Your job contains 1 sequence.
>017615
MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI
TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV
QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV
CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV
EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYW
IDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK
REEALQLA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017615
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116164 - symbol:HDR "4-hydroxy-3-methylbut-2-... 1582 1.7e-162 1
TIGR_CMR|NSE_0438 - symbol:NSE_0438 "4-hydroxy-3-methylbu... 174 3.5e-17 2
TIGR_CMR|CJE_0973 - symbol:CJE_0973 "4-hydroxy-3-methylbu... 150 8.9e-16 2
TIGR_CMR|VC_0685 - symbol:VC_0685 "hydroxymethylbutenyl p... 144 8.5e-15 2
UNIPROTKB|Q749Y8 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 201 9.5e-15 1
TIGR_CMR|GSU_2604 - symbol:GSU_2604 "penicillin tolerance... 201 9.5e-15 1
TIGR_CMR|ECH_0502 - symbol:ECH_0502 "hydroxymethylbutenyl... 200 6.4e-14 1
UNIPROTKB|Q81LU9 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 144 7.3e-14 2
TIGR_CMR|BA_4511 - symbol:BA_4511 "penicillin tolerance p... 144 7.3e-14 2
TIGR_CMR|CPS_1211 - symbol:CPS_1211 "4-hydroxy-3-methylbu... 142 9.0e-14 2
UNIPROTKB|P62623 - symbol:ispH "1-hydroxy-2-methyl-2-(E)-... 138 1.2e-13 2
UNIPROTKB|Q8EBI7 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 156 5.2e-13 2
TIGR_CMR|SO_3529 - symbol:SO_3529 "penicillin tolerance p... 156 5.2e-13 2
TIGR_CMR|APH_0380 - symbol:APH_0380 "4-hydroxy-3-methylbu... 181 1.4e-11 1
GENEDB_PFALCIPARUM|PFA0225w - symbol:lytB "LytB protein" ... 159 1.4e-11 2
UNIPROTKB|Q8I295 - symbol:lytB "LytB protein" species:363... 159 1.4e-11 2
TIGR_CMR|SPO_3207 - symbol:SPO_3207 "4-hydroxy-3-methylbu... 137 6.0e-11 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 179 1.2e-10 1
TIGR_CMR|DET_1344 - symbol:DET_1344 "hydroxymethylbutenyl... 158 4.2e-09 1
>TAIR|locus:2116164 [details] [associations]
symbol:HDR "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:3702 "Arabidopsis thaliana" [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS]
[GO:0046677 "response to antibiotic" evidence=ISS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
activity" evidence=IGI] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0009570 EMBL:CP002687 GO:GO:0046872
GO:GO:0051538 GO:GO:0016114 EMBL:AL035521 EMBL:AL161585
GO:GO:0019288 GO:GO:0050992 GO:GO:0046429 EMBL:AY883838
EMBL:AY168881 EMBL:AY042877 EMBL:AY081454 EMBL:AK317707
EMBL:AK222055 IPI:IPI00536800 PIR:T04781 RefSeq:NP_567965.1
UniGene:At.2618 ProteinModelPortal:Q94B35 SMR:Q94B35 STRING:Q94B35
PRIDE:Q94B35 EnsemblPlants:AT4G34350.1 GeneID:829585
KEGG:ath:AT4G34350 TAIR:At4g34350 InParanoid:Q94B35 KO:K03527
OMA:QDAMFSL PhylomeDB:Q94B35 ProtClustDB:PLN02821
BioCyc:ARA:AT4G34350-MONOMER-9581
BioCyc:MetaCyc:AT4G34350-MONOMER-9581 Genevestigator:Q94B35
GO:GO:0051745 TIGRFAMs:TIGR00216 Uniprot:Q94B35
Length = 466
Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
Identities = 300/380 (78%), Positives = 340/380 (89%)
Query: 1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWI 60
MN+EYTSDI++ LK NG+ Y+WG+V VKLA++YGFCWGVERAVQIAYEARKQFPEE++WI
Sbjct: 87 MNREYTSDILETLKTNGYTYSWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPEERLWI 146
Query: 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 120
TNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPAFGA V+EM LN+K V
Sbjct: 147 TNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPAFGAGVDEMYVLNDKKV 206
Query: 121 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180
QIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASFAGKYIIVKNMKEA YV
Sbjct: 207 QIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKEANYV 266
Query: 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240
CDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIANQTTMLKGETEEIG+L+
Sbjct: 267 CDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEIGRLL 326
Query: 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------ 288
E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL+LVV
Sbjct: 327 ETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDLMLVVGGWNSSNTSHLQ 386
Query: 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 348
EI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG ITIG+TSGASTPDK
Sbjct: 387 EISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKGPITIGVTSGASTPDKV 446
Query: 349 VEDVLKKVFEIKREEALQLA 368
VED L KVF+IKREE LQLA
Sbjct: 447 VEDALVKVFDIKREELLQLA 466
>TIGR_CMR|NSE_0438 [details] [associations]
symbol:NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 OMA:DPRSNNS RefSeq:YP_506323.1 STRING:Q2GDX3
GeneID:3932177 KEGG:nse:NSE_0438 PATRIC:22680929
ProtClustDB:CLSK2528057 BioCyc:NSEN222891:GHFU-459-MONOMER
Uniprot:Q2GDX3
Length = 303
Score = 174 (66.3 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 41/128 (32%), Positives = 71/128 (55%)
Query: 34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV 93
GFC GVERA++ A +++PE+KI++ +EI+HN V + + V I E+ K
Sbjct: 10 GFCAGVERAIETVEIAIRRYPEKKIFVYHEIVHNSRVIQDFKARGVDFI--EDITK---- 63
Query: 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153
V V++ A G + E + + ++ +VD TCP VSK+ V++ +K + ++ G
Sbjct: 64 VEPKSVLIFSAHGVSEEIEKYVKSLDLVLVDATCPLVSKIHREVQRFEKEGFIILVIGNR 123
Query: 154 SHEETVAT 161
+H E + T
Sbjct: 124 NHAEIIGT 131
Score = 96 (38.9 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 250 VENVNEHF---ISFNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKR 306
+ + E F + + +C ATQ RQ+A+ K + ++VDL+L+V +S
Sbjct: 175 INKIKEKFPNVVGRSDVCYATQNRQEAV-KALAKEVDLMLIVGSTNSS-------NSRNL 226
Query: 307 IGPGNKIAYK--LMHGELVEKENWLPKGQITIGITSGASTPDKAVEDV---LKKVF 357
+ +KI K L+ + +W +G +GI+SGAS P+ V+D+ LKK F
Sbjct: 227 MQVSSKICQKAFLIDNYNEVEPDWF-EGVDRVGISSGASAPEILVQDLVSFLKKRF 281
>TIGR_CMR|CJE_0973 [details] [associations]
symbol:CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:195099 "Campylobacter jejuni RM1221" [GO:0015968
"stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS ProtClustDB:PRK01045 RefSeq:YP_178971.1 STRING:Q5HUR4
GeneID:3231484 KEGG:cjr:CJE0973 PATRIC:20043729
HOGENOM:HOG000220193 BioCyc:CJEJ195099:GJC0-993-MONOMER
Uniprot:Q5HUR4
Length = 277
Score = 150 (57.9 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 40/155 (25%), Positives = 74/155 (47%)
Query: 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE 86
++LA++YGFC+GV+RA++ A + + + NE I + K ++NI
Sbjct: 3 IELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISR--LQKNFNVKTLENIQALS 60
Query: 87 GKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146
+K+ ++ G +++ L K+++I D TCP+V+K E+ K Y
Sbjct: 61 NEKK---------AIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQICEQMSKEGYE 111
Query: 147 SIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV 180
+I G +H E S+ K +V + KE + +
Sbjct: 112 VVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNI 146
Score = 109 (43.4 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 33/101 (32%), Positives = 55/101 (54%)
Query: 260 FNTICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMH 319
FNTICDAT + QDA+ K + K D+++VV ++ ++ + +Y +
Sbjct: 182 FNTICDATFKNQDAI-KELSLKSDVMVVVGGKNSANTKQLFLIAKTNC----EDSYLIET 236
Query: 320 GELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 360
E ++KE +L K GI++GASTPD ++ V+ K+ K
Sbjct: 237 EEELKKEWFLDKKHC--GISAGASTPDWIIQKVIAKIENFK 275
>TIGR_CMR|VC_0685 [details] [associations]
symbol:VC_0685 "hydroxymethylbutenyl pyrophosphate
reductase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 OMA:QDAMFSL GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 ProtClustDB:PRK01045 PIR:G82293 RefSeq:NP_230334.2
