Query 017615
Match_columns 368
No_of_seqs 120 out of 1064
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 9.6E-94 3.3E-98 692.5 28.1 268 24-362 1-284 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 2E-93 6.9E-98 697.8 28.2 274 22-361 10-299 (328)
3 3dnf_A ISPH, LYTB, 4-hydroxy-3 93.5 1.2 4.1E-05 43.0 13.6 169 36-242 96-280 (297)
4 3szu_A ISPH, 4-hydroxy-3-methy 91.8 2.3 8E-05 41.5 13.3 172 36-242 108-296 (328)
5 3d8t_A Uroporphyrinogen-III sy 77.2 37 0.0013 31.2 13.0 117 6-127 44-187 (286)
6 2xdq_A Light-independent proto 76.7 38 0.0013 33.4 13.8 103 25-130 129-275 (460)
7 3jx9_A Putative phosphoheptose 73.8 10 0.00035 33.3 7.8 90 39-159 24-119 (170)
8 3o3m_B Beta subunit 2-hydroxya 72.8 2 6.9E-05 42.1 3.2 53 32-84 198-258 (385)
9 2k1g_A Lipoprotein SPR; soluti 71.3 4.2 0.00014 34.5 4.5 76 1-104 1-78 (135)
10 1s3l_A Hypothetical protein MJ 71.1 15 0.00051 32.0 8.2 63 17-84 17-83 (190)
11 1wcw_A Uroporphyrinogen III sy 70.7 54 0.0018 29.2 12.1 117 6-127 19-162 (261)
12 3aek_A Light-independent proto 68.6 35 0.0012 33.8 11.2 103 24-129 148-260 (437)
13 3mw8_A Uroporphyrinogen-III sy 63.3 28 0.00095 30.9 8.5 121 4-129 11-158 (240)
14 3dbi_A Sugar-binding transcrip 60.4 99 0.0034 28.1 12.0 129 218-357 62-205 (338)
15 3p9z_A Uroporphyrinogen III co 59.5 17 0.00057 32.5 6.3 70 55-129 67-148 (229)
16 3k4h_A Putative transcriptiona 57.0 1E+02 0.0034 27.0 13.5 131 218-358 9-156 (292)
17 2h3h_A Sugar ABC transporter, 56.8 1.1E+02 0.0037 27.4 11.7 130 219-359 3-149 (313)
18 3k9c_A Transcriptional regulat 56.2 50 0.0017 29.4 8.9 126 218-357 13-149 (289)
19 3m9w_A D-xylose-binding peripl 56.1 1E+02 0.0035 27.5 11.2 130 218-358 3-148 (313)
20 3qk7_A Transcriptional regulat 55.9 75 0.0026 28.3 10.1 131 218-359 7-152 (294)
21 3huu_A Transcription regulator 52.7 1.3E+02 0.0043 26.8 13.1 132 218-359 23-170 (305)
22 3mmz_A Putative HAD family hyd 51.4 48 0.0016 27.8 7.6 67 70-155 47-113 (176)
23 3trj_A Phosphoheptose isomeras 50.4 82 0.0028 27.4 9.2 23 94-116 112-135 (201)
24 2yva_A DNAA initiator-associat 48.8 64 0.0022 27.3 8.1 22 94-115 107-129 (196)
25 4es6_A Uroporphyrinogen-III sy 48.3 50 0.0017 29.5 7.6 115 6-125 18-162 (254)
26 3eag_A UDP-N-acetylmuramate:L- 48.1 51 0.0018 30.9 8.0 62 56-123 29-94 (326)
27 2h1v_A Ferrochelatase; rossman 47.4 38 0.0013 32.1 6.9 92 36-143 119-210 (310)
28 1vq8_F 50S ribosomal protein L 47.3 38 0.0013 27.5 6.1 52 289-359 66-119 (120)
29 3egc_A Putative ribose operon 46.8 1.5E+02 0.0051 26.0 12.2 129 218-357 9-149 (291)
30 3gv0_A Transcriptional regulat 45.5 1.6E+02 0.0054 25.9 12.2 131 218-358 9-152 (288)
31 3re1_A Uroporphyrinogen-III sy 45.0 59 0.002 29.5 7.6 116 5-125 25-170 (269)
32 3hcn_A Ferrochelatase, mitocho 44.8 1E+02 0.0036 30.0 9.7 92 36-143 132-226 (359)
33 2xvy_A Chelatase, putative; me 44.4 84 0.0029 28.4 8.6 94 8-109 52-158 (269)
34 3brq_A HTH-type transcriptiona 43.8 1.6E+02 0.0055 25.5 11.6 124 218-352 20-158 (296)
35 3qfa_C Thioredoxin; protein-pr 43.2 1.1E+02 0.0037 23.4 8.3 90 225-353 14-113 (116)
36 3ff4_A Uncharacterized protein 42.9 36 0.0012 27.9 5.3 31 100-131 86-116 (122)
37 1jr2_A Uroporphyrinogen-III sy 42.7 61 0.0021 29.6 7.4 114 7-125 38-186 (286)
38 3obb_A Probable 3-hydroxyisobu 42.3 1.4E+02 0.0046 27.9 9.9 94 44-148 17-119 (300)
39 3ksm_A ABC-type sugar transpor 41.5 1.7E+02 0.0058 25.1 11.3 133 219-359 2-153 (276)
40 3o74_A Fructose transport syst 41.4 1.7E+02 0.0058 25.1 13.0 131 218-359 3-146 (272)
41 1x92_A APC5045, phosphoheptose 41.2 1E+02 0.0035 26.1 8.2 35 94-128 111-149 (199)
42 3d8u_A PURR transcriptional re 40.8 1.8E+02 0.006 25.1 12.2 127 218-356 4-143 (275)
43 1lbq_A Ferrochelatase; rossman 40.5 1.2E+02 0.004 29.6 9.3 70 58-143 162-231 (362)
44 2a22_A Vacuolar protein sortin 39.4 73 0.0025 27.8 7.1 66 16-85 17-87 (215)
45 3hcw_A Maltose operon transcri 39.1 2E+02 0.0069 25.3 11.5 130 218-358 8-156 (295)
46 3bbl_A Regulatory protein of L 39.0 1.5E+02 0.0051 26.1 9.2 129 218-356 5-148 (287)
47 4gbj_A 6-phosphogluconate dehy 38.9 76 0.0026 29.5 7.5 94 44-148 19-119 (297)
48 1tjy_A Sugar transport protein 37.9 2.2E+02 0.0077 25.5 11.7 127 218-355 4-150 (316)
49 2vhw_A Alanine dehydrogenase; 37.9 1.6E+02 0.0055 28.2 9.9 43 90-132 81-132 (377)
50 2jnb_A NHP2-like protein 1; sp 37.9 43 0.0015 28.6 5.1 53 289-359 87-142 (144)
51 2p9j_A Hypothetical protein AQ 36.8 92 0.0031 25.0 6.9 74 68-161 42-116 (162)
52 2ale_A SNU13, NHP2/L7AE family 36.6 53 0.0018 27.6 5.4 57 289-363 69-128 (134)
53 2cc0_A Acetyl-xylan esterase; 36.2 2E+02 0.0069 24.5 10.9 95 39-153 77-185 (195)
54 2rgy_A Transcriptional regulat 36.2 2.2E+02 0.0076 24.9 11.1 127 218-356 9-151 (290)
55 3cl6_A PUUE allantoinase; URIC 36.2 1.4E+02 0.0048 27.7 8.8 85 35-119 75-180 (308)
56 3rot_A ABC sugar transporter, 35.5 2.3E+02 0.0079 24.9 12.6 135 218-359 4-156 (297)
57 8abp_A L-arabinose-binding pro 35.4 1.2E+02 0.0041 26.7 8.0 75 219-303 4-90 (306)
58 2fb6_A Conserved hypothetical 35.2 18 0.00063 29.5 2.2 85 40-150 24-117 (117)
59 4hv4_A UDP-N-acetylmuramate--L 35.2 1.3E+02 0.0044 30.0 8.9 61 56-123 47-109 (494)
60 2j13_A Polysaccharide deacetyl 33.9 2.1E+02 0.0071 25.7 9.4 44 40-83 129-175 (247)
61 3uug_A Multiple sugar-binding 33.5 2.6E+02 0.0088 24.9 11.7 129 218-358 4-156 (330)
62 1rlg_A 50S ribosomal protein L 33.3 52 0.0018 26.7 4.7 53 289-360 64-118 (119)
63 3jvd_A Transcriptional regulat 33.1 2.8E+02 0.0095 25.1 13.6 130 218-359 65-200 (333)
64 2iks_A DNA-binding transcripti 32.7 2.5E+02 0.0086 24.5 12.4 130 218-358 21-163 (293)
65 3dfz_A SIRC, precorrin-2 dehyd 32.6 55 0.0019 29.7 5.2 69 280-368 90-173 (223)
66 1xbi_A 50S ribosomal protein L 32.2 63 0.0022 26.3 5.0 52 289-360 66-119 (120)
67 3h75_A Periplasmic sugar-bindi 32.0 1.8E+02 0.0061 26.5 8.8 81 218-306 4-97 (350)
68 3g85_A Transcriptional regulat 32.0 1.2E+02 0.0041 26.5 7.4 128 218-357 12-151 (289)
69 3hn7_A UDP-N-acetylmuramate-L- 31.7 1.1E+02 0.0037 30.9 7.8 92 19-123 14-108 (524)
70 1mio_A Nitrogenase molybdenum 31.5 1.6E+02 0.0054 30.1 9.0 106 24-130 165-287 (533)
71 1y81_A Conserved hypothetical 31.5 73 0.0025 26.3 5.4 32 102-133 99-130 (138)
72 1ny1_A Probable polysaccharide 31.0 2.2E+02 0.0076 25.3 9.0 27 57-83 137-163 (240)
73 3e3m_A Transcriptional regulat 30.7 3.1E+02 0.011 25.0 11.2 116 218-344 71-198 (355)
74 2y8u_A Chitin deacetylase; hyd 30.7 2.2E+02 0.0077 25.2 9.0 27 57-83 125-151 (230)
75 3miz_A Putative transcriptiona 30.6 2.8E+02 0.0095 24.4 10.0 131 218-359 14-157 (301)
76 1jeo_A MJ1247, hypothetical pr 30.5 2.3E+02 0.0078 23.4 8.8 22 94-115 80-102 (180)
77 2k6g_A Replication factor C su 30.2 1.4E+02 0.0048 24.0 6.8 86 11-124 9-97 (109)
78 1k1e_A Deoxy-D-mannose-octulos 30.0 1.4E+02 0.0049 24.7 7.2 69 67-154 40-109 (180)
79 3etn_A Putative phosphosugar i 29.8 2.1E+02 0.0071 25.0 8.5 36 93-128 103-144 (220)
80 3e8m_A Acylneuraminate cytidyl 29.8 1.8E+02 0.0061 23.3 7.5 73 69-161 38-111 (164)
81 2i5i_A UPF0249 protein EF_3048 29.7 25 0.00086 32.5 2.4 26 23-48 3-29 (263)
82 3fwz_A Inner membrane protein 29.6 84 0.0029 25.2 5.4 73 97-177 8-83 (140)
83 2qv5_A AGR_C_5032P, uncharacte 29.1 70 0.0024 29.9 5.4 73 68-161 145-226 (261)
84 1vb5_A Translation initiation 28.9 63 0.0022 30.1 5.1 58 95-153 108-169 (276)
85 2fc3_A 50S ribosomal protein L 27.5 1.1E+02 0.0036 25.0 5.7 54 289-361 65-120 (124)
86 3g1w_A Sugar ABC transporter; 27.1 2.6E+02 0.0089 24.5 8.8 117 218-344 5-138 (305)
87 3clk_A Transcription regulator 26.7 3.2E+02 0.011 23.8 9.3 114 218-343 9-135 (290)
88 1tk9_A Phosphoheptose isomeras 26.1 2.3E+02 0.008 23.4 7.9 34 94-127 108-145 (188)
89 3tb6_A Arabinose metabolism tr 26.0 3.2E+02 0.011 23.6 11.6 128 218-357 16-160 (298)
90 3c3k_A Alanine racemase; struc 25.7 3.3E+02 0.011 23.7 12.4 127 218-356 9-147 (285)
91 2fep_A Catabolite control prot 25.4 3.4E+02 0.012 23.7 11.4 115 218-343 17-143 (289)
92 3l6u_A ABC-type sugar transpor 24.7 3.4E+02 0.012 23.5 11.3 131 218-359 9-161 (293)
93 3lkv_A Uncharacterized conserv 24.7 3.8E+02 0.013 24.2 9.6 67 218-288 9-76 (302)
94 2dri_A D-ribose-binding protei 24.6 3.4E+02 0.012 23.4 11.7 130 218-358 2-148 (271)
95 3ij5_A 3-deoxy-D-manno-octulos 24.3 2.1E+02 0.0072 24.9 7.5 67 70-155 84-151 (211)
96 3f4w_A Putative hexulose 6 pho 23.9 3.3E+02 0.011 23.1 9.1 40 109-150 93-133 (211)
97 4dll_A 2-hydroxy-3-oxopropiona 23.9 3.8E+02 0.013 24.6 9.5 91 45-147 46-145 (320)
98 2kkn_A Uncharacterized protein 23.9 2.5E+02 0.0087 23.6 7.7 83 56-159 52-143 (178)
99 3bil_A Probable LACI-family tr 23.6 4.2E+02 0.014 24.1 11.5 128 218-356 67-207 (348)
100 3gnh_A L-lysine, L-arginine ca 23.6 3.9E+02 0.013 24.4 9.6 94 34-129 161-270 (403)
101 3jy6_A Transcriptional regulat 23.5 3.6E+02 0.012 23.3 12.9 116 218-344 8-134 (276)
102 3s99_A Basic membrane lipoprot 23.5 2.5E+02 0.0084 26.8 8.3 121 218-346 27-162 (356)
103 3mn1_A Probable YRBI family ph 23.4 2.7E+02 0.0094 23.2 7.8 67 70-155 54-121 (189)
104 2hsg_A Glucose-resistance amyl 23.2 4E+02 0.014 23.8 10.5 115 218-343 61-187 (332)
105 2f5x_A BUGD; periplasmic bindi 23.0 3.2E+02 0.011 25.5 8.8 81 272-360 176-263 (312)
106 3e61_A Putative transcriptiona 22.5 3.7E+02 0.013 23.1 11.2 128 218-358 9-147 (277)
107 3lft_A Uncharacterized protein 22.3 4E+02 0.014 23.4 12.1 82 218-303 3-91 (295)
108 2x7x_A Sensor protein; transfe 22.2 4.2E+02 0.014 23.6 11.6 127 218-355 7-150 (325)
109 3pdu_A 3-hydroxyisobutyrate de 22.0 2.2E+02 0.0075 25.6 7.3 83 56-148 25-117 (287)
110 2rjo_A Twin-arginine transloca 21.6 4.3E+02 0.015 23.6 11.1 78 218-304 6-97 (332)
111 2e67_A Hypothetical protein TT 21.4 59 0.002 30.0 3.3 23 24-46 12-35 (264)
112 1m3s_A Hypothetical protein YC 21.2 3.5E+02 0.012 22.3 9.1 21 95-115 78-99 (186)
113 1vpq_A Hypothetical protein TM 21.1 69 0.0024 29.9 3.7 51 58-109 154-209 (273)
114 2ebu_A Replication factor C su 21.0 2.7E+02 0.0092 22.5 6.9 62 55-125 25-88 (112)
115 4b4k_A N5-carboxyaminoimidazol 20.7 1.3E+02 0.0044 26.9 5.1 51 63-151 34-84 (181)
116 1mio_B Nitrogenase molybdenum 20.6 6E+02 0.021 24.8 11.6 119 8-130 117-269 (458)
117 3n07_A 3-deoxy-D-manno-octulos 20.4 3.2E+02 0.011 23.4 7.7 65 71-154 61-126 (195)
118 2hqb_A Transcriptional activat 20.4 4.6E+02 0.016 23.4 11.1 119 218-346 6-139 (296)
119 1z2w_A Vacuolar protein sortin 20.0 1.2E+02 0.0042 25.7 4.8 28 56-84 42-71 (192)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=9.6e-94 Score=692.49 Aligned_cols=268 Identities=30% Similarity=0.526 Sum_probs=249.3
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEc
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLP 103 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIr 103 (368)
.|+|+||+++||||||+|||++|+++++++ ++|||++|||||||+|+++|+++|+.|+++ +++|+|++||||
T Consensus 1 ~m~I~lA~~~GFC~GV~RAI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIir 72 (297)
T 3dnf_A 1 MVDIIIAEHAGFCFGVKRAVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIR 72 (297)
T ss_dssp CCEEEECTTCSSCHHHHHHHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEEC
T ss_pred CeEEEEeCCCCCCccHHHHHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEE
Confidence 489999999999999999999999999876 478999999999999999999999999973 678889999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC---C-cEEEEcChhhHHH
Q 017615 104 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEY 179 (368)
Q Consensus 104 AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a---~-~~~vv~~~~e~~~ 179 (368)
|||+||+++++|+++|++|||||||+|+|+|+.|++++++||+|||+|+++||||+|+.||+ + +++||++++|++.
T Consensus 73 AHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~ 152 (297)
T 3dnf_A 73 SHGIPPEKEEALRKKGLKVIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE 152 (297)
T ss_dssp TTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG
T ss_pred CCCCCHHHHHHHHHCCCEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 4 6899999999987
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc
Q 017615 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS 259 (368)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 259 (368)
|. .++++++++|||||.++|++|+++|+++ | +++.+
T Consensus 153 l~----------------------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r----~------p~~~~ 188 (297)
T 3dnf_A 153 AL----------------------------------KHERVGIVAQTTQNEEFFKEVVGEIALW----V------KEVKV 188 (297)
T ss_dssp GG----------------------------------GCSEEEEEECTTCCHHHHHHHHHHHHHH----S------SEEEE
T ss_pred cC----------------------------------CCCcEEEEEecCCcHHHHHHHHHHHHHh----C------CCCCC
Confidence 51 1258999999999999999999999863 2 35778
Q ss_pred cCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcc
Q 017615 260 FNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN 327 (368)
Q Consensus 260 ~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~ 327 (368)
+|||||||++||+|+++|| +++|+|||| |+|++.|++|||||+++||++ +
T Consensus 189 ~~tIC~AT~~RQ~av~~la-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~ 250 (297)
T 3dnf_A 189 INTICNATSLRQESVKKLA-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------E 250 (297)
T ss_dssp ECCCCSHHHHHHHHHHHHG-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------G
T ss_pred CCCccHHHHHHHHHHHHHH-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------H
Confidence 9999999999999999998 699999999 999999999999999999999 9
Q ss_pred cccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhhh
Q 017615 328 WLPKGQITIGITSGASTPDKAVEDVLKKVFEIKRE 362 (368)
Q Consensus 328 ~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~~ 362 (368)
|| .++.+||||||||||+|||+||+++|+++...
