Query 017613
Match_columns 368
No_of_seqs 158 out of 1044
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 2E-84 4.4E-89 618.2 32.9 286 49-368 1-287 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 4.5E-81 9.7E-86 603.0 36.6 288 45-368 1-289 (289)
3 PRK14111 F0F1 ATP synthase sub 100.0 2.2E-80 4.7E-85 598.6 36.4 288 45-368 1-289 (290)
4 PRK13426 F0F1 ATP synthase sub 100.0 1.3E-79 2.9E-84 593.4 36.4 289 45-366 1-290 (291)
5 PRK13423 F0F1 ATP synthase sub 100.0 2.3E-79 4.9E-84 591.0 36.5 287 45-368 1-287 (288)
6 PRK13424 F0F1 ATP synthase sub 100.0 4E-79 8.6E-84 590.2 36.5 289 45-368 1-290 (291)
7 PRK13425 F0F1 ATP synthase sub 100.0 3.5E-79 7.7E-84 590.3 36.1 286 45-368 1-290 (291)
8 PRK13422 F0F1 ATP synthase sub 100.0 4.4E-79 9.5E-84 591.5 36.3 295 45-367 1-298 (298)
9 PF00231 ATP-synt: ATP synthas 100.0 1.8E-79 3.9E-84 592.5 28.1 289 46-367 1-290 (290)
10 PRK14110 F0F1 ATP synthase sub 100.0 4.7E-78 1E-82 582.6 36.1 286 47-368 5-291 (291)
11 TIGR01146 ATPsyn_F1gamma ATP s 100.0 1.1E-77 2.4E-82 579.2 36.4 287 45-367 1-287 (287)
12 PRK05621 F0F1 ATP synthase sub 100.0 2.5E-77 5.3E-82 576.1 36.3 284 45-367 1-284 (284)
13 TIGR03323 alt_F1F0_F1_gam alte 100.0 4.5E-75 9.7E-80 560.2 33.4 280 51-367 1-285 (285)
14 KOG1531 F0F1-type ATP synthase 100.0 1.1E-70 2.4E-75 509.8 25.0 290 30-368 8-304 (304)
15 PF00700 Flagellin_C: Bacteria 75.2 17 0.00037 28.2 7.3 51 313-363 11-61 (86)
16 KOG3287 Membrane trafficking p 48.7 38 0.00082 31.8 5.3 42 46-89 153-194 (236)
17 PF08967 DUF1884: Domain of un 46.4 45 0.00098 26.5 4.6 36 139-174 8-43 (85)
18 PF01396 zf-C4_Topoisom: Topoi 34.2 16 0.00034 24.6 0.3 15 1-15 22-36 (39)
19 PRK05752 uroporphyrinogen-III 33.3 72 0.0016 29.9 4.8 48 121-177 55-102 (255)
20 PF10960 DUF2762: Protein of u 31.9 2.4E+02 0.0052 21.7 9.1 66 293-360 3-68 (71)
21 PF03598 CdhC: CO dehydrogenas 31.0 23 0.00051 36.0 1.1 24 124-147 200-224 (411)
22 PRK04456 acetyl-CoA decarbonyl 29.2 29 0.00064 35.7 1.5 23 124-146 202-225 (463)
23 TIGR00316 cdhC CO dehydrogenas 27.6 33 0.00071 35.3 1.5 23 124-146 199-222 (458)
24 COG1587 HemD Uroporphyrinogen- 27.4 38 0.00083 31.8 1.9 48 122-177 51-98 (248)
25 smart00216 VWD von Willebrand 27.4 21 0.00046 30.8 0.1 12 130-141 142-153 (162)
26 KOG3230 Vacuolar assembly/sort 27.1 2.3E+02 0.0051 26.2 6.7 57 44-100 78-145 (224)
27 PRK09189 uroporphyrinogen-III 26.5 1.1E+02 0.0023 28.4 4.6 46 123-178 50-95 (240)
28 PF02698 DUF218: DUF218 domain 26.2 3.3E+02 0.0071 23.0 7.4 93 123-224 4-111 (155)
29 PF14156 AbbA_antirepres: Anti 26.0 2.8E+02 0.0062 20.7 6.4 37 315-351 25-63 (63)
30 COG1692 Calcineurin-like phosp 25.7 29 0.00063 33.2 0.7 17 128-144 194-210 (266)
31 PF11629 Mst1_SARAH: C termina 25.0 1.2E+02 0.0027 21.7 3.5 32 317-351 10-41 (49)
32 PF10498 IFT57: Intra-flagella 25.0 3.6E+02 0.0078 27.2 8.3 55 301-362 261-315 (359)
33 PF02870 Methyltransf_1N: 6-O- 24.7 36 0.00077 25.8 0.9 12 124-135 14-25 (77)
34 PF10138 vWA-TerF-like: vWA fo 24.3 4E+02 0.0087 24.7 7.9 71 87-176 83-153 (200)
35 PF00094 VWD: von Willebrand f 24.0 30 0.00065 29.3 0.4 12 130-141 138-149 (159)
36 PRK08883 ribulose-phosphate 3- 23.6 1.9E+02 0.004 27.0 5.7 54 123-176 131-188 (220)
37 COG1344 FlgL Flagellin and rel 23.6 2E+02 0.0043 28.7 6.3 48 314-361 285-332 (360)
38 PRK11199 tyrA bifunctional cho 23.4 4.2E+02 0.0092 26.5 8.6 33 44-76 1-38 (374)
39 PRK08073 flgL flagellar hook-a 23.2 2.1E+02 0.0045 27.6 6.1 50 313-362 214-263 (287)
40 PRK12803 flagellin; Provisiona 23.0 2.8E+02 0.0062 27.6 7.1 50 313-362 259-308 (335)
41 COG3377 Uncharacterized conser 21.7 1.3E+02 0.0028 24.4 3.5 42 123-175 25-68 (95)
42 PF03847 TFIID_20kDa: Transcri 21.4 1.5E+02 0.0033 22.5 3.8 31 283-313 13-43 (68)
43 PF07341 DUF1473: Protein of u 21.0 5E+02 0.011 22.8 7.2 52 49-102 37-88 (163)
44 PRK08745 ribulose-phosphate 3- 20.5 7E+02 0.015 23.2 9.7 54 123-176 135-192 (223)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=2e-84 Score=618.15 Aligned_cols=286 Identities=48% Similarity=0.718 Sum_probs=261.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCccccc-CCCceEEEEEE
Q 017613 49 RELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKV-RPVKKVALVVV 127 (368)
Q Consensus 49 keIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~-~~~k~~~~Ivi 127 (368)
++||+||+||++|+||||||||||+|||||+|+++.+.+||++++++++.++... ..+..||++.. ++.+++++|||
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi 78 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI 78 (287)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence 5899999999999999999999999999999999999999999999999999874 12356787766 77899999999
Q ss_pred eCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHHhhh
Q 017613 128 TGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFV 207 (368)
Q Consensus 128 tSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~~~~ 207 (368)
|||||||||||+||+|.+...+++++..+.++.+++||+||.++|+++|++++..+.++++.|+|+.+..|++.+++.|.
