BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017613
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 286
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/321 (36%), Positives = 169/321 (52%), Gaps = 38/321 (11%)
Query: 47 GLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQN 106
G+RE++ RI SVKNT++IT+AMK+VAAAK+RRAQE N RP+++ + EV+ +I
Sbjct: 3 GMREIKRRIRSVKNTRQITKAMKMVAAAKLRRAQETAENARPYADKIKEVISSI--AAGT 60
Query: 107 EDIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGK 166
+D P++ T DRGL G +N NI++ I E +Y I +VG+
Sbjct: 61 KDFSHPMLEARPVKKTGYMVITSDRGLAGPYNANILRLVSKTIEERHQSKDEYVIFAVGR 120
Query: 167 KGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVK 226
KG +F +R Y V+ P+ E Q IA +F E DK+ + Y +FVS +
Sbjct: 121 KGRDFFKKRGYPVVEEVTGISDTPSLTEIQDIAQSAIGMFADETFDKLTIFYNEFVSPIV 180
Query: 227 SDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPIL 286
PV LLPL+ E+ D G ++
Sbjct: 181 QRPVEKQLLPLTSE-EVLD--------------------GPVSA---------------Y 204
Query: 287 QFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYN 346
++E D +L+ LLP Y + I AL ++ ASE +RM+AM NATDNA E+ + L++ +N
Sbjct: 205 EYEPDSESVLEVLLPKYAETLIYSALLDAKASEFGARMTAMGNATDNATEMLETLTLQFN 264
Query: 347 RQRQAKITGEILEIVAGADAL 367
R RQA IT EI EIVAGA+AL
Sbjct: 265 RARQAAITQEIAEIVAGANAL 285
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|O Chain O, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|W Chain W, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|EE Chain e, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 286
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 166/325 (51%), Gaps = 42/325 (12%)
Query: 46 CGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 105
G +E+R +I SV+NTQKIT+AM++VAA+K+R++Q+ + RP++ET+ +V+ ++
Sbjct: 1 AGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAH--G 58
Query: 106 NEDIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTL---GLDYTII 162
N + P + + DRGLCGG N N+ KK +AE+KT G+ +
Sbjct: 59 NLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKL---LAEMKTWTDKGVQCDLA 115
Query: 163 SVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFV 222
+G KG ++F V + G P+ E + + +DK+ ++ KF+
Sbjct: 116 MIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFI 175
Query: 223 SLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASF 282
+ + P I LLPL A++D+ + + +
Sbjct: 176 NTMSQVPTISQLLPLP--------------ASDDDDLKHKSWD----------------- 204
Query: 283 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342
+E DP +LD LL Y+ SQ+ + + E+LASE A+RM AM ATDN L K L
Sbjct: 205 ---YLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261
Query: 343 IVYNRQRQAKITGEILEIVAGADAL 367
+VYN+ RQA IT E+ EIV+GA A+
Sbjct: 262 LVYNKARQASITQELTEIVSGAAAV 286
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 156/337 (46%), Gaps = 57/337 (16%)
Query: 34 NPSRSSSVTPIHCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETL 93
NP R+ + L+E+ R+ S+KN +KIT+ MK+VA+ ++ +A++A ++ + E
Sbjct: 28 NPVRT------YATLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE-- 79
Query: 94 VEVLYNINEQLQNEDIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELK 153
E L+ N + +N D++ T D+GLCG ++ + K + +
Sbjct: 80 AEQLFYKNAETKNLDVEA---TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP 136
Query: 154 TLGLDYTIISVGKKGNAYFLRRPYIPVDRFLE--GGSLPTAKEAQTIADDVFSLFVSEEV 211
+ I+++G K LR + + G PT +E+ IAD + S+ +
Sbjct: 137 ----NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTY 192
Query: 212 DKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVE 271
K+ + Y +DP V+ + + +E F T E
Sbjct: 193 PKISIFY--------NDP----------------VSSLSFEPSEKPIFNAKTIE------ 222
Query: 272 RDVVRTETASFSPILQFEQDP-VQILDALLPLYLNSQILRALQESLASELASRMSAMSNA 330
++ SF +FE D + L L +Q+L A+ + A+E+++R +AM NA
Sbjct: 223 ------QSPSFG---KFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNA 273
Query: 331 TDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 367
+ NA ++ SI+YNR RQA IT E+++I+ GA +L
Sbjct: 274 SKNAGDMINRYSILYNRTRQAVITNELVDIITGASSL 310
>pdb|2F43|G Chain G, Rat Liver F1-atpase
Length = 273
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 151/325 (46%), Gaps = 60/325 (18%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+++ R+ S+KN QKIT++MK+VAAAK RA+ + R + T LY E E
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYG-TGSLALYEKAEIKGPE 61