T Consensus 251 wl-~~~~~VGITAGASTP~~li~eVi~~l~~~~~~ 284 (297)
T 3dnf_A 251 WF-RGVKRVGISAGASTPDWIIEQVKSRIQEICEG 284 (297)
T ss_dssp GG-TTCSEEEEEECTTCCHHHHHHHHHHHHHC---
T ss_pred Hh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhccC
Confidence 99 68999999999999999999999999987544
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=2e-93 Score=697.78 Aligned_cols=274 Identities=27% Similarity=0.439 Sum_probs=251.3
Q ss_pred ecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEE
Q 017615 22 WGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV 101 (368)
Q Consensus 22 ~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VI 101 (368)
-|.|.|++|+++||||||+|||++|+++++++ +++||++|||||||+|+++|+++|+.|++ +++++|+|++||
T Consensus 10 ~~~~~i~lA~~~GFC~GV~RAI~~ae~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve------~l~ev~~g~~VI 82 (328)
T 3szu_A 10 HGSMQILLANPRGFCAGVDRAISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFIE------QISEVPDGAILI 82 (328)
T ss_dssp ---CEEEECSSCSCCHHHHHHHHHHHHHHHHH-CSCEEEESCSSSCHHHHHHHHHTTEEEES------SGGGSCTTCEEE
T ss_pred CCceEEEEeCCCCcCccHHHHHHHHHHHHHhc-CCCEEEeCCCccCHHHHHHHHHCCCEEec------chhhCCCCCEEE
Confidence 48899999999999999999999999999876 35899999999999999999999999997 478999999999
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC--C--cEEEEcChhhH
Q 017615 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEA 177 (368)
Q Consensus 102 IrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a--~--~~~vv~~~~e~ 177 (368)
|||||+||+++++|+++|++|||||||+|+|+|+.|++++++||+|||+|+++||||+|+.||+ + ++++|++++|+
T Consensus 83 irAHGv~~~v~~~a~~rgl~iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv 162 (328)
T 3szu_A 83 FSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDV 162 (328)
T ss_dssp ECTTCCCHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHH
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 3 58999999999
Q ss_pred HHhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccc
Q 017615 178 EYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHF 257 (368)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 257 (368)
+.|. + .+++++++++|||||.++|++|+++|+++|+... +
T Consensus 163 ~~l~-------------------------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~--------~ 202 (328)
T 3szu_A 163 WKLT-------------------------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIV--------G 202 (328)
T ss_dssp HHCC-------------------------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCB--------C
T ss_pred HhCC-------------------------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccc--------c
Confidence 8751 1 1236899999999999999999999998655432 2
Q ss_pred cccCcccHHHHHHHHHHHHhhhhcCCEEEEe------------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhh
Q 017615 258 ISFNTICDATQERQDAMYKMVEEKVDLILVV------------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEK 325 (368)
Q Consensus 258 ~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~ 325 (368)
..+|||||||++||+|+++|| +++|+|||| |+|++.|++|||||+++||++
T Consensus 203 ~~~ntIC~AT~~RQ~av~~lA-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~---------------- 265 (328)
T 3szu_A 203 PRKDDICYATTNRQEAVRALA-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE---------------- 265 (328)
T ss_dssp CSSCSCCHHHHHHHHHHHHHH-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH----------------
T ss_pred CCCCCcCHHHHHHHHHHHHHH-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH----------------
Confidence 348999999999999999998 689999999 999999999999999999999
Q ss_pred cccccCCCcEEEEeecCCCcHHHHHHHHHHHHhhhh
Q 017615 326 ENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKR 361 (368)
Q Consensus 326 ~~~l~~~~~~VGITAGASTP~~lI~eVi~~l~~~~~ 361 (368)
+|| .++.+||||||||||+|||++|+++|+++.+
T Consensus 266 -~wl-~g~~~VGITAGASTP~~lieeVi~~l~~~~~ 299 (328)
T 3szu_A 266 -EWV-KEVKCVGVTAGASAPDILVQNVVARLQQLGG 299 (328)
T ss_dssp -HHH-TTCSEEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred -HHh-CCCCEEEEeecCCCCHHHHHHHHHHHHHhCC
Confidence 999 6899999999999999999999999998744
No 3
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=93.52 E-value=1.2 Score=43.00 Aligned_cols=169 Identities=17% Similarity=0.125 Sum_probs=123.4
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCEE-EEcCCCCC-
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAA- 108 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~V-IIrAHGv~- 108 (368)
|.=|.+.=..+.+..++ +..|...|.==| |+|..-+-.- ++.++++.++. +.++..+.+ ++.==-.+
T Consensus 96 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~g~~~~~~~~~~vV~~~ed~---~~l~~~~kv~~vsQTT~s~ 169 (297)
T 3dnf_A 96 CPYVKAVHEAVCQLTRE--GYFVVLVGEKNH-PEVIGTLGYLRACNGKGIVVETLEDI---GEALKHERVGIVAQTTQNE 169 (297)
T ss_dssp CHHHHHHHHHHHHHHHT--TCEEEEESCTTC-HHHHHHHHHHHHTTCCEEEESSGGGG---GGGGGCSEEEEEECTTCCH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEecCCC-ceEEeeccccccCCCcEEEEcCHHHH---HhcCCCCcEEEEEecCCcH
Confidence 66677777777777765 457999999888 8888776333 57778765433 334333444 44443334
Q ss_pred ---HHHHHHHHhcC--CcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHHH
Q 017615 109 ---VEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEY 179 (368)
Q Consensus 109 ---~~~~~~l~~~g--~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~~ 179 (368)
.++.+.|+++. +.+.|+-|.-..+=|..+++++++=--+|++|.++-.-+.=+..-| .+++.|++.+|++.
T Consensus 170 ~~~~~iv~~L~~r~p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 249 (297)
T 3dnf_A 170 EFFKEVVGEIALWVKEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP 249 (297)
T ss_dssp HHHHHHHHHHHHHSSEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG
T ss_pred HHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH
Confidence 34556777765 5578999999999999999999999999999999887766654433 35889999998753
Q ss_pred hhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 180 VCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
- + | + ..++||+.+=+.-+....+++++.|+.
T Consensus 250 ~------------------w---l--------~---~~~~VGITAGASTP~~li~eVi~~l~~ 280 (297)
T 3dnf_A 250 E------------------W---F--------R---GVKRVGISAGASTPDWIIEQVKSRIQE 280 (297)
T ss_dssp G------------------G---G--------T---TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------H---h--------C---CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 1 0 1 1 125899999999999999999999875
No 4
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=91.81 E-value=2.3 Score=41.50 Aligned_cols=172 Identities=12% Similarity=0.170 Sum_probs=123.3
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCEEEEcCCCCC--
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-- 108 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~-- 108 (368)
|.=|.++=..+.+..++ +..|...|.==| |+|..-+-.- ++.++++.++.+.++.-.+....++.==-.+
T Consensus 108 CP~V~Kvh~~v~~~~~~--Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~ 184 (328)
T 3szu_A 108 CPLVTKVHMEVARASRR--GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVD 184 (328)
T ss_dssp CHHHHHHHHHHHHHHHH--TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHH
T ss_pred CcchHHHHHHHHHHHhC--CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHH
Confidence 66677777777777665 357999999888 8888877543 4777776543322221111234455544444
Q ss_pred --HHHHHHHHhcCCcE----EeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC----CcEEEEcChhhHH
Q 017615 109 --VEEMVTLNNKNVQI----VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAE 178 (368)
Q Consensus 109 --~~~~~~l~~~g~~i----iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a----~~~~vv~~~~e~~ 178 (368)
.++.+.|+++.-.+ .|+-|.-..+=|..+++++++=--+|++|.++-.-+.=+..-| .+++.|++.+|++
T Consensus 185 ~~~~iv~~L~~r~p~i~~~~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~ 264 (328)
T 3szu_A 185 DTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQ 264 (328)
T ss_dssp HHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCC
T ss_pred HHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCC
Confidence 45566788877665 4999999999999999999999999999999877776554433 3578999999885
Q ss_pred HhhhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceeEEEEcCCCChHHHHHHHHHHHH
Q 017615 179 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 242 (368)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~ 242 (368)
. ++ |. ..++||+.+=+.-+....+++++.|+.
T Consensus 265 ~------------------~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 265 E------------------EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp H------------------HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred H------------------HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 3 11 11 125899999999999999999999875
No 5
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=77.18 E-value=37 Score=31.17 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=69.6
Q ss_pred cchHHHHHHhcCCcceec-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 017615 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~~--------~~~~Vy~lG 62 (368)
.+.+.++|++.|+....- .+++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 44 ~~~l~~~L~~~G~~v~~~P~i~i~~~~~~~l~~~l~~l~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG 123 (286)
T 3d8t_A 44 KEEFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 123 (286)
T ss_dssp HHHHHHHHHHHTCEEEECCCEEEEEEECTTHHHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCeEEEeeeEEEecCCHHHHHHHHHhhccCCCEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEEC
Confidence 578899999999765543 3444321 11222233344555444433221 124799998
Q ss_pred ccccCHHHHHHHHhcCcEE--ecCCccccccccccCCC--EEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 017615 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (368)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~~~~~~~l~el~~g~--~VIIrAHGv~~~~~~~l~~~g~~iiDaTC 127 (368)
+ ..-+.|++.|+.. +.+.+...-++.+.+|. +++.|+-+-.+...+.|+++|..|....|
T Consensus 124 ~-----~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 124 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred H-----HHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 4 5568999999864 22111111223343355 45678888889999999999998865544
No 6
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=76.74 E-value=38 Score=33.44 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=62.4
Q ss_pred eEEEEeCCCCCcccHHHHHHHHHHHHhhC-------------------------------------CCCceEEecccccC
Q 017615 25 VKVKLAESYGFCWGVERAVQIAYEARKQF-------------------------------------PEEKIWITNEIIHN 67 (368)
Q Consensus 25 mkI~lA~~~GFC~GV~RAI~~a~~~~~~~-------------------------------------~~~~Vy~lG~iIHN 67 (368)
..|+.+...||..+...+.+.|.+++-++ ..+.|-.+|.+ |
T Consensus 129 ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnilG~~--~ 206 (460)
T 2xdq_A 129 IPIVVARANGLDYAFTQGEDTVLAAMAARCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSL--P 206 (460)
T ss_dssp SCEEEEECCTTTCCTTHHHHHHHHHHHTTCCCCC-----------------------------CCCSCCCEEEESCC--C
T ss_pred CcEEEEecCCccccHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCCcEEEEEec--C
Confidence 56888889999866655555554443211 12268899987 7
Q ss_pred HHH----HHHHHhcCcEEecC--CccccccccccCCCEEEEcCCCCCHHHHHHH-HhcCCcEEeCcCchh
Q 017615 68 PTV----NKRLEEMAVQNIPV--EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPWV 130 (368)
Q Consensus 68 ~~V----v~~L~~~GV~~v~~--~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l-~~~g~~iiDaTCP~V 130 (368)
+.. ..-|++.|+.++.= ....+++..++.....+.--+-.. ..-+.| ++.|...+....|+-
T Consensus 207 ~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~G 275 (460)
T 2xdq_A 207 DPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPIG 275 (460)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSBH
T ss_pred ccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCcc
Confidence 764 55678999987651 112233444443443333333333 555556 567899999888985
No 7
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=73.77 E-value=10 Score=33.34 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhc-----CcEEecCCccccccccccCCCE-EEEcCCCCCHHHH
Q 017615 39 VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDV-VVLPAFGAAVEEM 112 (368)
Q Consensus 39 V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~-----GV~~v~~~~~~~~l~el~~g~~-VIIrAHGv~~~~~ 112 (368)
+++|.++.-+++.. ++.||++|- =|-.-+.+..--+ |+..+. +..++.++|+ +||+..|..+...
T Consensus 24 I~~AA~llaqai~~--~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~------~~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 24 LFDVVRLLAQALVG--QGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK------DHKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC------TTCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHhC--CCEEEEECC-CcHHHHHHHHHcccCCccchhhhh------hcCCCCCCCEEEEEeCCCCCHHHH
Confidence 56666666666664 468999983 4544444433222 222222 2346667777 4799999988776
Q ss_pred HHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecCCCccee
Q 017615 113 VTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (368)
Q Consensus 113 ~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~ 159 (368)
+.+ .++.++|-.+|.+-...|-+..
T Consensus 95 e~A----------------------~~ake~G~~vIaITs~~~~~~~ 119 (170)
T 3jx9_A 95 ASL----------------------ARYDAWHTPYSIITLGDVTETL 119 (170)
T ss_dssp HHH----------------------HHHHHHTCCEEEEESSCCCTTG
T ss_pred HHH----------------------HHHHHCCCcEEEEeCcchhccc
Confidence 655 3345666666666665555543
No 8
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=72.81 E-value=2 Score=42.13 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=43.1
Q ss_pred CCCCcccHHHHHHHHHHHHhh---CC-----CCceEEecccccCHHHHHHHHhcCcEEecC
Q 017615 32 SYGFCWGVERAVQIAYEARKQ---FP-----EEKIWITNEIIHNPTVNKRLEEMAVQNIPV 84 (368)
Q Consensus 32 ~~GFC~GV~RAI~~a~~~~~~---~~-----~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~ 84 (368)
..+||+|.+++.+..++.+++ .+ +.+|...|-.+.|+.+.+.|++.|+.+|-+
T Consensus 198 ~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 198 KSGFFMRKEEHTELVKDLIAKLNAMPEEVCSGKKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp HGGGGSCHHHHHHHHHHHHHHHHHSCCCCCSSEEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred HhheeCCHHHHHHHHHHHHHHHHhhhhcCCCCceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 457999999999988775432 11 237999999999999999999999999864
No 9
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=71.33 E-value=4.2 Score=34.52 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=49.6
Q ss_pred CCccccchHHHHHHh-cCCcceecceEEEEeCCCCC-cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC
Q 017615 1 MNQEYTSDIIKKLKE-NGFEYTWGNVKVKLAESYGF-CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA 78 (368)
Q Consensus 1 ~~~~y~~~~~~~~~~-~~~~~~~g~mkI~lA~~~GF-C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G 78 (368)
|+.+-+++|++..+. .|.|+.||+. .+.|| |.|--+ .+++.. . + |--|..-....+.|
T Consensus 1 mn~~~~~~ii~~a~~~lG~PY~wGG~-----~~~G~DCSGlv~---~vy~~~--~-G---------i~lPr~s~~q~~~g 60 (135)
T 2k1g_A 1 MNVDVKSRIMDQYADWKGVRYRLGGS-----TKKGIDCSGFVQ---RTFREQ--F-G---------LELPRSTYEQQEMG 60 (135)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCC-----BTTBCCHHHHHH---HHHHHT--T-C---------CCCCSSHHHHGGGS
T ss_pred CCHhHHHHHHHHHHHHCCCCccCCCc-----CCCCceeHHHHH---HHHHHc--C-C---------CCCCCCHHHHhhCC
Confidence 677888999988776 4999999984 47798 999644 333321 1 1 12244445555566
Q ss_pred cEEecCCccccccccccCCCEEEEcC
Q 017615 79 VQNIPVEEGKKQFDVVNKGDVVVLPA 104 (368)
Q Consensus 79 V~~v~~~~~~~~l~el~~g~~VIIrA 104 (368)
-. |+ .+++.+||.|.++.
T Consensus 61 ~~-V~-------~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 61 KS-VS-------RSNLRTGDLVLFRA 78 (135)
T ss_dssp EE-EC-------GGGCCTTEEEEEEE
T ss_pred cE-ec-------HHHccCCcEEEECC
Confidence 44 32 46778899888864
No 10
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=71.10 E-value=15 Score=31.96 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=34.2
Q ss_pred CCcceecc-eEEEEeC-CCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC--cEEecC
Q 017615 17 GFEYTWGN-VKVKLAE-SYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (368)
Q Consensus 17 ~~~~~~g~-mkI~lA~-~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~ 84 (368)
+.+.++.+ |+|.+.. .-|- ..+++.+.+.+++.....|+.+|+|+. |.+++.|++.+ +.+|..
T Consensus 17 ~~~~~~~g~m~i~~iSD~Hg~----~~~l~~~l~~~~~~~~D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 17 TENLYFQGHMKIGIMSDTHDH----LPNIRKAIEIFNDENVETVIHCGDFVS-LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp ---------CEEEEECCCTTC----HHHHHHHHHHHHHSCCSEEEECSCCCS-THHHHHGGGCSSEEEEECC
T ss_pred ccChhhcCCeEEEEEeeCCCC----HHHHHHHHHHHhhcCCCEEEECCCCCC-HHHHHHHHhcCCCEEEEeC
Confidence 35666765 8987653 3342 345555544443322346999999985 67899998654 555654
No 11
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=70.66 E-value=54 Score=29.24 Aligned_cols=117 Identities=10% Similarity=-0.012 Sum_probs=69.4
Q ss_pred cchHHHHHHhcCCcceec-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhhC--------CCCceEEec
Q 017615 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQF--------PEEKIWITN 62 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~~--------~~~~Vy~lG 62 (368)
.+.+.++|++.|+....- .+++.-. ...+.-|==.+||+...+.+.+. .+.++|+.|
T Consensus 19 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG 98 (261)
T 1wcw_A 19 KEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARG 98 (261)
T ss_dssp HHHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESS
T ss_pred hHHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHhCchHHHHhcCCeEEEEC
Confidence 578899999998765443 3444321 11222333345555554443321 124799998
Q ss_pred ccccCHHHHHHHHhcCcEE--ecCCccccccccccCCC--EEEEcCCCCCHHHHHHHHhcCCcEEeCcC
Q 017615 63 EIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTLNNKNVQIVDTTC 127 (368)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~--v~~~~~~~~l~el~~g~--~VIIrAHGv~~~~~~~l~~~g~~iiDaTC 127 (368)
+ ..-+.|++.|+.. +.+.+...-++.+.+|. +++.|+-+-.+...+.|+++|..+....|
T Consensus 99 ~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~ 162 (261)
T 1wcw_A 99 A-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 162 (261)
T ss_dssp H-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECS
T ss_pred H-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEee
Confidence 5 4567899999864 22111111223333355 45678888889999999999988855544
No 12
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=68.59 E-value=35 Score=33.77 Aligned_cols=103 Identities=11% Similarity=0.135 Sum_probs=62.7
Q ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHHhh----CCCCceEEecccccC--HHHHHHHHhcCcEEecCCcccccccccc--
Q 017615 24 NVKVKLAESYGFCWGVERAVQIAYEARKQ----FPEEKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEGKKQFDVVN-- 95 (368)
Q Consensus 24 ~mkI~lA~~~GFC~GV~RAI~~a~~~~~~----~~~~~Vy~lG~iIHN--~~Vv~~L~~~GV~~v~~~~~~~~l~el~-- 95 (368)
+..|+-+...||-..-....+.|.+++-+ .+...|-.+|++--+ .++..-|++.|+.++.-.++. .++++.
T Consensus 148 ~~pVi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~ 226 (437)
T 3aek_A 148 HVRVYSYTGSGLDTTFTQGEDTCLAAMVPTLDTTEAAELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAV 226 (437)
T ss_dssp TCEEEEEECCTTTCCTTHHHHHHHHHHGGGSCBCCCCCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCB
T ss_pred CCeEEEeECCCCCCcHHHHHHHHHHHHHHHhcccCCCcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhh
Confidence 46688888888864234444444444332 123579999996433 255666799999876533322 445553
Q ss_pred -CCC-EEEEcCCCCCHHHHHHHHhcCCcEEeCcCch
Q 017615 96 -KGD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (368)
Q Consensus 96 -~g~-~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~ 129 (368)
... ++++...+ ...-+.+++.|...+..+.|+
T Consensus 227 ~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~ 260 (437)
T 3aek_A 227 GPNTRFILAQPFL--GETTGALERRGAKRIAAPFPF 260 (437)
T ss_dssp CTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSC
T ss_pred hcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCc
Confidence 322 35555444 445555588899999998887
No 13
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=63.31 E-value=28 Score=30.90 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=75.5
Q ss_pred cccchHHHHHHhcCCcceec-ceEEEEe-----------CCCCCcccHHHHHHHHHHHHh-hCCCCceEEecccccCHHH
Q 017615 4 EYTSDIIKKLKENGFEYTWG-NVKVKLA-----------ESYGFCWGVERAVQIAYEARK-QFPEEKIWITNEIIHNPTV 70 (368)
Q Consensus 4 ~y~~~~~~~~~~~~~~~~~g-~mkI~lA-----------~~~GFC~GV~RAI~~a~~~~~-~~~~~~Vy~lG~iIHN~~V 70 (368)
+..+.+.++|++.|+....- .+++.-. ......|==.+||+...+.+. ..++.++|+.|+ ..
T Consensus 11 ~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~aVG~-----~T 85 (240)
T 3mw8_A 11 GKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYAVGD-----AT 85 (240)
T ss_dssp TSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEESSH-----HH
T ss_pred HHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEEECH-----HH
Confidence 44678999999998655442 3344321 233445555666666665553 234467999996 45
Q ss_pred HHHHHhcCcEEecCCc---cccccc------cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----EeCcCch
Q 017615 71 NKRLEEMAVQNIPVEE---GKKQFD------VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPW 129 (368)
Q Consensus 71 v~~L~~~GV~~v~~~~---~~~~l~------el~~g~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTCP~ 129 (368)
-+.|++.|+..+--.+ ..+.|- .++...++++|+-+-.+...+.|+++|..| +++.+|-
T Consensus 86 a~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~ 158 (240)
T 3mw8_A 86 ADALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPP 158 (240)
T ss_dssp HHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCC
T ss_pred HHHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCC
Confidence 5899999996532111 111121 122334678899988999999999999876 5555553
No 14
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=60.42 E-value=99 Score=28.07 Aligned_cols=129 Identities=14% Similarity=0.158 Sum_probs=70.0
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV------- 288 (368)
..|+++...+ ++-.-|..+..-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 133 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK-G-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVD 133 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHH
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCChH
Confidence 5799887652 44456777777776543322 2 23444443 22234443 4455655789999998
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCCCcchhhh-ccchh-hhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 357 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~ 357 (368)
+.+++.+.|...+.+..+-.. +.+-. -+.+. ..--++| ..|.++||+.+|.....+..+..-.+..