T Consensus 79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~ 158 (287)
T COG0224 79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL 158 (287)
T ss_pred ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988888889999999999999999888778788888889999999999999999999
Q ss_pred cCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCCccc
Q 017613 208 SEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPILQ 287 (368)
Q Consensus 208 ~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (368)
+|++|+|+|+||+|+|+++|+|+.++|||++..+. .... . .+. ..+|+
T Consensus 159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~------------~~~~----------------~--~~~--~~~~e 206 (287)
T COG0224 159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED------------EAEE----------------E--EPG--LWDYE 206 (287)
T ss_pred CCCCceEEEEecccccceeeeeeeEEEecCCcccc------------hhhh----------------c--ccc--cccee
Confidence 99999999999999999999999999999975210 0000 0 000 13789
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Q 017613 288 FEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGADAL 367 (368)
Q Consensus 288 fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGaeAl 367 (368)
|||+++++|+.|+|+|+.++||+|++||.||||+|||+||++|||||++||++|++.|||+||++||+||+|||+||+||
T Consensus 207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL 286 (287)
T COG0224 207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286 (287)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 017613 368 V 368 (368)
Q Consensus 368 ~ 368 (368)
.
T Consensus 287 ~ 287 (287)
T COG0224 287 E 287 (287)
T ss_pred C
Confidence 4
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4.5e-81 Score=602.99 Aligned_cols=288 Identities=38% Similarity=0.551 Sum_probs=256.5
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCC-CceEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRP-VKKVA 123 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~-~k~~~ 123 (368)
|++|++||+||+||++|+|||+||||||+||+||||+++++.+||++.+++++.+++.... ...+|++..++ .++++
T Consensus 1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~--~~~~p~~~~~~~~~~~~ 78 (289)
T PRK13427 1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEG--VVHSPYLRRPEKIRTVA 78 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcC--cccCCCcccCCccCceE
Confidence 5899999999999999999999999999999999999999999999999999999986421 12467665554 35678
Q ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHH
Q 017613 124 LVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVF 203 (368)
Q Consensus 124 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~ 203 (368)
+||||||||||||||++|+|.+.+.++++...+.++.+++||+||.++|++++..+...+.++++.|+++.+..|++.++
T Consensus 79 ~ivitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 158 (289)
T PRK13427 79 LLIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFM 158 (289)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999877656677889999999999999877666666667778899999999999999
Q ss_pred HhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCC
Q 017613 204 SLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS 283 (368)
Q Consensus 204 ~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (368)
+.|.++++|+|+|+||+|+|+++|+|.+++|||++.... .+ .... .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~-------------~~--------------------~~~~-~ 204 (289)
T PRK13427 159 ERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTA-------------AA--------------------EGSV-Q 204 (289)
T ss_pred HHHHcCCCCEEEEEecccccceecceeeEEeeCCCcccc-------------cc--------------------cccC-C
Confidence 999999999999999999999999999999999963110 00 0000 1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613 284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363 (368)
Q Consensus 284 ~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 363 (368)
+.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||||
T Consensus 205 ~~~~~ep~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~G 284 (289)
T PRK13427 205 DDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGG 284 (289)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 017613 364 ADALV 368 (368)
Q Consensus 364 aeAl~ 368 (368)
|+||+
T Consensus 285 aeal~ 289 (289)
T PRK13427 285 ADALN 289 (289)
T ss_pred HhhcC
Confidence 99986
No 3
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.2e-80 Score=598.63 Aligned_cols=288 Identities=38% Similarity=0.602 Sum_probs=256.4
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCC-CceEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRP-VKKVA 123 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~-~k~~~ 123 (368)
|++|++||+||+||++|+|||+||||||++|+|||++++++.+||++++++++.+++......+..+|++..++ .++++
T Consensus 1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 80 (290)
T PRK14111 1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA 80 (290)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence 58999999999999999999999999999999999999999999999999999999864321112367665555 47788
Q ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHH
Q 017613 124 LVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVF 203 (368)
Q Consensus 124 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~ 203 (368)
|||||||||||||||++|+|.+.+.++++...++++.+++||+||.++|+++|..+...+.+.++.|+++++..|++.++
T Consensus 81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~ 160 (290)
T PRK14111 81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAI 160 (290)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999877655667889999999999999888666666666778899999999999999
Q ss_pred HhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCC
Q 017613 204 SLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS 283 (368)
Q Consensus 204 ~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (368)
+.|.++++|+|+|+||+|+|+++|+|.+++|||++... .+ . . ..
T Consensus 161 ~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~--------------~~--------------------~-~-~~ 204 (290)
T PRK14111 161 NGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPE--------------IS--------------------T-T-TV 204 (290)
T ss_pred HHHHcCCCCEEEEEecccccceeeeeeEEEecCCCccc--------------cc--------------------c-c-cc
Confidence 99999999999999999999999999999999996411 00 0 0 01
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613 284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363 (368)
Q Consensus 284 ~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 363 (368)
++|+|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||||
T Consensus 205 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsG 284 (290)
T PRK14111 205 VDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASG 284 (290)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 017613 364 ADALV 368 (368)
Q Consensus 364 aeAl~ 368 (368)
|+||.
T Consensus 285 aeal~ 289 (290)
T PRK14111 285 AAALG 289 (290)
T ss_pred HHHhc
Confidence 99984
No 4
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.3e-79 Score=593.44 Aligned_cols=289 Identities=38% Similarity=0.531 Sum_probs=254.4
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVAL 124 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~ 124 (368)
|++|++||+||+||++|+|||+||||||++|+||+++++++.+||++.+++++.+++...+ ...+|++..++.+++++
T Consensus 1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13426 1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADL--DVESPFTVERPVKRVAI 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccC--CCCCcccccCCcceEEE
Confidence 5899999999999999999999999999999999999999999999999999999986431 22467665555567789
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCC-CceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLG-LDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVF 203 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~-~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~ 203 (368)
||||||||||||||++|+|.+.+++++....+ .++.+++||+||.++|.++|..++..+...++.|+++++..|++.++
T Consensus 79 IvitSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~ 158 (291)
T PRK13426 79 VVFSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLM 158 (291)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998754433 46789999999999999887766666666778899999999999999
Q ss_pred HhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCC
Q 017613 204 SLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS 283 (368)
Q Consensus 204 ~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (368)
+.|..+++|+|+|+||+|+|+++|+|++++|||++.... + .. +......
T Consensus 159 ~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~---------~---~~-------------------~~~~~~~ 207 (291)
T PRK13426 159 ELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQE---------K---NA-------------------EHAGGVA 207 (291)
T ss_pred HHHhcCCCCEEEEEecccccccccceeEEEecCCCcccc---------c---cc-------------------ccccCCC
Confidence 999999999999999999999999999999999964110 0 00 0000011
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613 284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363 (368)
Q Consensus 284 ~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 363 (368)
++|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||||
T Consensus 208 ~~~~~Ep~~e~il~~L~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsG 287 (291)
T PRK13426 208 NDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287 (291)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 017613 364 ADA 366 (368)
Q Consensus 364 aeA 366 (368)
|+|
T Consensus 288 aea 290 (291)
T PRK13426 288 SMA 290 (291)
T ss_pred hhc
Confidence 998
No 5
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.3e-79 Score=591.02 Aligned_cols=287 Identities=41% Similarity=0.596 Sum_probs=254.8
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVAL 124 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~ 124 (368)
|++|++||+||+||++|+|||+||||||++|+||+|+++++.+||++++++++.+++...+ ...+|++..++.++++|
T Consensus 1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~--~~~~p~~~~~~~~~~~~ 78 (288)
T PRK13423 1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAG--EDAHPLLVPREVKKALL 78 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCcccccCCCceEEE
Confidence 5899999999999999999999999999999999999999999999999999999986432 12367655555567789
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFS 204 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~ 204 (368)
|||||||||||+||++|+|.+.+.++++...+.++.+++||+||.++|++++......+.+..+.|+++.+..|++.+++
T Consensus 79 IvitSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (288)
T PRK13423 79 VVVTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIE 158 (288)
T ss_pred EEEeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998765556677899999999999998776555556666678899999999999999
Q ss_pred hhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCC
Q 017613 205 LFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSP 284 (368)
Q Consensus 205 ~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (368)
.|.++++|+|+|+||+|+|+++|+|.+++|||++... .. ... ..+
T Consensus 159 ~~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~--------------~~--------------------~~~-~~~ 203 (288)
T PRK13423 159 GYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPE--------------AA--------------------DDE-YLP 203 (288)
T ss_pred HHhcCCCCEEEEEecccccccccceeEEEecCCCccc--------------cc--------------------ccc-ccc
Confidence 9999999999999999999999999999999996311 00 000 012
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 017613 285 ILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 364 (368)
Q Consensus 285 ~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGa 364 (368)
.|.|||+++++|++|+|.|+++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||
T Consensus 204 ~~~~ep~~~~vl~~l~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGa 283 (288)
T PRK13423 204 EYIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGA 283 (288)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 017613 365 DALV 368 (368)
Q Consensus 365 eAl~ 368 (368)
+||.
