Query 017615
Match_columns 368
No_of_seqs 120 out of 1064
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 2E-111 4E-116 849.9 37.3 367 1-367 81-460 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 6E-105 1E-109 792.6 36.6 356 1-362 14-381 (387)
3 PRK12360 4-hydroxy-3-methylbut 100.0 9.5E-93 2.1E-97 683.8 30.8 268 25-359 1-281 (281)
4 TIGR00216 ispH_lytB (E)-4-hydr 100.0 6.2E-92 1.3E-96 677.9 30.2 266 26-359 1-280 (280)
5 PRK01045 ispH 4-hydroxy-3-meth 100.0 9.4E-92 2E-96 681.8 31.5 270 25-362 1-285 (298)
6 COG0761 lytB 4-Hydroxy-3-methy 100.0 4.8E-91 1.1E-95 666.0 29.9 271 24-360 1-285 (294)
7 PF02401 LYTB: LytB protein; 100.0 1.6E-91 3.5E-96 675.9 22.5 267 27-359 1-281 (281)
8 PRK00087 4-hydroxy-3-methylbut 100.0 3.6E-84 7.7E-89 685.5 31.0 265 25-359 1-278 (647)
9 PF02401 LYTB: LytB protein; 95.9 0.13 2.9E-06 50.6 12.5 172 36-242 94-280 (281)
10 PRK01045 ispH 4-hydroxy-3-meth 92.6 1.2 2.6E-05 44.3 10.9 169 36-242 96-281 (298)
11 TIGR00216 ispH_lytB (E)-4-hydr 89.6 2.9 6.3E-05 41.3 10.1 168 36-241 96-278 (280)
12 COG1587 HemD Uroporphyrinogen- 88.0 5.8 0.00013 37.6 10.8 152 5-183 12-193 (248)
13 PRK12360 4-hydroxy-3-methylbut 88.0 4.2 9E-05 40.2 10.0 168 36-241 99-279 (281)
14 PF02602 HEM4: Uroporphyrinoge 85.2 13 0.00029 33.9 11.3 147 7-181 1-184 (231)
15 PRK08057 cobalt-precorrin-6x r 80.1 8.3 0.00018 37.3 8.1 108 67-180 14-123 (248)
16 PF02571 CbiJ: Precorrin-6x re 79.1 9 0.00019 37.0 8.0 107 68-180 13-124 (249)
17 PRK00087 4-hydroxy-3-methylbut 77.7 16 0.00035 39.9 10.3 170 35-242 95-277 (647)
18 COG1023 Gnd Predicted 6-phosph 76.9 28 0.0006 34.4 10.4 108 40-154 10-122 (300)
19 PRK13371 4-hydroxy-3-methylbut 75.0 37 0.0008 35.2 11.4 110 119-242 263-377 (387)
20 TIGR00109 hemH ferrochelatase. 74.7 28 0.00061 34.7 10.3 88 36-143 132-223 (322)
21 PRK05928 hemD uroporphyrinogen 73.2 45 0.00098 30.5 10.7 116 3-123 10-152 (249)
22 PRK11070 ssDNA exonuclease Rec 72.0 21 0.00045 38.7 9.3 107 37-157 53-164 (575)
23 PF14542 Acetyltransf_CG: GCN5 71.6 4.2 9.2E-05 32.2 3.0 34 102-136 34-71 (78)
24 PRK05752 uroporphyrinogen-III 71.4 43 0.00094 31.7 10.4 122 3-129 12-168 (255)
25 PRK09453 phosphodiesterase; Pr 71.1 36 0.00078 30.4 9.3 45 41-85 14-72 (182)
26 cd01537 PBP1_Repressors_Sugar_ 68.5 36 0.00078 30.3 8.8 80 219-306 1-90 (264)
27 PF03446 NAD_binding_2: NAD bi 68.4 19 0.00042 31.7 6.9 97 41-148 12-116 (163)
28 PF06414 Zeta_toxin: Zeta toxi 67.9 9.9 0.00021 34.6 5.0 43 109-151 83-126 (199)
29 PF02896 PEP-utilizers_C: PEP- 65.0 11 0.00024 37.5 5.0 50 33-83 227-276 (293)
30 PRK09189 uroporphyrinogen-III 63.8 35 0.00075 31.9 8.0 122 3-129 9-156 (240)
31 PF02254 TrkA_N: TrkA-N domain 62.5 14 0.0003 30.1 4.5 72 100-179 2-76 (116)
32 KOG2882 p-Nitrophenyl phosphat 60.9 28 0.00061 35.0 6.9 98 42-154 92-226 (306)
33 PRK10444 UMP phosphatase; Prov 60.8 71 0.0015 30.5 9.6 31 49-83 76-106 (248)
34 COG0276 HemH Protoheme ferro-l 60.8 46 0.001 33.7 8.6 92 31-142 125-218 (320)
35 TIGR00715 precor6x_red precorr 58.7 36 0.00077 33.1 7.2 104 68-180 13-121 (256)
36 COG2099 CobK Precorrin-6x redu 58.5 43 0.00094 32.9 7.6 115 58-180 5-123 (257)
37 TIGR02764 spore_ybaN_pdaB poly 58.4 1.4E+02 0.003 26.8 10.8 45 39-83 79-125 (191)
38 COG0041 PurE Phosphoribosylcar 56.9 32 0.00069 31.5 6.0 32 100-153 35-66 (162)
39 PF00762 Ferrochelatase: Ferro 55.0 57 0.0012 32.6 8.1 113 6-143 102-219 (316)
40 PRK12435 ferrochelatase; Provi 53.1 1.2E+02 0.0026 30.3 10.0 86 42-143 124-209 (311)
41 PRK00035 hemH ferrochelatase; 52.5 1.5E+02 0.0033 29.3 10.7 85 41-142 138-223 (333)
42 COG2861 Uncharacterized protei 52.3 29 0.00062 33.9 5.3 70 70-159 143-220 (250)
43 TIGR03190 benz_CoA_bzdN benzoy 48.9 46 0.001 33.8 6.5 109 34-153 201-323 (377)
44 TIGR03127 RuMP_HxlB 6-phospho 48.2 1.4E+02 0.003 26.4 8.9 21 95-115 71-92 (179)
45 PF10087 DUF2325: Uncharacteri 47.6 26 0.00057 28.4 3.8 39 264-303 30-83 (97)
46 PF01726 LexA_DNA_bind: LexA D 47.3 21 0.00046 27.5 2.9 39 102-147 19-57 (65)
47 COG1038 PycA Pyruvate carboxyl 46.3 50 0.0011 37.6 6.6 99 61-181 88-187 (1149)
48 cd00861 ProRS_anticodon_short 46.3 29 0.00062 27.2 3.7 41 110-153 22-64 (94)
49 cd06353 PBP1_BmpA_Med_like Per 45.6 1.1E+02 0.0024 29.1 8.2 79 266-346 42-133 (258)
50 cd01979 Pchlide_reductase_N Pc 45.5 3.5E+02 0.0075 27.6 12.3 105 24-129 118-233 (396)
51 PF00389 2-Hacid_dh: D-isomer 45.3 36 0.00077 28.8 4.4 84 58-148 1-87 (133)
52 COG1494 GlpX Fructose-1,6-bisp 44.8 14 0.00029 37.1 1.9 42 67-112 248-289 (332)
53 PRK10838 spr outer membrane li 44.2 46 0.001 31.1 5.2 74 4-105 65-140 (190)
54 PRK08811 uroporphyrinogen-III 43.5 2.3E+02 0.0049 27.4 10.1 112 6-122 30-164 (266)
55 PF01904 DUF72: Protein of unk 43.1 75 0.0016 30.0 6.6 113 23-151 87-211 (230)
56 cd01536 PBP1_ABC_sugar_binding 41.3 1.9E+02 0.0042 25.8 8.8 80 219-306 1-91 (267)
57 PRK02287 hypothetical protein; 41.2 61 0.0013 30.0 5.4 57 71-140 19-78 (171)
58 cd06312 PBP1_ABC_sugar_binding 41.0 1.6E+02 0.0035 27.1 8.4 80 219-304 1-91 (271)
59 PRK06975 bifunctional uroporph 40.8 1.4E+02 0.003 32.9 9.0 121 4-129 13-177 (656)
60 cd06310 PBP1_ABC_sugar_binding 40.7 1.6E+02 0.0036 26.8 8.4 79 219-304 1-91 (273)
61 cd06286 PBP1_CcpB_like Ligand- 40.7 2.8E+02 0.006 25.1 10.6 104 228-342 9-123 (260)
62 cd06578 HemD Uroporphyrinogen- 40.7 1.2E+02 0.0026 27.3 7.3 65 55-124 78-150 (239)
63 cd05006 SIS_GmhA Phosphoheptos 40.6 2E+02 0.0043 25.5 8.6 75 38-115 18-121 (177)
64 KOG3043 Predicted hydrolase re 40.6 8 0.00017 37.4 -0.4 33 6-46 106-138 (242)
65 TIGR00274 N-acetylmuramic acid 40.2 60 0.0013 32.1 5.6 35 94-128 124-162 (291)
66 cd01391 Periplasmic_Binding_Pr 40.1 1.9E+02 0.0042 25.1 8.4 82 220-306 2-93 (269)
67 PLN02449 ferrochelatase 40.1 2E+02 0.0042 30.9 9.7 37 96-142 275-311 (485)
68 TIGR00423 radical SAM domain p 40.0 2.7E+02 0.0059 27.2 10.2 122 8-157 40-171 (309)
69 PF15498 Dendrin: Nephrin and 39.9 6.2 0.00013 41.5 -1.4 33 99-131 378-410 (657)
70 PLN02821 1-hydroxy-2-methyl-2- 39.6 1.8E+02 0.0038 31.1 9.1 111 118-242 336-451 (460)
71 COG0761 lytB 4-Hydroxy-3-methy 39.4 1.2E+02 0.0026 30.4 7.4 103 108-242 173-283 (294)
72 cd00419 Ferrochelatase_C Ferro 38.9 50 0.0011 28.8 4.4 37 96-143 17-53 (135)
73 TIGR02263 benz_CoA_red_C benzo 37.3 98 0.0021 31.5 6.8 70 13-84 185-264 (380)
74 TIGR02884 spore_pdaA delta-lac 36.9 88 0.0019 29.3 6.0 72 4-83 139-219 (224)
75 PRK10014 DNA-binding transcrip 36.7 3.8E+02 0.0083 25.5 12.2 117 218-344 65-193 (342)
76 cd06320 PBP1_allose_binding Pe 36.6 1.8E+02 0.0038 26.7 7.9 78 220-304 2-91 (275)
77 PRK10877 protein disulfide iso 36.4 38 0.00082 32.2 3.4 32 122-153 114-145 (232)
78 PF12850 Metallophos_2: Calcin 36.4 1.3E+02 0.0029 25.1 6.6 98 43-160 16-125 (156)
79 cd07394 MPP_Vps29 Homo sapiens 36.0 2.5E+02 0.0053 25.4 8.6 85 56-161 31-123 (178)
80 PF13380 CoA_binding_2: CoA bi 35.9 80 0.0017 26.6 5.0 57 57-131 58-114 (116)
81 TIGR01417 PTS_I_fam phosphoeno 34.5 69 0.0015 34.7 5.4 50 33-83 474-523 (565)
82 cd01080 NAD_bind_m-THF_DH_Cycl 34.1 64 0.0014 29.3 4.4 86 43-131 32-121 (168)
83 PRK09484 3-deoxy-D-manno-octul 34.0 1.4E+02 0.003 26.9 6.6 48 107-154 74-122 (183)
84 PLN02424 ketopantoate hydroxym 34.0 1.4E+02 0.0031 30.4 7.2 98 27-131 98-207 (332)
85 cd06308 PBP1_sensor_kinase_lik 33.6 3.7E+02 0.0081 24.5 11.6 78 220-304 2-90 (270)
86 cd07948 DRE_TIM_HCS Saccharomy 33.6 4.5E+02 0.0098 25.4 12.8 123 7-151 25-161 (262)
87 KOG2947 Carbohydrate kinase [C 33.6 61 0.0013 32.1 4.3 64 216-288 129-192 (308)
88 PF13580 SIS_2: SIS domain; PD 33.1 56 0.0012 28.2 3.7 30 94-123 101-134 (138)
89 cd06319 PBP1_ABC_sugar_binding 32.9 3E+02 0.0064 25.1 8.8 77 220-304 2-89 (277)
90 PF13407 Peripla_BP_4: Peripla 32.6 2.8E+02 0.006 25.2 8.5 77 220-304 1-89 (257)
91 PRK13914 invasion associated s 32.0 85 0.0018 33.5 5.5 68 8-104 368-437 (481)
92 cd01917 ACS_2 Acetyl-CoA synth 32.0 71 0.0015 31.9 4.6 39 114-152 114-162 (287)
93 COG4007 Predicted dehydrogenas 31.8 53 0.0011 32.8 3.6 87 37-134 32-126 (340)
94 PRK06559 nicotinate-nucleotide 31.7 1.8E+02 0.0038 29.1 7.3 102 24-130 168-273 (290)
95 COG4821 Uncharacterized protei 31.6 1.5E+02 0.0032 28.7 6.4 36 92-127 100-139 (243)
96 PRK15317 alkyl hydroperoxide r 30.8 3.1E+02 0.0066 28.9 9.4 47 25-75 120-166 (517)
97 COG1832 Predicted CoA-binding 30.4 1.2E+02 0.0025 27.4 5.2 67 56-123 17-101 (140)
98 PRK10537 voltage-gated potassi 30.0 1E+02 0.0022 31.9 5.5 74 97-180 241-317 (393)
99 cd00738 HGTP_anticodon HGTP an 29.9 98 0.0021 23.8 4.3 42 110-154 22-65 (94)
100 PF10096 DUF2334: Uncharacteri 29.9 95 0.0021 29.7 5.0 63 100-163 2-86 (243)
101 TIGR00290 MJ0570_dom MJ0570-re 29.5 1.4E+02 0.003 28.6 6.0 52 102-153 40-94 (223)
102 PRK10669 putative cation:proto 29.2 74 0.0016 33.8 4.6 68 97-172 418-488 (558)
103 PF13986 DUF4224: Domain of un 29.0 54 0.0012 23.8 2.4 26 70-105 20-45 (47)
104 PF12146 Hydrolase_4: Putative 28.9 33 0.00072 27.1 1.5 49 99-166 17-65 (79)
105 TIGR03151 enACPred_II putative 28.8 1E+02 0.0023 30.5 5.3 49 97-150 87-135 (307)
106 TIGR02873 spore_ylxY probable 28.5 1.7E+02 0.0037 28.5 6.6 81 58-150 179-263 (268)
107 TIGR01081 mpl UDP-N-acetylmura 28.4 4.4E+02 0.0096 27.0 10.0 58 61-123 28-88 (448)
108 TIGR03590 PseG pseudaminic aci 28.4 5.2E+02 0.011 24.8 9.9 79 39-121 17-105 (279)
109 PF00532 Peripla_BP_1: Peripla 28.3 5.3E+02 0.011 24.6 11.8 130 219-359 3-145 (279)
110 PF00455 DeoRC: DeoR C termina 27.2 67 0.0015 28.6 3.3 63 95-164 18-82 (161)
111 cd00858 GlyRS_anticodon GlyRS 27.0 1E+02 0.0022 25.9 4.2 55 96-154 26-88 (121)
112 PRK02842 light-independent pro 26.8 7.2E+02 0.016 25.6 11.7 105 24-129 129-243 (427)
113 TIGR02634 xylF D-xylose ABC tr 26.4 2.4E+02 0.0053 26.8 7.3 74 224-305 4-89 (302)
114 PRK06464 phosphoenolpyruvate s 26.2 1.1E+02 0.0023 34.7 5.3 48 35-83 723-771 (795)
115 PRK05562 precorrin-2 dehydroge 26.1 1.8E+02 0.0039 27.8 6.1 29 331-360 132-160 (223)
116 COG3980 spsG Spore coat polysa 26.1 2.5E+02 0.0055 28.4 7.2 102 25-132 1-108 (318)
117 COG0826 Collagenase and relate 25.9 1.3E+02 0.0029 30.6 5.5 74 227-309 45-126 (347)
118 cd06836 PLPDE_III_ODC_DapDC_li 25.6 1.7E+02 0.0037 29.6 6.3 72 66-139 38-113 (379)
119 PRK05301 pyrroloquinoline quin 25.4 6.9E+02 0.015 25.0 11.5 43 98-148 116-158 (378)
120 cd03108 AdSS Adenylosuccinate 25.2 1E+02 0.0022 31.8 4.5 40 106-151 130-169 (363)
121 COG2454 Uncharacterized conser 25.1 3.5E+02 0.0075 26.0 7.6 66 39-104 112-188 (211)
122 cd06281 PBP1_LacI_like_5 Ligan 25.0 5.3E+02 0.011 23.5 11.0 113 220-343 2-126 (269)
123 cd06313 PBP1_ABC_sugar_binding 24.9 2.8E+02 0.0061 25.7 7.2 76 220-304 2-89 (272)
124 TIGR03882 cyclo_dehyd_2 bacter 24.8 2.3E+02 0.0049 26.2 6.4 77 69-163 63-157 (193)
125 PF00919 UPF0004: Uncharacteri 24.7 4E+02 0.0086 22.0 7.9 39 68-115 17-55 (98)
126 cd06299 PBP1_LacI_like_13 Liga 24.7 5.2E+02 0.011 23.3 10.9 126 220-355 2-138 (265)
127 TIGR00854 pts-sorbose PTS syst 24.7 4.5E+02 0.0098 23.4 8.1 72 36-116 58-130 (151)
128 COG0104 PurA Adenylosuccinate 24.5 1E+02 0.0022 32.5 4.3 49 103-151 130-223 (430)
129 cd01299 Met_dep_hydrolase_A Me 24.4 6.3E+02 0.014 24.4 9.8 111 37-151 117-270 (342)
130 PRK03562 glutathione-regulated 24.3 1.1E+02 0.0023 33.4 4.8 67 97-171 401-470 (621)
131 COG1570 XseA Exonuclease VII, 24.3 4.8E+02 0.01 27.7 9.3 27 216-244 134-160 (440)
132 PRK03803 murD UDP-N-acetylmura 24.2 5.6E+02 0.012 26.2 9.8 92 62-157 35-147 (448)
133 PF04273 DUF442: Putative phos 23.8 4.5E+02 0.0097 22.2 8.3 82 57-151 8-93 (110)
134 COG0647 NagD Predicted sugar p 23.3 7.2E+02 0.016 24.4 11.5 106 7-128 30-161 (269)
135 PRK11657 dsbG disulfide isomer 23.3 92 0.002 29.9 3.6 29 122-150 124-153 (251)
136 PRK10329 glutaredoxin-like pro 23.2 3.7E+02 0.0079 21.1 6.5 71 25-116 3-73 (81)
137 TIGR01418 PEP_synth phosphoeno 23.1 1.4E+02 0.0031 33.6 5.5 48 35-83 716-764 (782)
138 COG1648 CysG Siroheme synthase 23.0 1.1E+02 0.0024 28.9 4.0 55 289-358 91-145 (210)
139 PRK11177 phosphoenolpyruvate-p 22.7 1.5E+02 0.0033 32.2 5.5 51 32-83 474-524 (575)
140 PF01380 SIS: SIS domain SIS d 22.7 1.4E+02 0.003 24.4 4.2 42 96-137 53-98 (131)
141 PRK08445 hypothetical protein; 22.6 4.6E+02 0.0099 26.5 8.6 73 8-83 77-159 (348)
142 TIGR03006 pepcterm_polyde poly 22.6 5.2E+02 0.011 25.1 8.8 49 36-84 23-73 (265)
143 PRK04293 adenylosuccinate synt 22.6 1.2E+02 0.0026 30.9 4.4 81 59-151 70-174 (333)
144 KOG0238 3-Methylcrotonyl-CoA c 22.5 2.2E+02 0.0048 31.1 6.4 151 5-181 9-177 (670)
145 TIGR00762 DegV EDD domain prot 22.5 3.3E+02 0.0072 26.2 7.3 43 108-151 43-85 (275)
146 COG4770 Acetyl/propionyl-CoA c 22.4 1.1E+02 0.0024 33.5 4.3 148 5-180 13-180 (645)
147 COG1654 BirA Biotin operon rep 22.4 89 0.0019 25.2 2.8 25 131-155 34-58 (79)
148 cd06311 PBP1_ABC_sugar_binding 22.4 4.6E+02 0.01 23.9 8.1 81 220-304 2-94 (274)
149 TIGR01511 ATPase-IB1_Cu copper 22.2 3.1E+02 0.0067 29.4 7.7 44 109-154 433-476 (562)
150 cd06273 PBP1_GntR_like_1 This 22.2 5.8E+02 0.013 23.0 11.9 77 220-305 2-88 (268)
151 PRK06718 precorrin-2 dehydroge 22.1 2.3E+02 0.0051 26.2 6.0 32 331-363 116-147 (202)
152 TIGR01279 DPOR_bchN light-inde 22.0 8.7E+02 0.019 24.9 13.0 102 25-129 116-231 (407)
153 TIGR01489 DKMTPPase-SF 2,3-dik 21.8 4.1E+02 0.0089 22.8 7.3 18 136-153 153-171 (188)
154 PRK06719 precorrin-2 dehydroge 21.6 2.9E+02 0.0063 24.5 6.3 35 332-367 117-151 (157)
155 COG1139 Uncharacterized conser 21.6 5.7E+02 0.012 27.3 9.1 113 24-145 78-193 (459)
156 cd02985 TRX_CDSP32 TRX family, 21.6 4.3E+02 0.0092 21.1 7.4 68 257-354 20-101 (103)
157 cd01917 ACS_2 Acetyl-CoA synth 21.2 3.5E+02 0.0076 27.1 7.2 59 13-83 115-176 (287)
158 PRK15408 autoinducer 2-binding 21.2 4.8E+02 0.01 25.8 8.3 118 218-345 24-160 (336)
159 COG1329 Transcriptional regula 21.1 54 0.0012 30.2 1.5 14 95-108 6-19 (166)
160 TIGR02764 spore_ybaN_pdaB poly 21.0 5.9E+02 0.013 22.6 11.4 44 107-150 108-158 (191)
161 COG2871 NqrF Na+-transporting 21.0 67 0.0014 32.6 2.2 24 57-80 376-399 (410)
162 TIGR01290 nifB nitrogenase cof 20.8 5.1E+02 0.011 27.2 8.8 107 40-146 63-189 (442)
163 COG1737 RpiR Transcriptional r 20.8 4.9E+02 0.011 25.2 8.2 76 56-132 131-217 (281)
164 COG1307 DegV Uncharacterized p 20.7 3.2E+02 0.0069 26.9 6.9 70 73-151 17-88 (282)
165 PRK15461 NADH-dependent gamma- 20.6 5.9E+02 0.013 24.7 8.7 93 43-147 14-116 (296)
166 TIGR00824 EIIA-man PTS system, 20.6 75 0.0016 26.9 2.2 33 25-62 2-34 (116)
167 PF10087 DUF2325: Uncharacteri 20.5 4.1E+02 0.0088 21.4 6.4 72 68-139 13-95 (97)
168 PRK10653 D-ribose transporter 20.5 7.1E+02 0.015 23.3 9.3 79 217-304 26-116 (295)
169 TIGR00106 uncharacterized prot 20.4 1.2E+02 0.0027 25.2 3.4 56 3-61 18-73 (97)
170 COG2984 ABC-type uncharacteriz 20.3 9.3E+02 0.02 24.6 12.6 71 216-299 158-243 (322)
171 PRK06978 nicotinate-nucleotide 20.1 8.2E+02 0.018 24.5 9.6 98 24-129 177-280 (294)
172 TIGR02144 LysX_arch Lysine bio 20.1 2.8E+02 0.0061 26.0 6.2 59 66-124 11-77 (280)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=1.8e-111 Score=849.87 Aligned_cols=367 Identities=84% Similarity=1.304 Sum_probs=352.5
Q ss_pred CCccc-cchHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc
Q 017615 1 MNQEY-TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV 79 (368)
Q Consensus 1 ~~~~y-~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV 79 (368)
|.++| +|+||+.||++|+.+.||.|+|+||+++||||||+|||++|+++++.+++++||++|||||||+|+++|+++||
T Consensus 81 ~~~~y~~s~li~~~r~~~~~~~~g~m~I~LA~~~GFC~GVeRAV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV 160 (460)
T PLN02821 81 MGVEYSTSDLVKTLKENGNVYTWGDVTVKLAKAYGFCWGVERAVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNV 160 (460)
T ss_pred hhhhhhccHHHHHHHhCCCeEEecceEEEEeCCCCCCccHHHHHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCC
Confidence 56888 99999999999999999999999999999999999999999999887767899999999999999999999999
Q ss_pred EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCccee
Q 017615 80 QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (368)
Q Consensus 80 ~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~ 159 (368)
+++++.++..+++++++|++|||||||+||++++.|+++|++|||||||||+|+|+.|++++++||++||+|+++||||+
T Consensus 161 ~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~ 240 (460)
T PLN02821 161 QFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQIVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETV 240 (460)
T ss_pred EEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCccee
Confidence 99987666667899998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHH
Q 017615 160 ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKL 239 (368)
Q Consensus 160 gi~g~a~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~ 239 (368)
||.||+++++||++++|++++++||.+|++||++++++.|+++|++++|++|||+.+++|+++++||||+.++|++|++.
T Consensus 241 gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~ 320 (460)
T PLN02821 241 ATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLEKFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKL 320 (460)
T ss_pred ecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhhhhcccccccCCcccccccEEEEECCCCcHHHHHHHHHH
Confidence 99999988999999999999999999999999999999999999999999999877788999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCc
Q 017615 240 VEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRI 307 (368)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL 307 (368)
|+++|+++++|++.+.||.+|||||+||++||+|+++|+++++|+|||| |||++.|+||||||+++||
T Consensus 321 l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI 400 (460)
T PLN02821 321 LEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERI 400 (460)
T ss_pred HHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHc
Confidence 9999999999988889999999999999999999999964689999999 9999999999999999999
Q ss_pred CCCCcchhhhccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhhhhhhc
Q 017615 308 GPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQL 367 (368)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~~~~~~ 367 (368)
++.+.|+|++.|+|..++++||+.+..+||||||||||||+|++|+.+|.+++..+++|+
T Consensus 401 ~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lIeeVi~~l~~~~~~~~~~~ 460 (460)
T PLN02821 401 GPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVVEDVLDKVFDIKREEALQL 460 (460)
T ss_pred CcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHHHHHHHHHHHhhccccccC
Confidence 999999999999999999999976789999999999999999999999999988888775
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=6.4e-105 Score=792.60 Aligned_cols=356 Identities=65% Similarity=1.106 Sum_probs=330.1
Q ss_pred CCccccchHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcE
Q 017615 1 MNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQ 80 (368)
Q Consensus 1 ~~~~y~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (368)
+..+|+|+||++||++|+.|.+|+|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~m~I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~ 93 (387)
T PRK13371 14 LETAYQSSLIQSIRENGYVLQFGDVTIKLARAFGFCWGVERAVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVR 93 (387)
T ss_pred HHHHHhHHHHHHHHhCCCeeeeCCeEEEEeCCCCCCccHHHHHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCE
Confidence 35799999999999999999999999999999999999999999999988766567999999999999999999999999
Q ss_pred EecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceee
Q 017615 81 NIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (368)
Q Consensus 81 ~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~g 160 (368)
++++.++.++++++++|++|||||||+||+++++|+++|++|||||||+|+|+|++|++++++||+|||+|+++||||+|
T Consensus 94 ~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~G 173 (387)
T PRK13371 94 FIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRA 173 (387)
T ss_pred EEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceee
Confidence 99864444568899889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcEEEEcChhhHHHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHH
Q 017615 161 TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLV 240 (368)
Q Consensus 161 i~g~a~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l 240 (368)
+.||+++++||++++|++.+++++..+ .+...|+++|..+++.+++|..+++|+++++||||+.++|++|++.|
T Consensus 174 i~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l 247 (387)
T PRK13371 174 TSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLF 247 (387)
T ss_pred eccccCceEEECCHHHHHHHhhhhccc------cchhhhhhhhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHH
Confidence 999998789999999999998887665 57788999999999999987656689999999999999999999999
Q ss_pred HHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcC
Q 017615 241 EKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIG 308 (368)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~ 308 (368)
+++|+.++++.+.+.+++++||||+||++||+|+++||++++|+|||| ++|++.|++|||||+++||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~ 327 (387)
T PRK13371 248 ERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERIL 327 (387)
T ss_pred HHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcC
Confidence 999999988766677999999999999999999999984479999999 99999999999999999999
Q ss_pred CCCcchhhhccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhh
Q 017615 309 PGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 362 (368)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~ 362 (368)
+++.|.|+....+..++++||+.+..+||||||||||+|+|++|+.+|+++++.