T Consensus 134 ~~~~~~~~~~iPvV~~~~~~~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 205 (338)
T 3dbi_A 134 EIDDIIDAHSQPIMVLNRRLRKNS---SHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKD 205 (338)
T ss_dssp HHHHHHHHCSSCEEEESSCCSSSG---GGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEEcCCCCCCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHH
Confidence 456667789988876533211 11100 00000 1111222 2478999999987555555444444443
No 15
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=59.46 E-value=17 Score=32.49 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCceEEecccccCHHHHHHHHhcCcEEecCCcc--ccc-cc----cccCCCEEEEcCCCCCHHHHHHHHhcCCcE-----
Q 017615 55 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG--KKQ-FD----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI----- 122 (368)
Q Consensus 55 ~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~--~~~-l~----el~~g~~VIIrAHGv~~~~~~~l~~~g~~i----- 122 (368)
+.++|+.|+ ..-+.|++.|+..+--.+. .+. ++ .++...++++|+-+-.+...+.|+++|..+
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 141 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVV 141 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEEEEEE
Confidence 357999995 5668999999976422111 011 11 123345678999988999999999999876
Q ss_pred EeCcCch
Q 017615 123 VDTTCPW 129 (368)
Q Consensus 123 iDaTCP~ 129 (368)
+++.||-
T Consensus 142 Y~~~~~~ 148 (229)
T 3p9z_A 142 YENKLKH 148 (229)
T ss_dssp EEEEECC
T ss_pred EEeeCCC
Confidence 5555553
No 16
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=56.97 E-value=1e+02 Score=27.01 Aligned_cols=131 Identities=10% Similarity=0.062 Sum_probs=72.2
Q ss_pred ceeEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHH-HHhhhhcCCEEEEe----
Q 017615 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVV---- 288 (368)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~eLa~~~vD~miVV---- 288 (368)
..|+++...+ ++..-|..+.+-+.+...+. + .++.++++-- ..++|..+ ..|.+..+|.+|++
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-G-----YALYMSTGET--EEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-T-----CEEEECCCCS--HHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-C-----CEEEEEeCCC--CHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5799988763 44556777877776543322 2 2444444432 33444443 33444689999998
Q ss_pred -----hhhhccCCCeEEeCCCCCcCC-CCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 -----EIAEDRGIPSYWIDSEKRIGP-GNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 -----eia~~~~~~t~~Ie~~~eL~~-~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-.. ...+..- ...+ ..--++| ..|.++|++..|.....+..+....+.+.
T Consensus 81 ~~~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 156 (292)
T 3k4h_A 81 NDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAA--REVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDA 156 (292)
T ss_dssp TCHHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHH--HHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHH--HHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHH
Confidence 445577899999987643221 1111100 0011 1111222 24789999999987665555554444443
No 17
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=56.80 E-value=1.1e+02 Score=27.37 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=65.7
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe---------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV--------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV--------- 288 (368)
+|+++..++-+ -|..+.+-+++...+. + -++.+.++- ....++| +.++.|.+..+|.+|+.
T Consensus 3 ~Ig~i~~~~~~--~~~~~~~gi~~~~~~~-g-----~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 73 (313)
T 2h3h_A 3 TIGVIGKSVHP--YWSQVEQGVKAAGKAL-G-----VDTKFFVPQ-KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIP 73 (313)
T ss_dssp EEEEECSCSSH--HHHHHHHHHHHHHHHH-T-----CEEEEECCS-SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHH
T ss_pred EEEEEeCCCcH--HHHHHHHHHHHHHHHc-C-----CEEEEECCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHH
Confidence 68888765433 6777777776543322 2 233332210 1223343 34555655789999987
Q ss_pred --hhhhccCCCeEEeCCCCCc-CCCCcchhh-hccchhhhhccccc---CCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 --EIAEDRGIPSYWIDSEKRI-GPGNKIAYK-LMHGELVEKENWLP---KGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL-~~~~~~~~~-~~~~~~~~~~~~l~---~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+++.+.|...+.+..+- .....+..- ...+. .--+||- .|.++||+..|...-.+..+..-.+.+.+
T Consensus 74 ~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~--~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l 149 (313)
T 2h3h_A 74 TIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGY--TAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAI 149 (313)
T ss_dssp HHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHH--HHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHH--HHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHh
Confidence 3344678899988775321 110011000 01111 1112221 27899999998744334444444443333
No 18
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=56.21 E-value=50 Score=29.39 Aligned_cols=126 Identities=10% Similarity=0.123 Sum_probs=68.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe---------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV--------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV--------- 288 (368)
..|+++. .++..-|..+.+-+.+...+. + .++.++++--... -.+.+..|.+..+|.+|+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 82 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATRR-G-----YDVMLSAVAPSRA--EKVAVQALMRERCEAAILLGTRFDTDEL 82 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHHT-T-----CEEEEEEEBTTBC--HHHHHHHHTTTTEEEEEEETCCCCHHHH
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCCCCHH--HHHHHHHHHhCCCCEEEEECCCCCHHHH
Confidence 5799998 566667888888887643332 2 2344433322221 2334555655789999998
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchh-hhccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAY-KLMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 357 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~ 357 (368)
+...+ +.|...+.+..+-.....+.- ....+. .--++| ..|.++||+.+|...+ ...+....+.+
T Consensus 83 ~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~--~a~~~L~~~G~~~I~~i~~~~~~-~~~~R~~Gf~~ 149 (289)
T 3k9c_A 83 GALAD-RVPALVVARASGLPGVGAVRGDDVAGIT--LAVDHLTELGHRNIAHIDGADAP-GGADRRAGFLA 149 (289)
T ss_dssp HHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHH--HHHHHHHHTTCCSEEEECCTTST-THHHHHHHHHH
T ss_pred HHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHH--HHHHHHHHCCCCcEEEEeCCCCc-cHHHHHHHHHH
Confidence 33334 899999987543211100100 000111 111222 2478999999998765 44444444433
No 19
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=56.14 E-value=1e+02 Score=27.47 Aligned_cols=130 Identities=16% Similarity=0.131 Sum_probs=69.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.-. ++..-|..+.+-+++...+. + -++.++++ ....++| +.++.|.+..+|.+|+.
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 73 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAESL-G-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQVLS 73 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHHT-S-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCH
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH
Confidence 368887754 33344566666666533222 2 23444443 2233344 34555655789999998
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCC-Ccchhh-hccchhhhhccccc--CCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGELVEKENWLP--KGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~-~~~~~~-~~~~~~~~~~~~l~--~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-... ..+..- ...+ ..--++|- .|.++|++..|.+.-.+..+....+.+.
T Consensus 74 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~ 148 (313)
T 3m9w_A 74 NVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVG--ELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKV 148 (313)
T ss_dssp HHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHH--HHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHH--HHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHH
Confidence 4455678999999875432221 011100 0111 11112331 3788999999876655555554444433
No 20
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=55.94 E-value=75 Score=28.27 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=71.3
Q ss_pred ceeEEEEcC---CCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHH-HHhhhhcCCEEEEe-----
Q 017615 218 VKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVV----- 288 (368)
Q Consensus 218 ~kv~vvsQT---T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~eLa~~~vD~miVV----- 288 (368)
..|+++.-. .++-.-|.++..-+.+...+. + .++.++++- . .++|..+ ..|.+..+|.+|+.
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-G-----LDLLLIPDE--P-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-T-----CEEEEEEEC--T-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHC-C-----CEEEEEeCC--C-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 578888752 455566778888777643332 2 234444331 1 2334444 33444589999998
Q ss_pred ----hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 ----EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+++.+.|...+.+..+-..-..+..- ...+. .--++| ..|.++||+.+|.....+..+..-.+...+
T Consensus 78 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~--~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al 152 (294)
T 3qk7_A 78 DFRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGAS--LAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTM 152 (294)
T ss_dssp CHHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHH--HHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHH--HHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHH
Confidence 4455778999999875322211111000 00111 111222 247899999999876655555555444433
No 21
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=52.71 E-value=1.3e+02 Score=26.84 Aligned_cols=132 Identities=7% Similarity=0.015 Sum_probs=72.2
Q ss_pred ceeEEEEcCC----CChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe----
Q 017615 218 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV---- 288 (368)
Q Consensus 218 ~kv~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV---- 288 (368)
..|+++.-.. ++..-|..+.+-+.+...+. + .++.++++- ...++|.. +..|.+..+|.+|+.
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-G-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-T-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 5799887663 44456777777776543332 2 234444432 22344443 344444689999998
Q ss_pred -----hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 -----EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 -----eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+++.+.|...+.+..+-.....+..- ...+.. --++| ..|.++||+.+|.....+..+..-.+...+
T Consensus 95 ~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l 170 (305)
T 3huu_A 95 DDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQ--LTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYC 170 (305)
T ss_dssp TCHHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHH--HHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHH--HHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHH
Confidence 4455778999999876532211111100 001111 11222 247899999999776655555554444433
No 22
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=51.39 E-value=48 Score=27.80 Aligned_cols=67 Identities=6% Similarity=-0.084 Sum_probs=51.8
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEE
Q 017615 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (368)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~III 149 (368)
.++.|+++|+.+.= ++ -+-.......++..|+.+++...|...-+....+++.-....++.
T Consensus 47 ~l~~L~~~g~~~~i------------------~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTMLI------------------LS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEEE------------------EE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEEE------------------EE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 68889888876541 11 122456677788889889999999999999999888777789999
Q ss_pred EecCCC
Q 017615 150 HGKYSH 155 (368)
Q Consensus 150 iG~~~H 155 (368)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999864
No 23
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=50.43 E-value=82 Score=27.42 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=17.5
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHHH
Q 017615 94 VNKGDVV-VLPAFGAAVEEMVTLN 116 (368)
Q Consensus 94 l~~g~~V-IIrAHGv~~~~~~~l~ 116 (368)
+.++|.| +|+.-|-++++.+.++
T Consensus 112 ~~~~Dvvi~iS~SG~t~~~~~~~~ 135 (201)
T 3trj_A 112 GNEDDILLVITTSGDSENILSAVE 135 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHH
Confidence 4567765 5889999999987663
No 24
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=48.85 E-value=64 Score=27.33 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 017615 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (368)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l 115 (368)
+.++|. ++|+.-|-++++.+.+
T Consensus 107 ~~~~DvvI~iS~SG~t~~~i~~~ 129 (196)
T 2yva_A 107 GHAGDVLLAISTRGNSRDIVKAV 129 (196)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHH
Confidence 456776 4689999999887765
No 25
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=48.32 E-value=50 Score=29.55 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=70.2
Q ss_pred cchHHHHHHhcCCcceec-ceEEEEe--------------CCCCCcccHHHHHHHHHHHHhh-C---CCCceEEeccccc
Q 017615 6 TSDIIKKLKENGFEYTWG-NVKVKLA--------------ESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEIIH 66 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~g-~mkI~lA--------------~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Vy~lG~iIH 66 (368)
.+.+.++|++.|+....- .+++.-. ......|==.+||+...+.+.+ + ++.++|+.|+
T Consensus 18 ~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aVG~--- 94 (254)
T 4es6_A 18 CAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGA--- 94 (254)
T ss_dssp HHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEESSH---
T ss_pred hHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH---
Confidence 467899999998654443 2333221 1223344445566655554432 1 1247999986
Q ss_pred CHHHHHHHHhcCcEEecCCcc-----c-cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 017615 67 NPTVNKRLEEMAVQNIPVEEG-----K-KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (368)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~-----~-~~l~-----el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa 125 (368)
..-+.|++.|+.+.-..++ + ..+. ..+...++++|+-+-.+...+.|+++|..|...
T Consensus 95 --~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~ 162 (254)
T 4es6_A 95 --ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYL 162 (254)
T ss_dssp --HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred --HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEE
Confidence 4558899999986532211 1 1121 233345678999999999999999999987433
No 26
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=48.14 E-value=51 Score=30.90 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=39.1
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCcccccccccc--CCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 017615 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~--~g~~VIIrAHGv~~--~~~~~l~~~g~~ii 123 (368)
-.|+.. +.--++...+.|++.|+.+.... +.+.+. .-| +|+-+=|+|+ ..+++++++|+.|+
T Consensus 29 ~~V~~~-D~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 29 FEVSGC-DAKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKAD-VYVIGNVAKRGMDVVEAILNLGLPYI 94 (326)
T ss_dssp CEEEEE-ESSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCS-EEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred CEEEEE-cCCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCC-EEEECCCcCCCCHHHHHHHHcCCcEE
Confidence 345544 33223456789999999987532 123343 235 5566668985 45678889999887
No 27
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=47.35 E-value=38 Score=32.06 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHH
Q 017615 36 CWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 115 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l 115 (368)
|....-+.+.+.+++.+.+.-.+-..-++=-+|..++.|.++=-..+... . .+.++++.||+++||+|....+
T Consensus 119 ~st~g~~~~~i~~~l~~~~~~~i~~i~~~~~~p~~i~a~a~~i~~~l~~~----~-~~~~~~~~llfs~HG~P~~~~~-- 191 (310)
T 2h1v_A 119 TFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASM----P-EDERENAMLIVSAHSLPEKIKE-- 191 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHCSCEEEECCCCTTCHHHHHHHHHHHHHHHHHS----C-HHHHTSEEEEEEEECCBGGGGG--
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHHhc----c-cccCCCceEEEecCCCchhhcc--
Confidence 34444555555555544332345555556667777666654411111100 0 0012356899999999987543
Q ss_pred HhcCCcEEeCcCchhHHHHHHHHHHhhC
Q 017615 116 NNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 116 ~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
+ .-|+...+++.++.+.++
T Consensus 192 --~-------gDpY~~~~~~t~~~l~e~ 210 (310)
T 2h1v_A 192 --F-------GDPYPDQLHESAKLIAEG 210 (310)
T ss_dssp --G-------TCCHHHHHHHHHHHHHHH
T ss_pred --C-------CCChHHHHHHHHHHHHHH
Confidence 2 356888888887776653
No 28
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=47.27 E-value=38 Score=27.54 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=39.6
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
.+|++.+.|.+++.|-.+|-. |+-. +...++||.+... +.+++++.+.++++
T Consensus 66 ~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 66 ELADEKGVPFIFVEQQDDLGH------------------AAGLEVGSAAAAVTDAGEA-DADVEDIADKVEEL 119 (120)
T ss_dssp HHHHTTCCCEEEESCHHHHHH------------------HTTCSSCCSEEEESSCSSC-HHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEecCchH-HHHHHHHHHHHHhc
Confidence 789999999888888888743 3421 4678999976654 88899998888765
No 29
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=46.78 E-value=1.5e+02 Score=25.99 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=69.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.-. ++-.-|..+..-+++...+. + -++.++++-- ..++|. .+..|.+..+|.+|+.
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 79 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARHK-G-----YSVLLANTAE--DIVREREAVGQFFERRVDGLILAPSEGEHDY 79 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEECTT--CHHHHHHHHHHHHHTTCSEEEECCCSSCCHH
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHHC-C-----CEEEEEeCCC--CHHHHHHHHHHHHHCCCCEEEEeCCCCChHH
Confidence 579998865 44456777777776643332 2 2344443322 223333 3444555789999998
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 357 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~ 357 (368)
+.+++.+.|...+.+..+-..-..+..- ...+ ..--++| ..|.++||+-.|.+.-.+..+..-.+.+
T Consensus 80 ~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (291)
T 3egc_A 80 LRTELPKTFPIVAVNRELRIPGCGAVLSENVRGA--RTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRA 149 (291)
T ss_dssp HHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHH--HHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHhhccCCCEEEEecccCCCCCCEEEECcHHHH--HHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 4455678999999876542221111000 0111 1111222 2478999999888654444444444433
No 30
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=45.46 E-value=1.6e+02 Score=25.90 Aligned_cols=131 Identities=9% Similarity=-0.029 Sum_probs=69.7
Q ss_pred ceeEEEEcCCCC-hHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHh-hhhcCCEEEEe-------
Q 017615 218 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM-VEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eL-a~~~vD~miVV------- 288 (368)
..|+++.-+.-. ..-|.++.+-+.+...+ . +.++.++++--. .+.|..+.++ .+..+|.+|+.
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~-----g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 80 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLST-T-----QYHLVVTPHIHA--KDSMVPIRYILETGSADGVIISKIEPNDP 80 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTT-S-----SCEEEECCBSSG--GGTTHHHHHHHHHTCCSEEEEESCCTTCH
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHH-c-----CCEEEEecCCcc--hhHHHHHHHHHHcCCccEEEEecCCCCcH
Confidence 578888764321 14677787777654322 1 233444433222 2334444443 33689999998
Q ss_pred --hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 --EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-.....+..- ...+. .--++| ..|.++||+.+|.....+..+..-.+.+.
T Consensus 81 ~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~--~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~ 152 (288)
T 3gv0_A 81 RVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAY--EAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRG 152 (288)
T ss_dssp HHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHH--HHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHH--HHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHH
Confidence 4455778999999875432221111000 00011 111222 24789999999986655555555444443
No 31
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=45.01 E-value=59 Score=29.54 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=70.8
Q ss_pred ccchHHHHHHhcCCcceec-ceEEEE--------------eCCCCCcccHHHHHHHHHHHHhh-C---CCCceEEecccc
Q 017615 5 YTSDIIKKLKENGFEYTWG-NVKVKL--------------AESYGFCWGVERAVQIAYEARKQ-F---PEEKIWITNEII 65 (368)
Q Consensus 5 y~~~~~~~~~~~~~~~~~g-~mkI~l--------------A~~~GFC~GV~RAI~~a~~~~~~-~---~~~~Vy~lG~iI 65 (368)
..+++.++|++.|+....- .+++.- .......|==.+||+...+.+.+ + +..++|+.|+
T Consensus 25 ~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~~~~~~~~i~aVG~-- 102 (269)
T 3re1_A 25 ESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVWPQPPMQPWFSVGS-- 102 (269)
T ss_dssp HHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHCSSCCCSCEEESSH--
T ss_pred HHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEECH--
Confidence 3567899999998655443 233322 11223444445666665554432 1 1247999995
Q ss_pred cCHHHHHHHHhcCcEEecCCc-----cc-cccc-----cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 017615 66 HNPTVNKRLEEMAVQNIPVEE-----GK-KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (368)
Q Consensus 66 HN~~Vv~~L~~~GV~~v~~~~-----~~-~~l~-----el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa 125 (368)
..-+.|++.|+.+.-..+ ++ +.+. ..+...++++|+-+-.+...+.|+++|..|...
T Consensus 103 ---~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 170 (269)
T 3re1_A 103 ---ATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRERGVGVDYL 170 (269)
T ss_dssp ---HHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHCCCEEEEE
Confidence 556899999998643211 11 1111 223344678999998999999999999987443
No 32
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=44.78 E-value=1e+02 Score=29.98 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHHhhCCC--C-ceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHH
Q 017615 36 CWGVERAVQIAYEARKQFPE--E-KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 112 (368)
Q Consensus 36 C~GV~RAI~~a~~~~~~~~~--~-~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~ 112 (368)
|..+.-+++.+.+++++... . ++-+.-..=-+|.-++.|.+.=-..+...+ .+..++..+||+|||+|....