T Consensus 284 eal~ 287 (288)
T PRK13423 284 EALK 287 (288)
T ss_pred HHhc
Confidence 9974
No 6
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4e-79 Score=590.24 Aligned_cols=289 Identities=34% Similarity=0.554 Sum_probs=255.8
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCC-CceEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRP-VKKVA 123 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~-~k~~~ 123 (368)
|++|++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13424 1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRAD--SSAHPLLEVREEIKTCG 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCcccccccccCcEE
Confidence 5899999999999999999999999999999999999999999999999999999986432 12367655554 35678
Q ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHH
Q 017613 124 LVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVF 203 (368)
Q Consensus 124 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~ 203 (368)
|||||||||||||||++|+|.+.++++++...++++.|++||+||.++|.++|......+.++.+.|+|+.+..|++.++
T Consensus 79 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (291)
T PRK13424 79 IVLITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQMTSFDFQLANSIGLEVI 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999876555667889999999999999887666666667778899999999999999
Q ss_pred HhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCC
Q 017613 204 SLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFS 283 (368)
Q Consensus 204 ~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (368)
+.|..+++|+|+|+||+|+|+++|+|.+++|||++..+. ... .+.. .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~------------~~~------------------~~~~---~ 205 (291)
T PRK13424 159 DGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEA------------EEE------------------EAGA---S 205 (291)
T ss_pred HHHHcCCCCEEEEEeccccccccCceEEEEecCCCcccc------------ccc------------------cccc---c
Confidence 999999999999999999999999999999999964110 000 0000 1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613 284 PILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363 (368)
Q Consensus 284 ~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 363 (368)
..|+|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus 206 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvsG 285 (291)
T PRK13424 206 SEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGG 285 (291)
T ss_pred cCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 017613 364 ADALV 368 (368)
Q Consensus 364 aeAl~ 368 (368)
|+||.
T Consensus 286 a~al~ 290 (291)
T PRK13424 286 AEALK 290 (291)
T ss_pred HHHhc
Confidence 99974
No 7
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=3.5e-79 Score=590.30 Aligned_cols=286 Identities=41% Similarity=0.586 Sum_probs=253.8
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCC-CceEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRP-VKKVA 123 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~-~k~~~ 123 (368)
|++|++||+||+||++|+|||+||||||++|+||+|+++++.+||++.+.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13425 1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVD--TSLNPLLSPRSEVNKVL 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCccccccccCccEE
Confidence 5899999999999999999999999999999999999999999999999999999976431 12367655553 46778
Q ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhh---CCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHH
Q 017613 124 LVVVTGDRGLCGGFNNNIIKKAEARIAELKT---LGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIAD 200 (368)
Q Consensus 124 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~---~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~ 200 (368)
|||||||||||||||++|+|.+.+.++++.. .+.++.+++||+||.++|+++|......+.+..+.|+++.+..|++
T Consensus 79 ~ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~~~~~~~~a~~i~~ 158 (291)
T PRK13425 79 VILITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAE 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876432 3456789999999999999887666777777778889999999999
Q ss_pred HHHHhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhcccccccc
Q 017613 201 DVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETA 280 (368)
Q Consensus 201 ~l~~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (368)
.+++.|.++++|+|+|+||+|+|.++|+|.+++|||+++... .+ ..
T Consensus 159 ~~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~--------------------~~- 204 (291)
T PRK13425 159 TASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKP-------------GA--------------------EG- 204 (291)
T ss_pred HHHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCcccc-------------cc--------------------cc-
Confidence 999999999999999999999999999999999999964110 00 00
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017613 281 SFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEI 360 (368)
Q Consensus 281 ~~~~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EI 360 (368)
..+|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+||
T Consensus 205 --~~~~~~eP~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EI 282 (291)
T PRK13425 205 --GSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEI 282 (291)
T ss_pred --CCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccC
Q 017613 361 VAGADALV 368 (368)
Q Consensus 361 VsGaeAl~ 368 (368)
|+||+||.
T Consensus 283 v~Ga~al~ 290 (291)
T PRK13425 283 VAGADALQ 290 (291)
T ss_pred HHHHHHhc
Confidence 99999973
No 8
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4.4e-79 Score=591.48 Aligned_cols=295 Identities=33% Similarity=0.461 Sum_probs=250.7
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVAL 124 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~ 124 (368)
|+++++||+||+||++|+|||+||||||+||+||||+++.+.+||++.+.+++.+++... .+..+|++..++.+++++
T Consensus 1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 78 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAAS--IDYPNPYLFDRDVKRVGY 78 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcC--CccCCcccccCCCceEEE
Confidence 589999999999999999999999999999999999999999999999999999987531 122366665555667789
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhh-CCCcceee--cccCCCCCCHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLR-RPYIPVDR--FLEGGSLPTAKEAQTIADD 201 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~-~~~~~v~~--~~~~~~~p~~~~a~~i~~~ 201 (368)
||||||||||||||++|+|.+.+.++++...+.++.+++||+||.++|++ ++...+.. +...++.|+++++..|++.
T Consensus 79 IvitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 158 (298)
T PRK13422 79 IVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKV 158 (298)
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999998776566678899999999999985 44444444 2333468899999999999
Q ss_pred HHHhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccC
Q 017613 202 VFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETAS 281 (368)
Q Consensus 202 l~~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (368)
+++.|.++++|+|+|+||+|+|+++|+|.+++|||++.... ....+ .. .+....
T Consensus 159 ~~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~~----------~~~~~------------~~----~~~~~~ 212 (298)
T PRK13422 159 MLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIFS----------AEEIK------------AN----KEKATK 212 (298)
T ss_pred HHHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCcccc----------hhhhc------------cc----cccccc
Confidence 99999999999999999999999999999999999953100 00000 00 000000
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017613 282 FSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIV 361 (368)
Q Consensus 282 ~~~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIV 361 (368)
....|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||
T Consensus 213 ~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIv 292 (298)
T PRK13422 213 GHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEIC 292 (298)
T ss_pred CCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01137899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q 017613 362 AGADAL 367 (368)
Q Consensus 362 sGaeAl 367 (368)
|||+|+
T Consensus 293 sGaeA~ 298 (298)
T PRK13422 293 SGAAAV 298 (298)
T ss_pred hhhhcC
Confidence 999985
No 9
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=1.8e-79 Score=592.51 Aligned_cols=289 Identities=48% Similarity=0.695 Sum_probs=247.4
Q ss_pred ccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccC-CCceEEE
Q 017613 46 CGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVR-PVKKVAL 124 (368)
Q Consensus 46 a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~-~~k~~~~ 124 (368)
|+|++||+||+||++|+|||+||||||++|+||+++++.+.+||++.+.+++.+++.... +..+|++..+ +.++++|
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSIS--DYQHPLLKKREEVKKVLL 78 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT--TT--SSGS-----SCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--cccCcccccccccceEEE
Confidence 689999999999999999999999999999999999999999999999999999987642 3467887776 6789999
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFS 204 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~ 204 (368)
||||||||||||||++|+|.+.+.+++....|+++.+|+||+||.++|+++|..+...+.+.++.|+++.+..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (290)
T PF00231_consen 79 IVITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGISSDPTFEEASEIAEKLID 158 (290)
T ss_dssp EEE--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBTSS--HHHHHHHHHHHHH
T ss_pred EEEecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeecccchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999998776666788999999999999999877666666677789999999999999999
Q ss_pred hhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCC
Q 017613 205 LFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSP 284 (368)
Q Consensus 205 ~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (368)
.|.++++|+|+|+||+|+|.++|+|.+++|||+.... .... .. .+ ....