DNASU:2615474 GeneID:2615474 KEGG:vch:VC0685 PATRIC:20080487
Uniprot:Q9KU44
Length = 316
Score = 144 (55.7 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 41/153 (26%), Positives = 74/153 (48%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+K+ LA GFC GV+RA+ I A + + + I++ +E++HN V + L++ + V
Sbjct: 1 MKILLANPRGFCAGVDRAISIVERALELY-QPPIYVRHEVVHNRFVVEGLKQRGARF--V 57
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
EE + V ++V+ A G + +++ + D TCP V+KV V + +
Sbjct: 58 EE----LNEVPDDNIVIFSAHGVSQAVRQEAKERSLTVFDATCPLVTKVHMEVARASRKH 113
Query: 145 YTSIIHGKYSHEETVAT-ASFA----GKYIIVK 172
++ G H E T +A G Y++ K
Sbjct: 114 MEVVLIGHAGHPEVEGTMGQYASDTGGMYLVEK 146
Score = 110 (43.8 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 32/97 (32%), Positives = 54/97 (55%)
Query: 263 ICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL 322
IC ATQ RQDA+ +++ E+VD+++VV +EK PG Y + +
Sbjct: 198 ICYATQNRQDAV-RILAEQVDVMVVVGSKNSSNSTRLKELAEKLGTPG----YLIDCPQD 252
Query: 323 VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 359
++ E W Q+ IG+T+GAS P++ V +L ++ E+
Sbjct: 253 IDPE-WFVDAQL-IGVTAGASAPEELVNQILDRIKEL 287
>UNIPROTKB|Q749Y8 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 201 (75.8 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 64/247 (25%), Positives = 121/247 (48%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+++ LA+ GFC+GV+RA Q+A+EA ++ E + + IIH+P V +RLE M V+ +
Sbjct: 1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
EG + G V++ + G E+ + +++VD TCP+V K V++
Sbjct: 59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111
Query: 145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
YT ++ G H E S+A G +V + +EA + + G + ++ + E
Sbjct: 112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171
Query: 204 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263
K+ + KG ++ + I + T + + E + + + V+ M+ G + N ++ +
Sbjct: 172 KECLLKG--GEIRVFNT-ICDATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EV 225
Query: 264 CDATQER 270
C Q R
Sbjct: 226 CSELQPR 232
>TIGR_CMR|GSU_2604 [details] [associations]
symbol:GSU_2604 "penicillin tolerance protein LytB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 201 (75.8 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 64/247 (25%), Positives = 121/247 (48%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+++ LA+ GFC+GV+RA Q+A+EA ++ E + + IIH+P V +RLE M V+ +
Sbjct: 1 MEIVLAKRAGFCFGVKRATQMAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSD 58
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
EG + G V++ + G E+ + +++VD TCP+V K V++
Sbjct: 59 LEG------IGNGTVIIR-SHGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDG 111
Query: 145 YTSIIHGKYSHEETVATASFA-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
YT ++ G H E S+A G +V + +EA + + G + ++ + E
Sbjct: 112 YTVVVVGDADHPEVQGIVSYAEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVV 171
Query: 204 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263
K+ + KG ++ + I + T + + E + + + V+ M+ G + N ++ +
Sbjct: 172 KECLLKG--GEIRVFNT-ICDATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EV 225
Query: 264 CDATQER 270
C Q R
Sbjct: 226 CSELQPR 232
>TIGR_CMR|ECH_0502 [details] [associations]
symbol:ECH_0502 "hydroxymethylbutenyl pyrophosphate
reductase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0051538 GO:GO:0016114 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
OMA:LVTKVHQ RefSeq:YP_507317.1 STRING:Q2GGW6 GeneID:3927316
KEGG:ech:ECH_0502 PATRIC:20576476
BioCyc:ECHA205920:GJNR-504-MONOMER Uniprot:Q2GGW6
Length = 319
Score = 200 (75.5 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 64/221 (28%), Positives = 104/221 (47%)
Query: 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEE-KIWITNEIIHNPTVNKRLEEMAVQNI 82
NV+V LA GFC GV RA++I A K + K+++ +EI+HN + L+EM V I