T Consensus 132 ~~Ttgs~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yI~a~a~~I~~~l~~~~-----~~~~~~~~LlfSaHgiP~~~~ 206 (359)
T 3hcn_A 132 CSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFP-----LEKRSEVVILFSAHSLPMSVV 206 (359)
T ss_dssp TTTHHHHHHHHHHHHHHTTCCCSSEEEEECCCTTCHHHHHHHHHHHHHHHTTSC-----TTTGGGCEEEEEEECCBHHHH
T ss_pred ccchhhHHHHHHHHHHHhccCCCCceEEeCCccCCHHHHHHHHHHHHHHHHhCC-----ccccCCcEEEEEcCCChHhhc
Confidence 44566666766666554211 1 355666666677777777655222222100 011123579999999999875
Q ss_pred HHHHhcCCcEEeCcCchhHHHHHHHHHHhhC
Q 017615 113 VTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 143 (368)
Q Consensus 113 ~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~ 143 (368)
+ +| -||...+++.++.++++
T Consensus 207 ~----~G-------DpY~~q~~~t~~lv~e~ 226 (359)
T 3hcn_A 207 N----RG-------DPYPQEVSATVQKVMER 226 (359)
T ss_dssp T----TT-------CSHHHHHHHHHHHHHHH
T ss_pred c----cC-------CCHHHHHHHHHHHHHHH
Confidence 3 45 48888888888877663
No 33
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=44.44 E-value=84 Score=28.42 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=49.8
Q ss_pred hHHHHHHhcCCc-cee----------cceEEEEeCCCCCcccHHHHHHHHHHHHhhCCC--CceEEecccccCHHHHHHH
Q 017615 8 DIIKKLKENGFE-YTW----------GNVKVKLAESYGFCWGVERAVQIAYEARKQFPE--EKIWITNEIIHNPTVNKRL 74 (368)
Q Consensus 8 ~~~~~~~~~~~~-~~~----------g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~--~~Vy~lG~iIHN~~Vv~~L 74 (368)
-|+++|+++|.. +.. |.-+|++..-+=++..+.+.|..+...+++... .++.+..++--+|..++.|
T Consensus 52 ~i~~~l~~~~~~~P~i~~al~~l~~~G~~~ivV~Pl~l~~G~~~~di~~~~~~l~~~~~~~~~i~~~~pl~~~p~~i~~l 131 (269)
T 2xvy_A 52 MIRAKLRAEGIAAPSPAEALAGMAEEGFTHVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAV 131 (269)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTCCEEEEEECCSSSSHHHHHHHHHHHHHTTCTTSCSEEEEECCSSCSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHCCCCEEEEEeceeeccHhHHHHHHHHHHHHHhhccCCeEEEeCCCCCCHHHHHHH
Confidence 467778777532 111 445676655544433343333222111433221 3577777888888877776
Q ss_pred HhcCcEEecCCccccccccccCCCEEEEcCCCCCH
Q 017615 75 EEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV 109 (368)
Q Consensus 75 ~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~ 109 (368)
.++=-..+.. ..++++.||+.+||.|.
T Consensus 132 a~~i~~~~~~--------~~~~~~~lll~~HGs~~ 158 (269)
T 2xvy_A 132 AEALVASLPA--------DRKPGEPVVFMGHGTPH 158 (269)
T ss_dssp HHHHHHHSCT--------TCCTTCCEEEEECCCSS
T ss_pred HHHHHHhchh--------hccCCceEEEEECCCCh
Confidence 5441111110 01234679999999996
No 34
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=43.77 E-value=1.6e+02 Score=25.55 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=64.0
Q ss_pred ceeEEEEcCC-CChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV------- 288 (368)
.+|+++...+ ++..-|..+.+-+.+...+. + .++.++++ ....++|. .++.|.+..+|.+|+.
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~ 91 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEK-G-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVD 91 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHT-T-----CEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHH
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCChH
Confidence 5799987653 44455677777776543222 2 23444332 22233433 4555655789999987
Q ss_pred --hhhhc-cCCCeEEeCCCCCcCCCCcchhhh-ccchh-hhhcccc-cCCCcEEEEeecCCCcHHHHHHH
Q 017615 289 --EIAED-RGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWL-PKGQITIGITSGASTPDKAVEDV 352 (368)
Q Consensus 289 --eia~~-~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~~~~~~l-~~~~~~VGITAGASTP~~lI~eV 352 (368)
+.+.+ .+.|...+.+..+=. .+.+-. -+.+. ..--+|| ..|.++||+..|.....+..+..
T Consensus 92 ~~~~l~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~ 158 (296)
T 3brq_A 92 EIDDIIDAHSQPIMVLNRRLRKN---SSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERL 158 (296)
T ss_dssp HHHHHHHTCSSCEEEESCCCSSS---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEccccCCC---CCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHH
Confidence 33445 688998887643211 111100 00011 1111333 23789999999875444443333
No 35
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=43.24 E-value=1.1e+02 Score=23.37 Aligned_cols=90 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe-------hhhhccC--
Q 017615 225 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV-------EIAEDRG-- 295 (368)
Q Consensus 225 QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV-------eia~~~~-- 295 (368)
.+..+.++|+++++..+. + .-=+.++.+.|..-+.=...+.+|+..--++.++- +++++.+
T Consensus 14 ~~~~t~~~f~~~l~~~~~----k------~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~ 83 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGD----K------LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK 83 (116)
T ss_dssp BCCCCHHHHHHHHHHHTT----S------CEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHhcCC----C------EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCc
Confidence 566677888776543221 1 11234789999998888888899974323533322 7777665
Q ss_pred -CCeEEeCCCCCcCCCCcchhhhccchhhhhcccccCCCcEEEEeecCCCcHHHHHHHH
Q 017615 296 -IPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVL 353 (368)
Q Consensus 296 -~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~~~~~VGITAGASTP~~lI~eVi 353 (368)
.||+.+ | .+.+.+.-..|. +++.+.+.+-
T Consensus 84 ~~Pt~~~---------------------------~-~~G~~~~~~~G~-~~~~l~~~l~ 113 (116)
T 3qfa_C 84 SMPTFQF---------------------------F-KKGQKVGEFSGA-NKEKLEATIN 113 (116)
T ss_dssp SSSEEEE---------------------------E-SSSSEEEEEESC-CHHHHHHHHH
T ss_pred cccEEEE---------------------------E-eCCeEEEEEcCC-CHHHHHHHHH
Confidence 344433 2 234556667788 7766655443
No 36
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=42.89 E-value=36 Score=27.94 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=22.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCcEEeCcCchhH
Q 017615 100 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 131 (368)
Q Consensus 100 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~ 131 (368)
|++.+-...++..+.+++.|++++. -|..|.
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv~ 116 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLVM 116 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeEE
Confidence 4444434578888888888888886 887664
No 37
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=42.66 E-value=61 Score=29.60 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=67.0
Q ss_pred chHHHHHHhcCCcceec-ceEEEEe-------------CCCCCcccHHHHHHHHHHHHhhC--------------CCCce
Q 017615 7 SDIIKKLKENGFEYTWG-NVKVKLA-------------ESYGFCWGVERAVQIAYEARKQF--------------PEEKI 58 (368)
Q Consensus 7 ~~~~~~~~~~~~~~~~g-~mkI~lA-------------~~~GFC~GV~RAI~~a~~~~~~~--------------~~~~V 58 (368)
+++.++|++.|+....- .++|.-. ...+..|==.+||+...+.+.+. ++.++
T Consensus 38 ~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~naV~~~~~~l~~~~~~~~~~~d~~~~l~~~~i 117 (286)
T 1jr2_A 38 DPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSV 117 (286)
T ss_dssp CHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEE
T ss_pred cHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHHHHHHHHHHHhccccccchhhHHHHhccCcE
Confidence 88999999999765443 2344321 11223333344444443332211 13579
Q ss_pred EEecccccCHHHHHHHHhcCcEEecCCcc-ccccc------cccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 017615 59 WITNEIIHNPTVNKRLEEMAVQNIPVEEG-KKQFD------VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (368)
Q Consensus 59 y~lG~iIHN~~Vv~~L~~~GV~~v~~~~~-~~~l~------el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa 125 (368)
|+.|+ ..-+.|++.|+..+-.... .+.|- ..+...++++|+-+-.+...+.|+++|..|...
T Consensus 118 ~aVG~-----~Ta~aL~~~G~~~~~p~~~~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~ 186 (286)
T 1jr2_A 118 YVVGN-----ATASLVSKIGLDTEGETCGNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESI 186 (286)
T ss_dssp EECSH-----HHHHHHHHTTCCCSCCSCSSHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEE
T ss_pred EEECH-----HHHHHHHHcCCCcCCCCccCHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEE
Confidence 99994 5668899999986321111 01111 122345778888888889999999999977443
No 38
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=42.32 E-value=1.4e+02 Score=27.90 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=65.9
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHH-------
Q 017615 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN------- 116 (368)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~------- 116 (368)
-||.+.++. +-+|+++- .|+.-.+.|.+.|....++. .++-.+.-|||..=.-++.+.+-+.
T Consensus 17 ~mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s~------~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~ 85 (300)
T 3obb_A 17 PMATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARSA------RDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85 (300)
T ss_dssp HHHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSSH------HHHHTTCSEEEECCSCHHHHHHHHHSSSSSTT
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCCH------HHHHhcCCceeecCCchHHHHHHHhchhhhhh
Confidence 366666664 34677664 47889999999999998753 4443333366666566666666553
Q ss_pred --hcCCcEEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 117 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 117 --~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
+.|-.+||.|=-......+.++.+.++|-..+
T Consensus 86 ~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp SCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 24678999988888899999999999986655
No 39
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=41.52 E-value=1.7e+02 Score=25.12 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=69.6
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhc-CCEEEEe--------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK-VDLILVV-------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~-vD~miVV-------- 288 (368)
+|+++.-.. +..-|..+.+-+++...+. + -++.++++-.....++| +.++.|.+.. +|.+|+.
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADEA-G-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLT 74 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHHH-T-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHHc-C-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH
Confidence 577776543 3345677777776543332 2 23444443222333444 4456665567 9999998
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCC-Ccchhh-hccchh-h-hhcccccC--CCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGEL-V-EKENWLPK--GQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~-~~~~~~-~~~~~~-~-~~~~~l~~--~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+.+.+.|...+.+..+-... ..+..- ...+.. . .-.+.+ . |.++||+..|...-....+..-.+...+
T Consensus 75 ~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 153 (276)
T 3ksm_A 75 PSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNASTDQREQGFLDVL 153 (276)
T ss_dssp HHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhc-CcCCCceEEEEEcCCCchhHHHHHHHHHHHH
Confidence 4455678999999765432210 111000 011111 0 001112 2 7899999998755555555554444443
No 40
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.37 E-value=1.7e+02 Score=25.10 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=71.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++..+. +..-|..+.+-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 73 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARAR-G-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPPEDD 73 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCC
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccccHH
Confidence 4788887764 4456777887777643332 2 23444432 22234443 3444545789999997
Q ss_pred --hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 --EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+++.+.|...+.+..+-..-..+..- ...+ ..--++| ..|.++||+.+|.+.-.+..+....+.+.+
T Consensus 74 ~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 74 SYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDAS--RQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp HHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHH--HHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEccCCCccccCEEEEchHHHH--HHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 4455678999999875432110001000 0001 1111222 247899999998766555555554444443
No 41
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=41.23 E-value=1e+02 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=22.8
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH---HhcCCcEEeCcCc
Q 017615 94 VNKGDV-VVLPAFGAAVEEMVTL---NNKNVQIVDTTCP 128 (368)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l---~~~g~~iiDaTCP 128 (368)
+.++|. ++|+.-|-++++.+.+ +++|..+|=-|+.
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 456776 5699999999886654 4455555544443
No 42
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=40.81 E-value=1.8e+02 Score=25.12 Aligned_cols=127 Identities=9% Similarity=0.108 Sum_probs=66.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++... ++..-|.++.+-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 74 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALNKA-G-----YQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRT 74 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHHHT-S-----CEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHH
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHHHC-C-----CEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHH
Confidence 478888765 34456677777776543322 2 23333322 22334443 3455555789999987
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhhh-ccchh-hhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 356 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l 356 (368)
+.+++.+.|...+.+..+-.. +.+-. -+.+. ..--++| ..|.++||+-+|.....+..+..-.+.
T Consensus 75 ~~~l~~~~iPvV~~~~~~~~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 143 (275)
T 3d8u_A 75 HQLLEASNTPVLEIAELSSKAS---YLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQ 143 (275)
T ss_dssp HHHHHHHTCCEEEESSSCSSSS---SEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeeccCCCC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHH
Confidence 344567889999876432111 11100 00011 1111233 237899999998755444444444333
No 43
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=40.46 E-value=1.2e+02 Score=29.56 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=42.1
Q ss_pred eEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHH
Q 017615 58 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSV 137 (368)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v 137 (368)
+-..-+.=.+|..++.|.++=-..+...+ .+.+++..||++|||+|....+ +| -|+...+++.+
T Consensus 162 i~~i~~~~~~p~~I~ala~~I~~~l~~~~-----~~~~~~~~llfSaHglP~~~~~----~G-------DpY~~q~~~ta 225 (362)
T 1lbq_A 162 WSVIDRWPTNEGLIKAFSENITKKLQEFP-----QPVRDKVVLLFSAHSLPMDVVN----TG-------DAYPAEVAATV 225 (362)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHHHHTSC-----STTGGGCEEEEEEECCBHHHHT----TT-------CSHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhcC-----cccCCCeEEEEecCCCcccccc----CC-------CcHHHHHHHHH
Confidence 34666666677777776554111111100 0011234899999999988763 34 57888888888
Q ss_pred HHHhhC
Q 017615 138 EKHKKG 143 (368)
Q Consensus 138 ~~~~~~ 143 (368)
+.++++
T Consensus 226 ~ll~e~ 231 (362)
T 1lbq_A 226 YNIMQK 231 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 44
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=39.39 E-value=73 Score=27.79 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=35.3
Q ss_pred cCCcceecceEEEEeCCCCCccc---HHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcC--cEEecCC
Q 017615 16 NGFEYTWGNVKVKLAESYGFCWG---VERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMA--VQNIPVE 85 (368)
Q Consensus 16 ~~~~~~~g~mkI~lA~~~GFC~G---V~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~~ 85 (368)
++.+..-++|+|.+..-.=.+.. ..+++ .+.++..+...|+.+|+|++ +.+++.|++.+ +.+|..+
T Consensus 17 ~~~~~~~m~m~i~~iSD~H~~~~~~~l~~~l---~~~~~~~~~D~vi~~GDl~~-~~~l~~l~~~~~~v~~V~GN 87 (215)
T 2a22_A 17 RGSSSTDFGDLVLLIGDLKIPYGAKELPSNF---RELLATDKINYVLCTGNVCS-QEYVEMLKNITKNVYIVSGD 87 (215)
T ss_dssp ------CCCEEEEEECCCCTTTTCSSCCGGG---HHHHHCTTCCEEEECSCCCC-HHHHHHHHHHCSCEEECCCT
T ss_pred CCCCccccCcEEEEEecCCCCCChHHHHHHH---HHHHhcCCCCEEEECCCCCC-HHHHHHHHHcCCCEEEecCC
Confidence 34444444688876543333332 11222 22222222246999999996 78899999987 5566543
No 45
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.14 E-value=2e+02 Score=25.34 Aligned_cols=130 Identities=10% Similarity=0.018 Sum_probs=69.6
Q ss_pred ceeEEEEc----CCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHH-HHhhhhcCCEEEEe----
Q 017615 218 VKVGIANQ----TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVV---- 288 (368)
Q Consensus 218 ~kv~vvsQ----TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~eLa~~~vD~miVV---- 288 (368)
..|+++.- ..++-.-|.++.+-+.+...+. +.++.++++- ...++|... ..|.+..+|.+|+.
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~------g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH------GYGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT------TCEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHC------CCEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 57998862 2334456777777776543322 2344444432 233444443 44444689999998
Q ss_pred -----hhhhccCCCeEEeCCCCCcC--CCCcch--hhhccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 -----EIAEDRGIPSYWIDSEKRIG--PGNKIA--YKLMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 -----eia~~~~~~t~~Ie~~~eL~--~~~~~~--~~~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-. ....+. +. ..+.. --++| ..|.++||+..|.....+..+..-.+.+.
T Consensus 80 ~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~-~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~a 156 (295)
T 3hcw_A 80 NDPIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNI-LASEN--LTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETV 156 (295)
T ss_dssp TCHHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHH-HHHHH--HHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhCCCCEEEECCCCccccCCceEEecCcH-HHHHH--HHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHH
Confidence 44556789999998754321 101110 00 00111 11222 23789999999876655555544444443
No 46
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=39.02 E-value=1.5e+02 Score=26.06 Aligned_cols=129 Identities=8% Similarity=-0.010 Sum_probs=64.7
Q ss_pred ceeEEEEcCCC---ChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe-----
Q 017615 218 VKVGIANQTTM---LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV----- 288 (368)
Q Consensus 218 ~kv~vvsQTT~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV----- 288 (368)
..|+++.-+.+ +..-|.++.+-+.+...+. + .++.++++- ...++| +.++.|.+..+|.+|+.
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-N-----YFVLPFPFS--EDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-T-----CEEEECCCC--SSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHc-C-----CEEEEEeCC--CchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 47888875412 3345667777766543322 2 234333321 112222 33555555789999998
Q ss_pred ----hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 017615 289 ----EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 356 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l 356 (368)
+.+++.+.|...+.+..+-..-..+..- ...+ ..--+|| ..|.++||+-.|.....+..+..-.+.
T Consensus 77 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 148 (287)
T 3bbl_A 77 DPRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGT--RQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYL 148 (287)
T ss_dssp CHHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHH--HHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHH--HHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 3345678899999764321110011000 0001 1111223 137899999998765444444443333
No 47
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=38.89 E-value=76 Score=29.49 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=57.5
Q ss_pred HHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHH-------HHH
Q 017615 44 QIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMV-------TLN 116 (368)
Q Consensus 44 ~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~-------~l~ 116 (368)
-||...++. +-+|+++- -|+..++.|.+.|....++. .++-.++-|||-.=.-++.+.+ ...
T Consensus 19 ~mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s~------~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~ 87 (297)
T 4gbj_A 19 PIAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVENA------IDAITPGGIVFSVLADDAAVEELFSMELVEKL 87 (297)
T ss_dssp HHHHHHHHT--TCEEEEC----------CTTTTTTCEECSSG------GGGCCTTCEEEECCSSHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCCH------HHHHhcCCceeeeccchhhHHHHHHHHHHhhc
Confidence 356666654 23577654 36788899999999998753 3443333355555444443332 223
Q ss_pred hcCCcEEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 117 NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 117 ~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
.+|-.+||.+=-.....++.++.+.++|...+
T Consensus 88 ~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 88 GKDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp CTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 56778899888888889999999999987655
No 48
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=37.93 E-value=2.2e+02 Score=25.50 Aligned_cols=127 Identities=15% Similarity=0.073 Sum_probs=66.1
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc-CcccHHHHHHHH-HHHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICDATQERQD-AMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-nTIC~AT~~RQ~-a~~eLa~~~vD~miVV------- 288 (368)
++|+++.-++ +..-|..+.+-+++...+. + -++.+. ++ .....+|. .+..|.++.+|++|+.
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~~-g-----~~~~~~~~~--~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKAL-G-----IDVTYDGPT--EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHHH-T-----CEEEECCCS--SCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHHh-C-----CEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 4789887653 4456777777776543322 2 233332 22 22334443 3455555789999987
Q ss_pred ----hhhhccCCCeEEeCCCCCcC-CCCcchhh--hccchhhhhccccc----CCCcEEEEeecCCCcHHHHHHHHHH
Q 017615 289 ----EIAEDRGIPSYWIDSEKRIG-PGNKIAYK--LMHGELVEKENWLP----KGQITIGITSGASTPDKAVEDVLKK 355 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~eL~-~~~~~~~~--~~~~~~~~~~~~l~----~~~~~VGITAGASTP~~lI~eVi~~ 355 (368)
+.+++.+.|...+++.-.-. ....+.-. ...+.. .-++|- .+.++|++-.|..+-.+.....-.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~--~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSM--LVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHH--HHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHH--HHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 44566789998887643211 11111000 011111 112221 2688999999976654444433333
No 49
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=37.90 E-value=1.6e+02 Score=28.18 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=34.0
Q ss_pred ccccccCCCEEEEcCC-CCCHHHHHHHHhcCCcEEeC--------cCchhHH
Q 017615 90 QFDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSK 132 (368)
Q Consensus 90 ~l~el~~g~~VIIrAH-Gv~~~~~~~l~~~g~~iiDa--------TCP~V~k 132 (368)
++..+.+|++++...| ++.++..+.+.++|+++|+. ..|.+..
T Consensus 81 e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~ 132 (377)
T 2vhw_A 81 EYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP 132 (377)
T ss_dssp GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH
T ss_pred HHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc
Confidence 4455667888888888 57899999999999999955 5676653
No 50
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=37.88 E-value=43 Score=28.64 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=40.3
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEee-cCCCcHHHHHHHHHHHHhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITS-GASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITA-GASTP~~lI~eVi~~l~~~ 359 (368)
.+|++.+.|.+++.+-.+|-. |.-. ....++||. |.|.=..+++++...++.+
T Consensus 87 ~lC~~~~VP~~~v~sk~eLG~------------------a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 87 LLCEDKNVPYVFVRSKQALGR------------------ACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 142 (144)
T ss_dssp SSCGGGCCCCEEESCSHHHHH------------------HHTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEECCHHHHHH------------------HhCCCCceEEEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 789999999999998888743 3311 234599985 7888888888888887765
No 51
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=36.76 E-value=92 Score=25.04 Aligned_cols=74 Identities=14% Similarity=-0.021 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCce
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYT 146 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~ 146 (368)
.+.++.|+++|+.+.= ++ -+-.......++..|+. .+|...|...-+....+++.-....