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D LI + DRGLCG ++++ K+ + +A L G + I+ +G+K
Sbjct: 62 DKKKHLI----------IGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEK 111
Query: 168 GNAYFLRRPYIPVDRFL-----EGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFV 222
+ R D+FL G PT +A IA ++ L E D+ +++ +F
Sbjct: 112 IKSILYR---THSDQFLVSFKDVGRKPPTFGDASVIALEL--LNSGYEFDEGSIIFNQFK 166
Query: 223 SLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASF 282
S++ S + E E F +T VV E S
Sbjct: 167 SVI------------SYKTE------------EKPIFSFST----------VVAAENMSI 192
Query: 283 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342
++ +L L + I +L+ES SE ++RM+AM NA+ NA ++ L+
Sbjct: 193 -----YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLT 247
Query: 343 IVYNRQRQAKITGEILEIVAGADAL 367
+ +NR RQA IT E++EI++GA AL
Sbjct: 248 LTFNRTRQAVITKELIEIISGAAAL 272
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase
Length = 270
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 60/324 (18%)
Query: 49 RELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNED 108
R++ R+ S+KN QKIT++MK+VAAAK RA+ + R + T LY E ED
Sbjct: 1 RDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYG-TGSLALYEKAEIKGPED 59
Query: 109 IDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKG 168
LI + DRGLCG ++++ K+ + +A L G + I+ +G+K
Sbjct: 60 KKKHLI----------IGVSSDRGLCGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKI 109
Query: 169 NAYFLRRPYIPVDRFL-----EGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVS 223
+ R D+FL G PT +A IA ++ L E D+ +++ +F S
Sbjct: 110 KSILYR---THSDQFLVSFKDVGRKPPTFGDASVIALEL--LNSGYEFDEGSIIFNQFKS 164
Query: 224 LVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS 283
++ S + E E F +T VV E S
Sbjct: 165 VI------------SYKTE------------EKPIFSFST----------VVAAENMSI- 189
Query: 284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSI 343
++ +L L + I +L+ES SE ++RM+AM NA+ NA ++ L++
Sbjct: 190 ----YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTL 245
Query: 344 VYNRQRQAKITGEILEIVAGADAL 367
+NR RQA IT E++EI++GA AL
Sbjct: 246 TFNRTRQAVITKELIEIISGAAAL 269
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 51/323 (15%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+E+ R+ S+KN +KIT+ MK+VA+ ++ +A++A ++ + E E L+ N + +N
Sbjct: 3 LKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE--AEQLFYKNAETKNL 60
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D++ T D+GLCG ++ + K + + + I+++G K
Sbjct: 61 DVEA---TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP----NADIVTIGDK 113
Query: 168 GNAYFLRRPYIPVDRFLE--GGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLV 225
LR + + G PT +E+ IAD + S+ + K+ + Y
Sbjct: 114 IKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY------- 166
Query: 226 KSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI 285
+DP V+ + + +E F T E ++ SF
Sbjct: 167 -NDP----------------VSSLSFEPSEKPIFNAKTIE------------QSPSFG-- 195
Query: 286 LQFEQDP-VQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIV 344
+FE D + L L +Q+L A+ + A+E+++R +AM NA+ NA ++ SI+
Sbjct: 196 -KFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSIL 254
Query: 345 YNRQRQAKITGEILEIVAGADAL 367
YNR RQA IT E+++I+ GA +L
Sbjct: 255 YNRTRQAVITNELVDIITGASSL 277
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|G Chain G, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 298
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 60/325 (18%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+++ R+ S+KN QKIT++MK+VAAAK RA+ + R + + LY + E
Sbjct: 28 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSL-ALYEKADIKTPE 86
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D LI + DRGLCG ++++ K+ ++ A L G + II VG K
Sbjct: 87 DKKKHLI----------IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 136
Query: 168 GNAYFLRRPYIPVDRFL-----EGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFV 222
+ L R + D+FL G PT +A IA ++ L E D+ +++ +F
Sbjct: 137 IRS-ILHRTH--SDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFR 191
Query: 223 SLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASF 282
S+ + E F L T + E+ S
Sbjct: 192 SV------------------------ISYKTEEKPIFSLDT----------ISSAESMSI 217
Query: 283 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342
++ +L L + I +L+ES SE ++RM+AM NA+ NA E+ L+