Sbjct: 8 NVEVILANPRGFCAGVSRAIEIVKLAVKYHSDNRKVYVLHEIVHNKYIINSLKEMGVIFI 67
Query: 83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHK 141
D G +++ A G + +E+ L N++I+D TCP V+KV V+ +
Sbjct: 68 DT------LDQAEDGSILIYSAHGIS-KEIEHLGQSCNLEIIDATCPLVNKVHKEVQAYD 120
Query: 142 KGDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNMKEAEYV----CD---YILGGELNGSS 193
K Y I+ G H E T ++V+N+ + + + D Y+ L+
Sbjct: 121 KKGYQIILIGHKGHREVEGTMGQITNPVLLVQNLSDIDNIEVTNSDKLAYVTQTTLS-VD 179
Query: 194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETE 234
TKE + K K+ PD+ + N+ T +K +E
Sbjct: 180 DTKE-IINKLKQKFPNIKGPDLKDICYATQNRQTAVKQLSE 219
>UNIPROTKB|Q81LU9 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051538
GO:GO:0019288 GO:GO:0050992 KO:K03527 GO:GO:0051745
TIGRFAMs:TIGR00216 RefSeq:NP_846735.1 RefSeq:YP_021156.1
RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 144 (55.7 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 48/167 (28%), Positives = 75/167 (44%)
Query: 27 VKLAESYGFCWGVERAVQIAYEAR--KQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
VK++ G+C+GV A+ IA A P I+I I+HN V EE + +
Sbjct: 4 VKISPR-GYCYGVVDAMVIARNAALDTSLPRP-IYILGMIVHNKHVTDAFEEDGIITL-- 59
Query: 85 EEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
+G + D+++K D V+ A G + E K + +D TCP V+K +E K
Sbjct: 60 -DGPSRLDILDKIDSGTVIFTAHGVSPEVKQRAKEKGLTTIDATCPDVTKTHDLIEAKKA 118
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYI-IVK---NMKEAEYVCDYIL 185
Y I GK +H E A + +++ ++K E D IL
Sbjct: 119 EGYHVIYIGKKNHPEPEGAVGIAPDIVHLIERADDLKTLEIPTDKIL 165
Score = 101 (40.6 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 38/135 (28%), Positives = 68/135 (50%)
Query: 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 278
K+ + NQTTM + + + + + ++K KF ++ IC ATQ RQ+A+ K
Sbjct: 163 KILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEAVAKQA 212
Query: 279 EEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 338
+ DL +VV + + S + + G K AY++ ++ E WL +G + +
Sbjct: 213 DV-ADLTIVV--GDPKSNNSNRLAQVSQEIAGTK-AYRVADVSEIKLE-WL-QGVENVAV 266
Query: 339 TSGASTPDKAVEDVL 353
T+GASTP ++V+
Sbjct: 267 TAGASTPTPITKEVI 281
>TIGR_CMR|BA_4511 [details] [associations]
symbol:BA_4511 "penicillin tolerance protein LytB"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 RefSeq:NP_846735.1
RefSeq:YP_021156.1 RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 144 (55.7 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 48/167 (28%), Positives = 75/167 (44%)
Query: 27 VKLAESYGFCWGVERAVQIAYEAR--KQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
VK++ G+C+GV A+ IA A P I+I I+HN V EE + +
Sbjct: 4 VKISPR-GYCYGVVDAMVIARNAALDTSLPRP-IYILGMIVHNKHVTDAFEEDGIITL-- 59
Query: 85 EEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
+G + D+++K D V+ A G + E K + +D TCP V+K +E K
Sbjct: 60 -DGPSRLDILDKIDSGTVIFTAHGVSPEVKQRAKEKGLTTIDATCPDVTKTHDLIEAKKA 118
Query: 143 GDYTSIIHGKYSHEETVATASFAGKYI-IVK---NMKEAEYVCDYIL 185
Y I GK +H E A + +++ ++K E D IL
Sbjct: 119 EGYHVIYIGKKNHPEPEGAVGIAPDIVHLIERADDLKTLEIPTDKIL 165
Score = 101 (40.6 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 38/135 (28%), Positives = 68/135 (50%)
Query: 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 278
K+ + NQTTM + + + + + ++K KF ++ IC ATQ RQ+A+ K
Sbjct: 163 KILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEAVAKQA 212
Query: 279 EEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 338
+ DL +VV + + S + + G K AY++ ++ E WL +G + +
Sbjct: 213 DV-ADLTIVV--GDPKSNNSNRLAQVSQEIAGTK-AYRVADVSEIKLE-WL-QGVENVAV 266
Query: 339 TSGASTPDKAVEDVL 353
T+GASTP ++V+
Sbjct: 267 TAGASTPTPITKEVI 281
>TIGR_CMR|CPS_1211 [details] [associations]
symbol:CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0046677 "response to antibiotic" evidence=ISS] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_267954.1
STRING:Q486R1 GeneID:3519583 KEGG:cps:CPS_1211 PATRIC:21465667