T Consensus 42 ~~~l~~l~~~g~~~~i------------------~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAV------------------IS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEEE------------------EE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEEE------------------Ee-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHHH
Confidence 4678888888876441 11 12245666777777864 5888888888888888877666778
Q ss_pred EEEEecCCCcceeee
Q 017615 147 SIIHGKYSHEETVAT 161 (368)
Q Consensus 147 IIIiG~~~HpEv~gi 161 (368)
++.+||.. .-+.+.
T Consensus 103 ~~~vGD~~-~Di~~a 116 (162)
T 2p9j_A 103 IGFIGDDV-VDIEVM 116 (162)
T ss_dssp EEEEECSG-GGHHHH
T ss_pred EEEECCCH-HHHHHH
Confidence 99999875 444433
No 52
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=36.61 E-value=53 Score=27.58 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=42.2
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEee-cCCCcHHHHHHHHHHHHhhhhhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITS-GASTPDKAVEDVLKKVFEIKREE 363 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITA-GASTP~~lI~eVi~~l~~~~~~~ 363 (368)
.+|++.+.|.+++.+-.+|-. |.-. ++..++||- |.|.=..+++++...++.+..+|
T Consensus 69 ~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~~~~~ 128 (134)
T 2ale_A 69 LLCEDKNVPYVFVPSRVALGR------------------ACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLLILE 128 (134)
T ss_dssp HHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHhHHHh
Confidence 789999999999988887743 3311 234788884 67888899999988888765443
No 53
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=36.22 E-value=2e+02 Score=24.49 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhCCC-C-ceEEecccccCHHHHHHHHhcCcEEecCCccccccc------------cccCCCEEEEcC
Q 017615 39 VERAVQIAYEARKQFPE-E-KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD------------VVNKGDVVVLPA 104 (368)
Q Consensus 39 V~RAI~~a~~~~~~~~~-~-~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~------------el~~g~~VIIrA 104 (368)
+++=|..+.+++++..+ . +.|..----.|+.+.+.|++.|..++.-.-+..|+. .+.+|++|++
T Consensus 77 ~~~ei~~~~~~l~~~~G~~~~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~-- 154 (195)
T 2cc0_A 77 MDSEISRTQQAIAGAGGGTPKLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM-- 154 (195)
T ss_dssp HHHHHHHHHHHHHHTTSCCCSEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--
Confidence 45555566666665322 2 355544446799999999999999885211111111 1223333332
Q ss_pred CCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEEecC
Q 017615 105 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 105 HGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
|..++ .-+..+-..+..+.++||+.+-+.+.
T Consensus 155 Hd~~~------------------~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 155 HDWPA------------------NTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ESSCH------------------HHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred CCCch------------------hHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 33322 13456777888899999998877644
No 54
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.20 E-value=2.2e+02 Score=24.94 Aligned_cols=127 Identities=13% Similarity=0.060 Sum_probs=66.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH----HHHHhhhhcCCEEEEe-----
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD----AMYKMVEEKVDLILVV----- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~----a~~eLa~~~vD~miVV----- 288 (368)
..|+++.-. ++-.-|..+.+-+.+...+. + .++.++++- ...++|. .+..|.+..+|.+|+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRAV-H-----RHVVVATGC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEECCC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 578988754 34456777777776543322 2 234333321 1123333 4556655789999997
Q ss_pred ----hhhhccCCCeEEeCCCCCcCCCCcchhhh-ccchh-hhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 017615 289 ----EIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 356 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l 356 (368)
+.+++.+.|...+.+..+-. .+.+-. -+.+. ..--++| ..|.++||+-.|.+.-.+..+....+.
T Consensus 80 ~~~~~~l~~~~iPvV~~~~~~~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 151 (290)
T 2rgy_A 80 DEDLDELHRMHPKMVFLNRAFDAL---PDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFF 151 (290)
T ss_dssp HHHHHHHHHHCSSEEEESSCCTTS---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEccccCCC---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHH
Confidence 33445788999887643211 111110 00000 1111222 237899999998755444444443333
No 55
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=36.17 E-value=1.4e+02 Score=27.66 Aligned_cols=85 Identities=8% Similarity=-0.017 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHHHHHhhCC-CCceEEecccc-cCHHHHHHHHhcCcEEecCCcccc-------------------cccc
Q 017615 35 FCWGVERAVQIAYEARKQFP-EEKIWITNEII-HNPTVNKRLEEMAVQNIPVEEGKK-------------------QFDV 93 (368)
Q Consensus 35 FC~GV~RAI~~a~~~~~~~~-~~~Vy~lG~iI-HN~~Vv~~L~~~GV~~v~~~~~~~-------------------~l~e 93 (368)
|-+|-+.....+.+++++++ ....|+.|..+ .||.+++++.+.|-.+-...-... .+.+
T Consensus 75 fDdG~~~~~~~ll~iL~~~~v~aTfFv~g~~~~~~p~~v~~i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~ 154 (308)
T 3cl6_A 75 YEYGSRAGVWRILKLFKAFDIPLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTE 154 (308)
T ss_dssp HHHHHHTHHHHHHHHHHHTTCCCEEEECHHHHHHCHHHHHHHHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhHHHHHHHHHHcCCCEEEEeEHHHHHHCHHHHHHHHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 34455555555666666653 23689998865 799999999999976654311000 1111
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHhcC
Q 017615 94 VNKGDVVVLPAFGAAVEEMVTLNNKN 119 (368)
Q Consensus 94 l~~g~~VIIrAHGv~~~~~~~l~~~g 119 (368)
+..-....+|+-..++.+.+.|++.|
T Consensus 155 ~~G~~p~g~r~~~~~~~~~~~l~~~G 180 (308)
T 3cl6_A 155 LTGERPLGWYTGRTGPNTRRLVMEEG 180 (308)
T ss_dssp HHSSCCSEECCSSCCTTHHHHHHHHC
T ss_pred HhCCCcceEECCCCCHHHHHHHHHCC
Confidence 21112345777666889999999988
No 56
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=35.48 E-value=2.3e+02 Score=24.92 Aligned_cols=135 Identities=6% Similarity=-0.124 Sum_probs=72.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
.+|+++.-.. +..-|..+.+-+++...+ .+ -++.+.++-=+...++| +.+..|.+..+|.+|+.
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 4 DKYYLITHGS-QDPYWTSLFQGAKKAAEE-LK-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CEEEEECSCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTH
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHH-hC-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 3788888766 455677787777764332 22 23444442200122333 34555555789999987
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCC-Ccchhhh-ccchh-hhhcccc-cCC--CcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPG-NKIAYKL-MHGEL-VEKENWL-PKG--QITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~-~~~~~~~-~~~~~-~~~~~~l-~~~--~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+++.|.|...+.+..+-... ..+.+-. -+.+. ..--+|| ..+ .++|++..|.+.-.+..+..-.+...+
T Consensus 77 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l 156 (297)
T 3rot_A 77 KSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTIL 156 (297)
T ss_dssp HHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 4455678999999876543100 0011110 00000 1111222 124 889999999877666665555554443
No 57
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.42 E-value=1.2e+02 Score=26.71 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=47.8
Q ss_pred eeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe---------
Q 017615 219 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV--------- 288 (368)
Q Consensus 219 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV--------- 288 (368)
+|+++..+ ++-.-|..+.+-+++...+. + -++.+.++ + ..++| +.+..|.+..+|.+|+.
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 73 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKDL-G-----FEVIKIAV--P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSA 73 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----EEEEEEEC--C-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHHc-C-----CEEEEeCC--C-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHH
Confidence 68888764 44556777877776643332 2 23445554 2 22333 34555655789999998
Q ss_pred --hhhhccCCCeEEeCC
Q 017615 289 --EIAEDRGIPSYWIDS 303 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~ 303 (368)
+.+++.+.|...+.+
T Consensus 74 ~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 74 IVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHTTCEEEEESS
T ss_pred HHHHHHHCCCcEEEeCC
Confidence 345677899999985
No 58
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=35.24 E-value=18 Score=29.53 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhC--CCCceEEeccccc----CHH---HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHH
Q 017615 40 ERAVQIAYEARKQF--PEEKIWITNEIIH----NPT---VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE 110 (368)
Q Consensus 40 ~RAI~~a~~~~~~~--~~~~Vy~lG~iIH----N~~---Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~ 110 (368)
..|+..|.+++++. .+=.|+..|+=++ ++. ..+.|.+.|+.+.- ...-...+|+.++
T Consensus 24 ~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~~a--------------C~~Ca~~~gv~~~ 89 (117)
T 2fb6_A 24 NMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITIEA--------------CQDCCENFGVASI 89 (117)
T ss_dssp HTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEEEE--------------EHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeEEE--------------eHHHHHHcCCcHH
Confidence 35888888888863 1236999999887 333 33444555655441 0112345777544
Q ss_pred HHHHHHhcCCcEEeCcCchhHHHHHHHHHHhhCCceEEEE
Q 017615 111 EMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (368)
Q Consensus 111 ~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~IIIi 150 (368)
++..|+.++.+- ....++.++||+||.+
T Consensus 90 ----l~~~gi~l~~~g--------~~l~~~v~~g~~vitF 117 (117)
T 2fb6_A 90 ----ITNLGITVRYMG--------IPLTEYLKNGEKILSI 117 (117)
T ss_dssp ----HHHTTCEEECCH--------HHHHHHHHTTCEEEEC
T ss_pred ----HHhCCceEcCCc--------HHHHHHHHcCCEEeeC
Confidence 445688888643 3456778899998853
No 59
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=35.17 E-value=1.3e+02 Score=30.03 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=38.3
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 017615 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~--~~~~~l~~~g~~ii 123 (368)
-.|... +.--++ ..+.|++.|+.+...- +.+.+..-| +|+-+=|+|+ ..+..++++|+.|+
T Consensus 47 ~~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 47 YQISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp CEEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CeEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 345543 333344 5688999999987542 122343345 4455568986 56777888998886
No 60
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=33.91 E-value=2.1e+02 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhC-CCC--ceEEecccccCHHHHHHHHhcCcEEec
Q 017615 40 ERAVQIAYEARKQF-PEE--KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 40 ~RAI~~a~~~~~~~-~~~--~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
++=|..+.+++++. +.. +.|..----.|+.+.+.|+++|..++.
T Consensus 129 ~~ei~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 129 REELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCEECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 34444445555431 112 244433345699999999999999774
No 61
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.52 E-value=2.6e+02 Score=24.86 Aligned_cols=129 Identities=20% Similarity=0.136 Sum_probs=70.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
.+|+++.-+. +-.-|.++.+-+++...+. + -++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~ 74 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQEA-G-----YKTDLQYA--DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS 74 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHHc-C-----CEEEEeeC--CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH
Confidence 4788887654 3446777877777643322 2 23444442 33334443 3455555789999998
Q ss_pred ---hhhhccCCCeEEeCCCCCc-CCC-Ccch--hhhccchhhhhccccc--------CCCcEEEEeecCCCcHHHHHHHH
Q 017615 289 ---EIAEDRGIPSYWIDSEKRI-GPG-NKIA--YKLMHGELVEKENWLP--------KGQITIGITSGASTPDKAVEDVL 353 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL-~~~-~~~~--~~~~~~~~~~~~~~l~--------~~~~~VGITAGASTP~~lI~eVi 353 (368)
+.+++.|.|...+.+..+= +.. ..+. +. ..+ ..--++|- .|.++|++.+|...-....+...
T Consensus 75 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~V~~D~~-~~g--~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~ 151 (330)
T 3uug_A 75 DVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNF-QVG--VLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYD 151 (330)
T ss_dssp HHHHHHHHTTCEEEEESSCCCSCTTCCEEEEECHH-HHH--HHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCceeEEEEeCHH-HHH--HHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHH
Confidence 4455778999999875432 110 0110 00 011 11112221 26779999998766555555554
Q ss_pred HHHHh
Q 017615 354 KKVFE 358 (368)
Q Consensus 354 ~~l~~ 358 (368)
.+...
T Consensus 152 Gf~~a 156 (330)
T 3uug_A 152 GAMSV 156 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 62
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=33.32 E-value=52 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.301 Sum_probs=39.0
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEeecCCCcHHHHHHHHHHHHhhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGASTPDKAVEDVLKKVFEIK 360 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITAGASTP~~lI~eVi~~l~~~~ 360 (368)
.+|++.+.|.+++.|-.+|-. |+-. +...++||.+... +.+.+.+.+.+++++
T Consensus 64 ~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~l~ 118 (119)
T 1rlg_A 64 LLCEEKNVPYIYVKSKNDLGR------------------AVGIEVPCASAAIINEGEL-RKELGSLVEKIKGLQ 118 (119)
T ss_dssp HHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECGGG-HHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCEEEeCCHHHHHH------------------HhCCCCCeEEEEEecCchH-HHHHHHHHHHHHHhh
Confidence 789999999888888888743 3421 4678999977544 578888888877664
No 63
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.06 E-value=2.8e+02 Score=25.14 Aligned_cols=130 Identities=11% Similarity=0.028 Sum_probs=69.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe---hhhhc
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV---EIAED 293 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV---eia~~ 293 (368)
..|+++... ++-.-|.++.+-+.+...+. + .++.++++-= .++| +.+..|.+..+|.+|+. +.+.+
T Consensus 65 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~ 134 (333)
T 3jvd_A 65 ALVGVIVPD-LSNEYYSESLQTIQQDLKAA-G-----YQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPVVGSIAP 134 (333)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCCTTCCC-
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHHC-C-----CEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcchHHHHhh
Confidence 578888765 44556777777776643332 2 2344433322 3333 34445545789999997 55567
Q ss_pred cCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 294 RGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 294 ~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
.+.|...+.+..+-.....+..- ...+.. --++| ..|.++||+-+|.....+..+..-.+...+
T Consensus 135 ~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al 200 (333)
T 3jvd_A 135 EGIPMVQLTRGELGPGFPRVLCDDEAGFFQ--LTESVLGGSGMNIAALVGEESLSTTQERMRGISHAA 200 (333)
T ss_dssp CCSCEEEECC----CCSCEEEECHHHHHHH--HHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEECccCCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHH
Confidence 78999999765431111111000 011111 11222 248999999999866555555555544433
No 64
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=32.67 E-value=2.5e+02 Score=24.53 Aligned_cols=130 Identities=9% Similarity=0.022 Sum_probs=66.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++... ++..-|..+.+-+.+...+. + .++.++++- ...++|. .+..|.+..+|.+|+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 91 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQARQR-G-----YQLLIACSE--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHP 91 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTCH
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHHHC-C-----CEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHH
Confidence 579998764 44456777777776543322 2 233333321 1223333 3555555789999998
Q ss_pred --hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 --EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-.....+..- ...+ ..--+|| ..|.++||+..|.....+..+....+.+.
T Consensus 92 ~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~ 163 (293)
T 2iks_A 92 FYQRWANDPFPIVALDRALDREHFTSVVGADQDDA--EMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTA 163 (293)
T ss_dssp HHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHH--HHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHH--HHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHH
Confidence 2233567888888764321110001000 0011 1111233 23789999999875544444444444433
No 65
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=32.56 E-value=55 Score=29.73 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred hcCCEEEEe-----------hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC----CCcEEEEeecCCC
Q 017615 280 EKVDLILVV-----------EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK----GQITIGITSGAST 344 (368)
Q Consensus 280 ~~vD~miVV-----------eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~----~~~~VGITAGAST 344 (368)
..+|++|.. +.|+ .|.+ .-+-+.-+++. -+||+ +.-.||||+|...
T Consensus 90 ~~adLVIaAT~d~~~N~~I~~~ak-~gi~-VNvvD~p~~~~-----------------f~~Paiv~rg~l~iaIST~G~s 150 (223)
T 3dfz_A 90 LNVFFIVVATNDQAVNKFVKQHIK-NDQL-VNMASSFSDGN-----------------IQIPAQFSRGRLSLAISTDGAS 150 (223)
T ss_dssp SSCSEEEECCCCTHHHHHHHHHSC-TTCE-EEC-----CCS-----------------EECCEEEEETTEEEEEECTTSC
T ss_pred CCCCEEEECCCCHHHHHHHHHHHh-CCCE-EEEeCCcccCe-----------------EEEeeEEEeCCEEEEEECCCCC
Q ss_pred cHHHHHHHHHHHHhhhhhhhhhcC
Q 017615 345 PDKAVEDVLKKVFEIKREEALQLA 368 (368)
Q Consensus 345 P~~lI~eVi~~l~~~~~~~~~~~~ 368 (368)
| .+-..+-+.|++..+++.-+++
T Consensus 151 P-~la~~iR~~ie~~lp~~~~~~~ 173 (223)
T 3dfz_A 151 P-LLTKRIKEDLSSNYDESYTQYT 173 (223)
T ss_dssp H-HHHHHHHHHHHHHSCTHHHHHH
T ss_pred c-HHHHHHHHHHHHHccHHHHHHH
No 66
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=32.16 E-value=63 Score=26.35 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=38.0
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEeecCCCcHHHHHHHHHHHHhhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGASTPDKAVEDVLKKVFEIK 360 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITAGASTP~~lI~eVi~~l~~~~ 360 (368)
.+|++.+.|.+++.|-.+|-. |+-. ++..++||.....-. +.++++.+++++
T Consensus 66 ~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~g~a~~--l~~l~~~i~~l~ 119 (120)
T 1xbi_A 66 YLCEEKGIPYAYVASKQDLGK------------------AAGLEVAASSVAIINEGDAEE--LKVLIEKVNVLK 119 (120)
T ss_dssp HHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECSCHHH--HHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEeCCHHHHHH------------------HhCCCCCEEEEEEeccchHHH--HHHHHHHHHHhh
Confidence 789999999888888888743 4422 467899997775433 788888887764
No 67
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.98 E-value=1.8e+02 Score=26.46 Aligned_cols=81 Identities=11% Similarity=0.170 Sum_probs=51.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhh--hcCCEEEEe------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVE--EKVDLILVV------ 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~--~~vD~miVV------ 288 (368)
.+|+++.-...+-.-|..+.+-+++...+. + -++.+.++ ....++|. .+..|.+ +.+|.+|++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARDL-G-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHHc-C-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 479999887665466788888777643332 2 23444432 22334433 4555654 389999998
Q ss_pred ----hhhhccCCCeEEeCCCCC
Q 017615 289 ----EIAEDRGIPSYWIDSEKR 306 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~e 306 (368)
+.+.+.|.|...+.+...
