~I~~AS~EELa~VPGIG~------------kKA~rI~e~F 270 (368)
-|+.|+|||+..+.+|...|| |+ .+|...+.+.|.+. +|. +.+.+|++..
T Consensus 308 PV~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~~~~~L~~~--fG~~~~~~~d~~~~g~~g~~L~~~a 385 (520)
T 3mfi_A 308 EITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQS--DYDRSTSNIDPLKTADLAEKLFKLS 385 (520)
T ss_dssp CGGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHHHHHHHHST--TCC---CCCCTTCHHHHHHHHHHHT
T ss_pred cHHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhcCHHHHHHh--cCccccccccchhhhHHHHHHHHHh
Confidence 467899999999999999874 44 45555555556655 443 6788888887
Q ss_pred cc
Q 017612 271 HE 272 (368)
Q Consensus 271 ~e 272 (368)
+.
T Consensus 386 rG 387 (520)
T 3mfi_A 386 RG 387 (520)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 166
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=32.55 E-value=16 Score=29.42 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.6
Q ss_pred CHHhhhcCCCCCHHHHHHHHHH
Q 017612 248 SMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~ 269 (368)
|..+|..+|+||++.++.|.++
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v 23 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA 23 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT
T ss_pred ChHHhhcCCCCCHHHHHHHHHc
Confidence 4568889999999998888654
No 167
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=30.25 E-value=22 Score=34.00 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=43.4
Q ss_pred hhccCCCCCHHHHHHHHH-hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhc
Q 017612 219 ALTSVRSVNKTDVVTLGS-TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFH 271 (368)
Q Consensus 219 aLTsIpgVnKTDA~~LLs-~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~ 271 (368)
-|..++|||+..+..|-. -..|+.+|..++.+.|... +|++.+.+|++..+
T Consensus 180 pv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~a~ 231 (362)
T 4f4y_A 180 DIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKI--TGKAKALYLLKLAQ 231 (362)
T ss_dssp BSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHH--HCHHHHHHHHHHHT
T ss_pred ChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHH--hChHHHHHHHHHhc
Confidence 566789999999888775 3669999999999999988 89888999998764
No 168
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=29.61 E-value=21 Score=34.40 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 241 LSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 241 Lk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
+..|+..+. +-.|||||+++|-+|..-+..
T Consensus 225 ~~~L~G~D~--~~gipGiG~KtA~kll~~~gs 254 (341)
T 3q8k_A 225 LCILLGSDY--CESIRGIGPKRAVDLIQKHKS 254 (341)
T ss_dssp HHHHHCCSS--SCCCTTCCHHHHHHHHHHHCS
T ss_pred HHHhcCCCC--CCCCCCccHHHHHHHHHHcCC
Confidence 344444332 347999999999999877653
No 169
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=27.83 E-value=13 Score=35.98 Aligned_cols=36 Identities=25% Similarity=0.582 Sum_probs=0.0
Q ss_pred hcCCHHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 237 TFGSLSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 237 ~FGSLk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...++.+++.-|++||.+++++|.|-+..|.+.|.+
T Consensus 273 ~I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~~~L~~ 308 (315)
T 2a6h_A 273 GIESVRALLALNLKDLKNIPGIGERSLEEIKEALEK 308 (315)
T ss_dssp ------------------------------------
T ss_pred CCcCHHHHhhCCHHHHhcCCCCCcchHHHHHHHHHH
Confidence 467899999999999999999999999999999974
No 170
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=27.02 E-value=47 Score=30.15 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=22.3
Q ss_pred HHHHHhhc-cCCCCCHHHHHHHHHhcCC
Q 017612 214 SRLTHALT-SVRSVNKTDVVTLGSTFGS 240 (368)
Q Consensus 214 srL~saLT-sIpgVnKTDA~~LLs~FGS 240 (368)
......|. ++||||+..|.-+|..||-
T Consensus 125 ~~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 125 FQSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 44567787 9999999999998877775
No 171
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.48 E-value=22 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=16.5
Q ss_pred CHHhhhcCCCCCHHHHHHHHHH
Q 017612 248 SMEDLARCPGIGERKVKRLYDT 269 (368)
Q Consensus 248 S~EELa~VPGIG~kKA~rI~e~ 269 (368)
|+.+|..+|+||++.++.|.++
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~ 23 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA 23 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT
T ss_pred CHHHHhhCCCCCHHHHHHHHHc
Confidence 4567888888888888887653
No 172
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=25.03 E-value=30 Score=29.29 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.0
Q ss_pred cccceEeccceeeeee-chhhHHHHHHHHHHhhcC
Q 017612 166 VVCDYLVGQNSCALYL-SLEECGRYLETIKVYENK 199 (368)
Q Consensus 166 IvpDY~Ig~ttcILFL-S~EEAArYIEt~K~~E~K 199 (368)
+..+|.+ .|+|+ +.+|+|+||..++..|+.
T Consensus 104 ~~~~~g~----~vi~t~~~~~Ta~~l~~l~~~~q~ 134 (143)
T 1j23_A 104 VTVDFGV----PIIFSSTPEETAQYIFLIAKREQE 134 (143)
T ss_dssp HHHTSCC----CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCe----eEEEcCCHHHHHHHHHHHHHhhcc
Confidence 4466777 79999 599999999999998864
No 173
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.02 E-value=37 Score=31.53 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=23.2
Q ss_pred HhhhcCCCCCHHHHHHHHHHhccccc
Q 017612 250 EDLARCPGIGERKVKRLYDTFHEPFK 275 (368)
Q Consensus 250 EELa~VPGIG~kKA~rI~e~F~ePF~ 275 (368)
..|..||||++.+|..|.+.+..|..
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ypTp~~ 262 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEHYSTVSS 262 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHHCSSHHH
T ss_pred HHHHhccCCCHHHHHHHHHHCCCHHH
Confidence 57999999999999999999987754
No 174
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=24.42 E-value=27 Score=33.01 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=26.9
Q ss_pred HHHHHHhcC-C------HHHHHcCCHHhhhcCCCCCHHHHHHHHHHhcc
Q 017612 231 VVTLGSTFG-S------LSHIMDASMEDLARCPGIGERKVKRLYDTFHE 272 (368)
Q Consensus 231 A~~LLs~FG-S------Lk~I~~AS~EELa~VPGIG~kKA~rI~e~F~e 272 (368)
...++++|| + +..|+. .+-+-.|||||+++|-+|..-+..
T Consensus 211 ~~~v~~~~gl~~~q~id~~~L~G--sD~ipGv~GiG~KtA~kLl~~~gs 257 (336)
T 1rxw_A 211 LESNLKRLGLTREQLIDIAILVG--TDYNEGVKGVGVKKALNYIKTYGD 257 (336)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHC--BTTBCCCTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHhhcC--CCCCCCCCCcCHHHHHHHHHHcCC
Confidence 345555555 3 333344 356778999999999999877643
Done!