OMA:LVTKVHQ BioCyc:CPSY167879:GI48-1292-MONOMER Uniprot:Q486R1
Length = 309
Score = 142 (55.0 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 43/151 (28%), Positives = 70/151 (46%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+++ LA GFC GV+RA+ I A F I++ +E++HN V L++ I V
Sbjct: 1 MEIILANPRGFCAGVDRAISIVERALDLFGAP-IYVRHEVVHNKFVVDGLKDRGA--IFV 57
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
+E D V + V+ A G + + +++ D TCP V+KV V + + D
Sbjct: 58 DE----LDEVPDDNTVIFSAHGVSKAVRQEAKTRALKVFDATCPLVTKVHMEVSRVSRKD 113
Query: 145 YTSIIHGKYSHEETVAT-----ASFAGKYII 170
I+ G H E T + AG Y++
Sbjct: 114 IECILIGHAGHPEVEGTMGQYSSDSAGIYLV 144
Score = 102 (41.0 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 263 ICDATQERQDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL 322
IC ATQ RQDA+ + + +KVDL+LVV A++ + + ++G +Y + E
Sbjct: 196 ICYATQNRQDAV-REIADKVDLMLVVG-AKNSSNSNRLKELASKMGV---TSYLIDTAEN 250
Query: 323 VEKENWLPKGQITIGITSGASTPDKAVEDVLK 354
+E + WL G +G+T+GAS P ++ V++
Sbjct: 251 IETD-WLT-GVNKVGVTAGASAPAVLIKQVVE 280
>UNIPROTKB|P62623 [details] [associations]
symbol:ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
reductase" species:83333 "Escherichia coli K-12" [GO:0050992
"dimethylallyl diphosphate biosynthetic process" evidence=IEA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051745
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"
evidence=IEA] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
[GO:0046677 "response to antibiotic" evidence=IDA] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401
UniPathway:UPA00056 UniPathway:UPA00059 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0046677 GO:GO:0006744 GO:GO:0051538 GO:GO:0019288 EMBL:X54945
GO:GO:0050992 KO:K03527 OMA:QDAMFSL GO:GO:0051745
TIGRFAMs:TIGR00216 eggNOG:COG0761 HOGENOM:HOG000220192
ProtClustDB:PRK01045 EMBL:AY062212 PIR:JE0403 RefSeq:NP_414570.1
RefSeq:YP_488335.1 PDB:3F7T PDB:3KE8 PDB:3KE9 PDB:3KEF PDB:3KEL
PDB:3KEM PDB:3SZL PDB:3SZO PDB:3SZU PDB:3T0F PDB:3T0G PDB:3URK
PDB:3UTC PDB:3UTD PDB:3UV3 PDB:3UV6 PDB:3UV7 PDB:3UWM PDB:3ZGL
PDB:3ZGN PDBsum:3F7T PDBsum:3KE8 PDBsum:3KE9 PDBsum:3KEF
PDBsum:3KEL PDBsum:3KEM PDBsum:3SZL PDBsum:3SZO PDBsum:3SZU
PDBsum:3T0F PDBsum:3T0G PDBsum:3URK PDBsum:3UTC PDBsum:3UTD
PDBsum:3UV3 PDBsum:3UV6 PDBsum:3UV7 PDBsum:3UWM PDBsum:3ZGL
PDBsum:3ZGN ProteinModelPortal:P62623 SMR:P62623 DIP:DIP-35808N
IntAct:P62623 PaxDb:P62623 PRIDE:P62623
EnsemblBacteria:EBESCT00000002954 EnsemblBacteria:EBESCT00000002955
EnsemblBacteria:EBESCT00000002956 EnsemblBacteria:EBESCT00000002957
EnsemblBacteria:EBESCT00000017150 GeneID:12933923 GeneID:944777
KEGG:ecj:Y75_p0029 KEGG:eco:b0029 PATRIC:32115149 EchoBASE:EB1073
EcoGene:EG11081 BioCyc:EcoCyc:EG11081-MONOMER
BioCyc:ECOL316407:JW0027-MONOMER BioCyc:MetaCyc:EG11081-MONOMER
BRENDA:1.17.1.2 EvolutionaryTrace:P62623 Genevestigator:P62623
GO:GO:0042380 Uniprot:P62623
Length = 316
Score = 138 (53.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+++ LA GFC GV+RA+ I A + I++ +E++HN V L E I +
Sbjct: 1 MQILLANPRGFCAGVDRAISIVENALAIYGAP-IYVRHEVVHNRYVVDSLRERGA--IFI 57
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
E Q V G +++ A G + ++++ + D TCP V+KV V + +
Sbjct: 58 E----QISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRG 113
Query: 145 YTSIIHGKYSHEETVAT 161
SI+ G H E T
Sbjct: 114 EESILIGHAGHPEVEGT 130
Score = 106 (42.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 36/149 (24%), Positives = 79/149 (53%)
Query: 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 278
K+ QTT+ +T ++ + K + G + IC AT RQ+A+ + +
Sbjct: 160 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAV-RAL 210
Query: 279 EEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 338
E+ +++LVV +++ + + +R+G K A+ + + +++E W+ + + +G+
Sbjct: 211 AEQAEVVLVVG-SKNSSNSNRLAELAQRMG---KRAFLIDDAKDIQEE-WVKEVKC-VGV 264