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHTTSCCEEEEEESCCC
T ss_pred HHHHHHHHhCCCcEEEEcCCCC
Confidence 455577899999887544
No 68
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=31.98 E-value=1.2e+02 Score=26.51 Aligned_cols=128 Identities=6% Similarity=-0.019 Sum_probs=68.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe-------h
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------E 289 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------e 289 (368)
..|+++....++..-|..+.+-+.+...+. + .++.++++-- ..++|. .+..|.+..+|.+|+. +
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 83 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQ-N-----YNYNVVICPY--KTDCLHLEKGISKENSFDAAIIANISNYDLE 83 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHT-T-----TCSEEEEEEE--CTTCGGGCGGGSTTTCCSEEEESSCCHHHHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHc-C-----CeEEEEecCC--CchhHHHHHHHHhccCCCEEEEecCCcccHH
Confidence 579999875566677888888887643332 2 2233332211 122232 3344545789999998 1
Q ss_pred h--hhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 017615 290 I--AEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 357 (368)
Q Consensus 290 i--a~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~ 357 (368)
+ ..+.+.|...+.+..+ .-..+..- ...+ ..--++| ..|.++||+..|.+......+..-.+.+
T Consensus 84 ~~~~~~~~iPvV~~~~~~~--~~~~V~~D~~~~~--~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 151 (289)
T 3g85_A 84 YLNKASLTLPIILFNRLSN--KYSSVNVDNYKMG--EKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIE 151 (289)
T ss_dssp HHHHCCCSSCEEEESCCCS--SSEEEEECHHHHH--HHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHhccCCCCEEEECCCCC--CCCEEEeCHHHHH--HHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHH
Confidence 2 2246789999987533 21111000 0111 1111222 2478999999987655554444444433
No 69
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=31.75 E-value=1.1e+02 Score=30.87 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=48.4
Q ss_pred cceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccccCC-
Q 017615 19 EYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKG- 97 (368)
Q Consensus 19 ~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g- 97 (368)
.|+|..++|.+. |.| |.=++ -+|+-+.+. +-.|...- .=-++...+.|++.|+.+...- +.+.+..+
T Consensus 14 ~~~~~~~~i~~i---GiG-g~Gms-~lA~~l~~~--G~~V~~sD-~~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~ 81 (524)
T 3hn7_A 14 NLYFQGMHIHIL---GIC-GTFMG-SLALLARAL--GHTVTGSD-ANIYPPMSTQLEQAGVTIEEGY----LIAHLQPAP 81 (524)
T ss_dssp -----CCEEEEE---TTT-SHHHH-HHHHHHHHT--TCEEEEEE-SCCCTTHHHHHHHTTCEEEESC----CGGGGCSCC
T ss_pred ceeecCCEEEEE---Eec-HhhHH-HHHHHHHhC--CCEEEEEC-CCCCcHHHHHHHHCCCEEECCC----CHHHcCCCC
Confidence 467788888765 333 22221 123323332 23454432 2223556789999999987542 12333322
Q ss_pred CEEEEcCCCCCH--HHHHHHHhcCCcEE
Q 017615 98 DVVVLPAFGAAV--EEMVTLNNKNVQIV 123 (368)
Q Consensus 98 ~~VIIrAHGv~~--~~~~~l~~~g~~ii 123 (368)
| +|+-+=|+|+ ..+++++++|+.|+
T Consensus 82 d-~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 82 D-LVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp S-EEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred C-EEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 5 5555668875 45678888999887
No 70
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=31.54 E-value=1.6e+02 Score=30.08 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=64.0
Q ss_pred ceEEEEeCCCCCcc-----cHHHHHHHHHHHHhh-C---C-CCceEEecc--cccC-HHHHHHHHhcCcEEecCCcc---
Q 017615 24 NVKVKLAESYGFCW-----GVERAVQIAYEARKQ-F---P-EEKIWITNE--IIHN-PTVNKRLEEMAVQNIPVEEG--- 87 (368)
Q Consensus 24 ~mkI~lA~~~GFC~-----GV~RAI~~a~~~~~~-~---~-~~~Vy~lG~--iIHN-~~Vv~~L~~~GV~~v~~~~~--- 87 (368)
+..|+.+..-||-. |-..|++...+.+-. . . ...|=++|+ +-++ .++..-|+++|+.++-...+
T Consensus 165 ~~pVi~v~tpGf~g~s~~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t 244 (533)
T 1mio_A 165 GIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDAT 244 (533)
T ss_dssp SSCEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCC
T ss_pred CCcEEEEeCCCCcCcchhHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 46799999999985 777777666554421 1 1 235888887 3444 45666679999987743322
Q ss_pred ccccccccCCCEEEEcCCCCCHHHHHHHHhc-CCcEEeCcCchh
Q 017615 88 KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (368)
Q Consensus 88 ~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~-g~~iiDaTCP~V 130 (368)
.+++..++.....|.-.|-.....-+.|+++ |...+... |+-
T Consensus 245 ~~ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~-piG 287 (533)
T 1mio_A 245 YEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCN-FIG 287 (533)
T ss_dssp HHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECC-CSS
T ss_pred HHHHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEec-CCC
Confidence 2233444433333333333345556677665 89998874 763
No 71
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=31.52 E-value=73 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=22.0
Q ss_pred EcCCCCCHHHHHHHHhcCCcEEeCcCchhHHH
Q 017615 102 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKV 133 (368)
Q Consensus 102 IrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv 133 (368)
+-+-+...+..+.++++|+.++|--|+-+...
T Consensus 99 ~~~~~~~~~l~~~a~~~Gi~~igpnc~g~~~~ 130 (138)
T 1y81_A 99 FQPGAESEEIRRFLEKAGVEYSFGRCIMVETS 130 (138)
T ss_dssp ECTTSCCHHHHHHHHHHTCEEECSCCHHHHC-
T ss_pred EcCccHHHHHHHHHHHCCCEEEcCCcceEEcc
Confidence 33344577888888888888888888766543
No 72
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=31.02 E-value=2.2e+02 Score=25.30 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=21.1
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEec
Q 017615 57 KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
+.|..----.|+.+.+.|++.|..++.
T Consensus 137 ~~fr~P~G~~~~~~~~~l~~~G~~~v~ 163 (240)
T 1ny1_A 137 LYLRPPRGVFSEYVLKETKRLGYQTVF 163 (240)
T ss_dssp CEECCGGGEECHHHHHHHHHTTCEEBC
T ss_pred cEEeCCCCCCCHHHHHHHHHcCCEEEE
Confidence 355554456799999999999999875
No 73
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=30.75 E-value=3.1e+02 Score=24.96 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=61.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.-. ++..-|.++..-+.+...+. + .++.++++- ...++| +.+..|.+..+|.+|+.
T Consensus 71 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 141 (355)
T 3e3m_A 71 GFVGLLLPS-LNNLHFAQTAQSLTDVLEQG-G-----LQLLLGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHTEQT 141 (355)
T ss_dssp CEEEEEESC-SBCHHHHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCCHHH
T ss_pred CEEEEEeCC-CCchHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCCHHH
Confidence 478888754 44456777877776543322 2 234333322 223344 33445555789999998
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCC
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 344 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGAST 344 (368)
+.+.+.+.|...|.+...-+....+..- ...+ ..--++| ..|.++||+..|.+.
T Consensus 142 ~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~--~~a~~~L~~~G~r~I~~i~~~~~ 198 (355)
T 3e3m_A 142 IRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAA--YDMTNALLARGFRKIVFLGEKDD 198 (355)
T ss_dssp HHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHH--HHHHHHHHHTTCCSEEEEEESSC
T ss_pred HHHHHhCCCCEEEECCccCCCCCCEEEeChHHHH--HHHHHHHHHCCCCeEEEEccCcc
Confidence 4455778999999544322211011000 0011 1111222 247899999998654
No 74
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=30.69 E-value=2.2e+02 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=21.0
Q ss_pred ceEEecccccCHHHHHHHHhcCcEEec
Q 017615 57 KIWITNEIIHNPTVNKRLEEMAVQNIP 83 (368)
Q Consensus 57 ~Vy~lG~iIHN~~Vv~~L~~~GV~~v~ 83 (368)
..|..----.|+.+.+.|++.|..++.
T Consensus 125 ~~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 125 AYMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp SEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred cEEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 355544445799999999999999886
No 75
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=30.65 E-value=2.8e+02 Score=24.37 Aligned_cols=131 Identities=16% Similarity=0.088 Sum_probs=67.3
Q ss_pred ceeEEEEcCCCChHHHH-HHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHH-HHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTTMLKGETE-EIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~eLa~~~vD~miVV------- 288 (368)
..|+++.....+ .-|. ++.+-+.+...+. + .++.++++- ...++|.. +..|.+..+|.+|+.
T Consensus 14 ~~Igvi~~~~~~-~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~ 84 (301)
T 3miz_A 14 NTFGIITDYVST-TPYSVDIVRGIQDWANAN-G-----KTILIANTG--GSSEREVEIWKMFQSHRIDGVLYVTMYRRIV 84 (301)
T ss_dssp CEEEEEESSTTT-CCSCHHHHHHHHHHHHHT-T-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEEEEEEEEEC
T ss_pred CEEEEEeCCCcC-cccHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEecCCccHH
Confidence 579988765432 2244 5555555432222 2 234444432 23344433 444545789999998
Q ss_pred -hhhhccCCCeEEeCCCCCcC-CCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 017615 289 -EIAEDRGIPSYWIDSEKRIG-PGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFEI 359 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~-~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 359 (368)
+.+.+.+.|...+.+..+-. ....+..- ...+.. --++| ..|.++||+..|.....+..+....+.+.+
T Consensus 85 ~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al 157 (301)
T 3miz_A 85 DPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARD--LTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTT 157 (301)
T ss_dssp CCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHH--HHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHH--HHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHH
Confidence 34556788988887543322 10111000 011111 11222 247899999999876665555555554433
No 76
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=30.47 E-value=2.3e+02 Score=23.36 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=16.1
Q ss_pred ccCCCE-EEEcCCCCCHHHHHHH
Q 017615 94 VNKGDV-VVLPAFGAAVEEMVTL 115 (368)
Q Consensus 94 l~~g~~-VIIrAHGv~~~~~~~l 115 (368)
+.++|. ++|+.-|-++++.+.+
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~ 102 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVA 102 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcHHHHHHH
Confidence 345665 5689999999887655
No 77
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=30.20 E-value=1.4e+02 Score=24.00 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=55.0
Q ss_pred HHHHhcCCcceecceEEEEeCCCCCcccHHHHHHHHHHHHhhCCCCceEEeccccc-CHHH-HHHHHhcCcEEecCCccc
Q 017615 11 KKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIH-NPTV-NKRLEEMAVQNIPVEEGK 88 (368)
Q Consensus 11 ~~~~~~~~~~~~g~mkI~lA~~~GFC~GV~RAI~~a~~~~~~~~~~~Vy~lG~iIH-N~~V-v~~L~~~GV~~v~~~~~~ 88 (368)
.++.++..+...|.|.|- .|.- .. ..+..+...|.|-+ ++.. .+.+++.|-.+....
T Consensus 9 ~~~~~~~~p~~~g~~~~p----~~~~-----------~~---l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV--- 67 (109)
T 2k6g_A 9 RSYLNREGPKALGSKEIP----KGAE-----------NC---LEGLIFVITGVLESIERDEAKSLIERYGGKVTGNV--- 67 (109)
T ss_dssp HHHHTCCCCSSTTTSCCC----CCCT-----------TT---TTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC---
T ss_pred HHhhcccCCCCCCcccCC----CCCC-----------CC---CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc---
Confidence 345566777777777652 2210 01 22567888999954 5444 455688899988753
Q ss_pred cccccccCC-CEEEEcCCCCCHHHHHHHHhcCCcEEe
Q 017615 89 KQFDVVNKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 124 (368)
Q Consensus 89 ~~l~el~~g-~~VIIrAHGv~~~~~~~l~~~g~~iiD 124 (368)
... +.||.-. ...+.-+++|++.|+.|||
T Consensus 68 ------SkkTd~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 68 ------SKKTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp ------CTTCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred ------cCCceEEEECC-CCChHHHHHHHHcCCeEEe
Confidence 222 4555543 3456788999999999987
No 78
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=29.97 E-value=1.4e+02 Score=24.65 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=48.9
Q ss_pred CHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCc
Q 017615 67 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 145 (368)
Q Consensus 67 N~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy 145 (368)
+.+.++.|+++|+.++= + +| +-.......++..|+. +++..+|.-.-+....+++.-.-.
T Consensus 40 ~~~~l~~L~~~G~~~~i----------~-Tg--------~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~~ 100 (180)
T 1k1e_A 40 DGLGIKMLMDADIQVAV----------L-SG--------RDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAE 100 (180)
T ss_dssp HHHHHHHHHHTTCEEEE----------E-ES--------CCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHCCCeEEE----------E-eC--------CCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCHH
Confidence 55788999999987552 0 11 1234566667777875 578889988888877777755557
Q ss_pred eEEEEecCC
Q 017615 146 TSIIHGKYS 154 (368)
Q Consensus 146 ~IIIiG~~~ 154 (368)
.++.+||..
T Consensus 101 ~~~~vGD~~ 109 (180)
T 1k1e_A 101 QTAYIGDDS 109 (180)
T ss_dssp GEEEEECSG
T ss_pred HEEEECCCH
Confidence 899999876
No 79
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=29.79 E-value=2.1e+02 Score=25.03 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=22.6
Q ss_pred cccCCCEE-EEcCCCCCHHHHHHH---Hh--cCCcEEeCcCc
Q 017615 93 VVNKGDVV-VLPAFGAAVEEMVTL---NN--KNVQIVDTTCP 128 (368)
Q Consensus 93 el~~g~~V-IIrAHGv~~~~~~~l---~~--~g~~iiDaTCP 128 (368)
.+.++|.| +|+.-|-++++.+.+ ++ +|..+|=-|+.
T Consensus 103 ~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~ 144 (220)
T 3etn_A 103 ILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGN 144 (220)
T ss_dssp GCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 44567764 688889999887544 44 55555544443
No 80
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=29.79 E-value=1.8e+02 Score=23.30 Aligned_cols=73 Identities=5% Similarity=-0.164 Sum_probs=52.7
Q ss_pred HHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCceE
Q 017615 69 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTS 147 (368)
Q Consensus 69 ~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~I 147 (368)
..++.|+++|+.+. |++ -+-.......++..|+. +.+...|.-.-+....+++.-+...+
T Consensus 38 ~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~~~~~gl~~~~~~~kpk~~~~~~~~~~~~~~~~~~ 98 (164)
T 3e8m_A 38 AGIFWAHNKGIPVG------------------ILT-GEKTEIVRRRAEKLKVDYLFQGVVDKLSAAEELCNELGINLEQV 98 (164)
T ss_dssp HHHHHHHHTTCCEE------------------EEC-SSCCHHHHHHHHHTTCSEEECSCSCHHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHCCCEEE------------------EEe-CCChHHHHHHHHHcCCCEeecccCChHHHHHHHHHHcCCCHHHE
Confidence 36888888886543 122 12346677778888886 68888899888888888887777899
Q ss_pred EEEecCCCcceeee
Q 017615 148 IIHGKYSHEETVAT 161 (368)
Q Consensus 148 IIiG~~~HpEv~gi 161 (368)
+.+||.. --+.+.
T Consensus 99 ~~vGD~~-~Di~~~ 111 (164)
T 3e8m_A 99 AYIGDDL-NDAKLL 111 (164)
T ss_dssp EEECCSG-GGHHHH
T ss_pred EEECCCH-HHHHHH
Confidence 9999977 344433
No 81
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=29.70 E-value=25 Score=32.54 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.0
Q ss_pred cceEE-EEeCCCCCcccHHHHHHHHHH
Q 017615 23 GNVKV-KLAESYGFCWGVERAVQIAYE 48 (368)
Q Consensus 23 g~mkI-~lA~~~GFC~GV~RAI~~a~~ 48 (368)
.+|++ +-|.-+|+|.||.+||..+.+
T Consensus 3 ~~~~LIvnADDfGls~~vN~gI~~~~~ 29 (263)
T 2i5i_A 3 SNKKLIINADDFGYTPAVTQGIIEAHK 29 (263)
T ss_dssp CCCEEEEEEEEETSSHHHHHHHHHHHH
T ss_pred CccEEEEEcccCCCChhHHHHHHHHHH
Confidence 35675 459999999999999987754
No 82
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=29.64 E-value=84 Score=25.22 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=49.1
Q ss_pred CCEEEEcCCCCCHHHHHHHHhcCCcE--EeCcCchhHHHHHHHHHHhhCCceEEEEecCCCcceeeecccC-CcEEEEcC
Q 017615 97 GDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVKN 173 (368)
Q Consensus 97 g~~VIIrAHGv~~~~~~~l~~~g~~i--iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~gi~g~a-~~~~vv~~ 173 (368)
+.++|+-+=-+...+.+.|.+.|..| +|.. ...++++.+.|+.+ ++|+...+++.--.+.. .+.+|+..
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVRA-VLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCEE-EESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCCE-EECCCCCHHHHHhcCcccCCEEEEEC
Confidence 55778877556889999999998776 6764 34455566788874 88999999875333322 24566554
Q ss_pred hhhH
Q 017615 174 MKEA 177 (368)
Q Consensus 174 ~~e~ 177 (368)
+.+.
T Consensus 80 ~~~~ 83 (140)
T 3fwz_A 80 PNGY 83 (140)
T ss_dssp SCHH
T ss_pred CChH
Confidence 4443
No 83
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=29.14 E-value=70 Score=29.91 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcE------EeCc--CchhHHHHHHHHH
Q 017615 68 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI------VDTT--CPWVSKVWTSVEK 139 (368)
Q Consensus 68 ~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~i------iDaT--CP~V~kv~~~v~~ 139 (368)
..|++.|+++|+-|+|+-. ...+ + ..+.+++.|+.. +|.. =..+.+-.+++.+
T Consensus 145 ~~vm~~L~~~gL~FlDS~T--------s~~S--------~---a~~~A~~~gvp~~~rdvFLD~~~~~~~I~~qL~~a~~ 205 (261)
T 2qv5_A 145 EPVMRDIGKRGLLFLDDGS--------SAQS--------L---SGGIAKAISAPQGFADVLLDGEVTEASILRKLDDLER 205 (261)
T ss_dssp HHHHHHHHHTTCEEEECSC--------CTTC--------C---HHHHHHHHTCCEEECSEETTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEcCCC--------Cccc--------H---HHHHHHHcCCCeEEeeeecCCCCCHHHHHHHHHHHHH
Confidence 3567779999999998521 1111 1 233345555544 3432 1223333333444
Q ss_pred Hhh-CCceEEEEecCCCcceeee
Q 017615 140 HKK-GDYTSIIHGKYSHEETVAT 161 (368)
Q Consensus 140 ~~~-~Gy~IIIiG~~~HpEv~gi 161 (368)
+++ +| ..|.||++ ||+++..
T Consensus 206 ~Ar~~G-~AIaIGhp-~p~Ti~a 226 (261)
T 2qv5_A 206 IARRNG-QAIGVASA-FDESIAA 226 (261)
T ss_dssp HHHHHS-EEEEEEEC-CHHHHHH
T ss_pred HHHhcC-cEEEEeCC-CHHHHHH
Confidence 444 56 67789987 8886544
No 84
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=28.87 E-value=63 Score=30.12 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=40.5
Q ss_pred cCCCEEE-EcCCCCCHHHHHHHHhcC--CcE-EeCcCchhHHHHHHHHHHhhCCceEEEEecC
Q 017615 95 NKGDVVV-LPAFGAAVEEMVTLNNKN--VQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKY 153 (368)
Q Consensus 95 ~~g~~VI-IrAHGv~~~~~~~l~~~g--~~i-iDaTCP~V~kv~~~v~~~~~~Gy~IIIiG~~ 153 (368)
++|++|+ +-.-|+...+...+.++| ++| ++=|-|+-.- +..+.+|.+.|..+.++++.
T Consensus 108 ~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~ds 169 (276)
T 1vb5_A 108 DDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDA 169 (276)
T ss_dssp CTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGG
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHH
Confidence 3566554 333334455566665534 444 7789999876 88999999999999999964
No 85
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=27.55 E-value=1.1e+02 Score=25.00 Aligned_cols=54 Identities=20% Similarity=0.424 Sum_probs=39.8
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcccccC--CCcEEEEeecCCCcHHHHHHHHHHHHhhhh
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGASTPDKAVEDVLKKVFEIKR 361 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~~l~~--~~~~VGITAGASTP~~lI~eVi~~l~~~~~ 361 (368)
.+|++.+.|.+++.|-.+|-. |+-. ++..++||.+... +.+++++.+.++++..
T Consensus 65 ~lc~~~~Vp~~~v~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~l~~ 120 (124)
T 2fc3_A 65 LLCDEKKIPYVYVPSKKRLGE------------------AAGIEVAAASVAIIEPGDA-ETLVREIVEKVKELRA 120 (124)
T ss_dssp HHHHHTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECCHHHHHH------------------HhCCCCCEEEEEEECcchH-HHHHHHHHHHHHHhHh
Confidence 789999999888888888743 4421 4678999976533 6788888888877654
No 86
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.09 E-value=2.6e+02 Score=24.48 Aligned_cols=117 Identities=12% Similarity=0.015 Sum_probs=61.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccc-cCcccHHHHHHH-HHHHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV------- 288 (368)
++++++....-+ .-|..+.+-+++...+. + -++.+ .++- ...++| +.+..|.+..+|.+|+.
T Consensus 5 ~~I~~i~~~~~~-~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGM-DYWKRCLKGFEDAAQAL-N-----VTVEYRGAAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTS-THHHHHHHHHHHHHHHH-T-----CEEEEEECSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHHc-C-----CEEEEeCCCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 578888876543 45777777776643332 2 23333 2221 223333 33455555789999998
Q ss_pred ----hhhhccCCCeEEeCCCCCcCC-CCcchhh-hccchh-h-hhcccccCCCcEEEEeecCCC
Q 017615 289 ----EIAEDRGIPSYWIDSEKRIGP-GNKIAYK-LMHGEL-V-EKENWLPKGQITIGITSGAST 344 (368)
Q Consensus 289 ----eia~~~~~~t~~Ie~~~eL~~-~~~~~~~-~~~~~~-~-~~~~~l~~~~~~VGITAGAST 344 (368)
+.+.+.+.|...+.+..+-.. ...+..- ...+.. . .-.+.+ .|.++||+..|...