T Consensus 328 ~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~l~~~ 381 (387)
T PRK13371 328 SGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVVEDVIEKIFALKED 381 (387)
T ss_pred CccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHHHHHHHHHHHhhcc
Confidence 988999996677779999999546889999999999999999999999987543
No 3
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=9.5e-93 Score=683.85 Aligned_cols=268 Identities=32% Similarity=0.558 Sum_probs=248.5
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
|+|++|+++||||||+|||++|+++++.+++++||+||||||||+|+++|+++||++++. ++++++++|++|||||
T Consensus 1 M~I~lA~~~GFC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirA 76 (281)
T PRK12360 1 MKILIAKNAGFCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRS 76 (281)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeC
Confidence 899999999999999999999999876554578999999999999999999999999932 1468888889999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEcChhhHHHhhhh
Q 017615 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (368)
Q Consensus 105 HGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~~~~e~~~~~~~ 183 (368)
||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 77 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~-- 154 (281)
T PRK12360 77 HGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP-- 154 (281)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999998751
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcc
Q 017615 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI 263 (368)
+ .+++++++||||+.++|++|+++|+++ .++++++|||
T Consensus 155 -----------------------------~---~~kv~~vsQTT~~~~~~~~iv~~l~~~----------~~~~~v~~TI 192 (281)
T PRK12360 155 -----------------------------F---LDKACVVAQTTIIPELWEDILNVIKLK----------SKELVFFNTI 192 (281)
T ss_pred -----------------------------c---ccCEEEEECCCCcHHHHHHHHHHHHHh----------CcccccCCCc
Confidence 1 258999999999999999999999863 2457889999
Q ss_pred cHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC
Q 017615 264 CDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 331 (368)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~ 331 (368)
|+||++||+|+++|| +++|+|||| ++|++.|++|||||+++||++ +|| .
T Consensus 193 C~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-----------------~~~-~ 253 (281)
T PRK12360 193 CSATKKRQESAKELS-KEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-----------------EML-K 253 (281)
T ss_pred chhhhhHHHHHHHHH-HhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999998 799999999 999999999999999999999 999 6
Q ss_pred CCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 332 GQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 332 ~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
++.+||||||||||+|+|++|+.+|+++
T Consensus 254 ~~~~VGitaGASTP~~li~eV~~~l~~~ 281 (281)
T PRK12360 254 DYKIIGITAGASTPDWIIEEVIKKIKNL 281 (281)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999764
No 4
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=6.2e-92 Score=677.90 Aligned_cols=266 Identities=39% Similarity=0.641 Sum_probs=245.3
Q ss_pred EEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCc-EEecCCccccccccccCCCEEEEcC
Q 017615 26 KVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 26 kI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV-~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
+|++|+++||||||+|||++|++++++. +++||+||||||||+|+++|+++|| .+++ +++++++|++|||||
T Consensus 1 ~I~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirA 73 (280)
T TIGR00216 1 DIILAKPRGFCFGVKRAIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRA 73 (280)
T ss_pred CEEEccCCCCCccHHHHHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeC
Confidence 5899999999999999999999988643 5789999999999999999999996 7776 468888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEcChhhHHHhhhh
Q 017615 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (368)
Q Consensus 105 HGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~~~~e~~~~~~~ 183 (368)
||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+
T Consensus 74 HGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l--- 150 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENF--- 150 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhC---
Confidence 99999999999999999999999999999999999999999999999999999999999996 57899999998765
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcc
Q 017615 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI 263 (368)
+. .+++++++||||+.++|++|+++|+++|+. .++.++|||
T Consensus 151 ----------------------------~~---~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~--------~~~~~~nTI 191 (280)
T TIGR00216 151 ----------------------------KV---EDLLGVVSQTTLSQEDTKEIVAELKARVPQ--------KEVPVFNTI 191 (280)
T ss_pred ----------------------------CC---CCcEEEEEcCCCcHHHHHHHHHHHHHhCCC--------cCCCCCCCc
Confidence 11 258999999999999999999999874332 357789999
Q ss_pred cHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC
Q 017615 264 CDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 331 (368)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~ 331 (368)
|+||++||+|+++|| +++|+|||| ++|++.|++|||||+++||++ +|| .
T Consensus 192 C~AT~~RQ~a~~~la-~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~-----------------~~l-~ 252 (280)
T TIGR00216 192 CYATQNRQDAVKELA-PEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE-----------------EWL-K 252 (280)
T ss_pred ccccHHHHHHHHHHH-hhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999998 699999999 999999999999999999999 999 6
Q ss_pred CCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 332 GQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 332 ~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
++.+||||||||||+|+|++|+++|+++
T Consensus 253 ~~~~VGiTAGASTP~~li~eVi~~l~~~ 280 (280)
T TIGR00216 253 GVKVVGITAGASTPDWIIEEVIRKIKEL 280 (280)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999753
No 5
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=9.4e-92 Score=681.75 Aligned_cols=270 Identities=32% Similarity=0.548 Sum_probs=249.2
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
|+|++|+++||||||+|||++|++++.++ +++||+||||||||+|+++|+++||.++++ ++++++|++|||||
T Consensus 1 MkI~lA~~~GFC~GV~rAi~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirA 73 (298)
T PRK01045 1 MKILLANPRGFCAGVDRAIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSA 73 (298)
T ss_pred CEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeC
Confidence 89999999999999999999999987654 478999999999999999999999999974 67888889999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEcChhhHHHhhhh
Q 017615 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (368)
Q Consensus 105 HGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~~~~e~~~~~~~ 183 (368)
||+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 74 HGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~-- 151 (298)
T PRK01045 74 HGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE-- 151 (298)
T ss_pred CCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999998751
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc--cC
Q 017615 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS--FN 261 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~n 261 (368)
. ...++++++|||||+.++|++|+++|+++ + +++++ +|
T Consensus 152 -----------------------------~-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~----~------~~~~v~~~n 191 (298)
T PRK01045 152 -----------------------------V-KDPDKLALVTQTTLSVDDTAEIIAALKER----F------PEIQGPPKD 191 (298)
T ss_pred -----------------------------c-CCCCcEEEEEcCCCcHHHHHHHHHHHHHh----C------cCcccCCCC
Confidence 0 12368999999999999999999999863 2 34566 99
Q ss_pred cccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccc
Q 017615 262 TICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL 329 (368)
Q Consensus 262 TIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l 329 (368)
|||+||++||+|+++|| +++|+|||| ++|++.|++|||||+++||++ +||
T Consensus 192 TIC~aT~~RQ~a~~~La-~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~-----------------~~l 253 (298)
T PRK01045 192 DICYATQNRQEAVKELA-PQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDP-----------------EWF 253 (298)
T ss_pred CcchhhHHHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcH-----------------HHh
Confidence 99999999999999998 699999999 999999999999999999999 999
Q ss_pred cCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhh
Q 017615 330 PKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 362 (368)
Q Consensus 330 ~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~ 362 (368)
.++.+||||||||||+|+|++|+.+|+++.+.
T Consensus 254 -~~~~~VGitaGASTP~~li~eV~~~l~~~~~~ 285 (298)
T PRK01045 254 -KGVKTVGVTAGASAPEWLVQEVIARLKELGAT 285 (298)
T ss_pred -cCCCEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999988543
No 6
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=4.8e-91 Score=666.02 Aligned_cols=271 Identities=35% Similarity=0.583 Sum_probs=252.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr 103 (368)
.|+|+||+|+||||||+|||++|++++++++ +|||++||||||++|+++|+++|+.|++ +++++|+|++||||
T Consensus 1 ~~~I~lA~prGFCaGV~RAI~ive~al~~~g-~pIyv~~eIVHN~~Vv~~L~~~g~~fve------~l~e~p~~~~VIfs 73 (294)
T COG0761 1 MMKILLAKPRGFCAGVDRAIQIVERALEEYG-APIYVRHEIVHNRYVVDRLREKGAIFVE------ELDEVPDGATVIFS 73 (294)
T ss_pred CceEEEecCCccchhHHHHHHHHHHHHHHcC-CCeEEEeccccCHHHHHHHHHcCCEecc------ccccCCCCCEEEEE
Confidence 4899999999999999999999999999884 7899999999999999999999999998 46888999999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecc-cCC-cEEEEcChhhHHHhh
Q 017615 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAG-KYIIVKNMKEAEYVC 181 (368)
Q Consensus 104 AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g-~a~-~~~vv~~~~e~~~~~ 181 (368)
||||||++++.|++||++++|||||+|+|+|+.|++++++||+||++|+++||||+|+.| |++ +.+++++++|+..+.
T Consensus 74 AHGVs~~v~~~a~~r~l~v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~ 153 (294)
T COG0761 74 AHGVSPAVREEAKERGLKVIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK 153 (294)
T ss_pred CCCCCHHHHHHHHHCCCEEEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 555 489999999998751
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccC
Q 017615 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFN 261 (368)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~n 261 (368)
... .+++++++|||||.++|.+|+++|+.+|+.. ++.++|
T Consensus 154 -----------------------------~~~---~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~--------~~~~~~ 193 (294)
T COG0761 154 -----------------------------VQL---PDKLAFVTQTTLSVDDTAEIVAALKERFPKI--------EVPPFN 193 (294)
T ss_pred -----------------------------cCC---cccEEEEeeeecCHHHHHHHHHHHHHhCccc--------cCCccc
Confidence 111 2489999999999999999999999865543 466899
Q ss_pred cccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccc
Q 017615 262 TICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL 329 (368)
Q Consensus 262 TIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l 329 (368)
||||||++||+|+++|| .+||+|||| |+|++.|.++|+|++++||++ +||
T Consensus 194 ~ICyAT~nRQ~Avk~la-~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~-----------------~w~ 255 (294)
T COG0761 194 DICYATQNRQDAVKELA-PEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP-----------------EWL 255 (294)
T ss_pred ccchhhhhHHHHHHHHh-hcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-----------------HHh
Confidence 99999999999999998 799999999 999999999999999999999 999
Q ss_pred cCCCcEEEEeecCCCcHHHHHHHHHHHHhhh
Q 017615 330 PKGQITIGITSGASTPDKAVEDVLKKVFEIK 360 (368)
Q Consensus 330 ~~~~~~VGITAGASTP~~lI~eVi~~l~~~~ 360 (368)
.+..+||||||||||||||++|+++|+++.
T Consensus 256 -~~~~~VGvTAGAStPd~lV~~Vi~~l~~~~ 285 (294)
T COG0761 256 -KGVKTVGVTAGASTPDWLVQEVIAKLRELG 285 (294)
T ss_pred -cCccEEEEecCCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999986
No 7
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=1.6e-91 Score=675.86 Aligned_cols=267 Identities=38% Similarity=0.623 Sum_probs=219.4
Q ss_pred EEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCC
Q 017615 27 VKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG 106 (368)
Q Consensus 27 I~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHG 106 (368)
|++|+++||||||+|||++|++++++++ ++||+||||||||+|+++|+++||.++++ ++++++|++|||||||
T Consensus 1 I~lA~~~GfC~GV~rAi~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHG 73 (281)
T PF02401_consen 1 IILAKPAGFCFGVKRAIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHG 73 (281)
T ss_dssp EEE-TT-SS-HHHHHHHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT-
T ss_pred CEecCCCCcCccHHHHHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCC
Confidence 6899999999999999999999998653 58999999999999999999999999985 5788899999999999
Q ss_pred CCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC--cEEEEcChhhHHHhhhhh
Q 017615 107 AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYI 184 (368)
Q Consensus 107 v~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~--~~~vv~~~~e~~~~~~~~ 184 (368)
+||+++++|+++|+.|||||||+|+|+|++|++++++||+|||+|+++||||+|+.||++ +++++++++|++.+.
T Consensus 74 v~~~~~~~l~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~--- 150 (281)
T PF02401_consen 74 VPPEVYEELKERGLEVIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP--- 150 (281)
T ss_dssp --HHHHHHHHHTTEEEEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG---
T ss_pred CCHHHHHHHHHcCCEEEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC---
Confidence 999999999999999999999999999999999999999999999999999999999997 689999999998751
Q ss_pred cCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCccc
Q 017615 185 LGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC 264 (368)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC 264 (368)
..++++++++|||||+.++|++|+++|+++++.. .+.++||||
T Consensus 151 -----------------------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~~~~~nTIC 193 (281)
T PF02401_consen 151 -----------------------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPEL--------EGPVFNTIC 193 (281)
T ss_dssp -----------------------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCE--------E-SCC-S--
T ss_pred -----------------------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCccc--------cCCCCCCCC
Confidence 1123699999999999999999999998743322 224899999
Q ss_pred HHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccCC
Q 017615 265 DATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 332 (368)
Q Consensus 265 ~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~~ 332 (368)
+||++||+|+++|| ++||+|||| ++|++.|++|||||+++||++ +|| ++
T Consensus 194 ~aT~~RQ~a~~~La-~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~-----------------~~l-~~ 254 (281)
T PF02401_consen 194 YATQNRQEAARELA-KEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDP-----------------EWL-KG 254 (281)
T ss_dssp CHHHHHHHHHHHHH-CCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--H-----------------HHH-TT
T ss_pred HhHHHHHHHHHHHH-hhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCH-----------------hHh-CC
Confidence 99999999999998 799999999 999999999999999999999 999 68
Q ss_pred CcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 333 QITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 333 ~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+++||||||||||+|+|++|+++|+++
T Consensus 255 ~~~VGItaGASTP~~ii~eVi~~l~~~ 281 (281)
T PF02401_consen 255 VKKVGITAGASTPDWIIEEVIDRLEEI 281 (281)
T ss_dssp -SEEEEEE-TTS-HHHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999875
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=3.6e-84 Score=685.53 Aligned_cols=265 Identities=33% Similarity=0.561 Sum_probs=248.3
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
|+|++|+++||||||+|||++|++++.++ +++||+||||||||+|+++|+++||+++++ ++++++|++|||||
T Consensus 1 m~i~~a~~~GfC~GV~rAi~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~a 73 (647)
T PRK00087 1 MEIILAKKAGFCFGVKRAVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRS 73 (647)
T ss_pred CEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeC
Confidence 89999999999999999999999987754 478999999999999999999999999974 68888899999999
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEcChhhHHHhhhh
Q 017615 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDY 183 (368)
Q Consensus 105 HGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~~~~e~~~~~~~ 183 (368)
||+||+++++|+++|++|||||||+|+|+|+.|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 74 HG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~~-- 151 (647)
T PRK00087 74 HGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLP-- 151 (647)
T ss_pred CCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhCC--
Confidence 99999999999999999999999999999999999999999999999999999999999996 578999999987651
Q ss_pred hcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcc
Q 017615 184 ILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI 263 (368)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI 263 (368)
. .+++++++||||+.++|++|+++|++ + .++++++|||
T Consensus 152 -----------------------------~---~~~~~~~~QTT~~~~~~~~~~~~l~~----~------~~~~~~~~ti 189 (647)
T PRK00087 152 -----------------------------F---DKKICVVSQTTEKQENFEKVLKELKK----K------GKEVKVFNTI 189 (647)
T ss_pred -----------------------------C---CCCEEEEEcCCCcHHHHHHHHHHHHH----h------CCCcccCCCc
Confidence 1 25899999999999999999999986 3 2467889999
Q ss_pred cHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC
Q 017615 264 CDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK 331 (368)
Q Consensus 264 C~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~ 331 (368)
|+||++||+|+++|| +++|+|||| ++|++.|++|||||+++||++ +|| .
T Consensus 190 C~at~~Rq~a~~~la-~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~-----------------~~~-~ 250 (647)
T PRK00087 190 CNATEVRQEAAEKLA-KKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE-----------------EWF-K 250 (647)
T ss_pred chhhhhHHHHHHHHH-hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-C
Confidence 999999999999998 699999999 999999999999999999999 999 6
Q ss_pred CCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 332 GQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 332 ~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
++.+||||||||||+|+|++|+.+|+++
T Consensus 251 ~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 251 GVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred CCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999976
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=95.89 E-value=0.13 Score=50.58 Aligned_cols=172 Identities=19% Similarity=0.160 Sum_probs=112.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH--h-cCcEEecCCccccccccccCCCEEEEcCCCCCH---
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE--E-MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--- 109 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~--~-~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~--- 109 (368)
|.=|+++=+.+.+..++ +-.|...|+-=| |+|..-+- . -...++++.++.+.+..-......++.==-.+.
T Consensus 94 CP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~~~~l~~~~~~kv~vvsQTT~~~~~~ 170 (281)
T PF02401_consen 94 CPFVKKIHKIVRKYAKE--GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPEDVEKLPISDPKKVAVVSQTTQSVEKF 170 (281)
T ss_dssp -HHHHHHHHHHHHHHHC--T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHHHHHGGGSSTTCEEEEE-TTS-HHHH
T ss_pred ChhHHHHHHHHHHHHhc--CCEEEEECCCCC-ceEEEecccccCCceEEeCChhhhcccCCCCCCeEEEEEeecccHHHH
Confidence 77788888888887765 357999999666 55554442 1 345666654322222111113456666555565
Q ss_pred -HHHHHHHhcCCcEE----eCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHh
Q 017615 110 -EEMVTLNNKNVQIV----DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (368)
Q Consensus 110 -~~~~~l~~~g~~ii----DaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~ 180 (368)
++.+.|+++.-.+. |+-|+--..=|..+++++++---+|++|.++-.-+.=+..-| .+++.|++++|+..-
T Consensus 171 ~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~~ 250 (281)
T PF02401_consen 171 EEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDPE 250 (281)
T ss_dssp HHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--HH
T ss_pred HHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCHh
Confidence 56777888887776 999999999999999999999999999999999888885544 468999999998531
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
.| . ..++||+.+=+.=+....++++++|++
T Consensus 251 ---------------------~l--------~---~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 251 ---------------------WL--------K---GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp ---------------------HH--------T---T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred ---------------------Hh--------C---CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 11 1 125899999999999999999988864
No 10
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=92.64 E-value=1.2 Score=44.33 Aligned_cols=169 Identities=13% Similarity=0.169 Sum_probs=114.6
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccc--cC-CCEEEEcCCCCCHH
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVV--NK-GDVVVLPAFGAAVE 110 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el--~~-g~~VIIrAHGv~~~ 110 (368)
|.=|+++=..+.+..++ +-.|...|+==| |+|..-+--- ...++++.+ +++.+ +. ....++.==--+.+
T Consensus 96 CP~V~k~~~~v~~~~~~--Gy~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~---e~~~l~~~~~~~v~vvsQTT~~~~ 169 (298)
T PRK01045 96 CPLVTKVHKEVARMSRE--GYEIILIGHKGH-PEVEGTMGQAPGGVYLVESPE---DVAKLEVKDPDKLALVTQTTLSVD 169 (298)
T ss_pred CccchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHH---HHhhcccCCCCcEEEEEcCCCcHH
Confidence 66677777777766664 345777787555 3333322111 133444332 22333 22 23344443333444
Q ss_pred ----HHHHHHhcC--CcE--EeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHH
Q 017615 111 ----EMVTLNNKN--VQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (368)
Q Consensus 111 ----~~~~l~~~g--~~i--iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~ 178 (368)
+.+.|+++. +.+ .|+-|.-...=|..+++++++=--+|++|.++-.-+.=+..-| .+++.|++.+|++
T Consensus 170 ~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~ 249 (298)
T PRK01045 170 DTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEID 249 (298)
T ss_pred HHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCc
Confidence 555666655 777 9999999999999999999999999999999999888775544 3688899999885
Q ss_pred HhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
.- + | . ..++||+.+=+.=+....++++..|+.
T Consensus 250 ~~------------------~---l--------~---~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 250 PE------------------W---F--------K---GVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred HH------------------H---h--------c---CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 21 1 1 1 125899999999999999999998875
No 11
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=89.64 E-value=2.9 Score=41.32 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=110.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHh--cCcEEecCCccccccccccC-CCEEEEcCCCCCH---
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAV--- 109 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~--~GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~--- 109 (368)
|.=|+++=..+.+..++ +-.|...|+==| |+|..-+-. ....++.+.+ +++.++. ....++.==-.+.
T Consensus 96 CP~V~kv~~~v~~~~~~--Gy~iiiiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~~v~vvsQTT~~~~~~ 169 (280)
T TIGR00216 96 CPLVTKVHNAVKKYAKE--GYHVILIGKKNH-PEVIGTRGYAPDKAIVVETLE---DLENFKVEDLLGVVSQTTLSQEDT 169 (280)
T ss_pred CcccHHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccCcCCCEEEECCHH---HHHhCCCCCcEEEEEcCCCcHHHH
Confidence 55666666666665554 235667776444 333222211 1233444332 2333332 2233443333333
Q ss_pred -HHHHHHHhcC----CcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHh
Q 017615 110 -EEMVTLNNKN----VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 180 (368)
Q Consensus 110 -~~~~~l~~~g----~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~ 180 (368)
++.+.|+++. ..+.|+-|.-...=|+.+++++++=--+|++|.++-.-+.=+..-| .+++.|++.+|++.-
T Consensus 170 ~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~~ 249 (280)
T TIGR00216 170 KEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPEE 249 (280)
T ss_pred HHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCHH
Confidence 4455577766 7789999999999999999999999999999999999888775444 368899999988531
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHH
Q 017615 181 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVE 241 (368)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~ 241 (368)
.| . ..++||+.+=+.=+....+++++.|+
T Consensus 250 ---------------------~l--------~---~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 250 ---------------------WL--------K---GVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred ---------------------Hh--------C---CCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 11 1 12589999999999999999988875
No 12
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=88.03 E-value=5.8 Score=37.65 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=90.6
Q ss_pred ccchHHHHHHhcCCcc-eecc--------eEEEEeCCCCCccc---HHHHHHHHHHHHhhCC-----CCceEEecccccC
Q 017615 5 YTSDIIKKLKENGFEY-TWGN--------VKVKLAESYGFCWG---VERAVQIAYEARKQFP-----EEKIWITNEIIHN 67 (368)
Q Consensus 5 y~~~~~~~~~~~~~~~-~~g~--------mkI~lA~~~GFC~G---V~RAI~~a~~~~~~~~-----~~~Vy~lG~iIHN 67 (368)
.-+.+..+|+..|+.. .+=. ++..+..-.+|++= =.+|++...+.+.... +.++|+.|+
T Consensus 12 ~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~---- 87 (248)
T COG1587 12 QAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGE---- 87 (248)
T ss_pred hhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcH----
Confidence 4567788888888632 2222 22222222233331 1555666555554332 368999995
Q ss_pred HHHHHHHHhcCcEEecCCccc------cccccccC-C-CEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCchhHHHH
Q 017615 68 PTVNKRLEEMAVQNIPVEEGK------KQFDVVNK-G-DVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPWVSKVW 134 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~------~~l~el~~-g-~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTCP~V~kv~ 134 (368)
.--+.|++.|+...--.++. ..+....+ | .++++|++|-.+...+.|.++|..+ +++.+|... .+
T Consensus 88 -~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~-~~ 165 (248)
T COG1587 88 -KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLD-EA 165 (248)
T ss_pred -HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCcc-HH
Confidence 67799999998765432211 12222222 2 4578889999999999999999988 444444444 55
Q ss_pred HHHHHHhhCCceEEEEecCCCcceeeecccCCcEEEEcChhhHHHhhhh
Q 017615 135 TSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDY 183 (368)
Q Consensus 135 ~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~~~~ 183 (368)
.....+..+++. ++++.|...++.+..+
T Consensus 166 ~~~~~~~~~~~d---------------------~v~ftS~~~v~~~~~~ 193 (248)
T COG1587 166 TLIELLKLGEVD---------------------AVVFTSSSAVRALLAL 193 (248)
T ss_pred HHHHHHHhCCCC---------------------EEEEeCHHHHHHHHHH
Confidence 555566556554 4556667777766443
No 13
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=88.00 E-value=4.2 Score=40.25 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=109.2
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH--
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE-- 110 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~-- 110 (368)
|.=|+++=..+.+..++ +-.|...|+==| |+|..-+-.- ...++++.+ +++.++. ....++.==-.+.+
T Consensus 99 CP~V~k~~~~v~~~~~~--Gy~iviiG~~~H-pEv~gi~g~~~~~~~vv~~~~---d~~~l~~~~kv~~vsQTT~~~~~~ 172 (281)
T PRK12360 99 CPFVKKIQNIVEEYYNK--GYSIIIVGDKNH-PEVIGINGWCDNSAYIVNSIE---EVENIPFLDKACVVAQTTIIPELW 172 (281)
T ss_pred CccchHHHHHHHHHHhC--CCEEEEEcCCCC-ceeeEeccCcCCCeEEECCHH---HHhhCccccCEEEEECCCCcHHHH
Confidence 66666666666666654 235777776444 3333222111 133444332 2333322 22334433333433
Q ss_pred --HHHHHHhcC--CcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHhhh
Q 017615 111 --EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCD 182 (368)
Q Consensus 111 --~~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~~~ 182 (368)
+.+.|+++. +.+.|+-|.-...=|..+++++++=--+|++|.++-.-+.=+..-| .+++.|++.+|++.
T Consensus 173 ~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~--- 249 (281)
T PRK12360 173 EDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL--- 249 (281)
T ss_pred HHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH---
Confidence 344555544 6669999999999999999999999999999999999888775434 36888999998852
Q ss_pred hhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHH
Q 017615 183 YILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVE 241 (368)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~ 241 (368)
++ | . ..++||+.+=+.=+....++++++|+
T Consensus 250 ---------------~~---~--------~---~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 250 ---------------EM---L--------K---DYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred ---------------HH---h--------C---CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11 1 1 12589999999999999999988875
No 14
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=85.24 E-value=13 Score=33.94 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=86.9
Q ss_pred chHHHHHHhcCCcceec-ceEEEE-----------e-----CCCCCcccHHHHHHHHHHHHh-------hCCCCceEEec
Q 017615 7 SDIIKKLKENGFEYTWG-NVKVKL-----------A-----ESYGFCWGVERAVQIAYEARK-------QFPEEKIWITN 62 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~g-~mkI~l-----------A-----~~~GFC~GV~RAI~~a~~~~~-------~~~~~~Vy~lG 62 (368)
|++.++|++.|+...+= .+++.- . ...++.|==.+|++...+.++ ...+.++|+.|
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 46778888888665553 233333 1 444555555566666444332 11135799988
Q ss_pred ccccCHHHHHHHHhcCcEE--ecC-Cccccc----cc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCch
Q 017615 63 EIIHNPTVNKRLEEMAVQN--IPV-EEGKKQ----FD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (368)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~-~~~~~~----l~-el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTCP~ 129 (368)
+ ..-+.|++.|+.. +.. ....+. +. .+..+.++++|+.+..+...+.|++.|+.| ++. |.
T Consensus 81 ~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~--~~ 153 (231)
T PF02602_consen 81 P-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET--PP 153 (231)
T ss_dssp H-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE--EE
T ss_pred H-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec--cc
Confidence 5 6678999999997 443 111111 12 233345688999999999999999999887 444 33
Q ss_pred hHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCCcEEEEcChhhHHHhh
Q 017615 130 VSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 181 (368)
Q Consensus 130 V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~~ 181 (368)
....-...+.+...++. ++++.|+.-++.+.