T Consensus 159 ~~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~------------~~~~---~~--------------~~--~~~~ 207 (290)
T PF00231_consen 159 LYESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDI------------EQSS---EE--------------KW--PKKS 207 (290)
T ss_dssp HCCCCS-SEEEEEEEEECSTTEEEEEEEEESSS-----------------HHH---HH--------------TT--TTGG
T ss_pred hhhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccc------------hhhc---cc--------------cc--cCCC
Confidence 9999999999999999999999999999999984310 0000 00 00 1123
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 017613 285 ILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 364 (368)
Q Consensus 285 ~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGa 364 (368)
.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||
T Consensus 208 ~~~~ep~~~~il~~L~~~yl~~~l~~al~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGa 287 (290)
T PF00231_consen 208 PYEFEPSPEEILDDLLPQYLFAQLYGALLESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIVSGA 287 (290)
T ss_dssp GCCCSSTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017613 365 DAL 367 (368)
Q Consensus 365 eAl 367 (368)
+||
T Consensus 288 eAl 290 (290)
T PF00231_consen 288 EAL 290 (290)
T ss_dssp HT-
T ss_pred hcC
Confidence 997
No 10
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=4.7e-78 Score=582.64 Aligned_cols=286 Identities=36% Similarity=0.571 Sum_probs=251.4
Q ss_pred cHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEEEE
Q 017613 47 GLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVV 126 (368)
Q Consensus 47 ~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~Iv 126 (368)
++++||+||+||++|+|||+||||||++|+||+|+++++.+||++.+++++.+++.... ...+|++..++.+++++||
T Consensus 5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~Iv 82 (291)
T PRK14110 5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHID--RESHPLLERREEKNVDLVI 82 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CccCcccccCccceEEEEE
Confidence 68999999999999999999999999999999999999999999999999999986432 1236665555556778999
Q ss_pred EeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCC-CCCHHHHHHHHHHHHHh
Q 017613 127 VTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGS-LPTAKEAQTIADDVFSL 205 (368)
Q Consensus 127 itSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~-~p~~~~a~~i~~~l~~~ 205 (368)
||||||||||||++|+|.+.++++++...+.++.+++||+||.++|++++......+.++.+ +++|+.+..|++.+++.
T Consensus 83 itSDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~ 162 (291)
T PRK14110 83 ITADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASR 162 (291)
T ss_pred EeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876555667889999999999999877655555555554 45999999999999999
Q ss_pred hhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCCc
Q 017613 206 FVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI 285 (368)
Q Consensus 206 ~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (368)
|.++++|+|+|+||+|+|+++|+|.+++|||+++... .. .+. . ...
T Consensus 163 ~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~~-------------~~------------------~~~-~--~~~ 208 (291)
T PRK14110 163 YIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEAQ-------------EK------------------KLD-E--LSV 208 (291)
T ss_pred HHcCCCCEEEEEecccccceeeeEEEEEecCCCcccc-------------cc------------------ccC-C--CCC
Confidence 9999999999999999999999999999999963110 00 000 0 013
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 017613 286 LQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGAD 365 (368)
Q Consensus 286 ~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGae 365 (368)
|+|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+
T Consensus 209 ~~~ep~~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gae 288 (291)
T PRK14110 209 YNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAE 288 (291)
T ss_pred eEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 017613 366 ALV 368 (368)
Q Consensus 366 Al~ 368 (368)
||.
T Consensus 289 al~ 291 (291)
T PRK14110 289 AMK 291 (291)
T ss_pred hcC
Confidence 984
No 11
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=1.1e-77 Score=579.20 Aligned_cols=287 Identities=51% Similarity=0.732 Sum_probs=253.7
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVAL 124 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~ 124 (368)
|++|++||+||+||++|+|||+||||||++|+||+++++++.++|++++.+++.+++.... ...+|++..++.+++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (287)
T TIGR01146 1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLL--NYDHPLLKSREVKKVGI 78 (287)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CCCCccccccccCeEEE
Confidence 5899999999999999999999999999999999999999999999999999999986432 12356655554567789
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFS 204 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~ 204 (368)
||||||||||||||++|+|.+.+.++++...++++.+|+||+||.++|+++|..+...+.+.++.|+++.+..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 158 (287)
T TIGR01146 79 LVITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLD 158 (287)
T ss_pred EEEeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998765445567899999999999998776666666666678899999999999999
Q ss_pred hhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCC
Q 017613 205 LFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSP 284 (368)
Q Consensus 205 ~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (368)
.|.++++|+|+|+||+|+|+++|+|.+++|||++.... +. . + . .++
T Consensus 159 ~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~----------~--------~--~-~~~ 204 (287)
T TIGR01146 159 AFASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGP-------------DE----------G--------F--K-FGQ 204 (287)
T ss_pred HHHcCCCCEEEEEecccccceeeeEEEEEeeCCCcccc-------------cc----------c--------c--c-CCC
Confidence 99999999999999999999999999999999963110 00 0 0 0 011
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 017613 285 ILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 364 (368)
Q Consensus 285 ~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGa 364 (368)
.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||
T Consensus 205 ~~~~ep~~~~vl~~l~~~yl~~~ly~a~~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGa 284 (287)
T TIGR01146 205 DYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGA 284 (287)
T ss_pred CeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017613 365 DAL 367 (368)
Q Consensus 365 eAl 367 (368)
+||
T Consensus 285 eal 287 (287)
T TIGR01146 285 SAL 287 (287)
T ss_pred hcC
Confidence 996
No 12
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=2.5e-77 Score=576.07 Aligned_cols=284 Identities=48% Similarity=0.706 Sum_probs=255.6
Q ss_pred cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEE
Q 017613 45 HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVAL 124 (368)
Q Consensus 45 ~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~ 124 (368)
|++|++||+||+||++|+|||+||||||++|+||+++++.+.++|++++.+++.+++...+ .++|++..++.+++++
T Consensus 1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 77 (284)
T PRK05621 1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASE---YDHPLLVEREVKRVGY 77 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCC---CCCcccccCCCceEEE
Confidence 5899999999999999999999999999999999999999999999999999999986431 2367665555677889
Q ss_pred EEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHH
Q 017613 125 VVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFS 204 (368)
Q Consensus 125 IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~ 204 (368)
|||||||||||+||++|+|.+...+++++..++++.+++||+||.++|+++|..+...+.+.++.|+++.+..|++.+++
T Consensus 78 ivitSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 157 (284)
T PRK05621 78 IVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLD 157 (284)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998765556678899999999999998876666666666678899999999999999
Q ss_pred hhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCC
Q 017613 205 LFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSP 284 (368)
Q Consensus 205 ~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (368)
.|..+++|+|+|+||+|+|+++|+|.+++|||++.... .. . .+.