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 76 TDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL-DGEGEVAVITLPNQ 138 (305)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT-TTCEEEEEEECTTC
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 334567899999987543211 0111000 011111 0 001122 37899999998654
No 87
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.67 E-value=3.2e+02 Score=23.80 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=54.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccccccccccccc-CcccHHHHHHH-HHHHHhhhhcCCEEEEe-------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICDATQERQ-DAMYKMVEEKVDLILVV------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-nTIC~AT~~RQ-~a~~eLa~~~vD~miVV------- 288 (368)
..|+++.-. ++..-|..+.+-+.+...+. + .++.+. ++ ....++| +.++.|.+..+|.+|+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 79 (290)
T 3clk_A 9 NVIAAVVSS-VRTNFAQQILDGIQEEAHKN-G-----YNLIIVYSG--SADPEEQKHALLTAIERPVMGILLLSIALTDD 79 (290)
T ss_dssp CEEEEECCC-CSSSHHHHHHHHHHHHHHTT-T-----CEEEEEC------------CHHHHHHSSCCSEEEEESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHHc-C-----CeEEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEecccCCHH
Confidence 578988753 34455777777776543221 2 223322 22 1122333 24555655789999988
Q ss_pred --hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCC
Q 017615 289 --EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAS 343 (368)
Q Consensus 289 --eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGAS 343 (368)
+.+++.+.|...+.+..+-. ...+..- ...+ ..--+|| ..|.++||+..|.+
T Consensus 80 ~~~~l~~~~iPvV~~~~~~~~~-~~~V~~D~~~~g--~~a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 80 NLQLLQSSDVPYCFLSMGFDDD-RPFISSDDEDIG--YQATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp CHHHHHCC--CEEEESCC--CC-SCEEECCHHHHH--HHHHHHHHTTTCCSEEEESCCC
T ss_pred HHHHHHhCCCCEEEEcCCCCCC-CCEEEeChHHHH--HHHHHHHHHcCCCEEEEEeCCC
Confidence 34456788998887643210 0011000 0011 1111233 23789999998864
No 88
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=26.08 E-value=2.3e+02 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=21.3
Q ss_pred ccCCCEE-EEcCCCCCHHHHHHH---HhcCCcEEeCcC
Q 017615 94 VNKGDVV-VLPAFGAAVEEMVTL---NNKNVQIVDTTC 127 (368)
Q Consensus 94 l~~g~~V-IIrAHGv~~~~~~~l---~~~g~~iiDaTC 127 (368)
+.++|.| +|+.-|-++++.+.+ +++|..+|=-|+
T Consensus 108 ~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 108 GNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567764 588889999887655 344444443333
No 89
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=25.97 E-value=3.2e+02 Score=23.59 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=67.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.... +..-|..+.+-+++...+. + -++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 16 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTYI-SDYIFPSIIRGIESYLSEQ-G-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESCS-SSTTHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCCC-CchHHHHHHHHHHHHHHHC-C-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 5799887653 4445777777777643332 2 23444432 22334443 3444555789999996
Q ss_pred ------hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 017615 289 ------EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 357 (368)
Q Consensus 289 ------eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~ 357 (368)
+.+++.+.|...+.+..+-..-..+.-- ...+ ..--++| ..|.++||+..|... .+..+....+.+
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~a~~~L~~~G~~~i~~i~~~~~-~~~~~R~~gf~~ 160 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGG--MMAAEHLLSLGHTHMMGIFKADD-TQGVKRMNGFIQ 160 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHH--HHHHHHHHHTTCCSEEEEEESSS-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHH--HHHHHHHHHCCCCcEEEEcCCCC-ccHHHHHHHHHH
Confidence 2244678999999865332110011000 0111 1111222 237889999888665 344444433333
No 90
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=25.70 E-value=3.3e+02 Score=23.67 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=65.4
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++... ++..-|..+.+-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (285)
T 3c3k_A 9 GMLLVMVSN-IANPFCAAVVKGIEKTAEKN-G-----YRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSELPE 79 (285)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHH
T ss_pred CEEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHH
Confidence 579998865 34456777777776543322 2 23433332 22233443 3455555689999997
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 356 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l 356 (368)
+.++ .+.|...+.+..+-.....+..- ...+. .--++| ..|.++||+..|.....+..+..-.+.
T Consensus 80 ~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~--~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~ 147 (285)
T 3c3k_A 80 LQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASE--YVVDQLVKSGKKRIALINHDLAYQYAQHRESGYL 147 (285)
T ss_dssp HHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHH--HHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHH
T ss_pred HHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHH--HHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHH
Confidence 2234 68899988764321110011000 00111 111222 237899999998765444444443333
No 91
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=25.38 E-value=3.4e+02 Score=23.71 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=60.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
..|+++... ++..-|..+.+-+.+...+. + .++.++++ ....++| +.++.|.+..+|.+|+.
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 87 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIATMY-K-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEH 87 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHH
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHH
Confidence 579998864 34456777777776543322 2 23433332 1222333 34555555789999997
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCC
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAS 343 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGAS 343 (368)
+.+.+.+.|...+.+..+-.....+..- ...+ ..--++| ..|.++||+..|..
T Consensus 88 ~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 88 VAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAI--YDAVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp HHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHH--HHHHHHHHHTTCSSEEEEESCT
T ss_pred HHHHHhcCCCEEEEccccCCCCCCEEEECcHHHH--HHHHHHHHHCCCCeEEEEeCCc
Confidence 3344678899999775321110111000 0011 1111222 13789999998875
No 92
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.67 E-value=3.4e+02 Score=23.46 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=70.7
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.... +..-|..+..-+++...+. + -++.++++- ...++| +.+..|.+..+|.+|+.
T Consensus 9 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 79 (293)
T 3l6u_A 9 NIVGFTIVND-KHEFAQRLINAFKAEAKAN-K-----YEALVATSQ--NSRISEREQILEFVHLKVDAIFITTLDDVYIG 79 (293)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHHT-T-----CEEEEEECS--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH
T ss_pred cEEEEEEecC-CcHHHHHHHHHHHHHHHHc-C-----CEEEEECCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH
Confidence 5799988653 4556777777776543322 2 234444432 223444 34555655789999998
Q ss_pred ---hhhhccCCCeEEeCCCCCcCCCCcchhhh-ccchh-hhhcccccC---CCc-----EEEEeecCCCcHHHHHHHHHH
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWLPK---GQI-----TIGITSGASTPDKAVEDVLKK 355 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~~~~~~~~~-~~~~~-~~~~~~l~~---~~~-----~VGITAGASTP~~lI~eVi~~ 355 (368)
+.+.+.+.|...+.+..+-.+ .+.+-. -+.+. ..--++|-+ |.+ +||+..|...-.+..+..-.+
T Consensus 80 ~~~~~~~~~~iPvV~~~~~~~~~~--~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf 157 (293)
T 3l6u_A 80 SAIEEAKKAGIPVFAIDRMIRSDA--VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGF 157 (293)
T ss_dssp HHHHHHHHTTCCEEEESSCCCCTT--CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecCCCCCCc--ceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHH
Confidence 334567899999976544211 011110 00000 111122322 445 999999876555555555444
Q ss_pred HHhh
Q 017615 356 VFEI 359 (368)
Q Consensus 356 l~~~ 359 (368)
...+
T Consensus 158 ~~~l 161 (293)
T 3l6u_A 158 LKGI 161 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 93
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=24.67 E-value=3.8e+02 Score=24.17 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=36.3
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhccc-ccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV 288 (368)
.|||++ |-. ....+.++.+-+++.+.+. |. +.++-++.+.|.==......| -+++|.++++|++|.+
T Consensus 9 ~~igi~-q~~-~hp~ld~~~~G~~~~L~~~-G~~~g~nv~~~~~~a~gd~~~~~~-~~~~l~~~~~DlIiai 76 (302)
T 3lkv_A 9 AKVAVS-QIV-EHPALDATRQGLLDGLKAK-GYEEGKNLEFDYKTAQGNPAIAVQ-IARQFVGENPDVLVGI 76 (302)
T ss_dssp EEEEEE-ESC-CCHHHHHHHHHHHHHHHHT-TCCBTTTEEEEEEECTTCHHHHHH-HHHHHHTTCCSEEEEE
T ss_pred ceEEEE-Eee-cChhHHHHHHHHHHHHHhh-CcccCCcEEEEEEeCCCCHHHHHH-HHHHHHhcCCcEEEEc
Confidence 589966 764 4445666666666555443 32 212223334443322233333 3456766889999988
No 94
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=24.56 E-value=3.4e+02 Score=23.40 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=65.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
+.|+++... ++-.-|.++.+.+.+...+. + .++.+.++ ....++| +.+..|.+..+|.+|+.
T Consensus 2 ~~Igvi~~~-~~~~f~~~~~~gi~~~~~~~-g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 2 DTIALVVST-LNNPFFVSLKDGAQKEADKL-G-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHHH-T-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred cEEEEEecC-CCCHHHHHHHHHHHHHHHHc-C-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 368887754 44456777877776543332 2 22333322 1222333 34555655689999987
Q ss_pred ---hhhhccCCCeEEeCCCCCcCC-CCcchhh-hccchhhhhcccccC---CCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIGP-GNKIAYK-LMHGELVEKENWLPK---GQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~~-~~~~~~~-~~~~~~~~~~~~l~~---~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
+.+++.+.|...+.+..+-.. ...+.-- ...+ ..--+||-+ +.++|++.+|...-....+..-.+.+.
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~a 148 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGG--KIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQA 148 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCSSSCCSEEEEECHHHHH--HHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCCCCceeEEEecChHHHH--HHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHH
Confidence 224457899999987533211 0011000 0000 111122211 468999998865444444444444433
No 95
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=24.25 E-value=2.1e+02 Score=24.90 Aligned_cols=67 Identities=7% Similarity=-0.105 Sum_probs=49.9
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
.++.|+++|+.+.= + .+ .-...+...+++.|+. +++...|...-+....+++.-....++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~--------~~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TG--------RRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eC--------CCHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 78899999986541 1 11 1244567777788885 688888888888888888877788999
Q ss_pred EEecCCC
Q 017615 149 IHGKYSH 155 (368)
Q Consensus 149 IiG~~~H 155 (368)
.+||..+
T Consensus 145 ~vGDs~n 151 (211)
T 3ij5_A 145 YIGDDLI 151 (211)
T ss_dssp EEECSGG
T ss_pred EEcCCHH
Confidence 9999765
No 96
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=23.90 E-value=3.3e+02 Score=23.07 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCcE-EeCcCchhHHHHHHHHHHhhCCceEEEE
Q 017615 109 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 150 (368)
Q Consensus 109 ~~~~~~l~~~g~~i-iDaTCP~V~kv~~~v~~~~~~Gy~IIIi 150 (368)
.+..+.+++.|+.+ +|..+|. ..-..++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVD--DLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCS--SHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHcCCCEEEE
Confidence 56677888889886 5755553 2234456666666666554
No 97
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=23.88 E-value=3.8e+02 Score=24.64 Aligned_cols=91 Identities=10% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHHH-------
Q 017615 45 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN------- 116 (368)
Q Consensus 45 ~a~~~~~~~~~~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~~~~~l~------- 116 (368)
+|...++. +-+|+.+. .|+...+.|.+.|+.+..+ ++++ ..-|.||+ +=..+..+...+.
T Consensus 46 ~a~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aDvVi~-~vp~~~~~~~v~~~~~~~~~ 113 (320)
T 4dll_A 46 MARRLCEA--GYALQVWN---RTPARAASLAALGATIHEQ------ARAAARDADIVVS-MLENGAVVQDVLFAQGVAAA 113 (320)
T ss_dssp HHHHHHHT--TCEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCSEEEE-CCSSHHHHHHHHTTTCHHHH
T ss_pred HHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCCEEEE-ECCCHHHHHHHHcchhHHhh
Confidence 44444443 23577664 5888999999999988764 2333 33454444 4333334443332
Q ss_pred -hcCCcEEeCcCchhHHHHHHHHHHhhCCceE
Q 017615 117 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 147 (368)
Q Consensus 117 -~~g~~iiDaTCP~V~kv~~~v~~~~~~Gy~I 147 (368)
..|..|||.+=-.........+.+.+.|...
T Consensus 114 l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 114 MKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 4688899988766677777777777777553
No 98
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=23.85 E-value=2.5e+02 Score=23.65 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=48.6
Q ss_pred CceEEecccccCHHHHHHHHhc--CcEEecCCccccc-cccccC------CCEEEEcCCCCCHHHHHHHHhcCCcEEeCc
Q 017615 56 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 126 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~--GV~~v~~~~~~~~-l~el~~------g~~VIIrAHGv~~~~~~~l~~~g~~iiDaT 126 (368)
..|+.+|+++. +.+++.|++. .+..|..+-+... +..+|. +..-|+=.||-++..
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~~~--------------- 115 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPW--------------- 115 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCCHH---------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCCCC---------------
Confidence 46999999987 5788999887 4666754422111 223332 122355578754210
Q ss_pred CchhHHHHHHHHHHhhCCceEEEEecCCCccee
Q 017615 127 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 159 (368)
Q Consensus 127 CP~V~kv~~~v~~~~~~Gy~IIIiG~~~HpEv~ 159 (368)
.....+.+..+.+..++++|+--.|.+.
T Consensus 116 -----~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 116 -----DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp -----HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred -----CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 0111222222378999999987777654
No 99
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=23.65 E-value=4.2e+02 Score=24.09 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=64.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++... ++..-|.++.+-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 67 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 137 (348)
T 3bil_A 67 NTIGVIVPS-LINHYFAAMVTEIQSTASKA-G-----LATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEECANQ 137 (348)
T ss_dssp -CEEEEESC-SSSHHHHHHHHHHHHHHHHT-T-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHH
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHH
Confidence 478888754 34456777777776543322 2 23333322 22233443 3555555689999988
Q ss_pred -hhhhccCCCeEEeCCCCCc-CCCCcchhhhccchh-hhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 017615 289 -EIAEDRGIPSYWIDSEKRI-GPGNKIAYKLMHGEL-VEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 356 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL-~~~~~~~~~~~~~~~-~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l 356 (368)
+.+.+.+.|...+.+..+- .....+. .-+.+. ..--++| ..|.++||+.+|.....+..+....+.
T Consensus 138 ~~~l~~~~iPvV~i~~~~~~~~~~~~V~--~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 207 (348)
T 3bil_A 138 LEDLQKQGMPVVLVDRELPGDSTIPTAT--SNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFK 207 (348)
T ss_dssp HHHHHHC-CCEEEESSCCSCC-CCCEEE--EECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEcccCCCCCCCCEEE--eChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 3344578899999774321 1100010 000000 1111222 237899999988754444444443333
No 100
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Probab=23.64 E-value=3.9e+02 Score=24.44 Aligned_cols=94 Identities=12% Similarity=-0.055 Sum_probs=54.2
Q ss_pred CCcccHHHHHHHHHHHHhhCCC-CceEEeccc----------ccCHH----HHHHHHhcCcEEecCCccccccccc-cCC
Q 017615 34 GFCWGVERAVQIAYEARKQFPE-EKIWITNEI----------IHNPT----VNKRLEEMAVQNIPVEEGKKQFDVV-NKG 97 (368)
Q Consensus 34 GFC~GV~RAI~~a~~~~~~~~~-~~Vy~lG~i----------IHN~~----Vv~~L~~~GV~~v~~~~~~~~l~el-~~g 97 (368)
+++.+.+.+.+.+.+.++.... -++|..|.+ --.+. +++...+.|+.+.-...+...+... ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~G~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~~~g 240 (403)
T 3gnh_A 161 FNSDSPDEARKAVRTLKKYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAVRAG 240 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEeecCCcCCCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC
Confidence 4567888888888887764321 145655442 33443 4455567798876543221111111 124
Q ss_pred CEEEEcCCCCCHHHHHHHHhcCCcEEeCcCch
Q 017615 98 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 129 (368)
Q Consensus 98 ~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~ 129 (368)
-..|.=...++++..+.++++|+.++ +||+
T Consensus 241 ~~~i~H~~~~~~~~~~~~~~~g~~~~--~~~~ 270 (403)
T 3gnh_A 241 VDTIEHASLVDDEGIKLAVQKGAYFS--MDIY 270 (403)
T ss_dssp CSEEEECTTCCHHHHHHHHHHTCEEE--CCCS
T ss_pred CCEEecCCcCCHHHHHHHHHCCCEEE--eeec
Confidence 33444333359999999999999886 4443
No 101
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=23.55 E-value=3.6e+02 Score=23.27 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=64.0
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.... +..-|..+.+.+.+...+. + -++.++++- ...++|. .++.|.+..+|.+|+.
T Consensus 8 ~~Igvi~~~~-~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 78 (276)
T 3jy6_A 8 KLIAVIVANI-DDYFSTELFKGISSILESR-G-----YIGVLFDAN--ADIEREKTLLRAIGSRGFDGLILQSFSNPQTV 78 (276)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHTT-T-----CEEEEEECT--TCHHHHHHHHHHHHTTTCSEEEEESSCCHHHH
T ss_pred cEEEEEeCCC-CchHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CCHHHHHHHHHHHHhCCCCEEEEecCCcHHHH
Confidence 5799988654 5556778888777643322 2 234443322 2233333 4445555789999998
Q ss_pred hhhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCC
Q 017615 289 EIAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGAST 344 (368)
Q Consensus 289 eia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGAST 344 (368)
+.+++.+.|...+.+..+-.....+..- ...+. .--++| ..|.++||+.+|...
T Consensus 79 ~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~--~a~~~L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 79 QEILHQQMPVVSVDREMDACPWPQVVTDNFEAAK--AATTAFRQQGYQHVVVLTSELE 134 (276)
T ss_dssp HHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHH--HHHHHHHTTTCCEEEEEEECST
T ss_pred HHHHHCCCCEEEEecccCCCCCCEEEEChHHHHH--HHHHHHHHcCCCeEEEEecCCC
Confidence 4455678999999875432111111000 00111 111222 247899999999765
No 102
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=23.54 E-value=2.5e+02 Score=26.82 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=62.8
Q ss_pred ceeEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV-------- 288 (368)
.+|+++.-.+..- .-++...+-+++ +.+.++.. -++.+.++ .....+.++.++.|+++.+|++|..
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~-~~~~~G~~---~~~~~~e~-~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~ 101 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKE-LVEALGDK---VETTFLEN-VAEGADAERSIKRIARAGNKLIFTTSFGYMDPT 101 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHH-HHHHHTTT---EEEEEECS-CCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHH-HHHHhCCc---eEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
Confidence 4899998544432 334445454443 33333310 12222222 1223567889999988789988887
Q ss_pred -hhhhcc-CCCeEEeCCCCCcCCCCcchhhhccchhh----hhcccccCCCcEEEEeecCCCcH
Q 017615 289 -EIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHGELV----EKENWLPKGQITIGITSGASTPD 346 (368)
Q Consensus 289 -eia~~~-~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~----~~~~~l~~~~~~VGITAGASTP~ 346 (368)
+++++. ..+-.+|++..+ ..+...+.....|.- .-...+ .+.++||..+|--.|.
T Consensus 102 ~~vA~~~Pdv~fv~id~~~~--~~Nv~sv~~~~~eg~ylaG~~A~~~-tk~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 102 VKVAKKFPDVKFEHATGYKT--ADNMSAYNARFYEGRYVQGVIAAKM-SKKGIAGYIGSVPVPE 162 (356)
T ss_dssp HHHHTTCTTSEEEEESCCCC--BTTEEEEEECHHHHHHHHHHHHHHH-CSSCEEEEEECCCCHH
T ss_pred HHHHHHCCCCEEEEEecccc--CCcEEEEEechhHHHHHHHHHHHHh-cCCCEEEEECCCccHH
Confidence 666654 234455655432 223322222222220 000122 2468999999987665
No 103
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=23.42 E-value=2.7e+02 Score=23.23 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=46.5
Q ss_pred HHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCceEE
Q 017615 70 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 70 Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~II 148 (368)
.++.|+++|+.+.= + .| +-.......++..|+. +.|...|.-.-+....+++.-....++
T Consensus 54 ~l~~L~~~g~~~~i----------~-T~--------~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTAI----------I-SG--------RKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-EC--------cChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 78899999886541 0 11 2345677778888885 577666666666666777766678899
Q ss_pred EEecCCC
Q 017615 149 IHGKYSH 155 (368)
Q Consensus 149 IiG~~~H 155 (368)
.+||..+
T Consensus 115 ~vGD~~n 121 (189)
T 3mn1_A 115 YLGDDLP 121 (189)
T ss_dssp EEECSGG
T ss_pred EECCCHH
Confidence 9998853
No 104
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.25 E-value=4e+02 Score=23.78 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=59.2
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.... +..-|..+.+-+.+...+. + .++.++++ ....++|. .+..|.+..+|.+|+.