T Consensus 154 ~~~~~~~~~~l~~~~~~---------------------~v~ftS~~~~~~~~ 184 (231)
T PF02602_consen 154 EELSPELKEALDRGEID---------------------AVVFTSPSAVRAFL 184 (231)
T ss_dssp HHHHHHHHHHHHHTTTS---------------------EEEESSHHHHHHHH
T ss_pred ccchHHHHHHHHcCCCC---------------------EEEECCHHHHHHHH
Confidence 34444444555455443 45666777776653
No 15
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=80.07 E-value=8.3 Score=37.30 Aligned_cols=108 Identities=14% Similarity=0.204 Sum_probs=65.5
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhC-C
Q 017615 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG-D 144 (368)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~-G 144 (368)
-+++.+.|.++|+.++-.......-.. ..+..|..-..|-..+..+.++++++.. ||||=||=..+.+.+.+.+++ |
T Consensus 14 gr~la~~L~~~g~~v~~Svat~~g~~~-~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ 92 (248)
T PRK08057 14 ARALARALAAAGVDIVLSLAGRTGGPA-DLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALG 92 (248)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCCCcc-cCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhC
Confidence 355667777777765543211100000 1133455555655677888888888775 999999999999999998774 6
Q ss_pred ceEEEEecCCCcceeeecccCCcEEEEcChhhHHHh
Q 017615 145 YTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (368)
Q Consensus 145 y~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~ 180 (368)
-..+=+=.+ +.. ..-.+..+.+.|.+|+..+
T Consensus 93 ipyiR~eR~---~~~--~~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 93 IPYLRLERP---SWL--PQPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred CcEEEEeCC---CcC--CCCCCCEEEECCHHHHHHH
Confidence 555555443 210 0001235677888887654
No 16
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=79.10 E-value=9 Score=37.05 Aligned_cols=107 Identities=14% Similarity=0.156 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCc---EEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhC
Q 017615 68 PTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 68 ~~Vv~~L~~~GV---~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~ 143 (368)
+.+.+.|.++|. .++.+-.+ .....-..+..|.+-..|=..+..+.++++|+.. ||||=||=..+++.+.+.+++
T Consensus 13 r~la~~L~~~g~v~~sv~t~~g~-~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~ 91 (249)
T PF02571_consen 13 RKLAERLAEAGYVIVSVATSYGG-ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRE 91 (249)
T ss_pred HHHHHHHHhcCCEEEEEEhhhhH-hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhh
Confidence 456677888883 44432211 1111111233577888877788889999999876 999999999999999998875
Q ss_pred -CceEEEEecCCCcceeeecccCCcEEEEcChhhHHHh
Q 017615 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (368)
Q Consensus 144 -Gy~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~ 180 (368)
|-.-+=+-.+.=+.. . ..+.+.|.|.+|+...
T Consensus 92 ~~ipylR~eRp~~~~~---~--~~~~~~v~~~~eA~~~ 124 (249)
T PF02571_consen 92 LGIPYLRFERPSWQPE---P--DDNWHYVDSYEEAAEL 124 (249)
T ss_pred cCcceEEEEcCCcccC---C--CCeEEEeCCHHHHHHH
Confidence 555554544321100 0 1235677888887654
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=77.68 E-value=16 Score=39.85 Aligned_cols=170 Identities=18% Similarity=0.144 Sum_probs=114.3
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc--CcEEecCCccccccccccC-CCEEEEcCCCCCHH-
Q 017615 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE- 110 (368)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~- 110 (368)
=|.=|+++=..+.+..++ +-.|...|+==| |+|..-+-.- ...++++.+ +++.++. ....++.==-.+.+
T Consensus 95 TCP~V~k~~~~~~~~~~~--g~~ivi~G~~~H-pEv~g~~g~~~~~~~vv~~~~---~~~~~~~~~~~~~~~QTT~~~~~ 168 (647)
T PRK00087 95 TCPFVKNIQKLAKKYYEE--GYQIVIVGDKNH-PEVIGINGWCNNSAIIVEDGE---EAEKLPFDKKICVVSQTTEKQEN 168 (647)
T ss_pred CCcCchHHHHHHHHHHhC--CCEEEEEeCCCC-CeeeeeccccCCCEEEECCHH---HHhhCCCCCCEEEEEcCCCcHHH
Confidence 377777777777777664 346777787555 3333322111 134444332 2333332 22334443333444
Q ss_pred ---HHHHHHhcC--CcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHhh
Q 017615 111 ---EMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVC 181 (368)
Q Consensus 111 ---~~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~~ 181 (368)
+.+.|+++. +.+.|+-|.-...=|..+++++++=--++++|.++-.-+.=+..-| .+++.|++++|++.-
T Consensus 169 ~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~~- 247 (647)
T PRK00087 169 FEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPEE- 247 (647)
T ss_pred HHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCHH-
Confidence 555666554 6679999999999999999999999999999999999888775444 468899999988530
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 182 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
+ | . ..+.||+.+=+.=+....++++..|+.
T Consensus 248 -----------------~---~--------~---~~~~vgitagaStP~~~i~~v~~~l~~ 277 (647)
T PRK00087 248 -----------------W---F--------K---GVKIIGVTAGASTPDWIIEEVIKKMSE 277 (647)
T ss_pred -----------------H---h--------C---CCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 1 1 1 125799999999999999999988874
No 18
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=76.87 E-value=28 Score=34.43 Aligned_cols=108 Identities=7% Similarity=0.007 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCE--EEEcCCCCCHHHHHHHHh
Q 017615 40 ERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDV--VVLPAFGAAVEEMVTLNN 117 (368)
Q Consensus 40 ~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~--VIIrAHGv~~~~~~~l~~ 117 (368)
|.-..++.+.++. +-.|+.+- +|+.-+++|...|.....+.++ .+..+++..+ |.++|--+++++.+.|..
T Consensus 10 rMG~n~v~rl~~~--ghdvV~yD---~n~~av~~~~~~ga~~a~sl~e--l~~~L~~pr~vWlMvPag~it~~vi~~la~ 82 (300)
T COG1023 10 RMGANLVRRLLDG--GHDVVGYD---VNQTAVEELKDEGATGAASLDE--LVAKLSAPRIVWLMVPAGDITDAVIDDLAP 82 (300)
T ss_pred hhhHHHHHHHHhC--CCeEEEEc---CCHHHHHHHHhcCCccccCHHH--HHHhcCCCcEEEEEccCCCchHHHHHHHHh
Confidence 3446778888874 23577664 8999999999999777665322 2345555444 445544499999888764
Q ss_pred ---cCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCC
Q 017615 118 ---KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (368)
Q Consensus 118 ---~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (368)
.|=.|||.---+-+-.+++.+.+.++|.+-+=+|-.+
T Consensus 83 ~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 83 LLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred hcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 7899999999999999999999999999999888655
No 19
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=74.96 E-value=37 Score=35.24 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=74.5
Q ss_pred CCcEEeCcCchhHHHHHHHHHHhh-CCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHhhhhhcCCCCCCCC
Q 017615 119 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSS 193 (368)
Q Consensus 119 g~~iiDaTCP~V~kv~~~v~~~~~-~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~~~~~~~~~~~~~~ 193 (368)
++.+.|+-|.-...=|+.++++++ +=--+|++|.++-.=+.=+.--| .+++.|++.+|+..- .+|.|-+
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~------~~i~h~~ 336 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSG------NSIEHKP 336 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCc------ccccccc
Confidence 677899999999999999999986 68899999999887776654333 368889999988531 0011110
Q ss_pred ChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 194 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
-..+ ..+. +.-|+. ..++||+.+=+.=+....++++++|+.
T Consensus 337 ~~~~-~~~t-----~~wl~~--~~~~VGITAGASTP~~lI~eVi~~l~~ 377 (387)
T PRK13371 337 LGKE-LVVT-----ENWLPE--GPVTVGITSGASTPDKVVEDVIEKIFA 377 (387)
T ss_pred ccch-hhhh-----hhhhcc--CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0000 0000 000110 125899999999999999999988875
No 20
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=74.65 E-value=28 Score=34.72 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHHHhhCCCC--ceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc--CCCEEEEcCCCCCHHH
Q 017615 36 CWGVERAVQIAYEARKQFPEE--KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAFGAAVEE 111 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~--~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~--~g~~VIIrAHGv~~~~ 111 (368)
|+.+.-+.+.+.+++.+.+.. ++-..-+-==+|..++.|.++--..+ +..+ +...|||+|||+|...
T Consensus 132 ~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~I~~~l---------~~~~~~~~~~llfSaHglP~~~ 202 (322)
T TIGR00109 132 SSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADSIKETL---------ASFPEPDNAVLLFSAHGLPQSY 202 (322)
T ss_pred cccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHHHHHHH---------HhcCCcCCcEEEEeCCCCchhH
Confidence 455666666666666543211 23333333345666555544321111 1121 1237999999999887
Q ss_pred HHHHHhcCCcEEeCcCchhHHHHHHHHHHhhC
Q 017615 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 112 ~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
.++ | .||...++..++.+.+.
T Consensus 203 ~~~----G-------d~Y~~~~~~ta~~l~~~ 223 (322)
T TIGR00109 203 VDE----G-------DPYPAECEATTRLIAEK 223 (322)
T ss_pred hhC----C-------CChHHHHHHHHHHHHHH
Confidence 763 3 47888888888777654
No 21
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=73.23 E-value=45 Score=30.47 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=72.0
Q ss_pred ccccchHHHHHHhcCCcceecc-eEE-------------EEeCCCCCcccHHHHHHHHHHHHh-----hCCCCceEEecc
Q 017615 3 QEYTSDIIKKLKENGFEYTWGN-VKV-------------KLAESYGFCWGVERAVQIAYEARK-----QFPEEKIWITNE 63 (368)
Q Consensus 3 ~~y~~~~~~~~~~~~~~~~~g~-mkI-------------~lA~~~GFC~GV~RAI~~a~~~~~-----~~~~~~Vy~lG~ 63 (368)
+++...+.+.|++.|+....=. +++ .+....++.|==.+|++...+.++ ...+.++|+.|+
T Consensus 10 ~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~ 89 (249)
T PRK05928 10 SPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGE 89 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECH
Confidence 3556788899999986665532 222 233445667766777777766543 122457999996
Q ss_pred cccCHHHHHHHHhcCcEEec--CCcc-c---ccccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEE
Q 017615 64 IIHNPTVNKRLEEMAVQNIP--VEEG-K---KQFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 123 (368)
Q Consensus 64 iIHN~~Vv~~L~~~GV~~v~--~~~~-~---~~l~e--l~~g~~VIIrAHGv~~~~~~~l~~~g~~ii 123 (368)
= .-+.|++.|+...- .... . ..+.. +....++++|+-+-.....+.|+++|..++
T Consensus 90 ~-----Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 90 K-----TALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred H-----HHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 4 55889999987542 1100 0 01111 222345667777777888899999997763
No 22
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=72.01 E-value=21 Score=38.73 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEeccc-----ccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHH
Q 017615 37 WGVERAVQIAYEARKQFPEEKIWITNEI-----IHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE 111 (368)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~~Vy~lG~i-----IHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~ 111 (368)
.+.++|++...+++++ +++|.++|+- -=---..+-|++.|...+.- -+|+ . +---||++++.
T Consensus 53 ~~m~~a~~ri~~ai~~--~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~--------~IP~-R--~~eGYGl~~~~ 119 (575)
T PRK11070 53 SGIEKAVELLYNALRE--GTRIIVVGDFDADGATSTALSVLALRSLGCSNVDY--------LVPN-R--FEDGYGLSPEV 119 (575)
T ss_pred hCHHHHHHHHHHHHHC--CCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEE--------EeCC-C--CcCCCCCCHHH
Confidence 5999999999999986 4689999873 11122456677777632210 0111 0 12248999999
Q ss_pred HHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcc
Q 017615 112 MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (368)
Q Consensus 112 ~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (368)
.+.+.+.|..+| =||=--..-+..++...+.|..|||.-++..|+
T Consensus 120 i~~~~~~~~~Li-ItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~~ 164 (575)
T PRK11070 120 VDQAHARGAQLI-VTVDNGISSHAGVAHAHALGIPVLVTDHHLPGE 164 (575)
T ss_pred HHHHHhcCCCEE-EEEcCCcCCHHHHHHHHHCCCCEEEECCCCCCC
Confidence 999999887664 344445667888888888899999999886554
No 23
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=71.63 E-value=4.2 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=25.7
Q ss_pred EcCCCCCHH----HHHHHHhcCCcEEeCcCchhHHHHHH
Q 017615 102 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWTS 136 (368)
Q Consensus 102 IrAHGv~~~----~~~~l~~~g~~iiDaTCP~V~kv~~~ 136 (368)
+|-+|+... ..+.++++|.+|+ .+||||.+-.++
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~~ 71 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFRR 71 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHHh
Confidence 566788654 5677888999998 999999976643
No 24
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=71.40 E-value=43 Score=31.70 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=73.2
Q ss_pred ccccchHHHHHHhcCCcceec-ceEEEEe-----------CCCCCcccH---HHHHHHHHHHHhhCC----CCceEEecc
Q 017615 3 QEYTSDIIKKLKENGFEYTWG-NVKVKLA-----------ESYGFCWGV---ERAVQIAYEARKQFP----EEKIWITNE 63 (368)
Q Consensus 3 ~~y~~~~~~~~~~~~~~~~~g-~mkI~lA-----------~~~GFC~GV---~RAI~~a~~~~~~~~----~~~Vy~lG~ 63 (368)
+++.+++.++|++.|+....= .++|.-. .-..|.+=| .+||+...+.+.+.. ..++|+.|+
T Consensus 12 ~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aVG~ 91 (255)
T PRK05752 12 AEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSVGA 91 (255)
T ss_pred HHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEECH
Confidence 345678899999998665443 2233211 112333222 666666655554321 247999995
Q ss_pred cccCHHHHHHHHhcCcEEec--CCc---cccc---ccc---ccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcC
Q 017615 64 IIHNPTVNKRLEEMAVQNIP--VEE---GKKQ---FDV---VNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTC 127 (368)
Q Consensus 64 iIHN~~Vv~~L~~~GV~~v~--~~~---~~~~---l~e---l~~g~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTC 127 (368)
..-+.|++.|+.+.- ... ++.. +.. .+...++++|+.+-.+...+.|+++|..| +++.|
T Consensus 92 -----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~ 166 (255)
T PRK05752 92 -----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCL 166 (255)
T ss_pred -----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecC
Confidence 566889999987432 111 1111 111 12234678999999999999999999776 55555
Q ss_pred ch
Q 017615 128 PW 129 (368)
Q Consensus 128 P~ 129 (368)
|.
T Consensus 167 ~~ 168 (255)
T PRK05752 167 PD 168 (255)
T ss_pred CC
Confidence 54
No 25
>PRK09453 phosphodiesterase; Provisional
Probab=71.09 E-value=36 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccC------------HHHHHHHHhcC--cEEecCC
Q 017615 41 RAVQIAYEARKQFPEEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPVE 85 (368)
Q Consensus 41 RAI~~a~~~~~~~~~~~Vy~lG~iIHN------------~~Vv~~L~~~G--V~~v~~~ 85 (368)
.|.+.+.+.+++.+...|+.+|+|++- +.+.+.|++.| +..|..+
T Consensus 14 ~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GN 72 (182)
T PRK09453 14 PATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGN 72 (182)
T ss_pred HHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccC
Confidence 355555555543333579999999962 45788888886 6666654
No 26
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=68.48 E-value=36 Score=30.32 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=51.1
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe----------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV---------- 288 (368)
+++++.+++ ...-+..+..-+++...+ . +-++.++++-... ...++.++++.+..+|++|+.
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~-~-----g~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~ 72 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKA-A-----GYQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAPTIV 72 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHH-c-----CCeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcchhHH
Confidence 477888776 445567777777764333 2 2345566665543 344556666766689999988
Q ss_pred hhhhccCCCeEEeCCCCC
Q 017615 289 EIAEDRGIPSYWIDSEKR 306 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~e 306 (368)
+.+.+.+.|...+.+..+
T Consensus 73 ~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 73 KLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHhhhcCCCEEEeccCCC
Confidence 444567788888866543
No 27
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.35 E-value=19 Score=31.74 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH----
Q 017615 41 RAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN---- 116 (368)
Q Consensus 41 RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~---- 116 (368)
..-.+|...++. +-+|+.+. .++...++|.+.|+...++. .++-.+.-+||.+--=++++.+-+.
T Consensus 12 mG~~~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s~------~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 12 MGSAMARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADSP------AEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp HHHHHHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESSH------HHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhhh------hhHhhcccceEeecccchhhhhhhhhhHH
Confidence 344567777664 34677765 67899999999999988753 3443332366666555555555444
Q ss_pred ----hcCCcEEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 117 ----NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 117 ----~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
..|-.+||.|=-.....++..+++.+.|...|
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 36889999999999999999999999995544
No 28
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=67.92 E-value=9.9 Score=34.64 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhCCceEEEEe
Q 017615 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 109 ~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
...++.+.+++..+ +|+|+..-....+.++.+.+.||+|.|+-
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~ 126 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYY 126 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEE
Confidence 45677777777655 89999999999999999999999998876
No 29
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=65.04 E-value=11 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 33 ~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
..|-..|-|+|+.+-++.++. +++|.+.|++.+||.....|-.+||..++
T Consensus 227 d~~~Pavl~li~~vi~~a~~~-g~~vsvCGe~a~~p~~~~~Ll~lGi~~lS 276 (293)
T PF02896_consen 227 DPLHPAVLRLIKQVIDAAHKA-GKPVSVCGEMASDPEAIPLLLGLGIRSLS 276 (293)
T ss_dssp -TTSHHHHHHHHHHHHHHHHT-T-EEEEESGGGGSHHHHHHHHHHT-SEEE
T ss_pred CcchHHHHHHHHHHHHHHhhc-CcEEEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 345678999999998888875 58999999999999999999999998875
No 30
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=63.76 E-value=35 Score=31.89 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=72.2
Q ss_pred ccccchHHHHHHhcCCcceecc-eEEE---------EeCC-CCCcccHHHHHHHHHHH---HhhCCCCceEEecccccCH
Q 017615 3 QEYTSDIIKKLKENGFEYTWGN-VKVK---------LAES-YGFCWGVERAVQIAYEA---RKQFPEEKIWITNEIIHNP 68 (368)
Q Consensus 3 ~~y~~~~~~~~~~~~~~~~~g~-mkI~---------lA~~-~GFC~GV~RAI~~a~~~---~~~~~~~~Vy~lG~iIHN~ 68 (368)
.++.+.+.++|++.|+....-. +++. +... .+..|==.+||+...+. .+...+.++|+.|+=
T Consensus 9 ~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~naV~~~~~~~~~~~~~~~~~~~aVG~~---- 84 (240)
T PRK09189 9 EPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAEAVRHLAALGERLLPHLALPLFAVGEA---- 84 (240)
T ss_pred CCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEECHHHHHHHHhcchhhHHhcCCeEEEEcHH----
Confidence 3566788899999985554432 2221 1111 12233336777765432 111224579999964
Q ss_pred HHHHHHHhcCcEEecCCcc-ccccc-----cc-cCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCch
Q 017615 69 TVNKRLEEMAVQNIPVEEG-KKQFD-----VV-NKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (368)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~-~~~l~-----el-~~g~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTCP~ 129 (368)
.-+.|++.|+..+-.... .+.|- .. +.+.++++|+-+-.+...+.|+++|+.| +++.||-
T Consensus 85 -Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 85 -TAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred -HHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 457899999874321111 11111 11 2345788999999999999999999765 6666654
No 31
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=62.47 E-value=14 Score=30.13 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCC--cEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEcChhh
Q 017615 100 VVLPAFGAAVEEMVTLNNKNV--QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 176 (368)
Q Consensus 100 VIIrAHGv~~~~~~~l~~~g~--~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~~~~e 176 (368)
||+-.--++..+.+.|++.+. .+||.. +..++++.++|+. ++.|+..++++---.+... +.+++...+|
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 455555567788899999773 446554 6668888899977 6779999999977666543 4566655555
Q ss_pred HHH
Q 017615 177 AEY 179 (368)
Q Consensus 177 ~~~ 179 (368)
..+
T Consensus 74 ~~n 76 (116)
T PF02254_consen 74 EEN 76 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 32
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=60.89 E-value=28 Score=34.97 Aligned_cols=98 Identities=22% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhC-CCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccC-CCEEEEcCCCCCHHH--------
Q 017615 42 AVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEE-------- 111 (368)
Q Consensus 42 AI~~a~~~~~~~-~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~-g~~VIIrAHGv~~~~-------- 111 (368)
|...|.-+.+.. .+++||++|. .-..+.|++.|+..... ..+.... ++.=-+..|+..|++
T Consensus 92 a~~~a~ylk~~~~~~k~Vyvig~----~gi~~eL~~aG~~~~g~-----~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D 162 (306)
T KOG2882|consen 92 AYAIADYLKKRKPFGKKVYVIGE----EGIREELDEAGFEYFGG-----GPDGKDTDGAKSFVLSIGLDPDVGAVVVGYD 162 (306)
T ss_pred HHHHHHHHHHhCcCCCeEEEecc----hhhhHHHHHcCceeecC-----CCCcccccccccchhhcCCCCCCCEEEEecc
Q ss_pred -----------HHHHHhcCCcEE----eCcCc------------hhHHHHHHHHHHhhCCceEEEEecCC
Q 017615 112 -----------MVTLNNKNVQIV----DTTCP------------WVSKVWTSVEKHKKGDYTSIIHGKYS 154 (368)
Q Consensus 112 -----------~~~l~~~g~~ii----DaTCP------------~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (368)
...|++=++..+ |+||| +|..+...+ |.+-+++||++
T Consensus 163 ~hfsy~KL~kA~~yLqnP~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t------~R~P~v~GKP~ 226 (306)
T KOG2882|consen 163 EHFSYPKLMKALNYLQNPGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFAT------GRQPIVLGKPS 226 (306)
T ss_pred cccCHHHHHHHHHHhCCCCcEEEeccCccccCCCCCeeccCCccHHHHHHHHh------cCCCeecCCCC
No 33
>PRK10444 UMP phosphatase; Provisional
Probab=60.82 E-value=71 Score=30.54 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=22.8
Q ss_pred HHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 49 ARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 49 ~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
.+++.+++++|++|+ +...+.|++.|+...+
T Consensus 76 ~L~~~~~~~v~~~g~----~~l~~~l~~~g~~~~~ 106 (248)
T PRK10444 76 FLRRQEGKKAYVIGE----GALIHELYKAGFTITD 106 (248)
T ss_pred HHHhCCCCEEEEEcC----HHHHHHHHHCcCEecC
Confidence 333333457999998 7889999999988553
No 34
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=60.78 E-value=46 Score=33.66 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=54.2
Q ss_pred CCCCCcccHHHHHHHHHHHHhhCCC-CceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc-CCCEEEEcCCCCC
Q 017615 31 ESYGFCWGVERAVQIAYEARKQFPE-EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAA 108 (368)
Q Consensus 31 ~~~GFC~GV~RAI~~a~~~~~~~~~-~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~-~g~~VIIrAHGv~ 108 (368)
-|--=|+-+--+++-+.+++++.+. .++-+..+-=-+|--++.|.+. |.+ .+.+.+ +++.+|++|||+|
T Consensus 125 yPqyS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~----I~~-----~~~~~~~~~~~llfSaHglP 195 (320)
T COG0276 125 YPQYSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADS----IRE-----KLAKHPRDDDVLLFSAHGLP 195 (320)
T ss_pred CcccccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHH----HHH-----HHHhcCCCCeEEEEecCCCc
Confidence 3444567777777777777754322 2455555555556555555433 211 122222 4578999999999
Q ss_pred HHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhh
Q 017615 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (368)
Q Consensus 109 ~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~ 142 (368)
....++ | =||-..++..++..++
T Consensus 196 ~~~~~~----G-------DpY~~q~~~t~~li~e 218 (320)
T COG0276 196 KRYIDE----G-------DPYPQQCQETTRLIAE 218 (320)
T ss_pred hhhhhc----C-------CchHHHHHHHHHHHHH
Confidence 877653 2 2466666666665544
No 35
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=58.70 E-value=36 Score=33.07 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccC--CCEEEEcCCCCCHH-HHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhC
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNK--GDVVVLPAFGAAVE-EMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~--g~~VIIrAHGv~~~-~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~ 143 (368)
..+.+.|.+.|..++-..-....-..+.. +..|+.- +...+ ..+.+++.++.+ ||||=||=..+.+.+.+.+++
T Consensus 13 r~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g--~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~ 90 (256)
T TIGR00715 13 RAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG--ALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKE 90 (256)
T ss_pred HHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC--CCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 34556777777655432111100111111 1234333 33344 447777777665 999999999999999887764
Q ss_pred -CceEEEEecCCCcceeeecccCCcEEEEcChhhHHHh
Q 017615 144 -DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (368)
Q Consensus 144 -Gy~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~ 180 (368)
|-..+=+-.+ +.. -.+..+.+.|.+++..+
T Consensus 91 ~~ipylR~eR~---~~~----~~~~~~~v~~~~ea~~~ 121 (256)
T TIGR00715 91 LGIPYVRFERP---PLA----LGKNIIEVPDIEEATRV 121 (256)
T ss_pred hCCcEEEEECC---CCC----CCCCeEEeCCHHHHHHH
Confidence 6666666443 210 01234677888776543
No 36
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=58.45 E-value=43 Score=32.89 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=71.9
Q ss_pred eEEecccccCHHHHHHHHhcC-cEEecCCcc-ccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcCchhHHHH
Q 017615 58 IWITNEIIHNPTVNKRLEEMA-VQNIPVEEG-KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVW 134 (368)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~G-V~~v~~~~~-~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~ 134 (368)
|+++|=----....++|...+ ..++.+..+ ...+.+. .+- +++.-.|-.....+.+++.++.+ ||||=||-.++-
T Consensus 5 ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~-~~~-~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS 82 (257)
T COG2099 5 ILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQ-IGP-VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARIS 82 (257)
T ss_pred EEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhc-cCC-eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHH
Confidence 455555555555556665555 333332211 1111111 122 77888999999999999999876 999999999998
Q ss_pred HHHHHHhhC-CceEEEEecCCCcceeeecccCCcEEEEcChhhHHHh
Q 017615 135 TSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 180 (368)
Q Consensus 135 ~~v~~~~~~-Gy~IIIiG~~~HpEv~gi~g~a~~~~vv~~~~e~~~~ 180 (368)
+-+-+.+++ |-.-+-+-.+.-... ..+.+-|.|.+|+..+
T Consensus 83 ~Na~~aake~gipy~r~eRP~~~~~------gd~~~~V~d~~ea~~~ 123 (257)
T COG2099 83 QNAARAAKETGIPYLRLERPPWAPN------GDNWIEVADIEEAAEA 123 (257)
T ss_pred HHHHHHHHHhCCcEEEEECCccccC------CCceEEecCHHHHHHH
Confidence 887777764 666555554432221 1245677888887654
No 37
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=58.39 E-value=1.4e+02 Score=26.77 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhCC--CCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 39 VERAVQIAYEARKQFP--EEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 39 V~RAI~~a~~~~~~~~--~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
+++-|..+.+++++.. ..+.|..----.|+.+++.|++.|..++.
T Consensus 79 ~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 79 IKKDILRAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVH 125 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEE
Confidence 4445555555554421 12456555556899999999999999876
No 38
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=56.94 E-value=32 Score=31.51 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=26.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecC
Q 017615 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 100 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
=|++||=.|...++.+ +...++|+.|||-|--
T Consensus 35 ~VvSAHRTPe~m~~ya----------------------~~a~~~g~~viIAgAG 66 (162)
T COG0041 35 RVVSAHRTPEKMFEYA----------------------EEAEERGVKVIIAGAG 66 (162)
T ss_pred EEEeccCCHHHHHHHH----------------------HHHHHCCCeEEEecCc
Confidence 5799999998887766 5578999999999843
No 39
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=55.00 E-value=57 Score=32.57 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=67.6
Q ss_pred cchHHHHHHhcCCcceecceEEEEe--CCCCCcccHHHHHHHHHHHHhhC-CCCceEEecccccCHHHHHHHHhcCcEEe
Q 017615 6 TSDIIKKLKENGFEYTWGNVKVKLA--ESYGFCWGVERAVQIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNI 82 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~mkI~lA--~~~GFC~GV~RAI~~a~~~~~~~-~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v 82 (368)
-.+.++.|++.|++ +|++- -|.-=+..+.-+++.+.+++.+. ...++-...+---+|..++.+.++=-..+
T Consensus 102 i~~~l~~l~~~g~~------~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~l 175 (316)
T PF00762_consen 102 IEDALEELKADGVD------RIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREAL 175 (316)
T ss_dssp HHHHHHHHHHTT-S------EEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC------eEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHHH
Confidence 34555666665442 34333 34444557777888888887663 23468888999999999988876622222
Q ss_pred cCCccccccccc--cCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhC
Q 017615 83 PVEEGKKQFDVV--NKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 83 ~~~~~~~~l~el--~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
+.. ++++.+||+|||+|....+ ++| .||...++..++.+++.