T Consensus 158 ~~~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~--------------------~---~~~ 201 (284)
T PRK05621 158 AYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEE-------------EE--------------------E---TSW 201 (284)
T ss_pred HHHcCCCCEEEEEecccccceecceEEEEeCCCCcccc-------------cc--------------------c---ccC
Confidence 99999999999999999999999999999999964110 00 0 012
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 017613 285 ILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGA 364 (368)
Q Consensus 285 ~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGa 364 (368)
.|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 202 ~~~~ep~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGa 281 (284)
T PRK05621 202 DYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGA 281 (284)
T ss_pred CeeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 017613 365 DAL 367 (368)
Q Consensus 365 eAl 367 (368)
+||
T Consensus 282 eal 284 (284)
T PRK05621 282 EAL 284 (284)
T ss_pred hcC
Confidence 996
No 13
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=4.5e-75 Score=560.22 Aligned_cols=280 Identities=25% Similarity=0.321 Sum_probs=236.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhcccCCCCCcc-cccCCCceEEEEEEeC
Q 017613 51 LRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQNEDIDVPL-IKVRPVKKVALVVVTG 129 (368)
Q Consensus 51 Ik~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~~~~~~~~p~-~~~~~~k~~~~IvitS 129 (368)
||+||+||++|+|||+||||||+||+||||+++.+.+||++.+.+++.+++...+ ....+|. ...+..+++++|||||
T Consensus 1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~IvitS 79 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIP-LAALSPSGPNQKVSGHTGAIVFGS 79 (285)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCC-CcccccccccccCCCcEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999886422 1112333 3333346678999999
Q ss_pred CCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeecccCCCCCCHHHHHHHHHHHHHhhh--
Q 017613 130 DRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRFLEGGSLPTAKEAQTIADDVFSLFV-- 207 (368)
Q Consensus 130 DrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~~~~~~~p~~~~a~~i~~~l~~~~~-- 207 (368)
|||||||||++|+|.+.+.++++. .++.+++||+||.++|+++|......+. +.++++.+..|++.+++.|.
T Consensus 80 DrGLCG~fN~~l~k~~~~~~~~~~---~~~~~~~iG~K~~~~~~~~~~~i~~~~~---~~~~~~~~~~i~~~i~~~~~~~ 153 (285)
T TIGR03323 80 DQGLVGQFNEVILTFAAEELARLP---GEATIWAVGERVASRLEDSGLTIGELFR---LPNSVGAITPLVSELLIEVEAR 153 (285)
T ss_pred CCcCchHhHHHHHHHHHHHHHhcc---CCeEEEEECHHHHHHHHHcCCCceEeec---CcCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987642 3668999999999999987654444433 34578888999999999996
Q ss_pred --cCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhhccccccchhhccccccccCCCCc
Q 017613 208 --SEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTETASFSPI 285 (368)
Q Consensus 208 --~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (368)
++++|+|+|+||+|+|+++|+|.+++|||++.... +.. . ...| .. +..
T Consensus 154 ~~~~~~d~v~iiY~~f~s~~~~~~~~~~llP~~~~~~-------------~~~----~----------~~~~-~~--~~~ 203 (285)
T TIGR03323 154 REQGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETWQ-------------RQL----A----------TQQW-PT--KCL 203 (285)
T ss_pred hhcCCCcEEEEEecccccCcccceeeEEeeCCCcccc-------------ccc----c----------cccc-cc--CCC
Confidence 99999999999999999999999999999953100 000 0 0000 00 113
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 017613 286 LQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAGAD 365 (368)
Q Consensus 286 ~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsGae 365 (368)
|.|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+||||||+
T Consensus 204 ~~~ep~~~~il~~L~~~yl~~~ly~alles~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGae 283 (285)
T TIGR03323 204 PELMGEPEETFSALIREYLFVSLFRACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFE 283 (285)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 017613 366 AL 367 (368)
Q Consensus 366 Al 367 (368)
||
T Consensus 284 al 285 (285)
T TIGR03323 284 AL 285 (285)
T ss_pred cC
Confidence 97
No 14
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-70 Score=509.83 Aligned_cols=290 Identities=44% Similarity=0.602 Sum_probs=253.2
Q ss_pred CCCCCCCCCCCcccc-----cccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhhc
Q 017613 30 ATPNNPSRSSSVTPI-----HCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQL 104 (368)
Q Consensus 30 ~~~~~~~~~~~~~~m-----~a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~~~ 104 (368)
++---|++++++.|. +|+||+|+.||+||||||||||+|||||++|+++||+.+.+.|+|.+...+++.++
T Consensus 8 ~~~~~p~~~~~~~~~~q~~~~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~~~~~~~~~~~~---- 83 (304)
T KOG1531|consen 8 ATRLLPSISASVSPAIQARGFATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNI---- 83 (304)
T ss_pred cccccchhhhhccchhhhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHhhc----
Confidence 344456777777776 79999999999999999999999999999999999999999999999999988876
Q ss_pred ccCCCCCcccccCCCceEEEEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCcceeec-
Q 017613 105 QNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYIPVDRF- 183 (368)
Q Consensus 105 ~~~~~~~p~~~~~~~k~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~~v~~~- 183 (368)
+.+.|+...++.||+++|++|||||||||+|+.|.|.++..+++.+. ++++.++.||+|++.+|.+.+.+.+.-.
T Consensus 84 ---d~~~p~~e~~~~kK~~lV~vtsDrGLCGgihssi~K~~r~~l~~~~~-~~e~~vv~iGdK~ra~l~R~~~~~i~ls~ 159 (304)
T KOG1531|consen 84 ---DIDVPLTEEGEVKKVLLVAVTSDRGLCGGIHSSIAKKARRELNDLKG-GKEVRVVIIGDKIRAILLRLHPNSILLSI 159 (304)
T ss_pred ---cCCCCccccccccceEEEEEecCCccccchhHHHHHHHHHHHHhccC-CCceEEEEEchhhhhheeecCchhhhhhH
Confidence 35678888888899999999999999999999999999999988765 7899999999999999988775555433
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHhhhcCCCcEEEEEeccccccccccceEeeeccCCCCCCccccCCccccchhhhhhhhh
Q 017613 184 LEGG-SLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPRGEICDVNGVCVDAAEDEFFRLT 262 (368)
Q Consensus 184 ~~~~-~~p~~~~a~~i~~~l~~~~~~~~~d~i~iiyn~f~s~~~q~p~~~~lLP~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (368)
-++| .+|+|.++..+++.+++.- ++||++.|+||+|+|.++++|...+|||+...+. .+ .
T Consensus 160 ~eig~~pptf~~asvia~~il~~~--~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~-----------s~-~----- 220 (304)
T KOG1531|consen 160 NEIGRAPPTFEDASVIADEILLSG--YEFDKGSIVYNKFKSVVSYETSEKPILPLETIEE-----------SE-S----- 220 (304)
T ss_pred hhcCCCCCcHHHHHHHHHHHHhhh--ccccceEEEeecchhheeeccccccccCHHHhcc-----------cc-c-----
Confidence 3455 5889999999999998764 7999999999999999999999999999875210 00 0
Q ss_pred ccccccchhhccccccccCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 017613 263 TKEGKLTVERDVVRTETASFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLS 342 (368)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~fEp~~e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~ 342 (368)
.. .|.--.++++..|+|.||..+||.|+.||.+||++|||+||+||++||.|||++|+
T Consensus 221 -------------------l~---~~d~iddev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~klt 278 (304)
T KOG1531|consen 221 -------------------LS---CYDSIDDEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLT 278 (304)
T ss_pred -------------------cc---chhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHh
Confidence 00 12223367889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcccC
Q 017613 343 IVYNRQRQAKITGEILEIVAGADALV 368 (368)
Q Consensus 343 l~yNr~RQa~IT~EI~EIVsGaeAl~ 368 (368)
+.|||.|||.||.||+|||+||+||+
T Consensus 279 l~yNRtRQA~IT~ELieIisGA~al~ 304 (304)
T KOG1531|consen 279 LTYNRTRQAVITNELIEIISGASALT 304 (304)
T ss_pred hhhhhhcccchHHHHHHHHhhhhhcC
Confidence 99999999999999999999999985
No 15
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=75.23 E-value=17 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 017613 313 QESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVAG 363 (368)
Q Consensus 313 leS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 363 (368)
+.+..++.++|+..++.+.++.+.....|+-...+.+-.-+.+++.++...