Query: 339 TSGASTPDKAVEDVLKKVFEIKREEALQL 367
T+GAS PD V++V+ ++ ++ EA+ L
Sbjct: 265 TAGASAPDILVQNVVARLQQLGGGEAIPL 293
>UNIPROTKB|Q8EBI7 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 156 (60.0 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
F+ T ++ + LA GFC GV+RA+ I A + F I++ +E++HN V + L++
Sbjct: 3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61
Query: 78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
+ VEE D V ++V+ A G + + +++ D TCP V+KV V
Sbjct: 62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115
Query: 138 EKHKKGDYTSIIHGKYSHEETVAT 161
+ + I+ G H E T
Sbjct: 116 TRASRKGIECILIGHAGHPEVEGT 139
Score = 79 (32.9 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 35/150 (23%), Positives = 73/150 (48%)
Query: 214 DVDLVKVGIANQTTMLKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICDATQER 270
DV+ ++V N + T + ++ ++++F +E + + IC ATQ R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 271 QDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP 330
QDA+ + + VDL++VV S + E + G + +Y + + ++ +W
Sbjct: 213 QDAVRNLSAD-VDLLIVV--GSKNSSNSNRL-RELALKTGTQ-SYLVDTADDIDS-SWFE 266
Query: 331 KGQIT-IGITSGASTPDKAVEDVLKKVFEI 359
IT + +T+GAS P+ V+ V++ + ++
Sbjct: 267 N--ITKVAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|SO_3529 [details] [associations]
symbol:SO_3529 "penicillin tolerance protein LytB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 156 (60.0 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 18 FEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM 77
F+ T ++ + LA GFC GV+RA+ I A + F I++ +E++HN V + L++
Sbjct: 3 FDPTSPSLNIMLANPRGFCAGVDRAISIVERALELF-SPPIYVRHEVVHNRYVVQNLKDR 61
Query: 78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137
+ VEE D V ++V+ A G + + +++ D TCP V+KV V
Sbjct: 62 GA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKARGLRVFDATCPLVTKVHLQV 115
Query: 138 EKHKKGDYTSIIHGKYSHEETVAT 161
+ + I+ G H E T
Sbjct: 116 TRASRKGIECILIGHAGHPEVEGT 139
Score = 79 (32.9 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
Identities = 35/150 (23%), Positives = 73/150 (48%)
Query: 214 DVDLVKVGIANQTTMLKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICDATQER 270
DV+ ++V N + T + ++ ++++F +E + + IC ATQ R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 271 QDAMYKMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP 330
QDA+ + + VDL++VV S + E + G + +Y + + ++ +W
Sbjct: 213 QDAVRNLSAD-VDLLIVV--GSKNSSNSNRL-RELALKTGTQ-SYLVDTADDIDS-SWFE 266
Query: 331 KGQIT-IGITSGASTPDKAVEDVLKKVFEI 359
IT + +T+GAS P+ V+ V++ + ++
Sbjct: 267 N--ITKVAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|APH_0380 [details] [associations]
symbol:APH_0380 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_504986.1
STRING:Q2GKW5 GeneID:3931091 KEGG:aph:APH_0380 PATRIC:20949366
OMA:EENIEFR BioCyc:APHA212042:GHPM-408-MONOMER Uniprot:Q2GKW5
Length = 324
Score = 181 (68.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 70/271 (25%), Positives = 117/271 (43%)
Query: 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEK-IWITNEIIHNPTVNKRLEEMAVQNI 82
+V+V LA+ GFC GVERAV I Q+ K +++ +EI+HN V +E +N+
Sbjct: 7 DVEVILAQPRGFCAGVERAVAILDMVVDQYIASKEVYVLHEIVHNAYV---VESFRKRNV 63
Query: 83 PVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142
D V G V+V A G A + + + ++D TCP V+KV + ++ K
Sbjct: 64 KFVAS---LDEVPTGAVLVFSAHGVAKQVRAAAQERGLVVIDATCPLVTKVHLEIHRYNK 120
Query: 143 GDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNMKE-------AEYVCDYILGGELNGSSS 194
Y I+ G H E + + ++V+N+ + AE Y+ L S
Sbjct: 121 NGYKIILIGHKGHREVEGSMGQIQSEVLLVQNVDDVYNLPVDAETKLAYVTQTTL--SVD 178
Query: 195 TKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVN 254
+E K PD+ + N+ T +K E+ +V+ +M G +N +
Sbjct: 179 DTRVIVEALKTRFPDIVGPDLKDICYATQNRQTAVK----ELASMVD--VMLIMGGKNSS 232