T Consensus 176 ---------~~~~~~~~~~llfSaHglP~~~~~---~~G-------dpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 176 ---------ERFPRGEPDHLLFSAHGLPQRYVE---DKG-------DPYPAQCEETARLIAER 219 (316)
T ss_dssp ---------TTS-HCCCEEEEEEEE--BHHHHT---CCT--------SHHHHHHHHHHHHHHH
T ss_pred ---------HhcCCCCCCEEEEccCCCCccccc---cCC-------CChHHHHHHHHHHHHHH
Confidence 222 2257899999999988762 223 38988888888877664
No 40
>PRK12435 ferrochelatase; Provisional
Probab=53.12 E-value=1.2e+02 Score=30.33 Aligned_cols=86 Identities=8% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc
Q 017615 42 AVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 121 (368)
Q Consensus 42 AI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~ 121 (368)
..+.+.++++..+..++-+..+-=-+|.-++.|.++=-..+.... ..-.++..+||+|||+|....+ +|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~l~~~~-----~~~~~~~~llfSaHslP~~~i~----~G-- 192 (311)
T PRK12435 124 YNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKETFAQIP-----EEEREKAVLIVSAHSLPEKIIA----AG-- 192 (311)
T ss_pred HHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHHHHHcC-----cccccceEEEEecCCCchhHhh----CC--
Confidence 445555554433223566677777788888887654211111100 0001234799999999998775 23
Q ss_pred EEeCcCchhHHHHHHHHHHhhC
Q 017615 122 IVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 122 iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
.||-.-++..++..++.
T Consensus 193 -----DpY~~q~~~t~~~v~~~ 209 (311)
T PRK12435 193 -----DPYPDQLEETADLIAEQ 209 (311)
T ss_pred -----CCHHHHHHHHHHHHHHH
Confidence 59999988888887654
No 41
>PRK00035 hemH ferrochelatase; Reviewed
Probab=52.49 E-value=1.5e+02 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhCC-CCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcC
Q 017615 41 RAVQIAYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKN 119 (368)
Q Consensus 41 RAI~~a~~~~~~~~-~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g 119 (368)
...+.+.+++++.+ ..++.+..++=.+|..++.+.++=-..+.+ ...-.+++.|||.+||+|....+ +|
T Consensus 138 s~~~~i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~------~~~~~~~~~llfs~HG~P~~~~~----~g 207 (333)
T PRK00035 138 SYFEDLARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAK------HGEDPEPDRLLFSAHGLPQRYID----KG 207 (333)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHh------cCcccCCcEEEEecCCCchHHhh----cC
Confidence 33444555555443 235666677777777776665542211211 00000346899999999987652 22
Q ss_pred CcEEeCcCchhHHHHHHHHHHhh
Q 017615 120 VQIVDTTCPWVSKVWTSVEKHKK 142 (368)
Q Consensus 120 ~~iiDaTCP~V~kv~~~v~~~~~ 142 (368)
-||-..+++.++.+.+
T Consensus 208 -------d~Y~~~~~~t~~~l~~ 223 (333)
T PRK00035 208 -------DPYQQQCEETARLLAE 223 (333)
T ss_pred -------CChHHHHHHHHHHHHH
Confidence 3577777776666554
No 42
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.31 E-value=29 Score=33.91 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC--------cCchhHHHHHHHHHHh
Q 017615 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT--------TCPWVSKVWTSVEKHK 141 (368)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa--------TCP~V~kv~~~v~~~~ 141 (368)
+++.|+++|+-|+|+ +. .++-+++..-+++ |+..+++ |=-.|.|=-+.+.+++
T Consensus 143 ~m~~Lk~r~l~flDs------------~T----~a~S~a~~iAk~~---gVp~~~rdvfLD~e~~~~~V~kql~~~~~~A 203 (250)
T COG2861 143 LMEALKERGLYFLDS------------GT----IANSLAGKIAKEI---GVPVIKRDVFLDDEDTEAAVLKQLDAAEKLA 203 (250)
T ss_pred HHHHHHHCCeEEEcc------------cc----cccchhhhhHhhc---CCceeeeeeeecCcCCHHHHHHHHHHHHHHH
Q ss_pred hCCceEEEEecCCCccee
Q 017615 142 KGDYTSIIHGKYSHEETV 159 (368)
Q Consensus 142 ~~Gy~IIIiG~~~HpEv~ 159 (368)
+++-+.|-||++ ||+++
T Consensus 204 rk~G~ai~IGh~-~~~Tv 220 (250)
T COG2861 204 RKNGSAIGIGHP-HKNTV 220 (250)
T ss_pred HhcCceEEecCC-chhHH
No 43
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=48.89 E-value=46 Score=33.81 Aligned_cols=109 Identities=6% Similarity=-0.029 Sum_probs=67.6
Q ss_pred CCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 017615 34 GFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (368)
Q Consensus 34 GFC~GV~RAI~~a~~~~~~--------~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAH 105 (368)
.| .|.+..+++.++.+++ ..+.+|.+.|....|+.+.+.+++.|..+|-+. ...|..-...-=
T Consensus 201 ~~-~~~~~~~~~l~~l~~el~~~~~~~~~~~ril~tG~~~~~~~i~~~iE~~G~~VV~~e--------~c~g~r~~~~~v 271 (377)
T TIGR03190 201 QF-IDKREHNEMLKKVLAALPSRKVERKTGARFMTIGSENDDIAFMAMVESVGATIVIDD--------QCSGTRYFWNAS 271 (377)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCcHHHHHHHHHCCCEEEEEC--------CCcccccccccC
Confidence 45 7999999987665531 112368889999988989999999999998532 112211100000
Q ss_pred CCCHHHHHHHHhcCCcEEeCcCc------hhHHHHHHHHHHhhCCceEEEEecC
Q 017615 106 GAAVEEMVTLNNKNVQIVDTTCP------WVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 106 Gv~~~~~~~l~~~g~~iiDaTCP------~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
-.+.+.++.+.++-+..+-.+|. ....+.+.++++.-+| ||.+..+
T Consensus 272 ~~~~dpl~alA~~yl~~~~C~~~~~p~~~R~~~i~~lv~~~~~DG--VI~~~~k 323 (377)
T TIGR03190 272 KPEDDVIKAIAERYCDRPACPTKDYPVHTRYDHVLGLAKEYNVQG--AIFLQQK 323 (377)
T ss_pred CCCccHHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHHHHHhCCCE--EEEeccc
Confidence 01224567777777766667773 2555666677777776 5555533
No 44
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.15 E-value=1.4e+02 Score=26.44 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=15.7
Q ss_pred cCCCE-EEEcCCCCCHHHHHHH
Q 017615 95 NKGDV-VVLPAFGAAVEEMVTL 115 (368)
Q Consensus 95 ~~g~~-VIIrAHGv~~~~~~~l 115 (368)
.++|. ++|+-.|-++++.+.+
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~ 92 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVA 92 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHH
Confidence 45665 5688889999988765
No 45
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.61 E-value=26 Score=28.42 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=29.1
Q ss_pred cHHHHHHHHH--HHHhhhhcCCEEEEe-------------hhhhccCCCeEEeCC
Q 017615 264 CDATQERQDA--MYKMVEEKVDLILVV-------------EIAEDRGIPSYWIDS 303 (368)
Q Consensus 264 C~AT~~RQ~a--~~eLa~~~vD~miVV-------------eia~~~~~~t~~Ie~ 303 (368)
+.....++.+ +.... +++|++||+ +.|++.+.|.++..+
T Consensus 30 g~~~~~~~~~~~l~~~i-~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKI-KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ecCCCCccchhHHHHhc-CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 4444455555 67666 588999999 899999999888764
No 46
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=47.28 E-value=21 Score=27.53 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=30.1
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceE
Q 017615 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (368)
Q Consensus 102 IrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~I 147 (368)
+..||.||.+.+-++..|+. -...||...+.|.++||--
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCcc
Confidence 34589999999999998874 3588999999999999853
No 47
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=46.26 E-value=50 Score=37.64 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=74.9
Q ss_pred ecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHH
Q 017615 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (368)
Q Consensus 61 lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~ 140 (368)
+|=|--|++...+-.+.|+.||... .+ +++..|=--.-+..+.+.|+.+|=+|=|.+.-+....+-.
T Consensus 88 YGfLSEn~efA~~c~eaGI~FIGP~-----------~e--~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa 154 (1149)
T COG1038 88 YGFLSENPEFARACAEAGITFIGPK-----------PE--VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFA 154 (1149)
T ss_pred cccccCCHHHHHHHHHcCCEEeCCC-----------HH--HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHH
Confidence 6888899999999999999999632 11 1333444447788899999999999999999888776666
Q ss_pred hhCCceEEEEecCCCcceeeecccCCcE-EEEcChhhHHHhh
Q 017615 141 KKGDYTSIIHGKYSHEETVATASFAGKY-IIVKNMKEAEYVC 181 (368)
Q Consensus 141 ~~~Gy~IIIiG~~~HpEv~gi~g~a~~~-~vv~~~~e~~~~~ 181 (368)
.+.||.++| ++..|=.++. -+|.+.+|+...+
T Consensus 155 ~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~~ 187 (1149)
T COG1038 155 EEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEAF 187 (1149)
T ss_pred HhcCCcEEE---------EEccCCCccceeeecCHHHHHHHH
Confidence 678999987 4455444544 6889988886543
No 48
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.25 E-value=29 Score=27.15 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhCCce-EEEEecC
Q 017615 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKY 153 (368)
Q Consensus 110 ~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-IIIiG~~ 153 (368)
++...|++.|+.+ +|-. -.++-+..+...+.|+. ++|+|+.
T Consensus 22 ~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 22 KLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 4456677777777 5554 24666666666777877 6666743
No 49
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=45.63 E-value=1.1e+02 Score=29.09 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhcCCEEEEe---------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchh--h--hhcccccCC
Q 017615 266 ATQERQDAMYKMVEEKVDLILVV---------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL--V--EKENWLPKG 332 (368)
Q Consensus 266 AT~~RQ~a~~eLa~~~vD~miVV---------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~--~--~~~~~l~~~ 332 (368)
.+.+-++++++|+++.+|++|.. ++|++. |++.|+---......|...+.....|. . --..++ .+
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~-p~~~F~~~d~~~~~~Nv~~~~~~~~e~~ylaG~~Aa~~-t~ 119 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEY-PDVKFEHCSGYKTAPNVGSYFARIYEGRYLAGVVAGKM-TK 119 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHC-CCCEEEECCCCCCCCCeeeEechhhHHHHHHHHHHHHh-hc
Confidence 46778889999987779999998 777666 565444311112222322221111111 0 001223 35
Q ss_pred CcEEEEeecCCCcH
Q 017615 333 QITIGITSGASTPD 346 (368)
Q Consensus 333 ~~~VGITAGASTP~ 346 (368)
..+||+.+|...|.
T Consensus 120 t~kVG~I~g~~~~~ 133 (258)
T cd06353 120 TNKVGYVAAFPIPE 133 (258)
T ss_pred CCcEEEEcCcccHH
Confidence 68999999998774
No 50
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=45.50 E-value=3.5e+02 Score=27.56 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=57.1
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHH----hh--CCCCceEEecccc--cCHHHHHHHHhcCcEEecCCcccccccccc
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEAR----KQ--FPEEKIWITNEII--HNPTVNKRLEEMAVQNIPVEEGKKQFDVVN 95 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~----~~--~~~~~Vy~lG~iI--HN~~Vv~~L~~~GV~~v~~~~~~~~l~el~ 95 (368)
+..|+.....||-.....+.+.+.+++ .+ ..+..|-.+|++- -..+...-|++.|+.++.-..+ .++++++
T Consensus 118 ~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d-~~~~~~~ 196 (396)
T cd01979 118 GVPILVASASGLDYTFTQGEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP-RRYTDLP 196 (396)
T ss_pred CCcEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC-CChHHhh
Confidence 356888889998643444444444332 21 1224688888631 1134556678899998632221 1345554
Q ss_pred C--CCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcCch
Q 017615 96 K--GDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (368)
Q Consensus 96 ~--g~~VIIrAHGv~~~~~~~l~~-~g~~iiDaTCP~ 129 (368)
. ...+++-.|......-+.+++ .|+..+...=|+
T Consensus 197 ~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~ 233 (396)
T cd01979 197 VIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPI 233 (396)
T ss_pred ccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCc
Confidence 3 234555445443455666665 466566554444
No 51
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=45.32 E-value=36 Score=28.82 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=48.1
Q ss_pred eEEecccccCHHHHHHHHhcC--cEEecCCccccccccccCCCEEEEcCCC-CCHHHHHHHHhcCCcEEeCcCchhHHHH
Q 017615 58 IWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWVSKVW 134 (368)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~~~~~~~l~el~~g~~VIIrAHG-v~~~~~~~l~~~g~~iiDaTCP~V~kv~ 134 (368)
|+++++| ++..++.|++ | |.+.+..+..+-...+++=|.+|.+... +++++++.+ .++++|=..+-=+-++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~i- 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNI- 74 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB-
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCcc-
Confidence 5667777 8899999999 6 4444422111111122333556666666 899999988 7888886665544433
Q ss_pred HHHHHHhhCCceEE
Q 017615 135 TSVEKHKKGDYTSI 148 (368)
Q Consensus 135 ~~v~~~~~~Gy~II 148 (368)
-...+.+.|-.|.
T Consensus 75 -d~~~a~~~gI~V~ 87 (133)
T PF00389_consen 75 -DLEAAKERGIPVT 87 (133)
T ss_dssp --HHHHHHTTSEEE
T ss_pred -cHHHHhhCeEEEE
Confidence 2334455565443
No 52
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=44.82 E-value=14 Score=37.10 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=33.8
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 017615 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (368)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~ 112 (368)
+++.+.+++++|+ -+ +...+++++-.|+.|||.|-||++-.+
T Consensus 248 ~~~e~~R~~~mGi-d~---~~vl~ledlv~gd~viFaATGvT~G~l 289 (332)
T COG1494 248 GEEERARCKAMGI-DV---NKVLSLEDLVRGDNVIFAATGVTDGDL 289 (332)
T ss_pred cHHHHHHHHHhCC-Ch---hheeeHHHhcCCCceEEEeccCcCcch
Confidence 7889999999999 22 333467888888889999999998654
No 53
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=44.19 E-value=46 Score=31.10 Aligned_cols=74 Identities=20% Similarity=0.407 Sum_probs=41.7
Q ss_pred cccchHHHHHHh-cCCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEE
Q 017615 4 EYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN 81 (368)
Q Consensus 4 ~y~~~~~~~~~~-~~~~~~~g~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~ 81 (368)
+..+.|++.-+. .|.++.||+. .+.|| |.|.-+ .++... .+ |.-|..-......|-.
T Consensus 65 ~~~~~il~~a~~~~G~pY~~GG~-----s~~G~DCSGfv~---~vy~~~--~G----------i~LPr~t~~Q~~~g~~- 123 (190)
T PRK10838 65 DVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSAFVQ---RTFREQ--FG----------LELPRSTYEQQEMGKS- 123 (190)
T ss_pred hHHHHHHHHHHHHCCCCccCCCC-----CCCCeEcHHHHH---HHHHHh--CC----------CCCCCCHHHHHhcCcC-
Confidence 345556654333 5899999984 36799 999855 444321 11 1112222233345532
Q ss_pred ecCCccccccccccCCCEEEEcCC
Q 017615 82 IPVEEGKKQFDVVNKGDVVVLPAF 105 (368)
Q Consensus 82 v~~~~~~~~l~el~~g~~VIIrAH 105 (368)
+. .+++.+||.|+++..
T Consensus 124 V~-------~~~lqpGDLVfF~~~ 140 (190)
T PRK10838 124 VS-------RSKLRTGDLVLFRAG 140 (190)
T ss_pred cc-------cCCCCCCcEEEECCC
Confidence 22 356778998888753
No 54
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=43.45 E-value=2.3e+02 Score=27.43 Aligned_cols=112 Identities=11% Similarity=0.048 Sum_probs=62.2
Q ss_pred cchHHHHHHhcCCcceec-ceEEEE-------------eCCCCCcccHHHHHHHHHHHHh--hCCCCceEEecccccCHH
Q 017615 6 TSDIIKKLKENGFEYTWG-NVKVKL-------------AESYGFCWGVERAVQIAYEARK--QFPEEKIWITNEIIHNPT 69 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g-~mkI~l-------------A~~~GFC~GV~RAI~~a~~~~~--~~~~~~Vy~lG~iIHN~~ 69 (368)
.+.++++|++.|+....= .++|.- ...-..-|==.+||+.....++ ...+.++|+.|+ .
T Consensus 30 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~-----~ 104 (266)
T PRK08811 30 HAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGE-----G 104 (266)
T ss_pred HHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECH-----H
Confidence 467788888887443332 222211 0111122222445555433222 112347899995 5
Q ss_pred HHHHHHhcCcEEec--CCcccccc-----ccccCCCEEEEcCCCCCHHHHHHHHhcCCcE
Q 017615 70 VNKRLEEMAVQNIP--VEEGKKQF-----DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI 122 (368)
Q Consensus 70 Vv~~L~~~GV~~v~--~~~~~~~l-----~el~~g~~VIIrAHGv~~~~~~~l~~~g~~i 122 (368)
--+.|++.|+..+- +....+.| ...+.+.++++|+.|-.+...+.|+++|..|
T Consensus 105 TA~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~V 164 (266)
T PRK08811 105 TARALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGRGLLAPTLQQRGARI 164 (266)
T ss_pred HHHHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCEE
Confidence 66889999986432 21111111 1122233467999999999999999999776
No 55
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=43.14 E-value=75 Score=30.02 Aligned_cols=113 Identities=10% Similarity=0.034 Sum_probs=54.5
Q ss_pred cceEEEEeCCCCCcccHHHHHHHHHHHHhhCC-CCc--eEEecccccCHHHHHHHHhcCcEEecCC-cc---cccccccc
Q 017615 23 GNVKVKLAESYGFCWGVERAVQIAYEARKQFP-EEK--IWITNEIIHNPTVNKRLEEMAVQNIPVE-EG---KKQFDVVN 95 (368)
Q Consensus 23 g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~-~~~--Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~-~~---~~~l~el~ 95 (368)
|.+=+=+..++.++- ..++.....++..+ +-+ |=..++==.++++.+-|++.|+..+-.. .+ ........
T Consensus 87 g~iL~Q~Ppsf~~~~---~~~~~l~~~l~~~~~~~~~avE~R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~ 163 (230)
T PF01904_consen 87 GPILFQFPPSFRFTP---ENLERLDAFLDRLPRGFRYAVEFRHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQT 163 (230)
T ss_dssp EEEEEE--TT--S-H---HHHHHHHHHHHHTT-TS-EEEE--BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------S
T ss_pred eEEEEEcCCCcCCCH---HHHHHHHHHHhhcccccceEEecCCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCccccc
Confidence 333333344444443 33444444444443 112 2234443348999999999999987532 11 11111111
Q ss_pred CCCEEEEcCCCCCHHH-----HHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEe
Q 017615 96 KGDVVVLPAFGAAVEE-----MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 96 ~g~~VIIrAHGv~~~~-----~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
.++.+.+|-||-+... |.. +--..+-++++++.++|..|.++=
T Consensus 164 ~~~~~y~RlhG~~~~~~~~~~Ys~-------------~eL~~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 164 TPDFAYVRLHGRNGEGWYDYRYSD-------------EELEEWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp STTEEEEEE--S-TTTTTB----H-------------HHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCCCeEEeeccCcccccccccCCH-------------HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2478999999998651 111 233566677788888887776654
No 56
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=41.30 E-value=1.9e+02 Score=25.83 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=48.3
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe----------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV---------- 288 (368)
+|+++...+ +..-|.++.+.+++...+. +-++.++++--+. ..-++.+++|...++|.+|+.
T Consensus 1 ~ig~i~p~~-~~~~~~~~~~~~~~~a~~~------g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~ 72 (267)
T cd01536 1 KIGLVVPSL-NNPFWQAMNKGAEAAAKEL------GVELIVLDAQNDV-SKQIQQIEDLIAQGVDGIIISPVDSAALTPA 72 (267)
T ss_pred CEEEEeccc-cCHHHHHHHHHHHHHHHhc------CceEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCCCchhHHHH
Confidence 366766554 4566777877776543321 2345555554333 223466667766689999987
Q ss_pred -hhhhccCCCeEEeCCCCC
Q 017615 289 -EIAEDRGIPSYWIDSEKR 306 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~e 306 (368)
+..++.+.|...+.+..+
T Consensus 73 ~~~l~~~~ip~V~~~~~~~ 91 (267)
T cd01536 73 LKKANAAGIPVVTVDSDID 91 (267)
T ss_pred HHHHHHCCCcEEEecCCCC
Confidence 234456788888877543
No 57
>PRK02287 hypothetical protein; Provisional
Probab=41.22 E-value=61 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.403 Sum_probs=40.5
Q ss_pred HHHHHhcCcEEecCCccccccccccCCCEEEEcCCCC---CHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHH
Q 017615 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA---AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 140 (368)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv---~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~ 140 (368)
..+|.+.|+...-.. ...++.| .||+..+|. +|+..+..++.|+.+||++ |+++.+.
T Consensus 19 g~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS-------W~~~~~~ 78 (171)
T PRK02287 19 ARKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS-------WNEAERV 78 (171)
T ss_pred HHHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC-------HHHHhhh
Confidence 357888887755321 1233444 388888874 8999999999999999998 5555543
No 58
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.05 E-value=1.6e+02 Score=27.07 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=46.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe----------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV---------- 288 (368)
||+++...+.+-.-|..+.+-+++...+. +-++.++++--+......+.+..|....+|.+|+.
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~------g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 74 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDL------GVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPA 74 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHh------CCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 35666654424456777777776543322 23344444433223333455566655789999987
Q ss_pred -hhhhccCCCeEEeCCC
Q 017615 289 -EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~ 304 (368)
+.+++.|.|...+.+.
T Consensus 75 l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 75 IKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHCCCeEEEeCCC
Confidence 3345677889888764
No 59
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=40.77 E-value=1.4e+02 Score=32.93 Aligned_cols=121 Identities=10% Similarity=0.047 Sum_probs=69.8
Q ss_pred cccchHHHHHHhcCCcceec-ceEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C-CCCceEEeccccc
Q 017615 4 EYTSDIIKKLKENGFEYTWG-NVKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F-PEEKIWITNEIIH 66 (368)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~g-~mkI~l--------------A~~~GFC~GV~RAI~~a~~~~~~-~-~~~~Vy~lG~iIH 66 (368)
+..+.+.++|++.|+....- .++|.- ....+..|==.+||+.+.+.+.. . .+-++|+.|+=-+
T Consensus 13 ~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~~~i~AVG~~Ta 92 (656)
T PRK06975 13 GQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHALPVAVVGPGSV 92 (656)
T ss_pred hHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccCCeEEEECHHHH
Confidence 34567888999988544432 233321 12223334335555555444332 1 1347999997544
Q ss_pred CHHHHHHHHhcCcEEecC-----------Cc------cc-cccc--c--ccCCCEEEEcCCCCCHHHHHHHHhcCCcE--
Q 017615 67 NPTVNKRLEEMAVQNIPV-----------EE------GK-KQFD--V--VNKGDVVVLPAFGAAVEEMVTLNNKNVQI-- 122 (368)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~-----------~~------~~-~~l~--e--l~~g~~VIIrAHGv~~~~~~~l~~~g~~i-- 122 (368)
+.|++.|+...-- .+ ++ +.+. . ++...++|+|+.|-.+...+.|+++|..|
T Consensus 93 -----~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~~~L~~~Ga~V~~ 167 (656)
T PRK06975 93 -----AALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLAERLREAGAEVEL 167 (656)
T ss_pred -----HHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHHHHHHHCCCEEEE
Confidence 7899999864311 00 01 0111 1 22234678999999999999999999877
Q ss_pred ---EeCcCch
Q 017615 123 ---VDTTCPW 129 (368)
Q Consensus 123 ---iDaTCP~ 129 (368)
|+.++|.
T Consensus 168 v~vY~~~~~~ 177 (656)
T PRK06975 168 VEAYRRVVPE 177 (656)
T ss_pred EeEEEeeCCC
Confidence 4545553
No 60
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.74 E-value=1.6e+02 Score=26.82 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=46.9
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe---------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV--------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV--------- 288 (368)
||+++.. +++-.-|..+...+.+...+. + -++.+.++-......+|.+ +..|....+|.+|+.
T Consensus 1 ~Igvi~~-~~~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~ 73 (273)
T cd06310 1 KIALVPK-GTTSDFWQAVKAGAEAAAKEL-G-----VKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVP 73 (273)
T ss_pred CeEEEec-CCCcHHHHHHHHHHHHHHHHc-C-----CEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHH
Confidence 5777775 466666778877776543322 2 2343333211234444444 555555789999998
Q ss_pred --hhhhccCCCeEEeCCC
Q 017615 289 --EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~ 304 (368)
+.+++.+.|...+++.
T Consensus 74 ~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 74 PLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHCCCCEEEecCC
Confidence 2334567899998764
No 61
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=40.70 E-value=2.8e+02 Score=25.08 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe---------hhhhccCCC
Q 017615 228 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV---------EIAEDRGIP 297 (368)
Q Consensus 228 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV---------eia~~~~~~ 297 (368)
++-.-|..+.+-+++...+. +.++.++++ .-..++|.+ ...|.+..+|.+|+. +.+++.+ |
T Consensus 9 ~~~~~~~~i~~gi~~~~~~~------g~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-p 79 (260)
T cd06286 9 INHPYFSQLVDGIEKAALKH------GYKVVLLQT--NYDKEKELEYLELLKTKQVDGLILCSRENDWEVIEPYTKYG-P 79 (260)
T ss_pred CCCchHHHHHHHHHHHHHHc------CCEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHhcCC-C
Confidence 34445666666666533322 233444433 334455543 444555679999997 2333455 8
Q ss_pred eEEeCCCCCcCCCCcchhhh-ccchhhhhcccccCCCcEEEEeecC
Q 017615 298 SYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGA 342 (368)
Q Consensus 298 t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~~l~~~~~~VGITAGA 342 (368)
..++.+..+ .....+...- ..+.. .....+..|.++||+.+|.
T Consensus 80 vv~~~~~~~-~~~~~v~~d~~~~~~~-~~~~l~~~g~~~i~~i~~~ 123 (260)
T cd06286 80 IVLCEEYDS-KNISSVYIDHYEAFYE-ALKYLIQKGYRKIAYCIGR 123 (260)
T ss_pred EEEEecccC-CCCCEEEECChHHHHH-HHHHHHHCCCceEEEEcCC
Confidence 888886644 1101111000 11111 1111222478999998875
No 62
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=40.69 E-value=1.2e+02 Score=27.28 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=40.5
Q ss_pred CCceEEecccccCHHHHHHHHhcCcEEecCCccc--c----cccc--ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 017615 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGK--K----QFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (368)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~--~----~l~e--l~~g~~VIIrAHGv~~~~~~~l~~~g~~iiD 124 (368)
+.++|+.|+= .-+.|++.|+...-..+.. + .+.. .....++++|+-+......+.|++.|..++-
T Consensus 78 ~~~~~avG~~-----Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~ 150 (239)
T cd06578 78 GLKIAAVGPK-----TAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDE 150 (239)
T ss_pred CCEEEEECHH-----HHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEE
Confidence 4578888764 5578999998776421110 0 0111 2233445666666668899999999987753
No 63
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.59 E-value=2e+02 Score=25.53 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH----------hcCcEEecCCcccc-------cc---------
Q 017615 38 GVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE----------EMAVQNIPVEEGKK-------QF--------- 91 (368)
Q Consensus 38 GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~----------~~GV~~v~~~~~~~-------~l--------- 91 (368)
.+++|+++..+++.+ .++||++|.= ++-.+-..|. +.|+.+.--.++.. +.