T Consensus 11 v~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~~~ 61 (86)
T PF00700_consen 11 VSSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLTQA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 347789999999999999999999999999999999999999999998654
No 16
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.75 E-value=38 Score=31.78 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccH
Q 017613 46 CGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPF 89 (368)
Q Consensus 46 a~lkeIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y 89 (368)
-++.+|..+|++|++ .|+++|.+-+.+|.++|+++......|
T Consensus 153 ~kl~di~~~i~~i~~--nl~k~~~~q~~lRa~EaRDr~L~esNf 194 (236)
T KOG3287|consen 153 VKLDDIEDSIGTIKN--NLNKMWQYQALLRAREARDRNLQESNF 194 (236)
T ss_pred ccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhccc
Confidence 378999999999996 799999999999999999987765553
No 17
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=46.42 E-value=45 Score=26.47 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhh
Q 017613 139 NNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLR 174 (368)
Q Consensus 139 ~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~ 174 (368)
..|+..+.+.+++++..|-++.++.+|...+.|++.
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~G~ef~e~~~~ 43 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLVGPEFYEFLSE 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEcHHHHHHHHH
Confidence 456667777788888889899999999999999875
No 18
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=34.16 E-value=16 Score=24.64 Aligned_cols=15 Identities=47% Similarity=0.997 Sum_probs=12.1
Q ss_pred CCCCCCCccccCCCc
Q 017613 1 MSCSNLPVCRDTSSL 15 (368)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (368)
++|||.|.|+-|..+
T Consensus 22 ~~Cs~yP~C~~~~~~ 36 (39)
T PF01396_consen 22 LGCSNYPECKYTEPL 36 (39)
T ss_pred EECCCCCCcCCeEeC
Confidence 479999999987654
No 19
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=33.33 E-value=72 Score=29.95 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=31.2
Q ss_pred eEEEEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCC
Q 017613 121 KVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPY 177 (368)
Q Consensus 121 ~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~ 177 (368)
...||||||-.|. +...+.+++.........+++||++-.+.++..|+
T Consensus 55 ~~d~iifTS~naV---------~~~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~ 102 (255)
T PRK05752 55 RYCAVIVVSKPAA---------RLGLELLDRYWPQPPQQPWFSVGAATAAILQDYGL 102 (255)
T ss_pred CCCEEEEECHHHH---------HHHHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCC
Confidence 3458999997774 33333333211111136799999999999998775
No 20
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=31.88 E-value=2.4e+02 Score=21.70 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017613 293 VQILDALLPLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEI 360 (368)
Q Consensus 293 e~il~~L~~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EI 360 (368)
++++.-++.+=+++.||-.|+=+..=++.-|-.-++.=.++..++|++++-.+|... .|-+.+.||
T Consensus 3 ~ei~k~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~--~~~~dv~ei 68 (71)
T PF10960_consen 3 EEIIKLALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIE--EIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 567788888888888888888888888887766666777888888888888887765 344444444
No 21
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=31.00 E-value=23 Score=35.99 Aligned_cols=24 Identities=42% Similarity=0.547 Sum_probs=15.2
Q ss_pred EEEEeCCC-cccccchHHHHHHHHH
Q 017613 124 LVVVTGDR-GLCGGFNNNIIKKAEA 147 (368)
Q Consensus 124 ~IvitSDr-GLCG~fN~~v~k~~~~ 147 (368)
+-|||.|| ||||++|=-=.|++-+
T Consensus 200 VCvvtPeR~~lCGaisWlDakAa~e 224 (411)
T PF03598_consen 200 VCVVTPERPGLCGAISWLDAKAAYE 224 (411)
T ss_dssp -EEEBTTB--TTSS--HHHHHHHHH
T ss_pred eEEECCCCcccccccchhhhhhhhc
Confidence 34789998 9999999776666543
No 22
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=29.24 E-value=29 Score=35.73 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=17.3
Q ss_pred EEEEeCCC-cccccchHHHHHHHH
Q 017613 124 LVVVTGDR-GLCGGFNNNIIKKAE 146 (368)
Q Consensus 124 ~IvitSDr-GLCG~fN~~v~k~~~ 146 (368)
+-|||.|| ||||++|=-=.|++.
T Consensus 202 VCvvtPeR~~lCGaisW~D~rAa~ 225 (463)
T PRK04456 202 VCVITPDRPSLCGAINWFDGRAAA 225 (463)
T ss_pred eEEECCCCcccccccchhhhhhhh
Confidence 44889998 999999966555543
No 23
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=27.56 E-value=33 Score=35.34 Aligned_cols=23 Identities=39% Similarity=0.578 Sum_probs=17.5
Q ss_pred EEEEeCCC-cccccchHHHHHHHH
Q 017613 124 LVVVTGDR-GLCGGFNNNIIKKAE 146 (368)
Q Consensus 124 ~IvitSDr-GLCG~fN~~v~k~~~ 146 (368)
+-|||.|| ||||++|=-=.|++.
T Consensus 199 VCvvtPeR~~lCGaisW~D~rAa~ 222 (458)
T TIGR00316 199 VCIVTPDRPSLCGAINWFDARAAA 222 (458)
T ss_pred eEEECCCCcccccccchhhhhhhh
Confidence 44789998 999999976555554
No 24
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=27.38 E-value=38 Score=31.80 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=34.3
Q ss_pred EEEEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCC
Q 017613 122 VALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPY 177 (368)
Q Consensus 122 ~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~ 177 (368)
..||+|||=.|.+.-|+.-...... . -.+..+++||.+-...+++.|.
T Consensus 51 ~d~vvfTS~~av~~~~~~l~~~~~~-~-------~~~~~i~aVG~~Ta~~l~~~G~ 98 (248)
T COG1587 51 ADWVVFTSPNAVRFFFEALKEQGLD-A-------LKNKKIAAVGEKTAEALRKLGI 98 (248)
T ss_pred CCEEEEECHHHHHHHHHHHHhhccc-c-------cccCeEEEEcHHHHHHHHHhCC
Confidence 4699999999998665544322211 0 1246799999999999999874
No 25
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=27.35 E-value=21 Score=30.80 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=9.9
Q ss_pred CCcccccchHHH
Q 017613 130 DRGLCGGFNNNI 141 (368)
Q Consensus 130 DrGLCG~fN~~v 141 (368)
=+||||-||.+-
T Consensus 142 ~~GLCGn~ng~~ 153 (162)
T smart00216 142 TCGLCGNFDGEP 153 (162)
T ss_pred eeEccCCCCCCc
Confidence 479999999763
No 26
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=2.3e+02 Score=26.24 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHHhHhHHHHHHHHHHHHHH-----------HHHHHHHHHHhCccHHHHHHHHHHHH
Q 017613 44 IHCGLRELRERIDSVKNTQKITEAMKLVAAA-----------KVRRAQEAVVNGRPFSETLVEVLYNI 100 (368)
Q Consensus 44 m~a~lkeIk~RI~Sv~~t~kITkAMkmVAaa-----------Klrka~~~l~~~r~Y~~~i~~vl~~l 100 (368)
|-++|+.|..||.++++..+++.+||-+--+ ++.|.-..++....--+--.+++.+.