Query: 255 EHFISFNTICDATQERQDAMYKMVE-EKVDL 284
+ N + D + R + + E VDL
Sbjct: 233 ----NTNRLLDLAKVRNPRSFLIGSYEDVDL 259
>GENEDB_PFALCIPARUM|PFA0225w [details] [associations]
symbol:lytB "LytB protein" species:5833
"Plasmodium falciparum" [GO:0020011 "apicoplast" evidence=IDA]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 GO:GO:0055114
EMBL:AL844501 GO:GO:0019288 GO:GO:0020011 KO:K03527
TIGRFAMs:TIGR00216 HOGENOM:HOG000220192 GenomeReviews:AL844501_GR
RefSeq:XP_001350977.1 ProteinModelPortal:Q8I295 PRIDE:Q8I295
EnsemblProtists:PFA0225w:mRNA GeneID:813182 KEGG:pfa:PFA_0225w
ProtClustDB:CLSZ2431638 Uniprot:Q8I295
Length = 535
Score = 159 (61.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 44/146 (30%), Positives = 75/146 (51%)
Query: 34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV 93
GFC GV RA++ E K F + I++ ++I+HN V K+LE+ I +E+ +
Sbjct: 229 GFCKGVSRAIETVEECLKLF-KPPIYVKHKIVHNDIVCKKLEKEGA--IFIED----LND 281
Query: 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153
V G +++ A G + + K + +D TCP V+KV V+ K +Y I+ G
Sbjct: 282 VPDGHILIYSAHGISPQIREIAKKKKLIEIDATCPLVNKVHVYVQMKAKENYDIILIGYK 341
Query: 154 SHEETVATASFAGKYI-IVKNMKEAE 178
+H E + T + A IV+N+ + +
Sbjct: 342 NHVEVIGTYNEAPHCTHIVENVNDVD 367
Score = 71 (30.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/133 (25%), Positives = 58/133 (43%)
Query: 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKM 277
K+ QTT+ ++ +V+K + KF +E + +IC AT RQ A+ K+
Sbjct: 376 KLFYVTQTTL---SMDDCALIVQK-LKNKFPHIETIPS-----GSICYATTNRQTALNKI 426
Query: 278 VEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIG 337
K DL +VV + S+ R P + +H + + + K I
Sbjct: 427 CT-KCDLTIVVGSSSSSNAKKLVYSSQIRNVPA--VLLNTVH----DLDQQILKNVNKIA 479
Query: 338 ITSGASTPDKAVE 350
+TS ASTP++ +
Sbjct: 480 LTSAASTPEQETQ 492
>UNIPROTKB|Q8I295 [details] [associations]
symbol:lytB "LytB protein" species:36329 "Plasmodium
falciparum 3D7" [GO:0020011 "apicoplast" evidence=IDA]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 GO:GO:0055114
EMBL:AL844501 GO:GO:0019288 GO:GO:0020011 KO:K03527
TIGRFAMs:TIGR00216 HOGENOM:HOG000220192 GenomeReviews:AL844501_GR
RefSeq:XP_001350977.1 ProteinModelPortal:Q8I295 PRIDE:Q8I295
EnsemblProtists:PFA0225w:mRNA GeneID:813182 KEGG:pfa:PFA_0225w
ProtClustDB:CLSZ2431638 Uniprot:Q8I295
Length = 535
Score = 159 (61.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 44/146 (30%), Positives = 75/146 (51%)
Query: 34 GFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV 93
GFC GV RA++ E K F + I++ ++I+HN V K+LE+ I +E+ +
Sbjct: 229 GFCKGVSRAIETVEECLKLF-KPPIYVKHKIVHNDIVCKKLEKEGA--IFIED----LND 281
Query: 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153
V G +++ A G + + K + +D TCP V+KV V+ K +Y I+ G
Sbjct: 282 VPDGHILIYSAHGISPQIREIAKKKKLIEIDATCPLVNKVHVYVQMKAKENYDIILIGYK 341
Query: 154 SHEETVATASFAGKYI-IVKNMKEAE 178
+H E + T + A IV+N+ + +
Sbjct: 342 NHVEVIGTYNEAPHCTHIVENVNDVD 367
Score = 71 (30.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/133 (25%), Positives = 58/133 (43%)
Query: 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKM 277
K+ QTT+ ++ +V+K + KF +E + +IC AT RQ A+ K+
Sbjct: 376 KLFYVTQTTL---SMDDCALIVQK-LKNKFPHIETIPS-----GSICYATTNRQTALNKI 426
Query: 278 VEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIG 337
K DL +VV + S+ R P + +H + + + K I
Sbjct: 427 CT-KCDLTIVVGSSSSSNAKKLVYSSQIRNVPA--VLLNTVH----DLDQQILKNVNKIA 479
Query: 338 ITSGASTPDKAVE 350
+TS ASTP++ +
Sbjct: 480 LTSAASTPEQETQ 492
>TIGR_CMR|SPO_3207 [details] [associations]
symbol:SPO_3207 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009240
"isopentenyl diphosphate biosynthetic process" evidence=ISS]
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0051538 GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 OMA:DPRSNNS ProtClustDB:PRK01045
RefSeq:YP_168410.1 GeneID:3195859 KEGG:sil:SPO3207 PATRIC:23379861