T Consensus 18 ~i~~a~~~i~~~i~~--~~~I~i~G~G-~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
T cd05006 18 AIEQAAQLLAEALLN--GGKILICGNG-GSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHH
Confidence 356666666666553 3568888865 5555543322 12444432110000 00
Q ss_pred --ccccCCCE-EEEcCCCCCHHHHHHH
Q 017615 92 --DVVNKGDV-VVLPAFGAAVEEMVTL 115 (368)
Q Consensus 92 --~el~~g~~-VIIrAHGv~~~~~~~l 115 (368)
..+.++|. ++|+.-|-++++.+.+
T Consensus 95 ~~~~~~~~Dv~I~iS~SG~t~~~i~~~ 121 (177)
T cd05006 95 VEALGQPGDVLIGISTSGNSPNVLKAL 121 (177)
T ss_pred HHHhCCCCCEEEEEeCCCCCHHHHHHH
Confidence 12456776 4688889999887665
No 64
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=40.59 E-value=8 Score=37.43 Aligned_cols=33 Identities=33% Similarity=0.709 Sum_probs=24.7
Q ss_pred cchHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHH
Q 017615 6 TSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIA 46 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a 46 (368)
.+.+++.||+.|-....|. .|||||-+++|+.-
T Consensus 106 i~~v~k~lk~~g~~kkIGv--------~GfCwGak~vv~~~ 138 (242)
T KOG3043|consen 106 ITAVVKWLKNHGDSKKIGV--------VGFCWGAKVVVTLS 138 (242)
T ss_pred HHHHHHHHHHcCCcceeeE--------EEEeecceEEEEee
Confidence 3567888887776665554 59999999988764
No 65
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.21 E-value=60 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=24.6
Q ss_pred ccCCCEE-EEcCCCCCHHHHH---HHHhcCCcEEeCcCc
Q 017615 94 VNKGDVV-VLPAFGAAVEEMV---TLNNKNVQIVDTTCP 128 (368)
Q Consensus 94 l~~g~~V-IIrAHGv~~~~~~---~l~~~g~~iiDaTCP 128 (368)
+.++|.| +|+.-|-+|.+.. .++++|..+|=-||.
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~ 162 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACN 162 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 4456764 6999999998754 556677777766663
No 66
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=40.12 E-value=1.9e+02 Score=25.10 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=49.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe----------h
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV----------E 289 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV----------e 289 (368)
|+++.-.+.....+..+.+.++..+.+. + ..-++.++++-|.... -.+.+.+++...+|++|.. +
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~ 76 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPER-ALEALRDLIQQGVDGIIGPPSSSSALAVVE 76 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHHH-HHHHHHHHHHcCCCEEEecCCCHHHHHHHH
Confidence 4444433313445666666666543331 0 2345778888777633 3444555665679999887 5
Q ss_pred hhhccCCCeEEeCCCCC
Q 017615 290 IAEDRGIPSYWIDSEKR 306 (368)
Q Consensus 290 ia~~~~~~t~~Ie~~~e 306 (368)
.+++.+.|...+....+
T Consensus 77 ~~~~~~ip~v~~~~~~~ 93 (269)
T cd01391 77 LAAAAGIPVVSLDATAP 93 (269)
T ss_pred HHHHcCCcEEEecCCCC
Confidence 55677889888876654
No 67
>PLN02449 ferrochelatase
Probab=40.10 E-value=2e+02 Score=30.90 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhh
Q 017615 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (368)
Q Consensus 96 ~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~ 142 (368)
++..++|+|||+|....+ ++| .||-..+...++...+
T Consensus 275 ~~~~LlFSAHGlP~~~v~---~~G-------DpY~~q~~~ta~lI~~ 311 (485)
T PLN02449 275 EEVHIFFSAHGVPVSYVE---EAG-------DPYKAQMEECVDLIME 311 (485)
T ss_pred CCcEEEEecCCChhhhhh---hcC-------CChHHHHHHHHHHHHH
Confidence 356899999999988764 223 4787777766666554
No 68
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=39.99 E-value=2.7e+02 Score=27.22 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=63.8
Q ss_pred hHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceE--Eeccccc--------CHHHHHHHHhc
Q 017615 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIW--ITNEIIH--------NPTVNKRLEEM 77 (368)
Q Consensus 8 ~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy--~lG~iIH--------N~~Vv~~L~~~ 77 (368)
+|++.++.. ...|.-+|.+.....+-...++..++++...+..++-.+. +-+++.| .++++++|++.
T Consensus 40 eI~~~~~~~---~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeA 116 (309)
T TIGR00423 40 EILEKVKEA---VAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKA 116 (309)
T ss_pred HHHHHHHHH---HHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 344545432 2235566777654556567777777777766654322232 2233432 47788888888
Q ss_pred CcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcc
Q 017615 78 AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (368)
Q Consensus 78 GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (368)
|+..+... .+--.++++++.+-.++ |+. ....+.++...+-|+.+.-.+=-+|||
T Consensus 117 Gl~~i~~~-----------------g~E~l~~~~~~~i~~~~-------~t~-~~~l~~i~~a~~~Gi~~~s~~iiG~~E 171 (309)
T TIGR00423 117 GLDSMPGT-----------------GAEILDDSVRRKICPNK-------LSS-DEWLEVIKTAHRLGIPTTATMMFGHVE 171 (309)
T ss_pred CCCcCCCC-----------------cchhcCHHHHHhhCCCC-------CCH-HHHHHHHHHHHHcCCCceeeEEecCCC
Confidence 87655210 01112344444442221 222 232355666667788776555444665
No 69
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=39.92 E-value=6.2 Score=41.53 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhH
Q 017615 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (368)
Q Consensus 99 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~ 131 (368)
..-=|||-++..-.--+...|+.||||||-...
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVVIr 410 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVVIR 410 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEEEe
Confidence 456799999988888888899999999996543
No 70
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=39.57 E-value=1.8e+02 Score=31.06 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=79.0
Q ss_pred cCCcEEeCcCchhHHHHHHHHHHh-hCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHHhhhhhcCCCCCCC
Q 017615 118 KNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGS 192 (368)
Q Consensus 118 ~g~~iiDaTCP~V~kv~~~v~~~~-~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~~~~~~~~~~~~~~ 192 (368)
..+.+.|+-|.-...=|..+.+++ ++=--+|+||.++-.=+.=+.--| .+++.|++++|+..- ..|....+.|+
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~-~~i~h~~~~~e 414 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPG-NTIAHKLNHGE 414 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcc-cccccccccch
Confidence 456778999999999999999996 678899999988876665553333 357889999888531 23333333444
Q ss_pred CChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 193 SSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
....++++ |. ...+|||.+=+.=+....++++..|.+
T Consensus 415 ~~~~~~wl------------~~-~~~~VGITAGASTPd~lIeeVi~~l~~ 451 (460)
T PLN02821 415 LVEKENWL------------PE-GPVTIGVTSGASTPDKVVEDVLDKVFD 451 (460)
T ss_pred hhhhHHHh------------cc-CCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 33333443 11 125899999999999999999988865
No 71
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=39.36 E-value=1.2e+02 Score=30.45 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=79.0
Q ss_pred CHHHHHHHHhcCCc----EEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHH
Q 017615 108 AVEEMVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (368)
Q Consensus 108 ~~~~~~~l~~~g~~----iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~ 179 (368)
+.++.+.|+++... .-|.-|.=-.+=|+.++.++++---+|++|.++--=..=+...+ ..++.|.+++|++.
T Consensus 173 t~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~ 252 (294)
T COG0761 173 TAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP 252 (294)
T ss_pred HHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH
Confidence 45677788887763 36777888899999999999999999999999876555553333 35889999998853
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
+-|+ ....+|+.+=..-+..-.++++++|+.
T Consensus 253 ---------------------~w~~-----------~~~~VGvTAGAStPd~lV~~Vi~~l~~ 283 (294)
T COG0761 253 ---------------------EWLK-----------GVKTVGVTAGASTPDWLVQEVIAKLRE 283 (294)
T ss_pred ---------------------HHhc-----------CccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1111 125799999999999999999988875
No 72
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.87 E-value=50 Score=28.80 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=27.6
Q ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhC
Q 017615 96 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 96 ~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
+++.+||+|||+|....+ +| -||..-+...++..++.
T Consensus 17 ~~~~llfsaHgiP~~~~~----~g-------d~Y~~~~~~~~~~v~~~ 53 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK----KG-------DPYPDQCEETARLVAER 53 (135)
T ss_pred CCCEEEEEcCCCHHHHhh----CC-------CCHHHHHHHHHHHHHHH
Confidence 356799999999987665 22 47888888887777653
No 73
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=37.27 E-value=98 Score=31.54 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=48.2
Q ss_pred HHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhh--------CCCCceEEecccccCH--HHHHHHHhcCcEEe
Q 017615 13 LKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQ--------FPEEKIWITNEIIHNP--TVNKRLEEMAVQNI 82 (368)
Q Consensus 13 ~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~--------~~~~~Vy~lG~iIHN~--~Vv~~L~~~GV~~v 82 (368)
.+..+.++..-.|- +--..+|+++....+++.++.+++ ..+.+|+..|+..=++ .+++.+++.|..+|
T Consensus 185 ~~~~p~pitg~e~~--~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV 262 (380)
T TIGR02263 185 RADEPWKVPSADLY--LLLRAGLVIPVEEHNQMLADYLAAARKQEAPIKDNCRVIICGMFCEQPPLNLIKSIELSGCYIV 262 (380)
T ss_pred HhhCCCCCCHHHHH--HHHHhhccCCHHHHHHHHHHHHHHHHhccccCCCCCEEEEECcCCCCchHHHHHHHHHCCCEEE
Confidence 33445666632333 334568999999999887665531 1135899999776666 88899999999998
Q ss_pred cC
Q 017615 83 PV 84 (368)
Q Consensus 83 ~~ 84 (368)
-+
T Consensus 263 ~d 264 (380)
T TIGR02263 263 DD 264 (380)
T ss_pred Ee
Confidence 53
No 74
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=36.92 E-value=88 Score=29.27 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=46.4
Q ss_pred cccchHHHHHHhcCCcceecceEEEEeCCCCCc----ccHHHHHHHHHHHHhhCCCCceEEecccc-----cCHHHHHHH
Q 017615 4 EYTSDIIKKLKENGFEYTWGNVKVKLAESYGFC----WGVERAVQIAYEARKQFPEEKIWITNEII-----HNPTVNKRL 74 (368)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC----~GV~RAI~~a~~~~~~~~~~~Vy~lG~iI-----HN~~Vv~~L 74 (368)
.|...+.+.+++.|+....-.+. +..|. .|...+++.+.+.+. .+.|.++++.- .-|.+++.|
T Consensus 139 ~~~~~~~~~l~~~Gy~~v~w~v~-----~~Dw~~~~~~~~~~~~~~v~~~~~---~g~IiLlHd~~~~t~~aL~~ii~~l 210 (224)
T TIGR02884 139 VFSERTLAYTKELGYYTVFWSLA-----FKDWKVDEQPGWQYAYKQIMKKIH---PGAILLLHAVSKDNAEALDKIIKDL 210 (224)
T ss_pred CcCHHHHHHHHHcCCcEEecccc-----CcccCCCCCCCHHHHHHHHHhcCC---CCcEEEEECCCCCHHHHHHHHHHHH
Confidence 46677888889988876543321 22222 245555554443332 35799998842 346788999
Q ss_pred HhcCcEEec
Q 017615 75 EEMAVQNIP 83 (368)
Q Consensus 75 ~~~GV~~v~ 83 (368)
+++|..|+.
T Consensus 211 k~~Gy~fvt 219 (224)
T TIGR02884 211 KEQGYTFKS 219 (224)
T ss_pred HHCCCEEEE
Confidence 999999984
No 75
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=36.71 E-value=3.8e+02 Score=25.54 Aligned_cols=117 Identities=15% Similarity=0.284 Sum_probs=59.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV-------- 288 (368)
..++++... ++-.-|..+.+-+.+...+. + ..+.+.+ |....++|.. +..|....+|.+|+.
T Consensus 65 ~~Igvv~~~-~~~~~~~~i~~gi~~~a~~~-g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 135 (342)
T PRK10014 65 GVIGLIVRD-LSAPFYAELTAGLTEALEAQ-G-----RMVFLLQ--GGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDD 135 (342)
T ss_pred CEEEEEeCC-CccchHHHHHHHHHHHHHHc-C-----CEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHH
Confidence 468888754 44455777776666532222 1 1222222 2333445443 445555689999998
Q ss_pred --hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccccCCCcEEEEeecCCC
Q 017615 289 --EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWLPKGQITIGITSGAST 344 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l~~~~~~VGITAGAST 344 (368)
+.+++.+.|..+++...+...-..+.-- ...+... ....+..|.++||+.+|..+
T Consensus 136 ~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a-~~~L~~~G~~~I~~i~g~~~ 193 (342)
T PRK10014 136 LREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLL-TEHLIRNGHQRIAWLGGQSS 193 (342)
T ss_pred HHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHH-HHHHHHCCCCEEEEEcCCcc
Confidence 4455678899999764332210011000 0000110 01112247889999887544
No 76
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=36.58 E-value=1.8e+02 Score=26.70 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=43.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHH-HHHHHHhhhhcCCEEEEe----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQER-QDAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~R-Q~a~~eLa~~~vD~miVV---------- 288 (368)
++++. ..++-.-|..+.+-+++...+. + -++.+..+-....... ++.++.|....+|.+|+.
T Consensus 2 igvi~-~~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 74 (275)
T cd06320 2 YGVVL-KTLSNEFWRSLKEGYENEAKKL-G-----VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPA 74 (275)
T ss_pred eeEEE-ecCCCHHHHHHHHHHHHHHHHh-C-----CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHH
Confidence 44444 2344556777777776533322 2 2333332223333333 355666665689999887
Q ss_pred -hhhhccCCCeEEeCCC
Q 017615 289 -EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~ 304 (368)
+.+++.+.|...+.+.
T Consensus 75 ~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 75 VERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHCCCeEEEECCC
Confidence 4445678898888764
No 77
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=36.40 E-value=38 Score=32.21 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=28.2
Q ss_pred EEeCcCchhHHHHHHHHHHhhCCceEEEEecC
Q 017615 122 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 122 iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
..|-.|||=+|.|+.++++.+.|++|.++.-+
T Consensus 114 FtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P 145 (232)
T PRK10877 114 FTDITCGYCHKLHEQMKDYNALGITVRYLAFP 145 (232)
T ss_pred EECCCChHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 48999999999999999999999999887433
No 78
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=36.36 E-value=1.3e+02 Score=25.07 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCcccccccc------c------cCCCEEEEcCCCCCHH
Q 017615 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV------V------NKGDVVVLPAFGAAVE 110 (368)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~e------l------~~g~~VIIrAHGv~~~ 110 (368)
++.+.+.+++ ..-|+.+|+|+....+++.|++..+.++..+-+...+.+ + .-+..-++=.||-+-.
T Consensus 16 ~~~~~~~~~~--~d~vi~~GDi~~~~~~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~~~ 93 (156)
T PF12850_consen 16 LEAVLEYINE--PDFVIILGDIFDPEEVLELLRDIPVYVVRGNHDNWAFPNENDEEYLLDALRLTIDGFKILLSHGHPYD 93 (156)
T ss_dssp HHHHHHHHTT--ESEEEEES-SCSHHHHHHHHHHHEEEEE--CCHSTHHHSEECTCSSHSEEEEEETTEEEEEESSTSSS
T ss_pred HHHHHHHhcC--CCEEEECCCchhHHHHHHHHhcCCEEEEeCCcccccchhhhhccccccceeeeecCCeEEEECCCCcc
Confidence 4444444432 356999999999999999998888888875422100000 0 0022334445553322
Q ss_pred HHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceee
Q 017615 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVA 160 (368)
Q Consensus 111 ~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~g 160 (368)
+. .......+.+...++..++.|+.-.|.+.-
T Consensus 94 -----------------~~-~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 125 (156)
T PF12850_consen 94 -----------------VQ-WDPAELREILSRENVDLVLHGHTHRPQVFK 125 (156)
T ss_dssp -----------------ST-TTHHHHHHHHHHTTSSEEEESSSSSEEEEE
T ss_pred -----------------cc-cChhhhhhhhcccCCCEEEcCCcccceEEE
Confidence 11 122233356678999999999998888854
No 79
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=35.98 E-value=2.5e+02 Score=25.36 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=49.1
Q ss_pred CceEEecccccCHHHHHHHHhcC--cEEecCCccccccccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 017615 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~~~~~~~l~el~~------g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTC 127 (368)
..|+.+|+++. +++.+.|++.+ +..|..+.+.. ..+|. +..=|.=.||-+..
T Consensus 31 d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~~--~~lp~~~~~~~~g~~i~l~HG~~~~----------------- 90 (178)
T cd07394 31 QHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDEN--LNYPETKVITVGQFKIGLIHGHQVV----------------- 90 (178)
T ss_pred CEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCcc--ccCCCcEEEEECCEEEEEEECCcCC-----------------
Confidence 46999999986 88889998854 77777643211 02332 12233446774310
Q ss_pred chhHHHHHHHHHHhhCCceEEEEecCCCcceeee
Q 017615 128 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 161 (368)
Q Consensus 128 P~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi 161 (368)
|.- .-....+...+.++.++++|+.-.|.+.=.
T Consensus 91 ~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~~~ 123 (178)
T cd07394 91 PWG-DPDSLAALQRQLDVDILISGHTHKFEAFEH 123 (178)
T ss_pred CCC-CHHHHHHHHHhcCCCEEEECCCCcceEEEE
Confidence 000 011122223457889999999888977533
No 80
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.86 E-value=80 Score=26.64 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=37.2
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhH
Q 017615 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (368)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~ 131 (368)
-+.+.-+--|-+.+++++.++|++. |++-+....++..+.+++.|+.++---|..|.
T Consensus 58 lavv~~~~~~~~~~v~~~~~~g~~~------------------v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 58 LAVVCVPPDKVPEIVDEAAALGVKA------------------VWLQPGAESEELIEAAREAGIRVIGPNCLGVV 114 (116)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT-SE------------------EEE-TTS--HHHHHHHHHTT-EEEESS-HHHH
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCCE------------------EEEEcchHHHHHHHHHHHcCCEEEeCCcceEE
Confidence 3666666677788888888887542 33444488899999999999999999998764
No 81
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=34.49 E-value=69 Score=34.65 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 33 YGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 33 ~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
..+-..|.++|+.+.++.++. +++|.+.|++.-+|..+..|-.+|+.++.
T Consensus 474 ~~~hPaV~~~i~~vi~~a~~~-g~~v~vCGe~a~~p~~~~~l~~~G~~~ls 523 (565)
T TIGR01417 474 QPYNPAVLRLIKLVIDAAKAE-GIWVGMCGEMAGDERAIPLLLGLGLRELS 523 (565)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEeCCcCCCHHHHHHHHHCCCCEEE
Confidence 445789999999998888765 58999999999999999999999999885
No 82
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.09 E-value=64 Score=29.29 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCCceEEecccc-cCHHHHHHHHhcCcE--EecCCccccccc-cccCCCEEEEcCCCCCHHHHHHHHhc
Q 017615 43 VQIAYEARKQFPEEKIWITNEII-HNPTVNKRLEEMAVQ--NIPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVTLNNK 118 (368)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iI-HN~~Vv~~L~~~GV~--~v~~~~~~~~l~-el~~g~~VIIrAHGv~~~~~~~l~~~ 118 (368)
++++++......+++|.++|-=- =-.-+...|.++|.. +++... +++. .+..-| +||.|-|.+.-+....-+.
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l~~aD-iVIsat~~~~ii~~~~~~~ 108 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHTKQAD-IVIVAVGKPGLVKGDMVKP 108 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHHhhCC-EEEEcCCCCceecHHHccC
Confidence 34444443223356788777510 012266778888844 333211 1122 223334 8888888876333333355
Q ss_pred CCcEEeCcCchhH
Q 017615 119 NVQIVDTTCPWVS 131 (368)
Q Consensus 119 g~~iiDaTCP~V~ 131 (368)
+.-+||...|..-
T Consensus 109 ~~viIDla~prdv 121 (168)
T cd01080 109 GAVVIDVGINRVP 121 (168)
T ss_pred CeEEEEccCCCcc
Confidence 7888998888743
No 83
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=34.03 E-value=1.4e+02 Score=26.86 Aligned_cols=48 Identities=6% Similarity=-0.103 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCceEEEEecCC
Q 017615 107 AAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (368)
Q Consensus 107 v~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (368)
-.+.+...+++.|+. +.++..|....+.+..+++.-+.-.++.|||..
T Consensus 74 ~~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~ 122 (183)
T PRK09484 74 KSKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKLAIAPEQVAYIGDDL 122 (183)
T ss_pred CcHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 445666777777875 566667777777777777766667899999875
No 84
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=34.01 E-value=1.4e+02 Score=30.43 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=62.7
Q ss_pred EEE-eCCCC-CcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccC-CCEEE--
Q 017615 27 VKL-AESYG-FCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVV-- 101 (368)
Q Consensus 27 I~l-A~~~G-FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~-g~~VI-- 101 (368)
+++ .=|+| |.-..+.|++-|.+.+++.+-.-|.+-|-..+.-..+..|.+.||.++-+. -|.+ -....
T Consensus 98 ~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHi-------GLtPQs~~~lGG 170 (332)
T PLN02424 98 LLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHV-------GLTPQAISVLGG 170 (332)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEee-------cccceeehhhcC
Confidence 444 45777 777899999999998775433468888876666788999999999988543 1111 11112
Q ss_pred EcCCCCCHHHH-------HHHHhcCCcEEeCcCchhH
Q 017615 102 LPAFGAAVEEM-------VTLNNKNVQIVDTTCPWVS 131 (368)
Q Consensus 102 IrAHGv~~~~~-------~~l~~~g~~iiDaTCP~V~ 131 (368)
+|..|-+.+.. ..+++.|...+=-.|---.
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~ 207 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP 207 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH
Confidence 56677776532 3344556555555554444
No 85
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=33.60 E-value=3.7e+02 Score=24.50 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=43.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe-----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV----------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV----------- 288 (368)
|+++.-+ ++..-|..+...+.+...+. .+-.+.++++ .+....-.+.+..+.+..+|.+|+.
T Consensus 2 ig~~~~~-~~~~~~~~~~~~i~~~~~~~-----~g~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~ 74 (270)
T cd06308 2 IGFSQCN-LADPWRAAMNDEIQREASNY-----PDVELIIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVV 74 (270)
T ss_pred EEEEeeC-CCCHHHHHHHHHHHHHHHhc-----CCcEEEEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHH
Confidence 5555543 44455667777766532221 1123444433 3323333345555555689999887
Q ss_pred hhhhccCCCeEEeCCC
Q 017615 289 EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~ 304 (368)
+.+++.+.|...+.+.
T Consensus 75 ~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 75 EEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHCCCCEEEeCCC
Confidence 3344678899989763
No 86
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.57 E-value=4.5e+02 Score=25.43 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=69.6
Q ss_pred chHHHHHHhcCCcc-eecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCC
Q 017615 7 SDIIKKLKENGFEY-TWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85 (368)
Q Consensus 7 ~~~~~~~~~~~~~~-~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~ 85 (368)
-.|++.|.+.|++. +.|. -....+...+++..... .....+ ++-+..|..=+++..+.|+..+.=.
T Consensus 25 ~~i~~~L~~~Gv~~IEvG~--------P~~~~~~~~~~~~l~~~---~~~~~v--~~~~r~~~~di~~a~~~g~~~i~i~ 91 (262)
T cd07948 25 IEIAKALDAFGVDYIELTS--------PAASPQSRADCEAIAKL---GLKAKI--LTHIRCHMDDARIAVETGVDGVDLV 91 (262)
T ss_pred HHHHHHHHHcCCCEEEEEC--------CCCCHHHHHHHHHHHhC---CCCCcE--EEEecCCHHHHHHHHHcCcCEEEEE
Confidence 45788888888654 3342 22334555555554321 112335 4457899999999888888765310
Q ss_pred ccccccccccCCCEEEEcCCCCCHHH--------HHHHHhcCCcE----EeCc-CchhHHHHHHHHHHhhCCceEEEEe
Q 017615 86 EGKKQFDVVNKGDVVVLPAFGAAVEE--------MVTLNNKNVQI----VDTT-CPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 86 ~~~~~l~el~~g~~VIIrAHGv~~~~--------~~~l~~~g~~i----iDaT-CP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
++-.+.-.-..+|-+++. .+.++++|+.| .|++ || ...+.+.++++.+-|-..|.+.
T Consensus 92 --------~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 92 --------FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred --------EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEC
Confidence 000111111235555433 35667888877 5666 88 5667778888777665544433
No 87
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=33.55 E-value=61 Score=32.07 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=40.3
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe
Q 017615 216 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV 288 (368)
Q Consensus 216 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV 288 (368)
++.+++++.=---+..+.-.++..+.. +..+.+++ ..+++. -.-.++-+++.+|+ ..||.++|-
T Consensus 129 dl~qy~WihfE~Rnp~etlkM~~~I~~-~N~r~pe~---qrI~vS----vd~en~req~~~l~-am~DyVf~s 192 (308)
T KOG2947|consen 129 DLTQYGWIHFEARNPSETLKMLQRIDA-HNTRQPEE---QRIRVS----VDVENPREQLFQLF-AMCDYVFVS 192 (308)
T ss_pred ccceeeeEEEecCChHHHHHHHHHHHH-hhcCCCcc---ceEEEE----EEecCcHHHHHHHh-hcccEEEEE
Confidence 456888888777777777777777654 22222211 111111 12346788899998 699999998
No 88
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.07 E-value=56 Score=28.16 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=19.4
Q ss_pred ccCCCE-EEEcCCCCCHHHH---HHHHhcCCcEE
Q 017615 94 VNKGDV-VVLPAFGAAVEEM---VTLNNKNVQIV 123 (368)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~---~~l~~~g~~ii 123 (368)
+.+||+ |+|++.|-+|-+. +.++++|+.+|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
Confidence 557887 5699999999876 45667888776
No 89
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.93 E-value=3e+02 Score=25.09 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=44.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe-----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV----------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV----------- 288 (368)
++++.-. ++-.-|..+.+-++....+. +.++.++++--+...++ +++..+....+|.+|+.
T Consensus 2 i~vi~~~-~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~~~~~~-~~i~~~~~~~~dgiii~~~~~~~~~~~l 73 (277)
T cd06319 2 IAYIVSD-LRIPFWQIMGRGVKSKAKAL------GYDAVELSAENSAKKEL-ENLRTAIDKGVSGIIISPTNSSAAVTLL 73 (277)
T ss_pred eEEEeCC-CCchHHHHHHHHHHHHHHhc------CCeEEEecCCCCHHHHH-HHHHHHHhcCCCEEEEcCCchhhhHHHH
Confidence 4444422 33455777777776543322 23455566654443333 45555544789999886
Q ss_pred hhhhccCCCeEEeCCC
Q 017615 289 EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~ 304 (368)
+.+++.+.|...+...
T Consensus 74 ~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 74 KLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHCCCCEEEEecC
Confidence 4566778898888754
No 90
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.62 E-value=2.8e+02 Score=25.17 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV---------- 288 (368)
|+++.-++-+. -|..+.+-+++...+ ++ .++.+. .-+..+.++| +.+..+.++.+|++||.
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~-~g-----~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~ 72 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKE-LG-----YEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPF 72 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHH-HT-----CEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHH-cC-----CEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHH
Confidence 34555555555 677777777764333 22 223332 2233333443 45555656789999988
Q ss_pred -hhhhccCCCeEEeCCC
Q 017615 289 -EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~ 304 (368)
+-|++.|.|.+.+.+.