T Consensus 78 ~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~da 145 (224)
T KOG3230|consen 78 MKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDA 145 (224)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999876432 44555555554444444444455443
No 27
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=26.47 E-value=1.1e+02 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=29.1
Q ss_pred EEEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhCCCc
Q 017613 123 ALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRRPYI 178 (368)
Q Consensus 123 ~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~~~~ 178 (368)
.+|||||-.|.=. +.+....... ..+..+++||++-.+.+.+.|..
T Consensus 50 d~iifTS~naV~~---------~~~~~~~~~~-~~~~~~~aVG~~Ta~~l~~~G~~ 95 (240)
T PRK09189 50 GAIAVTSAEAVRH---------LAALGERLLP-HLALPLFAVGEATAEAARELGFR 95 (240)
T ss_pred CEEEEECHHHHHH---------HHhcchhhHH-hcCCeEEEEcHHHHHHHHHcCCC
Confidence 4899999887622 1111111110 11456999999999999988754
No 28
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.23 E-value=3.3e+02 Score=23.01 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=36.6
Q ss_pred EEEEEeCCCccc----ccchHHHHHHHHHHHHHHhhCCCceEEEEEe-----------hhhHHHHhhCCCcceeecccCC
Q 017613 123 ALVVVTGDRGLC----GGFNNNIIKKAEARIAELKTLGLDYTIISVG-----------KKGNAYFLRRPYIPVDRFLEGG 187 (368)
Q Consensus 123 ~~IvitSDrGLC----G~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG-----------~Kg~~~l~~~~~~~v~~~~~~~ 187 (368)
++||+|+-...- +..-.++ +.+.++.++ +....+++.| ...++++...|...-.-..+..
T Consensus 4 ~ivVlG~~~~~~~~~~~~~~~R~-~~a~~L~~~----g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~ 78 (155)
T PF02698_consen 4 AIVVLGSALDPDGQLSPESRERL-DEAARLYKA----GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPK 78 (155)
T ss_dssp EEEEES-----------S-HHHH-HHHHHHHH-----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE--
T ss_pred EEEECCcCccccccccHhHHHHH-HHHHHHHhc----CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCC
Confidence 467777222222 2333344 444455543 3345688888 3334566666632111111221
Q ss_pred CCCCHHHHHHHHHHHHHhhhcCCCcEEEEEecccccc
Q 017613 188 SLPTAKEAQTIADDVFSLFVSEEVDKVELLYTKFVSL 224 (368)
Q Consensus 188 ~~p~~~~a~~i~~~l~~~~~~~~~d~i~iiyn~f~s~ 224 (368)
...|++.+...... +...++..|.||-..|+..
T Consensus 79 s~~T~ena~~~~~~----~~~~~~~~iilVT~~~H~~ 111 (155)
T PF02698_consen 79 STNTYENARFSKRL----LKERGWQSIILVTSPYHMR 111 (155)
T ss_dssp --SHHHHHHHHHHH----HHT-SSS-EEEE--CCCHH
T ss_pred CCCHHHHHHHHHHH----HHhhcCCeEEEECCHHHHH
Confidence 23456666544433 3344568999988877553
No 29
>PF14156 AbbA_antirepres: Antirepressor AbbA
Probab=25.96 E-value=2.8e+02 Score=20.68 Aligned_cols=37 Identities=38% Similarity=0.489 Sum_probs=27.7
Q ss_pred HHHHH-HHHHHHHHHHHHHhHHHH-HHHHHHHHHHhHHH
Q 017613 315 SLASE-LASRMSAMSNATDNAMEL-KKNLSIVYNRQRQA 351 (368)
Q Consensus 315 S~aSE-~aARm~AM~~At~NA~el-i~~L~l~yNr~RQa 351 (368)
.+|+| .++-.+-.++-++|+++. -++|...|+|.|++
T Consensus 25 ~YA~Ells~El~DIE~G~K~vD~~~Yk~l~rLydRl~~E 63 (63)
T PF14156_consen 25 NYASELLSSELNDIENGTKNVDESQYKQLLRLYDRLRNE 63 (63)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcC
Confidence 34444 244466789999999876 58899999999974
No 30
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=25.71 E-value=29 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.7
Q ss_pred eCCCcccccchHHHHHH
Q 017613 128 TGDRGLCGGFNNNIIKK 144 (368)
Q Consensus 128 tSDrGLCG~fN~~v~k~ 144 (368)
-||-|+||+||+-|--.
T Consensus 194 iTDvGMtG~~dSviG~~ 210 (266)
T COG1692 194 ITDVGMTGPYDSVIGMN 210 (266)
T ss_pred EecCcccccccccccCC
Confidence 47999999999977433
No 31
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.00 E-value=1.2e+02 Score=21.65 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 017613 317 ASELASRMSAMSNATDNAMELKKNLSIVYNRQRQA 351 (368)
Q Consensus 317 aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa 351 (368)
..|.-.|+.+.|.-- +.=|++|...|...||-
T Consensus 10 ~~eL~~rl~~LD~~M---E~Eieelr~RY~~KRqP 41 (49)
T PF11629_consen 10 YEELQQRLASLDPEM---EQEIEELRQRYQAKRQP 41 (49)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHH---HHHHHHHHHHHHHhhcc
Confidence 457778888877654 45599999999999995
No 32
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.98 E-value=3.6e+02 Score=27.22 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017613 301 PLYLNSQILRALQESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVA 362 (368)
Q Consensus 301 ~~Yl~~~ly~alleS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVs 362 (368)
+.||+.++-..+-+ -.+...++..++..-+.+.+-+.+++.++|+ ||.||..|-.
T Consensus 261 Ek~iN~qle~l~~e--Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~-----IseeLe~vK~ 315 (359)
T PF10498_consen 261 EKYINNQLEPLIQE--YRSAQDELSEVQEKYKQASEGVSERTRELAE-----ISEELEQVKQ 315 (359)
T ss_pred HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHH
Confidence 45888877766666 5566778888888888888888888888854 7777776643
No 33
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=24.71 E-value=36 Score=25.77 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=10.3
Q ss_pred EEEEeCCCcccc
Q 017613 124 LVVVTGDRGLCG 135 (368)
Q Consensus 124 ~IvitSDrGLCG 135 (368)
+.++++++||||
T Consensus 14 l~l~a~e~gL~~ 25 (77)
T PF02870_consen 14 LLLAASEKGLCG 25 (77)
T ss_dssp EEEEEETTCEEE
T ss_pred EEEEEECCeEEE
Confidence 568999999995
No 34
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=24.32 E-value=4e+02 Score=24.66 Aligned_cols=71 Identities=17% Similarity=0.287 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHHHHhhcccCCCCCcccccCCCceEEEEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEEeh
Q 017613 87 RPFSETLVEVLYNINEQLQNEDIDVPLIKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARIAELKTLGLDYTIISVGK 166 (368)
Q Consensus 87 r~Y~~~i~~vl~~l~~~~~~~~~~~p~~~~~~~k~~~~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~ 166 (368)
-.|...|++++.+..... +...-.+|+|=+|-|. +.+ +.+.+.+.+-...+.-..++-||+
T Consensus 83 t~y~~vm~~v~~~y~~~~-------------~~~~P~~VlFiTDG~~----~~~--~~~~~~i~~as~~pifwqFVgiG~ 143 (200)
T PF10138_consen 83 TNYAPVMEDVLDHYFKRE-------------PSDAPALVLFITDGGP----DDR--RAIEKLIREASDEPIFWQFVGIGD 143 (200)
T ss_pred cchHHHHHHHHHHHhhcC-------------CCCCCeEEEEEecCCc----cch--HHHHHHHHhccCCCeeEEEEEecC
Confidence 567777777776653211 1111257888889664 333 445555544333333356788999
Q ss_pred hhHHHHhhCC
Q 017613 167 KGNAYFLRRP 176 (368)
Q Consensus 167 Kg~~~l~~~~ 176 (368)
...++|++..