Sbjct: 218 -----YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLT 272
Query: 343 IVYNRQRQAKITGEILEIVAGADAL 367
+ +NR RQA IT E++EI++GA AL
Sbjct: 273 LTFNRTRQAVITKELIEIISGAAAL 297
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|G Chain G, Bovine Mitochondrial F1-Atpase
pdb|1NBM|G Chain G, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|G Chain G, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|G Chain G, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|G Chain G, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|G Chain G, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|G Chain G, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|G Chain G, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1W0J|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|G Chain G, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|G Chain G, Azide Inhibited Bovine F1-Atpase
pdb|2JIZ|G Chain G, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|N Chain N, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|G Chain G, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|N Chain N, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|G Chain G, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|N Chain N, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|G Chain G, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|G Chain G, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|P Chain P, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2XND|G Chain G, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 272
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 60/325 (18%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+++ R+ S+KN QKIT++MK+VAAAK RA+ + R + + LY + E
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSL-ALYEKADIKTPE 61
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D LI + DRGLCG ++++ K+ ++ A L G + II VG K
Sbjct: 62 DKKKHLI----------IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 111
Query: 168 GNAYFLRRPYIPVDRFL-----EGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFV 222
+ L R + D+FL G PT +A IA ++ L E D+ +++ +F
Sbjct: 112 IRS-ILHRTH--SDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFR 166
Query: 223 SLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASF 282
S+ + E F L T + E+ S
Sbjct: 167 SV------------------------ISYKTEEKPIFSLDT----------ISSAESMSI 192
Query: 283 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342
++ +L L + I +L+ES SE ++RM+AM NA+ NA E+ L+
Sbjct: 193 -----YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLT 247
Query: 343 IVYNRQRQAKITGEILEIVAGADAL 367
+ +NR RQA IT E++EI++GA AL
Sbjct: 248 LTFNRTRQAVITKELIEIISGAAAL 272
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|4ASU|G Chain G, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 273
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 152/325 (46%), Gaps = 60/325 (18%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+++ R+ S+KN QKIT++MK+VAAAK RA+ + R + + LY + E
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSL-ALYEKADIKTPE 61
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D LI + DRGLCG ++++ K+ ++ A L G + II VG K
Sbjct: 62 DKKKHLI----------IGVSSDRGLCGAIHSSVAKQMKSEAANLAAAGKEVKIIGVGDK 111
Query: 168 GNAYFLRRPYIPVDRFL-----EGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFV 222
+ L R + D+FL G PT +A IA ++ L E D+ +++ +F
Sbjct: 112 IRS-ILHRTH--SDQFLVTFKEVGRRPPTFGDASVIALEL--LNSGYEFDEGSIIFNRFR 166
Query: 223 SLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASF 282
S++ S + E E F L T + E+ S
Sbjct: 167 SVI------------SYKTE------------EKPIFSLDT----------ISSAESMSI 192
Query: 283 SPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342
++ +L L + I +L+ES SE ++RM+AM NA+ NA E+ L+
Sbjct: 193 -----YDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLT 247
Query: 343 IVYNRQRQAKITGEILEIVAGADAL 367
+ +NR RQA IT E++EI++GA AL
Sbjct: 248 LTFNRTRQAVITKELIEIISGAAAL 272
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 51/323 (15%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNE 107
L+E+ R+ S+KN +KIT+ MK+VA+ ++ +A++A ++ + E E L+ N + +N
Sbjct: 3 LKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEKAKISAKKMDE--AEQLFYKNAETKNL 60
Query: 108 DIDVPLIXXXXXXXXXXXXXTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKK 167
D++ T D+GLCG ++ + K + + + I+++G K