T Consensus 73 l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 73 LEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHTTSEEEEESST
T ss_pred HHHHhhcCceEEEEecc
Confidence 6677889999999888
No 91
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=32.04 E-value=85 Score=33.54 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=43.1
Q ss_pred hHHH-HHHhcCCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCC
Q 017615 8 DIIK-KLKENGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVE 85 (368)
Q Consensus 8 ~~~~-~~~~~~~~~~~g~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~ 85 (368)
.+|. .++-.|.++.||+. .+.|| |.|.-+ .++.. .+ |+-|..-......|..+ .
T Consensus 368 ~iv~~A~~~lG~PY~wGG~-----sp~gfDCSGlV~---~vy~~---~G----------I~LPR~s~~Q~~~G~~V-s-- 423 (481)
T PRK13914 368 AIIAEAQKHLGKAYSWGGN-----GPTTFDCSGYTK---YVFAK---AG----------ISLPRTSGAQYASTTRI-S-- 423 (481)
T ss_pred HHHHHHHHHcCCcccCCCC-----CCCCcccHHHHH---HHHHH---cC----------CCCCCChHHHHhcCccc-c--
Confidence 4555 45555999999985 56799 999854 55543 21 44444445555566443 2
Q ss_pred ccccccccccCCCEEEEcC
Q 017615 86 EGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 86 ~~~~~l~el~~g~~VIIrA 104 (368)
.+++.+||.|+|..
T Consensus 424 -----~selqpGDLVFF~~ 437 (481)
T PRK13914 424 -----ESQAKPGDLVFFDY 437 (481)
T ss_pred -----cccCCCCCEEEeCC
Confidence 35677899888863
No 92
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=32.03 E-value=71 Score=31.87 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHhcCCcEEeCc----------CchhHHHHHHHHHHhhCCceEEEEec
Q 017615 114 TLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHGK 152 (368)
Q Consensus 114 ~l~~~g~~iiDaT----------CP~V~kv~~~v~~~~~~Gy~IIIiG~ 152 (368)
.+++.|..+||.| ||-.+.+.+++++|.++||-+++.|+
T Consensus 114 iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G~ 162 (287)
T cd01917 114 IVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCDE 162 (287)
T ss_pred HHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEecH
Confidence 4456788888876 45778999999999999999999993
No 93
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=31.78 E-value=53 Score=32.84 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHHhhCCCCceEEecc--cccCHHHHHHHHhcCcEEecCCccccccccccCCC-EEEEcCCC-CCHHHH
Q 017615 37 WGVERAVQIAYEARKQFPEEKIWITNE--IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD-VVVLPAFG-AAVEEM 112 (368)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~~Vy~lG~--iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~-~VIIrAHG-v~~~~~ 112 (368)
-|-+.||+.|+. + -.|..--| =+-.+.-+++++..||.++++. .+.+..|. .|+|.-+| .+-.+-
T Consensus 32 GGa~mAiefAeA-----G-HDVVLaePn~d~~dd~~w~~vedAGV~vv~dD-----~eaa~~~Ei~VLFTPFGk~T~~Ia 100 (340)
T COG4007 32 GGARMAIEFAEA-----G-HDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDD-----AEAAEHGEIHVLFTPFGKATFGIA 100 (340)
T ss_pred CchHHHHHHHHc-----C-CcEEeecCCccccCHHHHHHHHhcCcEEecCc-----hhhhhcceEEEEecccchhhHHHH
Confidence 367778877753 1 11222111 1456777899999999999863 33344454 48899999 554444
Q ss_pred HHHHh---cCCcE-EeCcCchhHHHH
Q 017615 113 VTLNN---KNVQI-VDTTCPWVSKVW 134 (368)
Q Consensus 113 ~~l~~---~g~~i-iDaTCP~V~kv~ 134 (368)
+++.+ -|..| =-+|||-|.--+
T Consensus 101 rei~~hvpEgAVicnTCT~sp~vLy~ 126 (340)
T COG4007 101 REILEHVPEGAVICNTCTVSPVVLYY 126 (340)
T ss_pred HHHHhhCcCCcEecccccCchhHHHH
Confidence 44433 13333 334555544333
No 94
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.68 E-value=1.8e+02 Score=29.14 Aligned_cols=102 Identities=8% Similarity=0.044 Sum_probs=67.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCc-cccccc---cccCCCE
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE-GKKQFD---VVNKGDV 99 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~-~~~~l~---el~~g~~ 99 (368)
.|-.+...|.-||-|+..||+.+.+... + .++|-+-- .|.......-+.|+-.|.=.+ ..+++. ++-++..
T Consensus 168 D~iLIkdNHi~~~g~i~~av~~~r~~~~-~-~~kIeVEv---~tleea~~a~~agaDiImLDnmspe~l~~av~~~~~~~ 242 (290)
T PRK06559 168 DAIMLKDNHIAAVGSVQKAIAQARAYAP-F-VKMVEVEV---ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAGRS 242 (290)
T ss_pred ceEEEcHHHHHhhccHHHHHHHHHHhCC-C-CCeEEEEC---CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhcCce
Confidence 3666778898899899999999877654 1 24566654 466666666677877765211 001111 1113455
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcCchh
Q 017615 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 130 (368)
Q Consensus 100 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V 130 (368)
++--|=||+++-.....+-|+.+|.+.+|+-
T Consensus 243 ~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 243 RIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 6667778999988888888888888887764
No 95
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=31.56 E-value=1.5e+02 Score=28.67 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=28.5
Q ss_pred ccccCCCE-EEEcCCCC---CHHHHHHHHhcCCcEEeCcC
Q 017615 92 DVVNKGDV-VVLPAFGA---AVEEMVTLNNKNVQIVDTTC 127 (368)
Q Consensus 92 ~el~~g~~-VIIrAHGv---~~~~~~~l~~~g~~iiDaTC 127 (368)
.++.+||+ +||+--|. |-++-+.++++|..||=-|-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 35567886 56888885 77899999999999987774
No 96
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=30.82 E-value=3.1e+02 Score=28.87 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=30.1
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHH
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLE 75 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~ 75 (368)
+++++..+..||..|.+|.+. ....++.=..-+. +.-|+|+..+++.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~---~a~~~~~i~~~~i-d~~~~~~~~~~~~ 166 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNL---MAVLNPNITHTMI-DGALFQDEVEARN 166 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHH---HHHhCCCceEEEE-EchhCHhHHHhcC
Confidence 789999999999977776643 3333432122223 6678887766553
No 97
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=30.45 E-value=1.2e+02 Score=27.36 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=47.3
Q ss_pred CceEEecccccCH-----HHHHHHHhcCcEEecCCccc-----------cccccccCC-CEE-EEcCCCCCHHHHHHHHh
Q 017615 56 EKIWITNEIIHNP-----TVNKRLEEMAVQNIPVEEGK-----------KQFDVVNKG-DVV-VLPAFGAAVEEMVTLNN 117 (368)
Q Consensus 56 ~~Vy~lG~iIHN~-----~Vv~~L~~~GV~~v~~~~~~-----------~~l~el~~g-~~V-IIrAHGv~~~~~~~l~~ 117 (368)
+.|-+.| +=+|| .|.+.|.++|-+++.-+++. .+|.++|.. |+| |||.--..|++.+++-+
T Consensus 17 K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 17 KTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred ceEEEEe-cCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 4577766 34555 68999999998877644311 267777642 444 89998888888888888
Q ss_pred cCCcEE
Q 017615 118 KNVQIV 123 (368)
Q Consensus 118 ~g~~ii 123 (368)
+|.+++
T Consensus 96 ~~~kv~ 101 (140)
T COG1832 96 KGAKVV 101 (140)
T ss_pred hCCCeE
Confidence 886665
No 98
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.97 E-value=1e+02 Score=31.91 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCc--EEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC-CcEEEEcC
Q 017615 97 GDVVVLPAFGAAVEEMVTLNNKNVQ--IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (368)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~--iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a-~~~~vv~~ 173 (368)
+-+||+-.--+...+.++|+++|.. +||-- ..++..++|+. ++.||+.++|+---.|-. .+++++..
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d---------~~~~~~~~g~~-vI~GD~td~e~L~~AgI~~A~aVI~~t 310 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL---------GLEHRLPDDAD-LIPGDSSDSAVLKKAGAARARAILALR 310 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc---------hhhhhccCCCc-EEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence 4567787777889999999988865 46632 23445567876 689999999987544433 25667766
Q ss_pred hhhHHHh
Q 017615 174 MKEAEYV 180 (368)
Q Consensus 174 ~~e~~~~ 180 (368)
.+|.+++
T Consensus 311 ~dD~~Nl 317 (393)
T PRK10537 311 DNDADNA 317 (393)
T ss_pred CChHHHH
Confidence 6666553
No 99
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=29.92 E-value=98 Score=23.79 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhCCce-EEEEecCC
Q 017615 110 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (368)
Q Consensus 110 ~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-IIIiG~~~ 154 (368)
++...|++.|+.+ +|-.. .++.++.+...+.||. ++++|+..
T Consensus 22 ~~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 22 KLLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 3567777888876 55543 5777777777788865 78888643
No 100
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=29.88 E-value=95 Score=29.68 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=45.0
Q ss_pred EEEcCCCCCH--------HHHHHHHhcCCcEEeCcCch--------------hHHHHHHHHHHhhCCceEEEEecCCCcc
Q 017615 100 VVLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (368)
Q Consensus 100 VIIrAHGv~~--------~~~~~l~~~g~~iiDaTCP~--------------V~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (368)
.+||-|.|+| ++.+.|.+.|+...=+.=|. -.+.+...+.+..+|+.|+++| ..|.-
T Consensus 2 ~lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~ 80 (243)
T PF10096_consen 2 ALIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQY 80 (243)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceec
Confidence 3677788877 66677777887764333333 4577788888899999999999 77777
Q ss_pred eeeecc
Q 017615 158 TVATAS 163 (368)
Q Consensus 158 v~gi~g 163 (368)
.-+..|
T Consensus 81 ~~~~sg 86 (243)
T PF10096_consen 81 GNSVSG 86 (243)
T ss_pred CCCccc
Confidence 444443
No 101
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.45 E-value=1.4e+02 Score=28.63 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=39.7
Q ss_pred EcCCCCCHHHH-HHHHhcCCcEEe--CcCchhHHHHHHHHHHhhCCceEEEEecC
Q 017615 102 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 102 IrAHGv~~~~~-~~l~~~g~~iiD--aTCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
...|+++.+.. .+++..|+.++- ..|+.-..+....+-+.+-|...++.|+-
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCc
Confidence 47799999887 567779998765 77776666666666666669999999964
No 102
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=29.22 E-value=74 Score=33.85 Aligned_cols=68 Identities=12% Similarity=0.199 Sum_probs=48.7
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEEc
Q 017615 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVK 172 (368)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~i--iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv~ 172 (368)
+.++|+-.--+...+.+.|+++|..+ ||.- .++++++.+.|+. +++||..+||+---.|-.. +++++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 55788888888999999999988655 6643 3456666677877 6799999999865444332 445554
No 103
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=28.98 E-value=54 Score=23.80 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCC
Q 017615 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 105 (368)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAH 105 (368)
.++.|+++|+.++.. ++|..+|.|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 568899999999975 35777888876
No 104
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.87 E-value=33 Score=27.08 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=38.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC
Q 017615 99 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 166 (368)
Q Consensus 99 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~ 166 (368)
-+|+=.||.....- +-+..++.|+++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~~-------------------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHSG-------------------RYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHHH-------------------HHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 36666899854433 33456899999999999999999999998877753
No 105
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.75 E-value=1e+02 Score=30.50 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEE
Q 017615 97 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (368)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIi 150 (368)
+-.+|.-++|.|.+..+++++.|+.|+ ++|+.+. .++++.+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 333455578999899999999999988 5666654 456666778887776
No 106
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=28.53 E-value=1.7e+02 Score=28.45 Aligned_cols=81 Identities=9% Similarity=-0.031 Sum_probs=43.3
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHh---cC-CcEEeCcCchhHHH
Q 017615 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN---KN-VQIVDTTCPWVSKV 133 (368)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~---~g-~~iiDaTCP~V~kv 133 (368)
.|..--=-.|+.+++.+++.|..++.=. + ...|.. +.-+..+.+.+.+ .| +.+.=.+-.-+.-+
T Consensus 179 ~fRpP~G~~n~~~~~~l~~~G~~~v~Ws-----v---d~~Dw~----~~~~~~i~~~v~~~~~~G~IILmHd~~~T~~aL 246 (268)
T TIGR02873 179 WFAPPSGSFNDNVVQIAADLQMGTIMWT-----V---DTIDWK----NPSPSVMVNRVLSKIHPGAMVLMHPTASSTEGL 246 (268)
T ss_pred EEECCCCCCCHHHHHHHHHCCCeEEEec-----c---CCCCCC----CCCHHHHHHHHHhcCCCCcEEEEcCCccHHHHH
Confidence 4544444679999999999999987521 0 011110 0011122222211 12 22222223345677
Q ss_pred HHHHHHHhhCCceEEEE
Q 017615 134 WTSVEKHKKGDYTSIIH 150 (368)
Q Consensus 134 ~~~v~~~~~~Gy~IIIi 150 (368)
-..+..+.++||+.+-+
T Consensus 247 ~~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 247 EEMITIIKEKGYKIGTI 263 (268)
T ss_pred HHHHHHHHHCCCEEEeH
Confidence 78888888899987643
No 107
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=28.45 E-value=4.4e+02 Score=27.02 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=37.0
Q ss_pred ecccccCHHHHHHHHhcCcEEecCCcccccccccc-CCCEEEEcCCCCCHH--HHHHHHhcCCcEE
Q 017615 61 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN-KGDVVVLPAFGAAVE--EMVTLNNKNVQIV 123 (368)
Q Consensus 61 lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~-~g~~VIIrAHGv~~~--~~~~l~~~g~~ii 123 (368)
.-+.-.|+...+.|+++|+.+..... -+.+. .-| +||-+=||+|. .+++++++|+.|+
T Consensus 28 ~~D~~~~~~~~~~l~~~gi~~~~~~~----~~~~~~~~d-~vV~SpgI~~~~~~~~~a~~~~i~v~ 88 (448)
T TIGR01081 28 GSDANVYPPMSTQLEAQGIEIIEGFD----AAQLEPKPD-LVVIGNAMKRGNPCVEAVLNLNLPYT 88 (448)
T ss_pred EECCCCCcHHHHHHHHCCCEEeCCCC----HHHCCCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 34444566566679999998875321 12222 235 66777889764 6777888888775
No 108
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.39 E-value=5.2e+02 Score=24.83 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec--CCcc----c----cccccccCCCEEEEcCCCCC
Q 017615 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP--VEEG----K----KQFDVVNKGDVVVLPAFGAA 108 (368)
Q Consensus 39 V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~--~~~~----~----~~l~el~~g~~VIIrAHGv~ 108 (368)
|.|.+.+|++..+. +..|+.+..= +.....+.|++.|..+.. +..+ . ..+.+. ..|.||+-..+++
T Consensus 17 v~Rcl~LA~~l~~~--g~~v~f~~~~-~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~-~~d~vV~D~y~~~ 92 (279)
T TIGR03590 17 VMRCLTLARALHAQ--GAEVAFACKP-LPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEE-KFDILIVDHYGLD 92 (279)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEeCC-CCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc-CCCEEEEcCCCCC
Confidence 78999999987553 2344333222 345557889999987653 2110 0 001111 2356666666777
Q ss_pred HHHHHHHHhcCCc
Q 017615 109 VEEMVTLNNKNVQ 121 (368)
Q Consensus 109 ~~~~~~l~~~g~~ 121 (368)
.+..+.++.++..
T Consensus 93 ~~~~~~~k~~~~~ 105 (279)
T TIGR03590 93 ADWEKLIKEFGRK 105 (279)
T ss_pred HHHHHHHHHhCCe
Confidence 7777777666644
No 109
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.25 E-value=5.3e+02 Score=24.58 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=74.2
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe----------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV---------- 288 (368)
.+|++-=.. +-.-|.+++..+.+...+. + ..+...+|=-+...+ ++++.|.+.+||.+|+.
T Consensus 3 ~IGvivp~~-~npff~~ii~gIe~~a~~~-G-----y~l~l~~t~~~~~~e--~~i~~l~~~~vDGiI~~s~~~~~~~l~ 73 (279)
T PF00532_consen 3 TIGVIVPDI-SNPFFAEIIRGIEQEAREH-G-----YQLLLCNTGDDEEKE--EYIELLLQRRVDGIILASSENDDEELR 73 (279)
T ss_dssp EEEEEESSS-TSHHHHHHHHHHHHHHHHT-T-----CEEEEEEETTTHHHH--HHHHHHHHTTSSEEEEESSSCTCHHHH
T ss_pred EEEEEECCC-CCcHHHHHHHHHHHHHHHc-C-----CEEEEecCCCchHHH--HHHHHHHhcCCCEEEEecccCChHHHH
Confidence 455444322 3334778888877643322 2 234445544444333 88888888999999999
Q ss_pred hhhhccCCCeEEeCCCCCcC-C-CCcchhhhccchhhhhcccccCCCcE-EEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIG-P-GNKIAYKLMHGELVEKENWLPKGQIT-IGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~-VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
.+.+. +.|..++....+-+ . ..........+... ....+..|.++ |++.+|...-.+..+..-.+...+
T Consensus 74 ~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a-~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al 145 (279)
T PF00532_consen 74 RLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEA-TEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDAL 145 (279)
T ss_dssp HHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHH-HHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHH-HHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHH
Confidence 44444 78999999885443 1 10100000111111 11222358999 999999877777777776665544
No 110
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=27.17 E-value=67 Score=28.61 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=48.1
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeCcCchhHHHHHHHHHHhhC-CceEEEEecCCCcceeeeccc
Q 017615 95 NKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATASF 164 (368)
Q Consensus 95 ~~g~~VIIrAHGv~~~~~~~l~~~-g~~iiDaTCP~V~kv~~~v~~~~~~-Gy~IIIiG~~~HpEv~gi~g~ 164 (368)
++|++|.|-+-=....+.+.|..+ ++.|| .+--..+..+.+. +.+|++.|=.-+|+..++.|.
T Consensus 18 ~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-------Tnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G~ 82 (161)
T PF00455_consen 18 EDGDTIFLDSGTTTLELAKYLPDKKNLTVV-------TNSLPIANELSENPNIEVILLGGEVNPKSLSFVGP 82 (161)
T ss_pred CCCCEEEEECchHHHHHHHHhhcCCceEEE-------ECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEECc
Confidence 568888888888888888989888 78887 3444455555554 899999998878877777664
No 111
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.96 E-value=1e+02 Score=25.86 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.0
Q ss_pred CCCEEEEcCC--C----CCHHHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhCCce-EEEEecCC
Q 017615 96 KGDVVVLPAF--G----AAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 154 (368)
Q Consensus 96 ~g~~VIIrAH--G----v~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~-IIIiG~~~ 154 (368)
+-+++|+... . ..-++.+.|++.|+.+ +|-. .++.++.+...+.|+. ++|+|+..
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 3445666543 2 2245677888889887 5654 5777777777788987 67778554
No 112
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.79 E-value=7.2e+02 Score=25.62 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=58.1
Q ss_pred ceEEEEeCCCCCcc----cHHHHHHHHHHHHhh--CCCCceEEecccccC--HHHHHHHHhcCcEEecCCcc--cccccc
Q 017615 24 NVKVKLAESYGFCW----GVERAVQIAYEARKQ--FPEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEG--KKQFDV 93 (368)
Q Consensus 24 ~mkI~lA~~~GFC~----GV~RAI~~a~~~~~~--~~~~~Vy~lG~iIHN--~~Vv~~L~~~GV~~v~~~~~--~~~l~e 93 (368)
+..|+-+...||.. |...|++...+.+.+ ..++.|-.+|++--. .++..-|++.|+.++.-.++ ..++..
T Consensus 129 ~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~ 208 (427)
T PRK02842 129 GVPVLNYSGSGLETTFTQGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPA 208 (427)
T ss_pred CCeEEEeeCCCccccHHHHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhh
Confidence 35678888999953 345555443333331 113468889984322 34666779999997522221 122333
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCch
Q 017615 94 VNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (368)
Q Consensus 94 l~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~ 129 (368)
.+.+..++. .+...-..-+.|+++|...+-..-|+
T Consensus 209 ~~~~~~~~~-~~~~~~~~A~~L~~~GiP~~~~~~P~ 243 (427)
T PRK02842 209 IGPGTVVAL-AQPFLSDTARALRERGAKVLTAPFPL 243 (427)
T ss_pred cCcCcEEEE-eCHHHHHHHHHHHHcCCccccCCCCc
Confidence 333444432 22222246667788898887776665
No 113
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=26.41 E-value=2.4e+02 Score=26.83 Aligned_cols=74 Identities=12% Similarity=0.194 Sum_probs=46.1
Q ss_pred EcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe-----------hhh
Q 017615 224 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-----------EIA 291 (368)
Q Consensus 224 sQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-----------eia 291 (368)
..+++..+-|..+.+.+++...+. + -++.+.++ .....+| +.+..|.++.+|.+|+. +.+
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~a~~~-g-----~~v~~~~~--~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~ 75 (302)
T TIGR02634 4 SIDDLRLERWQKDRDIFVAAAESL-G-----AKVFVQSA--NGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEA 75 (302)
T ss_pred ecCccchhhHHHHHHHHHHHHHhc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 456788888888888887643322 2 23333222 2233444 45555655779999998 345
Q ss_pred hccCCCeEEeCCCC
Q 017615 292 EDRGIPSYWIDSEK 305 (368)
Q Consensus 292 ~~~~~~t~~Ie~~~ 305 (368)
++.+.|...+.+..
T Consensus 76 ~~~~iPvV~~d~~~ 89 (302)
T TIGR02634 76 KDEGIKVVAYDRLI 89 (302)
T ss_pred HHCCCeEEEecCcC
Confidence 67788988887653
No 114
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=26.22 E-value=1.1e+02 Score=34.69 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEecccccC-HHHHHHHHhcCcEEec
Q 017615 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIHN-PTVNKRLEEMAVQNIP 83 (368)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN-~~Vv~~L~~~GV~~v~ 83 (368)
+-..|.+||+.+.++.++. ++++-+.|++..+ |.....|-.+|+.++.
T Consensus 723 ~hPav~~ai~~vi~aa~~~-g~~vgicge~a~~~p~~~~~l~~~G~~~ls 771 (795)
T PRK06464 723 RNPAVKKLISMAIKAAKKA-GKYVGICGQAPSDHPDFAEWLVEEGIDSIS 771 (795)
T ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEcCCCCCCcHHHHHHHHHCCCCEEE
Confidence 4569999999999988875 5799999999998 9999999999999886
No 115
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=26.10 E-value=1.8e+02 Score=27.84 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=19.6
Q ss_pred CCCcEEEEeecCCCcHHHHHHHHHHHHhhh
Q 017615 331 KGQITIGITSGASTPDKAVEDVLKKVFEIK 360 (368)
Q Consensus 331 ~~~~~VGITAGASTP~~lI~eVi~~l~~~~ 360 (368)
.+.-+|+|++|...|- +...+-+.|+++.
T Consensus 132 rg~l~IaIST~G~sP~-lar~lR~~ie~~l 160 (223)
T PRK05562 132 TKNFVFALNTKGGSPK-TSVFIGEKVKNFL 160 (223)
T ss_pred cCCEEEEEECCCcCcH-HHHHHHHHHHHHH
Confidence 3678899999998884 3344555555543
No 116
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=26.05 E-value=2.5e+02 Score=28.39 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=60.4
Q ss_pred eEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 017615 25 VKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (368)
Q Consensus 25 mkI~lA~~~GFC~G---V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI 101 (368)
|+|.+-.-.|.-.| |.|-..+|.+..+. +..-+|.-++.+-+ +.-. ...|..+..-.. ..++.+. +.|.||
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~--~~~~-~~~~f~~~~~~~-~n~ik~~-k~d~lI 74 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEA--IIHK-VYEGFKVLEGRG-NNLIKEE-KFDLLI 74 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhh--hhhh-hhhhccceeeec-ccccccc-cCCEEE
Confidence 55555444444444 89999999887664 23456766655443 1111 112222222110 0122333 468999
Q ss_pred EcCCCCCHHHHHHHH-hcCCc--EEeCcCchhHH
Q 017615 102 LPAFGAAVEEMVTLN-NKNVQ--IVDTTCPWVSK 132 (368)
Q Consensus 102 IrAHGv~~~~~~~l~-~~g~~--iiDaTCP~V~k 132 (368)
|-+-|++.+..+.++ +.|.+ ++|.-|+.--+
T Consensus 75 ~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~ 108 (318)
T COG3980 75 FDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK 108 (318)
T ss_pred EeccCCCHHHHHHHHHHhCCcEEEecCCCccchh
Confidence 999999999999998 66644 58999986433
No 117
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.89 E-value=1.3e+02 Score=30.55 Aligned_cols=74 Identities=18% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHH--HHHHHHhhhhcCCEEEEe-----hhhhccCCC-e
Q 017615 227 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQER--QDAMYKMVEEKVDLILVV-----EIAEDRGIP-S 298 (368)
Q Consensus 227 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~R--Q~a~~eLa~~~vD~miVV-----eia~~~~~~-t 298 (368)
.|+.+++++.++.+.++ +. .-+...||+|...... ++.++.|..-.+|++||- .++++.+|+ -
T Consensus 45 nfs~~~l~e~i~~ah~~-----gk----k~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ 115 (347)
T COG0826 45 NFSVEDLAEAVELAHSA-----GK----KVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLP 115 (347)
T ss_pred cCCHHHHHHHHHHHHHc-----CC----eEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCCCc
Confidence 68889999999888752 21 1355779999988777 899999988889999998 889888854 4
Q ss_pred EEeCCCCCcCC
Q 017615 299 YWIDSEKRIGP 309 (368)
Q Consensus 299 ~~Ie~~~eL~~ 309 (368)
+|+.+..-+..
T Consensus 116 ih~S~q~~v~N 126 (347)
T COG0826 116 IHVSTQANVTN 126 (347)
T ss_pred EEEeeeEecCC
Confidence 66766655543
No 118
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=25.62 E-value=1.7e+02 Score=29.55 Aligned_cols=72 Identities=13% Similarity=0.032 Sum_probs=45.7
Q ss_pred cCHHHHHHHHhcCcEEec-CCcccc-ccc-cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-EeCcCchhHHHHHHHHH
Q 017615 66 HNPTVNKRLEEMAVQNIP-VEEGKK-QFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEK 139 (368)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~-~~~~~~-~l~-el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~ 139 (368)
-||.+++.|.+.|..+-= +..+.. -+. .+ +++.+++...+-+++.++.+.+.|+.+ +|.-.-+ .++.+.+++
T Consensus 38 ~~~~il~~l~~~G~g~DvaS~~El~~al~~G~-~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a~~ 113 (379)
T cd06836 38 PLVPVLRLLAEAGAGAEVASPGELELALAAGF-PPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALVAE 113 (379)
T ss_pred CCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCC-ChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHHHH
Confidence 467799999999876521 111110 000 12 356799999999999999999999855 5554333 344444443
No 119
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=25.43 E-value=6.9e+02 Score=24.96 Aligned_cols=43 Identities=16% Similarity=0.025 Sum_probs=27.8
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 98 ~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
+.|-|+-+|.+++..+.++..+ +.-.++.+.++.+.+.|..+.