T Consensus 144 ~~f~fL~kLD 153 (200)
T PF10138_consen 144 SNFGFLEKLD 153 (200)
T ss_pred CcchHHHHhh
Confidence 9999998753
No 35
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=24.01 E-value=30 Score=29.27 Aligned_cols=12 Identities=42% Similarity=0.966 Sum_probs=9.8
Q ss_pred CCcccccchHHH
Q 017613 130 DRGLCGGFNNNI 141 (368)
Q Consensus 130 DrGLCG~fN~~v 141 (368)
=.||||.||.+-
T Consensus 138 t~GLCG~~dg~~ 149 (159)
T PF00094_consen 138 TCGLCGNFDGEP 149 (159)
T ss_pred cccccCCCCCCc
Confidence 359999999874
No 36
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.63 E-value=1.9e+02 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=34.1
Q ss_pred EEEEEeCCCcccc-cchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHH---HHhhCC
Q 017613 123 ALVVVTGDRGLCG-GFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNA---YFLRRP 176 (368)
Q Consensus 123 ~~IvitSDrGLCG-~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~---~l~~~~ 176 (368)
.++++|.|=|++| .|....++.+.+..+.....+.+..+.+.|.--.+ .+.+.|
T Consensus 131 ~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aG 188 (220)
T PRK08883 131 LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAG 188 (220)
T ss_pred eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC
Confidence 5788999999987 48887777776654433223334667777754433 344445
No 37
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=23.63 E-value=2e+02 Score=28.73 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017613 314 ESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIV 361 (368)
Q Consensus 314 eS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIV 361 (368)
.+..++..++..-++.+.+|.+.+.+.|+....+.|-.-.++|+.+..
T Consensus 285 ~~~ra~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~ 332 (360)
T COG1344 285 TSARAELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELT 332 (360)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 378899999999999999999999999999999999999999998863
No 38
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=23.42 E-value=4.2e+02 Score=26.54 Aligned_cols=33 Identities=30% Similarity=0.372 Sum_probs=23.8
Q ss_pred ccccHHHHHHHHHHhHh-----HHHHHHHHHHHHHHHH
Q 017613 44 IHCGLRELRERIDSVKN-----TQKITEAMKLVAAAKV 76 (368)
Q Consensus 44 m~a~lkeIk~RI~Sv~~-----t~kITkAMkmVAaaKl 76 (368)
||.+|.++|++|..+.. +.+=.+.++-|+..|-
T Consensus 1 ~~~~L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~ 38 (374)
T PRK11199 1 MVAELTALRDQIDEVDKQLLELLAKRLELVAQVGEVKS 38 (374)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998865 3333445666677663
No 39
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=23.19 E-value=2.1e+02 Score=27.57 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017613 313 QESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVA 362 (368)
Q Consensus 313 leS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVs 362 (368)
+-...+|.++|+.-|+.+.++.++....|+...++.+-.-+.++++|...
T Consensus 214 v~~~~a~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~~~l~~ 263 (287)
T PRK08073 214 IINRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAY 263 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999998753
No 40
>PRK12803 flagellin; Provisional
Probab=22.97 E-value=2.8e+02 Score=27.63 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017613 313 QESLASELASRMSAMSNATDNAMELKKNLSIVYNRQRQAKITGEILEIVA 362 (368)
Q Consensus 313 leS~aSE~aARm~AM~~At~NA~eli~~L~l~yNr~RQa~IT~EI~EIVs 362 (368)
+.+..++..||..-++.+.+|.+.....|+..+-|.|-+-+.+|+.+...
T Consensus 259 v~~~Ra~lGA~qNRle~~~~~l~~~~~nl~~a~S~i~D~D~A~e~~~~~~ 308 (335)
T PRK12803 259 ISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTT 308 (335)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999998753
No 41
>COG3377 Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=1.3e+02 Score=24.40 Aligned_cols=42 Identities=29% Similarity=0.528 Sum_probs=31.8
Q ss_pred EEEEEeCCCcc--cccchHHHHHHHHHHHHHHhhCCCceEEEEEehhhHHHHhhC
Q 017613 123 ALVVVTGDRGL--CGGFNNNIIKKAEARIAELKTLGLDYTIISVGKKGNAYFLRR 175 (368)
Q Consensus 123 ~~IvitSDrGL--CG~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~~~l~~~ 175 (368)
=++++.+++|+ ||-.|-.....+ + +...-++|-|..+-+.+.
T Consensus 25 pll~~~~ekgy~mCGyLnv~a~ek~----------g-d~A~rv~GVrt~ddml~A 68 (95)
T COG3377 25 PLLALKGEKGYAMCGYLNVEAAEKV----------G-DTAVRVVGVRTFDDMLSA 68 (95)
T ss_pred cEEEEEccccEEEecceeHHHHHhh----------c-ceeeEEEeeeeHHHHhcc
Confidence 36789999996 999998765443 2 456788999999887653
No 42
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=21.39 E-value=1.5e+02 Score=22.48 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 017613 283 SPILQFEQDPVQILDALLPLYLNSQILRALQ 313 (368)
Q Consensus 283 ~~~~~fEp~~e~il~~L~~~Yl~~~ly~all 313 (368)
+|...++|+.+++|-++...|+...+-.|+.
T Consensus 13 Dp~~~ld~~vee~Ll~laddFv~~v~~~ac~ 43 (68)
T PF03847_consen 13 DPNEKLDPDVEELLLELADDFVDDVVSFACR 43 (68)
T ss_dssp -SS----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999877655443
No 43
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=20.97 E-value=5e+02 Score=22.84 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Q 017613 49 RELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINE 102 (368)
Q Consensus 49 keIk~RI~Sv~~t~kITkAMkmVAaaKlrka~~~l~~~r~Y~~~i~~vl~~l~~ 102 (368)
.++..+++-++-+++||+-| |+..=+-..-..+..-|.|..--...|-.++-
T Consensus 37 d~li~kLN~~~~Lk~IT~lM--Is~~FlDEFY~ILn~nR~y~s~YK~~L~~Ily 88 (163)
T PF07341_consen 37 DELIDKLNNLQYLKEITSLM--ISPGFLDEFYEILNQNREYSSLYKYYLPTILY 88 (163)
T ss_pred hHHHHHhhhHHHHHHHHHHH--cCHhHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 46689999999999999975 88888888888899999998888777766654
No 44
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.52 E-value=7e+02 Score=23.25 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=36.4
Q ss_pred EEEEEeCCCcccc-cchHHHHHHHHHHHHHHhhCCCceEEEEEehhhH---HHHhhCC
Q 017613 123 ALVVVTGDRGLCG-GFNNNIIKKAEARIAELKTLGLDYTIISVGKKGN---AYFLRRP 176 (368)
Q Consensus 123 ~~IvitSDrGLCG-~fN~~v~k~~~~~i~~~~~~~~~~~l~~VG~Kg~---~~l~~~~ 176 (368)
.++|+|.+=|++| .|+...++.+.++-+-....+.+..+.+=|.-.. ..+...|
T Consensus 135 ~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aG 192 (223)
T PRK08745 135 LVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAG 192 (223)
T ss_pred EEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC
Confidence 5789999999998 5999998888775443333344566676564443 3445555
Done!