Sbjct: 61 DVEA---TETGAPKELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP----NADIVTIGDK 113
Query: 168 GNAYFLRRPYIPVDRFLE--GGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLV 225
LR + + G PT +E+ IAD + S+ + K+ + Y
Sbjct: 114 IKMQLLRTHPNNIKLSINGIGKDAPTFQESALIADKLLSVMKAGTYPKISIFY------- 166
Query: 226 KSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI 285
+DP V+ + + +E F T E ++ SF
Sbjct: 167 -NDP----------------VSSLSFEPSEKPIFNAKTIE------------QSPSFG-- 195
Query: 286 LQFEQDP-VQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIV 344
+FE D + L L +Q+L A+ + A+E+++R +AM NA+ NA ++ SI+
Sbjct: 196 -KFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINRYSIL 254
Query: 345 YNRQRQAKITGEILEIVAGADAL 367
YNR RQA IT E+++ + GA +L
Sbjct: 255 YNRTRQAVITNELVDTITGASSL 277
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 42/268 (15%)
Query: 63 KITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIXXXXXXXX 122
KIT+AM++VAA+K+R++Q+ + RP++ET+ +V+ ++ N + P +
Sbjct: 1 KITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLAH--GNLEYKHPYLEDRDVKRV 58
Query: 123 XXXXXTGDRGLCGGFNNNIIKKAEARIAELKTL---GLDYTIISVGKKGNAYFLRRPYIP 179
+ DRGLCGG N N+ KK +AE+KT G+ + +G KG ++F
Sbjct: 59 GYLVVSTDRGLCGGLNINLFKKL---LAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNV 115
Query: 180 VDRFLEGGSLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSP 239
V + G P+ E + + +DK+ ++ KF++ + P I LLPL
Sbjct: 116 VAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLP- 174
Query: 240 RGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQFEQDPVQILDAL 299
A++D+ + + + +E DP +LD L
Sbjct: 175 -------------ASDDDDLKHKSWD--------------------YLYEPDPKALLDTL 201
Query: 300 LPLYLNSQILRALQESLASELASRMSAM 327
L Y+ SQ+ + + E+LASE A+RM AM
Sbjct: 202 LRRYVESQVYQGVVENLASEQAARMVAM 229
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 100
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 304 LNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363
L I ++ + SE ++RM+AM NA+ NA E+ L++ +NR RQA IT E++EI++G
Sbjct: 31 LCGAIHSSVAKQTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISG 90
Query: 364 ADAL 367
A AL
Sbjct: 91 AAAL 94
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 48 LRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSE 91
L+++ R+ S+KN QKIT++MK+VAAAK+ A + V + SE
Sbjct: 3 LKDITRRLKSIKNIQKITKSMKMVAAAKLCGAIHSSVAKQTTSE 46
>pdb|3SMP|A Chain A, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
pdb|3SMP|B Chain B, Monoclinic Crystal Structure Of Human Pantothenate Kinase
1 Alpha
Length = 386
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 151 ELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLE------------------GGSLPTA 192
ELK L + G+KGN +F+R P + RF++ GG+
Sbjct: 83 ELKNLTM------CGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFE 136
Query: 193 KEAQTIADDVFSLFVSEEVDKV--ELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVC 250
++ + IAD L +E+D + LLY V + P +P E+C C
Sbjct: 137 EDFRMIAD--LQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNP--ELCQKKPYC 192
Query: 251 VD 252
+D
Sbjct: 193 LD 194
>pdb|2I7N|A Chain A, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
pdb|2I7N|B Chain B, Crystal Structure Of Human Pank1 Alpha: The Catalytic Core
Domain In Complex With Accoa
Length = 360
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 30/122 (24%)
Query: 151 ELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLE------------------GGSLPTA 192
ELK L + G+KGN +F+R P + RF++ GG+
Sbjct: 61 ELKNLTM------CGRKGNLHFIRFPSCAMHRFIQMGSEKNFSSLHTTLCATGGGAFKFE 114
Query: 193 KEAQTIADDVFSLFVSEEVDKV--ELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVC 250
++ + IAD L +E+D + LLY V + P +P E+C C
Sbjct: 115 EDFRMIAD--LQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNP--ELCQKKPYC 170
Query: 251 VD 252
+D
Sbjct: 171 LD 172
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 269 TVERDVVRTETASFSPILQFEQDPVQILDALL----PLY 303
T+E+ + RT+ P+L E P ++L+AL PLY
Sbjct: 106 TIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLY 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,357,631
Number of Sequences: 62578
Number of extensions: 343688
Number of successful extensions: 836
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 27
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)