T Consensus 116 ~~v~iSldg~~~e~~d~irg~~--------g~f~~~~~~i~~l~~~g~~v~ 158 (378)
T PRK05301 116 DHIQLSFQDSDPELNDRLAGTK--------GAFAKKLAVARLVKAHGYPLT 158 (378)
T ss_pred CEEEEEecCCCHHHHHHHcCCC--------chHHHHHHHHHHHHHCCCceE
Confidence 4577888898888888775321 123455556666777776543
No 120
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=25.24 E-value=1e+02 Score=31.82 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEe
Q 017615 106 GAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 106 Gv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
|+.|...+++.++|+++-|. -+.....+..++|.+|++=|
T Consensus 130 GIGpay~dk~~R~gir~~Dl------d~~~~l~~a~~~gk~vLfEG 169 (363)
T cd03108 130 GIGPAYEDKAARRGIRVGDL------DTSYLINEAIQAGKKVLFEG 169 (363)
T ss_pred cchHHHHHhhhccCCeEEeC------cHHHHHHHHHHcCCcEEEEc
Confidence 77899999999999999987 33455566677899999877
No 121
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=3.5e+02 Score=25.95 Aligned_cols=66 Identities=14% Similarity=0.353 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhC-CCCceEEecccc-cCHHHH----HHHHhcCcE----EecCCc-cccccccccCCCEEEEcC
Q 017615 39 VERAVQIAYEARKQF-PEEKIWITNEII-HNPTVN----KRLEEMAVQ----NIPVEE-GKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 39 V~RAI~~a~~~~~~~-~~~~Vy~lG~iI-HN~~Vv----~~L~~~GV~----~v~~~~-~~~~l~el~~g~~VIIrA 104 (368)
+.+|+++..+.+++. ++.-+|.++..+ |.-.+- +.|++.||. .++..| ++..++-+..+|.+||.+
T Consensus 112 t~~Al~lil~~lk~~~~k~vi~L~d~~vs~SGel~~~i~~~mK~~~I~g~~~lvk~~D~eLk~~e~VaTsD~~IIds 188 (211)
T COG2454 112 TDKALDLLLEFLKDVEPKSVIFLFDAPVSKSGELAGRIEEKMKSLGIPGEASLVKNADFELKELEVVATSDSGIIDS 188 (211)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEeCCCCCccHHHHHHHHHHHHhcCCCceeEeccCcCHHHHhcCceeecCeeeeee
Confidence 578999999988874 344599999999 554443 344556665 555443 222333333455555544
No 122
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.98 E-value=5.3e+02 Score=23.47 Aligned_cols=113 Identities=14% Similarity=0.193 Sum_probs=55.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV---------- 288 (368)
|+++..++.+ .-|..+.+.+.+...+ ++ ..+.+.++ +...++|.. ++.|.+..+|.+|+.
T Consensus 2 Igvv~~~~~~-~~~~~~~~~i~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~ 72 (269)
T cd06281 2 IGCLVSDITN-PLLAQLFSGAEDRLRA-AG-----YSLLIANS--LNDPERELEILRSFEQRRMDGIIIAPGDERDPELV 72 (269)
T ss_pred EEEEecCCcc-ccHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHH
Confidence 4566654332 4456666665543222 22 22333332 112344544 445555689999998
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccccCCCcEEEEeecCC
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWLPKGQITIGITSGAS 343 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l~~~~~~VGITAGAS 343 (368)
+.+++.+.|...+++..+ ..-..+... ...+.. -...++..|.++|++-+|..
T Consensus 73 ~~~~~~~ipvV~i~~~~~-~~~~~V~~d~~~~g~~-a~~~l~~~G~~~i~~l~~~~ 126 (269)
T cd06281 73 DALASLDLPIVLLDRDMG-GGADAVLFDHAAGMRQ-AVEYLISLGHRRIALVGGGS 126 (269)
T ss_pred HHHHhCCCCEEEEecccC-CCCCEEEECcHHHHHH-HHHHHHHCCCcEEEEecCcc
Confidence 344567889999987644 110001000 000010 01112224788999888754
No 123
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.92 E-value=2.8e+02 Score=25.69 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=44.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV---------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV---------- 288 (368)
+|+++++ ++-.-|..+...+.+...+ .+ -++.+.++ .-..++|. .+..+.+..+|.+|+.
T Consensus 2 ~~~~~~~-~~~~f~~~~~~gi~~~~~~-~G-----~~~~~~~~--~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~ 72 (272)
T cd06313 2 AAFSNIG-LQATWCAQGKQAADEAGKL-LG-----VDVTWYGG--ALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEA 72 (272)
T ss_pred cceeecc-cCChHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHH
Confidence 5666665 4555677777777653222 12 23333322 22445553 3455555789999996
Q ss_pred -hhhhccCCCeEEeCCC
Q 017615 289 -EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~ 304 (368)
+-+.+.+.|..++.+.
T Consensus 73 i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 73 VQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHCCCcEEEeCCC
Confidence 3345668899998764
No 124
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=24.75 E-value=2.3e+02 Score=26.21 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=51.4
Q ss_pred HHHHHHHhcCcEEecCCcccc----------------ccccccCCCEEEEcCCCC-CHH-HHHHHHhcCCcEEeCcCchh
Q 017615 69 TVNKRLEEMAVQNIPVEEGKK----------------QFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWV 130 (368)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~~~----------------~l~el~~g~~VIIrAHGv-~~~-~~~~l~~~g~~iiDaTCP~V 130 (368)
+++.+|.++|+..-... ... -...+ ...+|-++.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~-~~~~~~~~f~~~~g~~~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------ 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAP-ELPPAAAAFWSGLGVDPAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------ 134 (193)
T ss_pred HHHHHHHHCCCEeccCC-CCCHHHHHHHHHcCCCHHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC------
Confidence 67888999998764321 000 00111 134788999995 556 78889999999986
Q ss_pred HHHHHHHHHHhhCCceEEEEecCCCcceeeecc
Q 017615 131 SKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS 163 (368)
Q Consensus 131 ~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g 163 (368)
.+.+-+|++.=|..+||...+..
T Consensus 135 ----------~~a~l~vVl~~Dyl~p~L~~~n~ 157 (193)
T TIGR03882 135 ----------SEADLTVVLTDDYLDPELAAINQ 157 (193)
T ss_pred ----------CCCCEEEEEeCCCCChHHHHHHH
Confidence 33456777777888888777643
No 125
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.71 E-value=4e+02 Score=21.96 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l 115 (368)
..+...|.+.|...+++. .+-|.+||.+=+|..+-.++.
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~k~ 55 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQKS 55 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHHHH
Confidence 346678999999988752 234789999999877665544
No 126
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=24.70 E-value=5.2e+02 Score=23.28 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=60.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe---------h
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV---------E 289 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV---------e 289 (368)
|+++...+ +-.-|..+.+-+.+... +++ -++..+++ ....++|.. ++.|.+..+|.+|+. +
T Consensus 2 igvv~~~~-~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 72 (265)
T cd06299 2 IGVIVPDI-RNPYFASLATAIQDAAS-AAG-----YSTIIGNS--DENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLE 72 (265)
T ss_pred EEEEecCC-CCccHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHH
Confidence 45554332 23455666666655322 222 23333333 223344433 455555689999987 4
Q ss_pred hhhccCCCeEEeCCCCCcCCCCcchhhh-ccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHHHH
Q 017615 290 IAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKK 355 (368)
Q Consensus 290 ia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~~ 355 (368)
-+++.+.|...+.+..+=.....+...- ...... ....+..|.++|++..|..+..+..+....+
T Consensus 73 ~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~-~~~l~~~g~~~I~~i~~~~~~~~~~~R~~gf 138 (265)
T cd06299 73 DLLKRGIPVVFVDREITGSPIPFVTSDPQPGMTEA-VSLLVALGHKKIGYISGPQDTSTGRERLEAF 138 (265)
T ss_pred HHHhCCCCEEEEecccCCCCCCEEEECcHHHHHHH-HHHHHHcCCCcEEEEeCCCCcccHHHHHHHH
Confidence 4456788998887642111101111110 001110 0111223688999988866544443433333
No 127
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=24.68 E-value=4.5e+02 Score=23.44 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCc-cccccccccCCCEEEEcCCCCCHHHHHH
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE-GKKQFDVVNKGDVVVLPAFGAAVEEMVT 114 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~-~~~~l~el~~g~~VIIrAHGv~~~~~~~ 114 (368)
.+.|+.|++...+... .+.+++++ +=||.-..+|-+.|+. +...+ | .+. -.+|...+.++=-++++..+.
T Consensus 58 i~sve~a~~~l~~~~~--~~~~v~vl---~k~~~da~~l~~~g~~-i~~iniG--~~~-~~~g~~~v~~~v~l~~~e~~~ 128 (151)
T TIGR00854 58 FVSLEKTINVIHKPAY--HDQTIFLL---FRNPQDVLTLVEGGVP-IKTVNVG--GMH-FSNGKKQITKKVSVDDQDITA 128 (151)
T ss_pred EEEHHHHHHHHhCcCC--CCceEEEE---ECCHHHHHHHHHcCCC-CCEEEEC--Ccc-cCCCCEEEecceeeCHHHHHH
Confidence 4688888888766332 24578885 7899999999999987 33321 1 111 124777888888888888776
Q ss_pred HH
Q 017615 115 LN 116 (368)
Q Consensus 115 l~ 116 (368)
++
T Consensus 129 l~ 130 (151)
T TIGR00854 129 FR 130 (151)
T ss_pred HH
Confidence 64
No 128
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=24.46 E-value=1e+02 Score=32.45 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=42.7
Q ss_pred cCCCCCHHHHHHHHhcCCcEEeCcC---------------------------------------------chhHHHHHHH
Q 017615 103 PAFGAAVEEMVTLNNKNVQIVDTTC---------------------------------------------PWVSKVWTSV 137 (368)
Q Consensus 103 rAHGv~~~~~~~l~~~g~~iiDaTC---------------------------------------------P~V~kv~~~v 137 (368)
..-|+.|.-.+++.++|+.+.|--= |+|.-+....
T Consensus 130 TgrGIGPaY~DKv~R~giRv~DL~d~~~l~~kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l 209 (430)
T COG0104 130 TGRGIGPAYEDKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLL 209 (430)
T ss_pred CCCccChhhhhhHhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHH
Confidence 4458999999999999999977654 8999999999
Q ss_pred HHHhhCCceEEEEe
Q 017615 138 EKHKKGDYTSIIHG 151 (368)
Q Consensus 138 ~~~~~~Gy~IIIiG 151 (368)
.+..++|.+|++=|
T Consensus 210 ~~a~~~g~~VLfEG 223 (430)
T COG0104 210 NDALDAGKRVLFEG 223 (430)
T ss_pred HHHHHcCCeEEEEc
Confidence 99999999999977
No 129
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.35 E-value=6.3e+02 Score=24.36 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHhhCCCC-ceEEecccc----------cCH----HHHHHHHhcCcEEecCCccccccccc-cCCCEE
Q 017615 37 WGVERAVQIAYEARKQFPEE-KIWITNEII----------HNP----TVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVV 100 (368)
Q Consensus 37 ~GV~RAI~~a~~~~~~~~~~-~Vy~lG~iI----------HN~----~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~V 100 (368)
-+.+-+.+.+.+.++...+. ++|..|... -.+ .+++...+.|+.+.-...+...+..+ ..|...
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~~ 196 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVDT 196 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE
Confidence 33455566666666542211 577766421 122 34566677888776543221111111 123223
Q ss_pred EEcCCC--CCHHHHHHHHhcCCcEEeCcCchhHH-------------------------HHHHHHHHhhCCceEEEEe
Q 017615 101 VLPAFG--AAVEEMVTLNNKNVQIVDTTCPWVSK-------------------------VWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 101 IIrAHG--v~~~~~~~l~~~g~~iiDaTCP~V~k-------------------------v~~~v~~~~~~Gy~IIIiG 151 (368)
| .|| ++++.++.++++|+.++ +||.+.. ....++++.+.|-.|.+--
T Consensus 197 i--~H~~~~~~~~~~~l~~~g~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~GT 270 (342)
T cd01299 197 I--EHGFLIDDETIELMKEKGIFLV--PTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVKIAFGT 270 (342)
T ss_pred E--eecCCCCHHHHHHHHHCCcEEe--CcHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEec
Confidence 4 465 58999999999999885 8887642 2244667778887655533
No 130
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.31 E-value=1.1e+02 Score=33.43 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=46.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccCC-cEEEE
Q 017615 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIV 171 (368)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~i--iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a~-~~~vv 171 (368)
+.++|+-.--+...+-+.|+++|..+ ||.. .++++++.+.||. +++||..+||+---.|-.. +.+|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d-------~~~v~~~~~~g~~-v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHD-------PDHIETLRKFGMK-VFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECC-------HHHHHHHHhcCCe-EEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 45566666667888999999988654 6654 4556667778987 5999999998864444332 44444
No 131
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.31 E-value=4.8e+02 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=18.4
Q ss_pred CCceeEEEEcCCCChHHHHHHHHHHHHHH
Q 017615 216 DLVKVGIANQTTMLKGETEEIGKLVEKTM 244 (368)
Q Consensus 216 ~~~kv~vvsQTT~~~~~~~~i~~~l~~~~ 244 (368)
.+++|||+ |.-+-.-+..|+..+++++
T Consensus 134 ~p~~IGVI--TS~tgAairDIl~~~~rR~ 160 (440)
T COG1570 134 FPKKIGVI--TSPTGAALRDILHTLSRRF 160 (440)
T ss_pred CCCeEEEE--cCCchHHHHHHHHHHHhhC
Confidence 34789997 4445566778888777643
No 132
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.25 E-value=5.6e+02 Score=26.18 Aligned_cols=92 Identities=10% Similarity=0.109 Sum_probs=52.6
Q ss_pred cccccCHHHHHHHHh--cCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEEe---C-----cCch
Q 017615 62 NEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIVD---T-----TCPW 129 (368)
Q Consensus 62 G~iIHN~~Vv~~L~~--~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~--~~~~~l~~~g~~iiD---a-----TCP~ 129 (368)
-+.-.++...+.|++ .|+.+..... +.+.+.+-|.||++. |+|+ ..+..++++|+.|+. . .+|.
T Consensus 35 ~D~~~~~~~~~~l~~~~~g~~~~~~~~---~~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~ 110 (448)
T PRK03803 35 MDSREQPPGLDTLAREFPDVELRCGGF---DCELLVQASEIIISP-GLALDTPALRAAAAMGIEVIGDIELFAREAKAPV 110 (448)
T ss_pred EeCCCCchhHHHHHhhcCCcEEEeCCC---ChHHhcCCCEEEECC-CCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCE
Confidence 344445545567887 4988864211 122233446666666 9985 467788889988873 0 1222
Q ss_pred h---------HHHHHHHHHHhhCCceEEEEecCCCcc
Q 017615 130 V---------SKVWTSVEKHKKGDYTSIIHGKYSHEE 157 (368)
Q Consensus 130 V---------~kv~~~v~~~~~~Gy~IIIiG~~~HpE 157 (368)
| +-..=...=|...|+.+.+-|+-+.|-
T Consensus 111 I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 111 IAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred EEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 2 122223334556788888888766653
No 133
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=23.82 E-value=4.5e+02 Score=22.21 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=45.4
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEE----eCcCchhHH
Q 017615 57 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV----DTTCPWVSK 132 (368)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~ii----DaTCP~V~k 132 (368)
.+++-|.| +|.-++.|.+.|++.|=..- |++.. ...+-..+..+.+++.|+..+ +..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVInlR--------pd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVINLR--------PDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE-S---------TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEECC--------CCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 47788876 88899999999999773210 11110 111223346678899999884 444455566
Q ss_pred HHHHHHHHhhCCceEEEEe
Q 017615 133 VWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 133 v~~~v~~~~~~Gy~IIIiG 151 (368)
+....+-+....+.|+++=
T Consensus 75 v~~f~~~l~~~~~Pvl~hC 93 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHC 93 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-
T ss_pred HHHHHHHHHhCCCCEEEEC
Confidence 6666666666677777764
No 134
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.32 E-value=7.2e+02 Score=24.45 Aligned_cols=106 Identities=18% Similarity=0.224 Sum_probs=57.6
Q ss_pred chHHHHHHhcCCcceecceEEEEeCCCCCccc-HHHHHHH-----------------HHHHHhh-CCCCceEEecccccC
Q 017615 7 SDIIKKLKENGFEYTWGNVKVKLAESYGFCWG-VERAVQI-----------------AYEARKQ-FPEEKIWITNEIIHN 67 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~G-V~RAI~~-----------------a~~~~~~-~~~~~Vy~lG~iIHN 67 (368)
.+.+++|+++|.++.+ +-.+..+-.. +..-++- +...+++ .+.++||++| .
T Consensus 30 ~e~l~~L~~~g~~~if------lTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG----~ 99 (269)
T COG0647 30 AEALKRLKAAGKPVIF------LTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIG----E 99 (269)
T ss_pred HHHHHHHHHcCCeEEE------EeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEEC----C
Confidence 4678888888877644 3333333333 2222211 1222232 3346899999 6
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH---HhcCCcEE----eCcCc
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL---NNKNVQIV----DTTCP 128 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l---~~~g~~ii----DaTCP 128 (368)
+...+.|++.|+..+++.+ .....-+|+-.-.=.+.+.+..+ ..+|...| |.|||
T Consensus 100 ~~l~~~l~~~G~~~~~~~~------~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p 161 (269)
T COG0647 100 EGLKEELEGAGFELVDEEE------PARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVP 161 (269)
T ss_pred cchHHHHHhCCcEEeccCC------CCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcccc
Confidence 7888999999999987431 10012233333444455554433 23555553 55664
No 135
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=23.28 E-value=92 Score=29.94 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=24.3
Q ss_pred EEeCcCchhHHHHHHHHHHhhCC-ceEEEE
Q 017615 122 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 150 (368)
Q Consensus 122 iiDaTCP~V~kv~~~v~~~~~~G-y~IIIi 150 (368)
..|-+|||=+|.|..++.+.+.| .++.++
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 37999999999999999988887 555554
No 136
>PRK10329 glutaredoxin-like protein; Provisional
Probab=23.21 E-value=3.7e+02 Score=21.09 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=47.9
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcC
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
++++-....+||..+++.++. . +-=|..=++=.++...+.|+..|...+.- +--|+..+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPv---------v~i~~~~~~-- 62 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPV---------VIAGDLSWS-- 62 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCE---------EEECCEEEe--
Confidence 456777899999999988742 1 22366667777898888898877655531 112343333
Q ss_pred CCCCHHHHHHHH
Q 017615 105 FGAAVEEMVTLN 116 (368)
Q Consensus 105 HGv~~~~~~~l~ 116 (368)
|-.|+.+++|.
T Consensus 63 -Gf~~~~l~~~~ 73 (81)
T PRK10329 63 -GFRPDMINRLH 73 (81)
T ss_pred -cCCHHHHHHHH
Confidence 88888888775
No 137
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=23.14 E-value=1.4e+02 Score=33.64 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHHHHHHHhcCcEEec
Q 017615 35 FCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIH-N~~Vv~~L~~~GV~~v~ 83 (368)
+-..|.+||+.+.++.++. ++++-+.|++-. +|.....|-.+|+.++.
T Consensus 716 ~hPaV~~~i~~vi~~a~~~-g~~vgicge~~~~~p~~~~~l~~~G~~~ls 764 (782)
T TIGR01418 716 RNPAVLRLIEMAIKAAKEH-GKKVGICGQAPSDYPEVVEFLVEEGIDSIS 764 (782)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCCHHHHHHHHHcCCCEEE
Confidence 5578999999999988875 579999999998 89999999999999886
No 138
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=22.95 E-value=1.1e+02 Score=28.88 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=35.4
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.|++++.+.+-+++++. +. ..+ -.++..+.-.|+|++|+-.|- +-..+-.++++
T Consensus 91 ~~a~~~~i~vNv~D~p~~-~~-f~~------------Pa~~~r~~l~iaIsT~G~sP~-la~~ir~~Ie~ 145 (210)
T COG1648 91 KAARERRILVNVVDDPEL-CD-FIF------------PAIVDRGPLQIAISTGGKSPV-LARLLREKIEA 145 (210)
T ss_pred HHHHHhCCceeccCCccc-Cc-eec------------ceeeccCCeEEEEECCCCChH-HHHHHHHHHHH
Confidence 788888888888877774 21 000 045545788999999998774 33344444443
No 139
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=22.72 E-value=1.5e+02 Score=32.18 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=45.5
Q ss_pred CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 32 SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
...+...|.|+|+.+.++.++. ++++.+-|++--+|..+--|-.+|+.-++
T Consensus 474 ~~~~hPav~~~i~~v~~~a~~~-g~~v~vCGe~A~dp~~~~lLlglGi~~lS 524 (575)
T PRK11177 474 YNPMSPSVLNLIKQVIDASHAE-GKWTGMCGELAGDERATLLLLGMGLDEFS 524 (575)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHCCCCeEE
Confidence 4557789999999999988865 58999999999999999999999998875
No 140
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.71 E-value=1.4e+02 Score=24.38 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=30.5
Q ss_pred CCCE-EEEcCCCCCHHHH---HHHHhcCCcEEeCcCchhHHHHHHH
Q 017615 96 KGDV-VVLPAFGAAVEEM---VTLNNKNVQIVDTTCPWVSKVWTSV 137 (368)
Q Consensus 96 ~g~~-VIIrAHGv~~~~~---~~l~~~g~~iiDaTCP~V~kv~~~v 137 (368)
++|. ++|+..|-+++.. +.++++|..+|--||.--..+.+.+
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 4554 6788899998764 4667788888888887776666544
No 141
>PRK08445 hypothetical protein; Provisional
Probab=22.62 E-value=4.6e+02 Score=26.46 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=48.6
Q ss_pred hHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccc--c---c-----CHHHHHHHHhc
Q 017615 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEI--I---H-----NPTVNKRLEEM 77 (368)
Q Consensus 8 ~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~i--I---H-----N~~Vv~~L~~~ 77 (368)
+|++.+++. ...|.-+|.+.....+.+..++-.+++....+.+|+-.+..+.+. - + +++++++|++.
T Consensus 77 eI~~~~~~a---~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeA 153 (348)
T PRK08445 77 EIDKKIEEL---LAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAK 153 (348)
T ss_pred HHHHHHHHH---HHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 444444432 223445788887777888999988888887776654455443332 1 1 38999999999
Q ss_pred CcEEec
Q 017615 78 AVQNIP 83 (368)
Q Consensus 78 GV~~v~ 83 (368)
|+.-+.
T Consensus 154 Gl~~~~ 159 (348)
T PRK08445 154 GLSSIP 159 (348)
T ss_pred CCCCCC
Confidence 997664
No 142
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=22.59 E-value=5.2e+02 Score=25.09 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecC
Q 017615 36 CWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPV 84 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~-~~~Vy~lG~iI-HN~~Vv~~L~~~GV~~v~~ 84 (368)
-.+|+.-+..+.+++++++ ....|++|.++ ++|.+++++.+.|-.+-..
T Consensus 23 ~~rv~~nt~riL~lL~~~gikATFFv~g~~~e~~p~lir~i~~~GhEIgsH 73 (265)
T TIGR03006 23 PCRVERNTDRILDLLDRHGVKATFFTLGWVAERYPELVRRIVAAGHELASH 73 (265)
T ss_pred cchHHHhHHHHHHHHHHcCCcEEEEEeccchhhCHHHHHHHHHcCCEeeec
Confidence 3455555555666666543 23699999988 8999999999999877654
No 143
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=22.59 E-value=1.2e+02 Score=30.93 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=56.7
Q ss_pred EEecccccCHHHHHHHHhcCcE---EecCCccccccccccCCCEEEEcCC-------------------CCCHHHHHHHH
Q 017615 59 WITNEIIHNPTVNKRLEEMAVQ---NIPVEEGKKQFDVVNKGDVVVLPAF-------------------GAAVEEMVTLN 116 (368)
Q Consensus 59 y~lG~iIHN~~Vv~~L~~~GV~---~v~~~~~~~~l~el~~g~~VIIrAH-------------------Gv~~~~~~~l~ 116 (368)
.--|-.||-+...++++..|+. +|++ -..||++.| |+.|...+++.
T Consensus 70 iG~GvVv~p~~L~~Ei~~L~~~~rL~Is~------------ra~li~p~H~~~D~~~E~~~~~IGTT~rGIGpaY~dk~~ 137 (333)
T PRK04293 70 IGAGVLVDPEVLLKEVEELNVGGRVFVDY------------RCGIIEEKHVEEDRSDEHLSKKIGSTGTGCGPANADRVL 137 (333)
T ss_pred ECCcEEECHHHHHHHHHHhCCCCCEEEcC------------CCccCCHHHHHHhHHhHHhCCCCCCCCCcccHhhHHHHh
Confidence 3456677777888888888751 2221 223344433 78899999999
Q ss_pred hcCCcEEeCc--CchhHHHHHHHHHHhhCCceEEEEe
Q 017615 117 NKNVQIVDTT--CPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 117 ~~g~~iiDaT--CP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
++|+.+.|.. =|+|..+.....++.++|..|++=|
T Consensus 138 R~gir~~~~~~l~~~v~d~~~~l~~al~~gk~vLfEG 174 (333)
T PRK04293 138 RRLKLAKDVEELEKYLTDVPEEVNEALDRGENVLIEG 174 (333)
T ss_pred hhhhhccchhhhccceecHHHHHHHHHHCCCeEEEEe
Confidence 9999997732 3467777777777788898888866
No 144
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=22.55 E-value=2.2e+02 Score=31.06 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=105.7
Q ss_pred ccchHHHHHHhcCC-------cceecceEEEEeCCCCCcccH----------HHHHHHHHHHHhhCCCCceEEecccccC
Q 017615 5 YTSDIIKKLKENGF-------EYTWGNVKVKLAESYGFCWGV----------ERAVQIAYEARKQFPEEKIWITNEIIHN 67 (368)
Q Consensus 5 y~~~~~~~~~~~~~-------~~~~g~mkI~lA~~~GFC~GV----------~RAI~~a~~~~~~~~~~~Vy~lG~iIHN 67 (368)
--|++|.+.|..|. +.+.-.|-|..|.. -+|.|= .+-|+.|...-.+ .-.==+|=|--|
T Consensus 9 IAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADe-av~ig~a~~~~SYL~~~~I~~aa~~tgaq---aihPGYGFLSEn 84 (670)
T KOG0238|consen 9 IACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADE-AVCIGPAPAAQSYLRMDKIIDAAKRTGAQ---AIHPGYGFLSEN 84 (670)
T ss_pred eeehhhhHHHHhCCeEEEEEccCccccceeecccc-eeecCCCchhhhhhhHHHHHHHHHhcCCc---eecCCccccccc
Confidence 45789999999984 33445688888754 477773 2333333322111 001136788899
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceE
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~I 147 (368)
....+.+++.|+.|+.. +++ .||.-|.--.-++.+++.|..+|-.--..........+...+=||.|
T Consensus 85 ~~Fae~c~~~Gi~FiGP-----------~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPv 151 (670)
T KOG0238|consen 85 AEFAELCEDAGITFIGP-----------PPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPV 151 (670)
T ss_pred hHHHHHHHHcCCeEECC-----------CHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcE
Confidence 99999999999999962 322 48888887777778888899998777777777777777778889999
Q ss_pred EEEecCCCcceeeecccCCcE-EEEcChhhHHHhh
Q 017615 148 IIHGKYSHEETVATASFAGKY-IIVKNMKEAEYVC 181 (368)
Q Consensus 148 IIiG~~~HpEv~gi~g~a~~~-~vv~~~~e~~~~~ 181 (368)
.| +++.|=.++. -++.+++|.+...
T Consensus 152 Mi---------Ka~~GGGGkGMria~~~~ef~~~~ 177 (670)
T KOG0238|consen 152 MI---------KATAGGGGKGMRIAWSEEEFEEGL 177 (670)
T ss_pred EE---------EeccCCCCcceEeecChHHHHHHH
Confidence 87 4565555554 5778888876543
No 145
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.52 E-value=3.3e+02 Score=26.21 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEe
Q 017615 108 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 151 (368)
Q Consensus 108 ~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG 151 (368)
+.+.|+.+++.+ .+.=+.||-+..+.+..+++.++|++||.+.