Uniprot:Q5LNJ7
Length = 316
Score = 137 (53.3 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 43/150 (28%), Positives = 68/150 (45%)
Query: 29 LAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGK 88
LA GFC GV+RA++I A +++ +++ +EI+HN V L + VEE
Sbjct: 10 LAAPRGFCAGVDRAIKIVEMAIEKWGAP-VYVRHEIVHNKFVVDGLRAKGA--VFVEE-- 64
Query: 89 KQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148
D V+ A G + + VD TCP VSKV E+H + I
Sbjct: 65 --LDECPDDRPVIFSAHGVPKAIPAEAERRQMVYVDATCPLVSKVHIEAERHAEHGLQII 122
Query: 149 IHGKYSHEETVATASFA--GKYIIVKNMKE 176
+ G H ET+ T G+ ++V+ + +
Sbjct: 123 MIGHRGHPETIGTMGQLPEGEVLLVETVAD 152
Score = 81 (33.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 39/142 (27%), Positives = 65/142 (45%)
Query: 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY 275
D ++ QTT+ +T +I + +F + V H IC AT RQ+A+
Sbjct: 160 DPARLAFVTQTTLSVDDTRDI----VAALQARFP-QIVGPHK---EDICYATTNRQEAV- 210
Query: 276 KMVEEKVDLILVVEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN---WLP-K 331
K V K D +LVV G P+ +S + + K + +LV++ + W
Sbjct: 211 KAVAPKSDALLVV------GAPNS-SNSRRLVEVAAKAGCS--YAQLVQRADDIDWRALD 261
Query: 332 GQITIGITSGASTPDKAVEDVL 353
G TI +++GAS P+ V +V+
Sbjct: 262 GIATIAVSAGASAPELLVNEVI 283
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 253 VNEHFISFNTICDATQERQDAMYKMVEEKVDLIL 286
VNE +F D T E + + VE KV +L
Sbjct: 279 VNEVIDAFRARFDVTVEVVETAVEHVEFKVPRVL 312
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 179 (68.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 58/244 (23%), Positives = 116/244 (47%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+++ +A++ GFC+GV+RA++ A +A + ++ +IHNP +RL++ + IP+
Sbjct: 1 MEIIVAQNAGFCFGVKRAIETAQKAAEN--NNPVYSLGPLIHNPQEVERLKKAGI--IPI 56
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGD 144
EE ++ G +++ + G E++ + ++ + D TCP+V K +K
Sbjct: 57 EEIEE-----GNGKTIIIRSHGTTPEKLQEIVDRGYVVEDATCPFVKKAQILAQKLTDEG 111
Query: 145 YTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 203
Y ++ G H E ++G K ++V+N +EA + Y + ++ E F +
Sbjct: 112 YQVVVVGDKKHPEVQGIVGWSGYKALVVENPEEAARLPFYPKIAVIAQTTQKSENFWQVV 171
Query: 204 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263
+ KG +V I + T + E+ ++ VE M+ G + N ++ I
Sbjct: 172 EVIKKKG--GEVRPFNT-ICHATRTRQEESRKLATEVE-VMLVVGGKNSANTKKLA--QI 225
Query: 264 CDAT 267
C AT
Sbjct: 226 CAAT 229
>TIGR_CMR|DET_1344 [details] [associations]
symbol:DET_1344 "hydroxymethylbutenyl pyrophosphate
reductase" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220193 OMA:LVTKVHQ RefSeq:YP_182055.1 STRING:Q3Z6U4
GeneID:3229386 KEGG:det:DET1344 PATRIC:21609717
ProtClustDB:CLSK836989 BioCyc:DETH243164:GJNF-1345-MONOMER
Uniprot:Q3Z6U4
Length = 284
Score = 158 (60.7 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 48/198 (24%), Positives = 92/198 (46%)
Query: 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84
+KV+ A + GFC+GV RA+ I + + + + ++HN V RL M V+ +
Sbjct: 1 MKVECASNIGFCFGVRRAINILEKTAAE--KGGVETLGALVHNQQVLNRLSGMGVRVV-- 56
Query: 85 EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK-HKKG 143
K + ++ G V + + G + L +K +++VDTTCP+V + + ++ H G
Sbjct: 57 ----KNIEDIS-GRTVAISSHGVGPLVLDELKSKGLEVVDTTCPFVKRAQVAAKRFHDAG 111
Query: 144 DYTSIIHGKYSHEETVATASFAG----KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 199
+T +I+G +H E +AG + + + + V YI G L+ ++ F
Sbjct: 112 FFT-VIYGDVNHPEVKGIMGWAGGDGLATLNPQGLVDVPDVSRYI--GVLSQTTQIPTGF 168
Query: 200 LEKFKKAVSKGFDPDVDL 217
K + + D ++
Sbjct: 169 TSFVKNVIDQALVKDAEI 186
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 368 0.00085 117 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 607 (65 KB)
Total size of DFA: 238 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.53u 0.14s 33.67t Elapsed: 00:00:02
Total cpu time: 33.53u 0.14s 33.67t Elapsed: 00:00:02
Start: Mon May 20 20:53:57 2013 End: Mon May 20 20:53:59 2013