T Consensus 43 ~~~~y~~~~~~~-~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~ 85 (275)
T TIGR00762 43 PEEFYEKLKESK-ELPKTSQPSPGEFLELYEKLLEEGDEVLSIH 85 (275)
T ss_pred HHHHHHHHHhcC-CCCCcCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 356677775533 3556999999999999999999999998886
No 146
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=22.45 E-value=1.1e+02 Score=33.52 Aligned_cols=148 Identities=17% Similarity=0.193 Sum_probs=104.1
Q ss_pred ccchHHHHHHhcCC-------cceecceEEEEeCCCCCcccH----------HHHHHHHHHHHhh--CCCCceEEecccc
Q 017615 5 YTSDIIKKLKENGF-------EYTWGNVKVKLAESYGFCWGV----------ERAVQIAYEARKQ--FPEEKIWITNEII 65 (368)
Q Consensus 5 y~~~~~~~~~~~~~-------~~~~g~mkI~lA~~~GFC~GV----------~RAI~~a~~~~~~--~~~~~Vy~lG~iI 65 (368)
--|++|.+.|..|. +.+...|-|.+|.. -|+-|= ++-|+.|.++=.+ +| =||=|-
T Consensus 13 IAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADE-Av~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP-----GYGFLS 86 (645)
T COG4770 13 IACRVIRTARDLGIRTVAVYSDADADALHVRMADE-AVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP-----GYGFLS 86 (645)
T ss_pred hhHHHHHHHHHcCCceEEEEecCCCCchhhhhcch-hhhcCCCchhhhhccHHHHHHHHHHhCcccccC-----Cccccc
Confidence 34788999998883 33344566655533 234442 2222323221111 22 267888
Q ss_pred cCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCc
Q 017615 66 HNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145 (368)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy 145 (368)
-|+...+.+++-|+.||-. ++++ |||-|--..-+..+.+.|..+|=.+=.-+...-..++...+=||
T Consensus 87 ENa~FA~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGy 153 (645)
T COG4770 87 ENADFAQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGY 153 (645)
T ss_pred cCHHHHHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCC
Confidence 8999999999999999963 2344 89999888888888999999999998888888888888888899
Q ss_pred eEEEEecCCCcceeeecccCCcE-EEEcChhhHHHh
Q 017615 146 TSIIHGKYSHEETVATASFAGKY-IIVKNMKEAEYV 180 (368)
Q Consensus 146 ~IIIiG~~~HpEv~gi~g~a~~~-~vv~~~~e~~~~ 180 (368)
.|.| ++-.|=.++. -++.+++|+...
T Consensus 154 PVlI---------KAsaGGGGKGMRvv~~~~e~~e~ 180 (645)
T COG4770 154 PVLI---------KASAGGGGKGMRVVETPEEFAEA 180 (645)
T ss_pred cEEE---------EeccCCCCCceEeecCHHHHHHH
Confidence 9997 3444444554 588999988654
No 147
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=22.35 E-value=89 Score=25.24 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhCCceEEEEecCCC
Q 017615 131 SKVWTSVEKHKKGDYTSIIHGKYSH 155 (368)
Q Consensus 131 ~kv~~~v~~~~~~Gy~IIIiG~~~H 155 (368)
+.||+.++.+-+.||+|-.+.++++
T Consensus 34 taVwK~Iq~Lr~~G~~I~s~~~kGY 58 (79)
T COG1654 34 TAVWKHIQQLREEGVDIESVRGKGY 58 (79)
T ss_pred HHHHHHHHHHHHhCCceEecCCCce
Confidence 6799999999999999988876543
No 148
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.35 E-value=4.6e+02 Score=23.93 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=42.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHH-hhhhcCCEEEEe----------
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVV---------- 288 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~e-La~~~vD~miVV---------- 288 (368)
++++.. +++..-|..+.+-+++...+. +.....-.+.+.++- ...+.|....+ |.+..+|.+|+.
T Consensus 2 Ig~i~~-~~~~~f~~~~~~gi~~~a~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~ 77 (274)
T cd06311 2 IGVSIP-AADHGWTAGIVWHAQAAAKKL-EAAYPDVEFILVTAS--NDTEQQNAQQDLLINRKIDALVILPFESAPLTQP 77 (274)
T ss_pred eeeecc-CCCCcHHHHHHHHHHHHHHHh-hhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHH
Confidence 344443 345555666776666543322 100001223333322 22345544444 654579999998
Q ss_pred -hhhhccCCCeEEeCCC
Q 017615 289 -EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~ 304 (368)
+.+++.|.|...+++.
T Consensus 78 i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 78 VAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHCCCeEEEEcCC
Confidence 3345678899988864
No 149
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=22.22 E-value=3.1e+02 Score=29.45 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCC
Q 017615 109 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 154 (368)
Q Consensus 109 ~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~ 154 (368)
......++..|+.+.....|.-+ ...++++.++|+.++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~~K--~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPDDK--AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChHHH--HHHHHHHHHcCCEEEEEeCCC
Confidence 34455566677766655555422 356677778899999999863
No 150
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.21 E-value=5.8e+02 Score=22.98 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=43.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe---------h
Q 017615 220 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV---------E 289 (368)
Q Consensus 220 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV---------e 289 (368)
|+++.-. ++..-|..+..-+.+...+. +..+.++++=.. .++| +.++.|.+..+|.+|++ +
T Consensus 2 i~vv~p~-~~~~~~~~~~~~i~~~~~~~------g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~ 72 (268)
T cd06273 2 IGAIVPT-LDNAIFARVIQAFQETLAAH------GYTLLVASSGYD--LDREYAQARKLLERGVDGLALIGLDHSPALLD 72 (268)
T ss_pred eEEEeCC-CCCchHHHHHHHHHHHHHHC------CCEEEEecCCCC--HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH
Confidence 4455533 33344666666665533322 223444433222 2334 34455665679999998 5
Q ss_pred hhhccCCCeEEeCCCC
Q 017615 290 IAEDRGIPSYWIDSEK 305 (368)
Q Consensus 290 ia~~~~~~t~~Ie~~~ 305 (368)
.+++.+.|..++.+..
T Consensus 73 ~l~~~~iPvv~~~~~~ 88 (268)
T cd06273 73 LLARRGVPYVATWNYS 88 (268)
T ss_pred HHHhCCCCEEEEcCCC
Confidence 5567789999887643
No 151
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=22.11 E-value=2.3e+02 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.451 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCcHHHHHHHHHHHHhhhhhh
Q 017615 331 KGQITIGITSGASTPDKAVEDVLKKVFEIKREE 363 (368)
Q Consensus 331 ~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~~ 363 (368)
.+.-.||||+|...|- +-..+-+.|+++.+++
T Consensus 116 ~g~l~iaIsT~G~sP~-la~~lr~~ie~~~~~~ 147 (202)
T PRK06718 116 RGKLTISVSTDGASPK-LAKKIRDELEALYDES 147 (202)
T ss_pred cCCeEEEEECCCCChH-HHHHHHHHHHHHcchh
Confidence 3678899999888884 4466777777655443
No 152
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=22.01 E-value=8.7e+02 Score=24.88 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=54.7
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHH----HHh-hCC--CCceEEecccccCHH----HHHHHHhcCcEEecCCcccccccc
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYE----ARK-QFP--EEKIWITNEIIHNPT----VNKRLEEMAVQNIPVEEGKKQFDV 93 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~----~~~-~~~--~~~Vy~lG~iIHN~~----Vv~~L~~~GV~~v~~~~~~~~l~e 93 (368)
..|+.+..-||..+...+.+.+.+ .+. ..+ ++.+-.+|+ +|+. +..-|++.|+.++.-.++. ++++
T Consensus 116 ~pVi~v~tpgf~g~~~~G~~~~~~alv~~~~~~~~~~~~~vniiG~--~~~~d~~elk~lL~~~Gi~v~~~lpd~-~~~e 192 (407)
T TIGR01279 116 VPVLFAPASGLDYTFTQGEDTVLAALVPFCPEAPASEQRALVLVGS--VNDIVADQLRLELKQLGIPVVGFLPAS-HFTE 192 (407)
T ss_pred CCEEEeeCCCccccHHHHHHHHHHHHHHhhccccCCCCCcEEEEec--cChhhHHHHHHHHHHcCCeEEEEeCCC-Ccch
Confidence 568888888997544444444433 222 111 246888997 5663 4445688899886322111 2333
Q ss_pred cc--CCCEEEEcCCCCCHHHHHHHHh-cCCcEEeCcCch
Q 017615 94 VN--KGDVVVLPAFGAAVEEMVTLNN-KNVQIVDTTCPW 129 (368)
Q Consensus 94 l~--~g~~VIIrAHGv~~~~~~~l~~-~g~~iiDaTCP~ 129 (368)
++ .+.+.+.--+......-+.|++ .|+..+...-|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~Pi 231 (407)
T TIGR01279 193 LPVIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPF 231 (407)
T ss_pred hhhcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCc
Confidence 43 1333322222222245566655 688877776665
No 153
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=21.82 E-value=4.1e+02 Score=22.82 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=10.9
Q ss_pred HHHHHhhC-CceEEEEecC
Q 017615 136 SVEKHKKG-DYTSIIHGKY 153 (368)
Q Consensus 136 ~v~~~~~~-Gy~IIIiG~~ 153 (368)
..+++.++ ...++.+||.
T Consensus 153 ~~~~~~~~~~~~~i~iGD~ 171 (188)
T TIGR01489 153 VIHKLSEPKYQHIIYIGDG 171 (188)
T ss_pred HHHHHHhhcCceEEEECCC
Confidence 34444444 6778888864
No 154
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.64 E-value=2.9e+02 Score=24.53 Aligned_cols=35 Identities=9% Similarity=0.196 Sum_probs=24.2
Q ss_pred CCcEEEEeecCCCcHHHHHHHHHHHHhhhhhhhhhc
Q 017615 332 GQITIGITSGASTPDKAVEDVLKKVFEIKREEALQL 367 (368)
Q Consensus 332 ~~~~VGITAGASTP~~lI~eVi~~l~~~~~~~~~~~ 367 (368)
+.-.||||+|...| .+-..+-++|+++.++..-+|
T Consensus 117 ~~l~iaisT~G~sP-~la~~lr~~ie~~l~~~~~~~ 151 (157)
T PRK06719 117 DEYVVTISTSGKDP-SFTKRLKQELTSILPKLIKKI 151 (157)
T ss_pred CCeEEEEECCCcCh-HHHHHHHHHHHHHhhHHHHHH
Confidence 56789999888766 466677777777666544433
No 155
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=21.57 E-value=5.7e+02 Score=27.25 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=71.8
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCH-HHHHHHHhcCcEEecCCccc--cccccccCCCEE
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNP-TVNKRLEEMAVQNIPVEEGK--KQFDVVNKGDVV 100 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~-~Vv~~L~~~GV~~v~~~~~~--~~l~el~~g~~V 100 (368)
+-+|+.|+. -+-|-+++.+...+.+++.|.---.++--. .+++.|+++|+.+++++=+. -+++.- +.+++
T Consensus 78 Gg~vy~A~~------aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~~~-~PsHI 150 (459)
T COG1139 78 GGHVYFAKD------AEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLAGE-PPSHI 150 (459)
T ss_pred CCEEEEeCC------HHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhcCC-CCcce
Confidence 457888976 589999999988765445544433333322 35678999999999862111 122221 24689
Q ss_pred EEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCc
Q 017615 101 VLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY 145 (368)
Q Consensus 101 IIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy 145 (368)
|.+|=.-+++...++-+..+....- +-...+-..||++-++-|
T Consensus 151 V~PAlH~~reqIa~if~ekl~~~~~--~~~eel~~~aR~~lR~kf 193 (459)
T COG1139 151 VAPALHKNREQIAEIFKEKLGYEGE--DTPEELTAAAREFLREKF 193 (459)
T ss_pred eccccccCHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 9999888888777665544443322 556666667777666544
No 156
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=21.56 E-value=4.3e+02 Score=21.15 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=41.6
Q ss_pred ccccCcccHHHHHHHHHHHHhhhhcCCEEEEe-----------hhhhccC---CCeEEeCCCCCcCCCCcchhhhccchh
Q 017615 257 FISFNTICDATQERQDAMYKMVEEKVDLILVV-----------EIAEDRG---IPSYWIDSEKRIGPGNKIAYKLMHGEL 322 (368)
Q Consensus 257 ~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV-----------eia~~~~---~~t~~Ie~~~eL~~~~~~~~~~~~~~~ 322 (368)
+.++.+.|..-+.-...+.+|++ +.+-+.++ ++|++.+ .||+.+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~-~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~--------------------- 77 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSR-TCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLF--------------------- 77 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHH-HCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE---------------------
Confidence 34678888888877888888874 43333233 3444433 334322
Q ss_pred hhhcccccCCCcEEEEeecCCCcHHHHHHHHH
Q 017615 323 VEKENWLPKGQITIGITSGASTPDKAVEDVLK 354 (368)
Q Consensus 323 ~~~~~~l~~~~~~VGITAGASTP~~lI~eVi~ 354 (368)
| ++.+.++-..|++ |..|.+.|..
T Consensus 78 ------~-~~G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 78 ------Y-KDGEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred ------E-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence 2 3446688888855 7777777754
No 157
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=21.21 E-value=3.5e+02 Score=27.11 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=44.0
Q ss_pred HHhcCCcceecc---eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEec
Q 017615 13 LKENGFEYTWGN---VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 13 ~~~~~~~~~~g~---mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
+|+.|+++..|. +-+++- =|-|.+-|.+++++.+++ +=-+|+-|+ +.+.|.+.|++.=.
T Consensus 115 iR~~GvplV~G~IPGva~ivG----~a~~~e~~~~I~~e~q~r--~~lv~l~G~------i~~q~~E~G~~lg~ 176 (287)
T cd01917 115 VRGLGIKMVDWTIPGEAVILG----RAKDSKALKKIVDDLMGR--GFMLFLCDE------IVEQLLEENVKLGL 176 (287)
T ss_pred HHHcCCceecCCCCeEEEEEe----cCCChHHHHHHHHHHHHC--CcEEEEecH------HHHHHHHcCCeecc
Confidence 466678888884 444443 334999999999998875 235888894 77899999988664
No 158
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.18 E-value=4.8e+02 Score=25.82 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=65.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
.+++++.+++-+ .-|..+.+-+++... .++ -++.+... -......| +.+..|.++.+|.++|.
T Consensus 24 ~~i~~v~k~~~~-pf~~~~~~Gi~~aa~-~~G-----~~v~~~~~-~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~ 95 (336)
T PRK15408 24 ERIAFIPKLVGV-GFFTSGGNGAKEAGK-ELG-----VDVTYDGP-TEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLC 95 (336)
T ss_pred cEEEEEECCCCC-HHHHHHHHHHHHHHH-HhC-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHH
Confidence 589999987765 447777776665322 222 22332111 13334555 45556656789999998
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCCCcchhhh-----ccchh--hhhcccccCCCcEEEEeecCCCc
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPGNKIAYKL-----MHGEL--VEKENWLPKGQITIGITSGASTP 345 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-----~~~~~--~~~~~~l~~~~~~VGITAGASTP 345 (368)
+-+++.|.|...+++...-.. ...|-- ..++. ......+..+..+|++-.|..+.
T Consensus 96 ~~l~~a~~~gIpVV~~d~~~~~~~--~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~ 160 (336)
T PRK15408 96 PALKRAMQRGVKVLTWDSDTKPEC--RSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTV 160 (336)
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcc--ceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCC
Confidence 456678899999987532111 111100 11111 11122342267899999887653
No 159
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=21.12 E-value=54 Score=30.21 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=12.3
Q ss_pred cCCCEEEEcCCCCC
Q 017615 95 NKGDVVVLPAFGAA 108 (368)
Q Consensus 95 ~~g~~VIIrAHGv~ 108 (368)
..||+||.++||+.
T Consensus 6 k~Gd~VVYP~HGvG 19 (166)
T COG1329 6 KIGDHVVYPAHGVG 19 (166)
T ss_pred cCCCEEEecCCCce
Confidence 45999999999995
No 160
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=21.05 E-value=5.9e+02 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhcCCcEEe-------CcCchhHHHHHHHHHHhhCCceEEEE
Q 017615 107 AAVEEMVTLNNKNVQIVD-------TTCPWVSKVWTSVEKHKKGDYTSIIH 150 (368)
Q Consensus 107 v~~~~~~~l~~~g~~iiD-------aTCP~V~kv~~~v~~~~~~Gy~IIIi 150 (368)
.++..++.+++.|+.+++ ...|-+..+.+.+.+..+.|.-|+++
T Consensus 108 ~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~H 158 (191)
T TIGR02764 108 FNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLH 158 (191)
T ss_pred CCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 578889999999999854 34577777877777777888766655
No 161
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=21.04 E-value=67 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceEEecccccCHHHHHHHHhcCcE
Q 017615 57 KIWITNEIIHNPTVNKRLEEMAVQ 80 (368)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~ 80 (368)
--|+-||-+||..|++.|+..||.
T Consensus 376 eyYmCGPp~mNasvikmL~dlGVE 399 (410)
T COG2871 376 EYYMCGPPLMNASVIKMLKDLGVE 399 (410)
T ss_pred eEEeeCcchhhHHHHHHHHhcCcc
Confidence 489999999999999999999985
No 162
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=20.84 E-value=5.1e+02 Score=27.16 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhCCC-CceEEe--cccccCH----HHHHHHHhc--CcEEecCCccc---cccccccC-C-CEEEEcCC
Q 017615 40 ERAVQIAYEARKQFPE-EKIWIT--NEIIHNP----TVNKRLEEM--AVQNIPVEEGK---KQFDVVNK-G-DVVVLPAF 105 (368)
Q Consensus 40 ~RAI~~a~~~~~~~~~-~~Vy~l--G~iIHN~----~Vv~~L~~~--GV~~v~~~~~~---~~l~el~~-g-~~VIIrAH 105 (368)
+.+++.+.+.....++ +.|..- ||--.|+ ..+..+++. |+.+-=+.++. +.++++.+ | |.|.|+-+
T Consensus 63 ee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islk 142 (442)
T TIGR01290 63 EQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITIN 142 (442)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEecc
Confidence 4667777666554321 223333 5555554 344555665 77654333332 12333322 2 67999999
Q ss_pred CCCHHHHHHH------HhcCCcEEeCcCchhHHHHHHHHHHhhCCce
Q 017615 106 GAAVEEMVTL------NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 146 (368)
Q Consensus 106 Gv~~~~~~~l------~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~ 146 (368)
|+.|+.++++ +.+.+.-.++.-.+..++.+-++.+.+.|..
T Consensus 143 a~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~ 189 (442)
T TIGR01290 143 AIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL 189 (442)
T ss_pred CCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe
Confidence 9999999876 2223344555555566777777888888765
No 163
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=20.78 E-value=4.9e+02 Score=25.20 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=40.9
Q ss_pred CceEEecccccCHHHH----HHHHhcCcEEecCCccc---cccccccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEe
Q 017615 56 EKIWITNEIIHNPTVN----KRLEEMAVQNIPVEEGK---KQFDVVNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVD 124 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv----~~L~~~GV~~v~~~~~~---~~l~el~~g~~V-IIrAHGv~~~~~~~l---~~~g~~iiD 124 (368)
++||.+| +=-.--|- .+|...|+.+.--.+.. ..+..+.++|.| +|+--|-++++.+.+ +++|.+||=
T Consensus 131 ~rI~~~G-~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIa 209 (281)
T COG1737 131 RRIYFFG-LGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIA 209 (281)
T ss_pred CeEEEEE-echhHHHHHHHHHHHHHcCCceeEecchHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEE
Confidence 4688888 33333222 24556677665432211 123345567764 588889998887654 344444444
Q ss_pred CcCchhHH
Q 017615 125 TTCPWVSK 132 (368)
Q Consensus 125 aTCP~V~k 132 (368)
-|.....-
T Consensus 210 iT~~~~sp 217 (281)
T COG1737 210 ITDSADSP 217 (281)
T ss_pred EcCCCCCc
Confidence 44443333
No 164
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=3.2e+02 Score=26.90 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHH-HHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCc-eEEEE
Q 017615 73 RLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE-MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY-TSIIH 150 (368)
Q Consensus 73 ~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~-~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy-~IIIi 150 (368)
.+++.||.++. |.-.-+| ..-+.-=-++++. +.+... .-....+.||-+.-.-+.-+++.++|| .||.+
T Consensus 17 ~~~~~~I~vlP-------L~V~~~g-~~y~D~~~l~~~~~~~~~~~-~~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 17 LAEKLDITVLP-------LSVIIDG-ESYFDGVELSPDQFYYEMAE-KGELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred HHHhCCeEEEe-------EEEEECC-EEeeccccCCHHHHHHHHHh-cCCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 34567888874 2211122 2222334456663 545444 445567999999999999999999999 56655
Q ss_pred e
Q 017615 151 G 151 (368)
Q Consensus 151 G 151 (368)
-
T Consensus 88 ~ 88 (282)
T COG1307 88 H 88 (282)
T ss_pred E
Confidence 4
No 165
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=20.65 E-value=5.9e+02 Score=24.68 Aligned_cols=93 Identities=10% Similarity=0.071 Sum_probs=58.9
Q ss_pred HHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH------
Q 017615 43 VQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------ 115 (368)
Q Consensus 43 I~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~~~~~l------ 115 (368)
-.++...++. +-.|+.+. .|+...+.|.+.|+....+. .++ ...|.||+-- --+..+...+
T Consensus 14 ~~mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s~------~~~~~~aDvVi~~v-p~~~~~~~vl~~~~~i 81 (296)
T PRK15461 14 SPMASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAASP------AQAAAGAEFVITML-PNGDLVRSVLFGENGV 81 (296)
T ss_pred HHHHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCCH------HHHHhcCCEEEEec-CCHHHHHHHHcCcccH
Confidence 3455555553 23576664 48889999999998766532 222 3345554432 2222222221
Q ss_pred ---HhcCCcEEeCcCchhHHHHHHHHHHhhCCceE
Q 017615 116 ---NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (368)
Q Consensus 116 ---~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~I 147 (368)
...|..+||.+--.....++.++.+.+.|...
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM 116 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 13577889999999999999999999988663
No 166
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.56 E-value=75 Score=26.86 Aligned_cols=33 Identities=0% Similarity=0.097 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEec
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITN 62 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG 62 (368)
++|++|.|-+||-|...|+++..- +...|++++
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G-----~~~~i~~i~ 34 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFG-----EQNNVGAVP 34 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcC-----CcCCeEEEE
Confidence 479999999999999999998842 123588888
No 167
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.52 E-value=4.1e+02 Score=21.37 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCcEEecC--Ccccc--c--cc-cccCCCEEEEc----CCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHH
Q 017615 68 PTVNKRLEEMAVQNIPV--EEGKK--Q--FD-VVNKGDVVVLP----AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 136 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~--~~~~~--~--l~-el~~g~~VIIr----AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~ 136 (368)
++..+.+++.|..++-. .++.. . +. .+..-|.||+. +|+....+.+.+++.|+.++=+-..-+..+.+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERA 92 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 44556667778776654 11110 1 11 23334666654 688889999999999999986665555555555
Q ss_pred HHH
Q 017615 137 VEK 139 (368)
Q Consensus 137 v~~ 139 (368)
..+
T Consensus 93 l~~ 95 (97)
T PF10087_consen 93 LER 95 (97)
T ss_pred HHh
Confidence 443
No 168
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=20.45 E-value=7.1e+02 Score=23.27 Aligned_cols=79 Identities=10% Similarity=0.182 Sum_probs=47.5
Q ss_pred CceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe-------
Q 017615 217 LVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 217 ~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV------- 288 (368)
.+.++++.- +++-.-|..+...+.....+. + -.+.++++--.. ++| ..+..|....+|.+|+.
T Consensus 26 ~~~I~vi~~-~~~~~f~~~~~~~i~~~~~~~-G-----~~~~~~~~~~d~--~~~~~~~~~l~~~~~dgiii~~~~~~~~ 96 (295)
T PRK10653 26 KDTIALVVS-TLNNPFFVSLKDGAQKEADKL-G-----YNLVVLDSQNNP--AKELANVQDLTVRGTKILLINPTDSDAV 96 (295)
T ss_pred CCeEEEEec-CCCChHHHHHHHHHHHHHHHc-C-----CeEEEecCCCCH--HHHHHHHHHHHHcCCCEEEEcCCChHHH
Confidence 357888874 455566788887777643332 2 234444433222 333 33445554679988877
Q ss_pred ----hhhhccCCCeEEeCCC
Q 017615 289 ----EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~ 304 (368)
+.+++.+.|...+++.
T Consensus 97 ~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 97 GNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHCCCCEEEEccC
Confidence 3445578899988764
No 169
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=20.44 E-value=1.2e+02 Score=25.17 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=35.2
Q ss_pred ccccchHHHHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEe
Q 017615 3 QEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWIT 61 (368)
Q Consensus 3 ~~y~~~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~l 61 (368)
+.|=.++++.|++.|.++..+.|.=.+=...-=|+. +++.+.+++-+.+-.+|++.
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IEGe~dev~~---~i~~~~e~~~~~G~~Rv~t~ 73 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIEGDLDELFE---AIKAIHEAVLEKGSDRVYTS 73 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEecCHHHHHH---HHHHHHHHHHHcCCCeEEEE
Confidence 568889999999999999999986444433333333 44444444433223456664
No 170
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=20.25 E-value=9.3e+02 Score=24.57 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCceeEEEEcCCC--ChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe-----
Q 017615 216 DLVKVGIANQTTM--LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV----- 288 (368)
Q Consensus 216 ~~~kv~vvsQTT~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV----- 288 (368)
+-++++++-+.-. +....+++.+.+++ .+ +.+.----..+.+=|.+++.|. +++|++++-
T Consensus 158 nak~Igv~Y~p~E~ns~~l~eelk~~A~~-----~G-------l~vve~~v~~~ndi~~a~~~l~-g~~d~i~~p~dn~i 224 (322)
T COG2984 158 NAKSIGVLYNPGEANSVSLVEELKKEARK-----AG-------LEVVEAAVTSVNDIPRAVQALL-GKVDVIYIPTDNLI 224 (322)
T ss_pred CCeeEEEEeCCCCcccHHHHHHHHHHHHH-----CC-------CEEEEEecCcccccHHHHHHhc-CCCcEEEEecchHH
Confidence 3478998887764 55556666555543 22 3333333334567788889997 899999998
Q ss_pred --------hhhhccCCCeE
Q 017615 289 --------EIAEDRGIPSY 299 (368)
Q Consensus 289 --------eia~~~~~~t~ 299 (368)
+.+.+.+.|-|
T Consensus 225 ~s~~~~l~~~a~~~kiPli 243 (322)
T COG2984 225 VSAIESLLQVANKAKIPLI 243 (322)
T ss_pred HHHHHHHHHHHHHhCCCee
Confidence 55666666555
No 171
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.11 E-value=8.2e+02 Score=24.52 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=63.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc------cCC
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV------NKG 97 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el------~~g 97 (368)
.|-.+...|.-||-|++.|++.+.+... .++|-+- +-|.......-+.|+-.|.=.+ .+.+++ -++
T Consensus 177 D~vLIkdNHi~~~G~i~~av~~~r~~~~---~~kIeVE---vetleea~eA~~aGaDiImLDn--mspe~l~~av~~~~~ 248 (294)
T PRK06978 177 DGILIKENHIAAAGGVGAALDAAFALNA---GVPVQIE---VETLAQLETALAHGAQSVLLDN--FTLDMMREAVRVTAG 248 (294)
T ss_pred ceEEEeHHHHHHhCCHHHHHHHHHHhCC---CCcEEEE---cCCHHHHHHHHHcCCCEEEECC--CCHHHHHHHHHhhcC
Confidence 3666778999999999999999987443 2345554 3466666666678877765211 011111 123
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeCcCch
Q 017615 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (368)
Q Consensus 98 ~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~ 129 (368)
..++-=|=|++++-.....+.|..+|....++
T Consensus 249 ~~~lEaSGGIt~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 249 RAVLEVSGGVNFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred CeEEEEECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 44555566788888888888888888777664
No 172
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=20.06 E-value=2.8e+02 Score=26.03 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=36.4
Q ss_pred cCHHHHHHHHhcCcEEec--CCccccccc----cccCCCEEEEc--CCCCCHHHHHHHHhcCCcEEe
Q 017615 66 HNPTVNKRLEEMAVQNIP--VEEGKKQFD----VVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 124 (368)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~--~~~~~~~l~----el~~g~~VIIr--AHGv~~~~~~~l~~~g~~iiD 124 (368)
+.+.+.+.|+++|+.+.- ..+..-.++ ++.+-|.|++| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 467888999999988642 100000111 22233778888 566555556677788988885
Done!