T Consensus 61 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~-g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~ 131 (332)
T 2hsg_A 61 TTVGVIIPDI-SNIFYAELARGIEDIATMY-K-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEH 131 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHHH-T-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHH
T ss_pred CEEEEEeCCC-CCcHHHHHHHHHHHHHHHc-C-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHH
Confidence 5799887543 3345667777776543322 2 23433332 22234443 4555555689999998
Q ss_pred -hhhhccCCCeEEeCCCCCcCCCCcchhhhccchh-hhhcccc-cCCCcEEEEeecCC
Q 017615 289 -EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL-VEKENWL-PKGQITIGITSGAS 343 (368)
Q Consensus 289 -eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~-~~~~~~l-~~~~~~VGITAGAS 343 (368)
+.+.+.+.|...+.+..+-.....+. .-+.+. ..--++| ..|.++||+-+|..
T Consensus 132 ~~~l~~~~iPvV~~~~~~~~~~~~~V~--~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 132 VEELKKSPVPVVLAASIESTNQIPSVT--IDYEQAAFDAVQSLIDSGHKNIAFVSGTL 187 (332)
T ss_dssp HHHHTTSSSCEEEESCCCSCTTSCEEE--ECHHHHHHHHHHHHHTTTCSCEEEEESCT
T ss_pred HHHHHhCCCCEEEEccccCCCCCCEEE--EChHHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33445678999887753211100110 000011 1111222 24789999999875
No 105
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=22.98 E-value=3.2e+02 Score=25.50 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHhhhhcCCEEEEe-----hhhhccCCCeEEeCCCCCcCCCCcchhhhccchhhhhcc--cccCCCcEEEEeecCCC
Q 017615 272 DAMYKMVEEKVDLILVV-----EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKEN--WLPKGQITIGITSGAST 344 (368)
Q Consensus 272 ~a~~eLa~~~vD~miVV-----eia~~~~~~t~~Ie~~~eL~~~~~~~~~~~~~~~~~~~~--~l~~~~~~VGITAGAST 344 (368)
+++..|..+++|+++.- ...++-..+..-|.+....+..-.+- ...+.. -+ .-..-.|+.+=+.|
T Consensus 176 ~a~~aL~~G~VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvP-------t~~E~G~~~~-~~~~w~gl~ap~g~ 247 (312)
T 2f5x_A 176 PAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLP-------TMDESGYKGF-EVGIWHGMWAPKGT 247 (312)
T ss_dssp HHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSC-------BTTTTTCTTC-CCEEEEEEEEETTC
T ss_pred HHHHHHHcCCccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCC-------CHhhcCCCCe-eEEEEEEEEEcCCC
Confidence 66777777999999987 33333224555555443322100000 000000 01 01234688999999
Q ss_pred cHHHHHHHHHHHHhhh
Q 017615 345 PDKAVEDVLKKVFEIK 360 (368)
Q Consensus 345 P~~lI~eVi~~l~~~~ 360 (368)
|+.+++.+.+.|.++.
T Consensus 248 p~~vv~~l~~al~~~~ 263 (312)
T 2f5x_A 248 PKPVVDKLVKSLQAGL 263 (312)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998763
No 106
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=22.50 E-value=3.7e+02 Score=23.07 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=67.8
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHH-HHHHhhhhcCCEEEEe-------h
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVV-------E 289 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~eLa~~~vD~miVV-------e 289 (368)
..|+++... ++..-|..+.+-+.+...+. + .++.++++- ...++|. .+..|.+..+|.+|+. +
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~~-g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~~dgiIi~~~~~~~~~ 79 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALAH-G-----YQVLIGNSD--NDIKKAQGYLATFVSHNCTGMISTAFNENIIE 79 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHHT-T-----CCEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECGGGHHHHH
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHHC-C-----CEEEEEeCC--CCHHHHHHHHHHHHhCCCCEEEEecCChHHHH
Confidence 578888765 45566778888777643332 2 234333321 1234443 3444545789999998 5
Q ss_pred -hhhccCCCeEEeCCCCCcCCCCcchhh-hccchhhhhcccc-cCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 017615 290 -IAEDRGIPSYWIDSEKRIGPGNKIAYK-LMHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVFE 358 (368)
Q Consensus 290 -ia~~~~~~t~~Ie~~~eL~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~VGITAGASTP~~lI~eVi~~l~~ 358 (368)
.+++.+.|...+.+..+-.. .+..- ...+.. --++| ..|.++||+..|...-.+..+....+...
T Consensus 80 ~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 147 (277)
T 3e61_A 80 NTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQL--QAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYI 147 (277)
T ss_dssp HHHHHC-CCEEEGGGCC-----------HHHHHHH--HHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEeccCCCCC--eEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHH
Confidence 66678899999977643211 11100 011111 11222 23789999999876555554444444443
No 107
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=22.33 E-value=4e+02 Score=23.43 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=46.6
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe------hhh
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV------EIA 291 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV------eia 291 (368)
..||++ |. ++-.-|.++++-+++.+.+. +.+...-.+.+.|+-.....+ +..++.|.++++|++|++ .+.
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~~~~~~~~ 78 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYKDDQVKIDFMNSEGDQSKV-ATMSKQLVANGNDLVVGIATPAAQGLA 78 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCCGGGEEEEEEECTTCHHHH-HHHHHHHTTSSCSEEEEESHHHHHHHH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCCCCceEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEECCcHHHHHHH
Confidence 479998 64 56666888888887654433 210000012223444333333 234566666789999988 111
Q ss_pred -hccCCCeEEeCC
Q 017615 292 -EDRGIPSYWIDS 303 (368)
Q Consensus 292 -~~~~~~t~~Ie~ 303 (368)
...+.|..++..
T Consensus 79 ~~~~~iPvV~~~~ 91 (295)
T 3lft_A 79 SATKDLPVIMAAI 91 (295)
T ss_dssp HHCSSSCEEEESC
T ss_pred HcCCCCCEEEEec
Confidence 135688888864
No 108
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=22.24 E-value=4.2e+02 Score=23.62 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~vD~miVV-------- 288 (368)
..|+++.-+ +..-|..+.+-+.+... .. .+-++.++++ ....++| +.+..|.+..+|.+|+.
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~-~~----~g~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 77 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAM-FY----NGVSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMT 77 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHT-TS----SSCEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHH-Hc----CCcEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH
Confidence 478988765 55556667776665322 11 0223433332 2222333 34556655789999997
Q ss_pred ---hhhhccCCCeEEeCCCCCcC-CCCcchhh-hccchhhhhccccc---CCCcEEEEeecCCCcHHHHHHHHHH
Q 017615 289 ---EIAEDRGIPSYWIDSEKRIG-PGNKIAYK-LMHGELVEKENWLP---KGQITIGITSGASTPDKAVEDVLKK 355 (368)
Q Consensus 289 ---eia~~~~~~t~~Ie~~~eL~-~~~~~~~~-~~~~~~~~~~~~l~---~~~~~VGITAGASTP~~lI~eVi~~ 355 (368)
+.+.+.+.|...+.+..+-. ....+..- ...+ ..--+||- .|.++||+..|...-.+..+..-.+
T Consensus 78 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 78 PIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIG--RSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHH--HHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHH--HHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 22445688999887643211 10011000 0011 11113332 2789999998865433433333333
No 109
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=21.96 E-value=2.2e+02 Score=25.57 Aligned_cols=83 Identities=8% Similarity=-0.034 Sum_probs=52.5
Q ss_pred CceEEecccccCHHHHHHHHhcCcEEecCCccccccccc-cCCCEEEEcCCCCCHHHHHHH------H---hcCCcEEeC
Q 017615 56 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------N---NKNVQIVDT 125 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el-~~g~~VIIrAHGv~~~~~~~l------~---~~g~~iiDa 125 (368)
-+|+.+. .|+...+.|.+.|+.+..+ +.++ ..-|.| |-+=..++.+.+.+ . ..|..|||.
T Consensus 25 ~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~advv-i~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~ 94 (287)
T 3pdu_A 25 FDVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACDIT-IAMLADPAAAREVCFGANGVLEGIGGGRGYIDM 94 (287)
T ss_dssp CCEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCSEE-EECCSSHHHHHHHHHSTTCGGGTCCTTCEEEEC
T ss_pred CeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCCEE-EEEcCCHHHHHHHHcCchhhhhcccCCCEEEEC
Confidence 3577764 5888899999999988764 2333 234544 44434344444443 1 357788998
Q ss_pred cCchhHHHHHHHHHHhhCCceEE
Q 017615 126 TCPWVSKVWTSVEKHKKGDYTSI 148 (368)
Q Consensus 126 TCP~V~kv~~~v~~~~~~Gy~II 148 (368)
+--.........+.+.+.|...+
T Consensus 95 st~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pdu_A 95 STVDDETSTAIGAAVTARGGRFL 117 (287)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 87767666667676777776543
No 110
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.62 E-value=4.3e+02 Score=23.55 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=46.5
Q ss_pred ceeEEEEcCCCChHHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHH-HHHHHhhhhc--CCEEEEe------
Q 017615 218 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK--VDLILVV------ 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~eLa~~~--vD~miVV------ 288 (368)
..|+++... ++..-|..+.+-+.+...+. + -++.++++ ....++| +.++.|.+.. +|.+|+.
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~-g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~ 76 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKSV-G-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDSAD 76 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHHH-T-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHH
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHHc-C-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHH
Confidence 579998865 44456777777776543322 2 23443332 2223344 3455565567 9999998
Q ss_pred -----hhhhccCCCeEEeCCC
Q 017615 289 -----EIAEDRGIPSYWIDSE 304 (368)
Q Consensus 289 -----eia~~~~~~t~~Ie~~ 304 (368)
+.+.+.+.|...+.+.
T Consensus 77 ~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 77 ARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHCCCeEEEECCC
Confidence 2244568899888765
No 111
>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein ST and functional analyses, structural genomics; 2.90A {Thermus thermophilus}
Probab=21.40 E-value=59 Score=30.03 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.7
Q ss_pred ceEE-EEeCCCCCcccHHHHHHHH
Q 017615 24 NVKV-KLAESYGFCWGVERAVQIA 46 (368)
Q Consensus 24 ~mkI-~lA~~~GFC~GV~RAI~~a 46 (368)
.|++ +-|.-+|+|.||.+||..+
T Consensus 12 ~~~LIvnADDfGls~~vN~gI~~a 35 (264)
T 2e67_A 12 RRVLILHHDDLGLTHAQNGAYQAL 35 (264)
T ss_dssp SEEEEEEEEEETSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHhHHHHHHHH
Confidence 3564 5599999999999999988
No 112
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.20 E-value=3.5e+02 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=15.3
Q ss_pred cCCCE-EEEcCCCCCHHHHHHH
Q 017615 95 NKGDV-VVLPAFGAAVEEMVTL 115 (368)
Q Consensus 95 ~~g~~-VIIrAHGv~~~~~~~l 115 (368)
.++|. ++|+.-|-++++.+.+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH
T ss_pred CCCCEEEEEcCCCCcHHHHHHH
Confidence 45665 5689999998876654
No 113
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=21.12 E-value=69 Score=29.93 Aligned_cols=51 Identities=8% Similarity=-0.038 Sum_probs=32.6
Q ss_pred eEEecccccCHHHHHHHHhcCcEEec-CCcc----ccccccccCCCEEEEcCCCCCH
Q 017615 58 IWITNEIIHNPTVNKRLEEMAVQNIP-VEEG----KKQFDVVNKGDVVVLPAFGAAV 109 (368)
Q Consensus 58 Vy~lG~iIHN~~Vv~~L~~~GV~~v~-~~~~----~~~l~el~~g~~VIIrAHGv~~ 109 (368)
|=..++=-.++.+.+-|++.|+..+- +... ......+ .++.+.+|-||-+.
T Consensus 154 vE~Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~-t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 154 VEFRHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT-TTDYAYFRFHGRNE 209 (273)
T ss_dssp EECCBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-SSSEEEEEECCCCT
T ss_pred EEccCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-CCCceEEEEeCCCc
Confidence 33444545678999999999998763 2111 1111222 35789999999864
No 114
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=2.7e+02 Score=22.51 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=41.4
Q ss_pred CCceEEeccccc-CHHHH-HHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeC
Q 017615 55 EEKIWITNEIIH-NPTVN-KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT 125 (368)
Q Consensus 55 ~~~Vy~lG~iIH-N~~Vv-~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa 125 (368)
+..+...|.|-. ++..+ +.+++.|-++...... .=+.||.-.. ..+.-+++|++.|+.|||-
T Consensus 25 G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSk--------kTd~LV~G~~-~g~sKl~KA~~lgI~IisE 88 (112)
T 2ebu_A 25 GLIFVITGVLESIERDEAKSLIERYGGKVTGNVSK--------KTNYLVMGRD-SGQSKSDKAAALGTKIIDE 88 (112)
T ss_dssp TCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCS--------SCCEEEECSS-CCSHHHHHHHHHTCEEEEH
T ss_pred CCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccC--------CeeEEEecCC-CChHHHHHHHHcCCeEEeH
Confidence 456888899854 55544 4568889998865311 1245655543 3456788899999999974
No 115
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.71 E-value=1.3e+02 Score=26.89 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=35.2
Q ss_pred ccccCHHHHHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCcEEeCcCchhHHHHHHHHHHhh
Q 017615 63 EIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKK 142 (368)
Q Consensus 63 ~iIHN~~Vv~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~v~~~~~ 142 (368)
++=+-....+-|++.||.+- .=|++||=.|...++.+ +.+.+
T Consensus 34 D~~v~~~a~~~L~~~gI~~e----------------~~V~SAHRtp~~l~~~~----------------------~~a~~ 75 (181)
T 4b4k_A 34 DWETMKYACDILDELNIPYE----------------KKVVSAHRTPDYMFEYA----------------------ETARE 75 (181)
T ss_dssp GHHHHHHHHHHHHHTTCCEE----------------EEECCTTTSHHHHHHHH----------------------HHTTT
T ss_pred HHHHHHHHHHHHHHcCCCee----------------EEEEccccChHHHHHHH----------------------HHHHh
Confidence 34444555567777776432 35789998887777665 45667
Q ss_pred CCceEEEEe
Q 017615 143 GDYTSIIHG 151 (368)
Q Consensus 143 ~Gy~IIIiG 151 (368)
+|++|||.|
T Consensus 76 ~g~~ViIa~ 84 (181)
T 4b4k_A 76 RGLKVIIAG 84 (181)
T ss_dssp TTCCEEEEE
T ss_pred cCceEEEEe
Confidence 899999987
No 116
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.56 E-value=6e+02 Score=24.82 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=63.7
Q ss_pred hHHHHHHhcCCcceecceEEEEeCCCCCcc----cHHHHHHHHHHHHhh---CCCCceEEecccccCH----HHHHHHHh
Q 017615 8 DIIKKLKENGFEYTWGNVKVKLAESYGFCW----GVERAVQIAYEARKQ---FPEEKIWITNEIIHNP----TVNKRLEE 76 (368)
Q Consensus 8 ~~~~~~~~~~~~~~~g~mkI~lA~~~GFC~----GV~RAI~~a~~~~~~---~~~~~Vy~lG~iIHN~----~Vv~~L~~ 76 (368)
.+++.+++.. + ...+..|+-+..-||.. |...|++...+.+.. .....|=++|.. +++ ++..-|++
T Consensus 117 ~v~~~~~~~~-~-~~~~~pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~VNilg~~-~~~~d~~eik~lL~~ 193 (458)
T 1mio_B 117 TYISQMEDAG-S-IPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGF-VGPADMREIKRLFEA 193 (458)
T ss_dssp HHHHHHHHTT-C-SCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSCCCSCEEEECCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C-CCCCCeEEEEECCCCcccHHHHHHHHHHHHHHHHccccCCCCCcEEEECCC-CCHHHHHHHHHHHHH
Confidence 3455555541 1 11246788999999984 555555544333321 112358889877 334 45556688
Q ss_pred cCcEEec-----------------CCc-cccccccc---cCCC-EEEEcCCCCCHHHHHHHHhc-CCcEEeCcCchh
Q 017615 77 MAVQNIP-----------------VEE-GKKQFDVV---NKGD-VVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWV 130 (368)
Q Consensus 77 ~GV~~v~-----------------~~~-~~~~l~el---~~g~-~VIIrAHGv~~~~~~~l~~~-g~~iiDaTCP~V 130 (368)
.|+.++- ... +...++++ +... ++++... .....-+.|+++ |+..+-...|+-
T Consensus 194 ~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg~~~~ei~~~~~A~~niv~~~~-~~~~~A~~Le~~~GiP~~~~~~p~G 269 (458)
T 1mio_B 194 MDIPYIMFPDTSGVLDGPTTGEYKMYPEGGTKIEDLKDTGNSDLTLSLGSY-ASDLGAKTLEKKCKVPFKTLRTPIG 269 (458)
T ss_dssp HTCCEEESSCCTTTSSCCCCSSCCSSCSCSBCHHHHHTTSSCSEEEEESHH-HHHHHHHHHHHHSCCCEEEECCCBH
T ss_pred cCCcEEEeccccccccCcccCccceeCCCCCcHHHHHhhccCCEEEEEchh-hHHHHHHHHHHHhCCCEEecCCCcC
Confidence 9999874 111 11123333 2222 2444222 124455566654 788888777773
No 117
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=20.44 E-value=3.2e+02 Score=23.36 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=48.7
Q ss_pred HHHHHhcCcEEecCCccccccccccCCCEEEEcCCCCCHHHHHHHHhcCCc-EEeCcCchhHHHHHHHHHHhhCCceEEE
Q 017615 71 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSII 149 (368)
Q Consensus 71 v~~L~~~GV~~v~~~~~~~~l~el~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~v~~~~~~Gy~III 149 (368)
++.|+++|+.+.= + +-+-...+...+++.|+. +++..-|...-+....+++.-...+++.
T Consensus 61 l~~L~~~G~~~~i------------------v-T~~~~~~~~~~l~~lgi~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~ 121 (195)
T 3n07_A 61 VKALMNAGIEIAI------------------I-TGRRSQIVENRMKALGISLIYQGQDDKVQAYYDICQKLAIAPEQTGY 121 (195)
T ss_dssp HHHHHHTTCEEEE------------------E-CSSCCHHHHHHHHHTTCCEEECSCSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred HHHHHHCCCEEEE------------------E-ECcCHHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHHHhCCCHHHEEE
Confidence 7788888876431 1 112356677788888875 5888889888888888888777788999
Q ss_pred EecCC
Q 017615 150 HGKYS 154 (368)
Q Consensus 150 iG~~~ 154 (368)
+||..
T Consensus 122 vGD~~ 126 (195)
T 3n07_A 122 IGDDL 126 (195)
T ss_dssp EESSG
T ss_pred EcCCH
Confidence 99975
No 118
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=20.39 E-value=4.6e+02 Score=23.40 Aligned_cols=119 Identities=11% Similarity=0.066 Sum_probs=58.7
Q ss_pred ceeEEEEcCCCCh-HHHHHHHHHHHHHHhhhcccccccccccccCcccHHHHHHHHHHHHhhhhcCCEEEEe--------
Q 017615 218 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV-------- 288 (368)
Q Consensus 218 ~kv~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~eLa~~~vD~miVV-------- 288 (368)
.+|+++.-..++- .-|..+.+-+.+. .+.++ .++.+.++.-. ..+.++.++.|++..+|.+|++
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~-~~~~g-----~~~~~~~~~~~-~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~ 78 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNI-HSNLD-----VDVVLEEGVNS-EQKAHRRIKELVDGGVNLIFGHGHAFAEYF 78 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHH-HHHSC-----CEEEEECCCCS-HHHHHHHHHHHHHTTCCEEEECSTHHHHHH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHH-HHHhC-----CeEEEEeCCCC-HHHHHHHHHHHHHCCCCEEEEcCHhHHHHH
Confidence 4788886432322 3355555555432 22222 22333332211 2334457788877789999998
Q ss_pred -hhhhcc-CCCeEEeCCCCCcCCCCcchhhhccchh----hhhcccccCCCcEEEEeecCCCcH
Q 017615 289 -EIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHGEL----VEKENWLPKGQITIGITSGASTPD 346 (368)
Q Consensus 289 -eia~~~-~~~t~~Ie~~~eL~~~~~~~~~~~~~~~----~~~~~~l~~~~~~VGITAGASTP~ 346 (368)
+++++. +.|..+|.+..+- .+.-.....+.+. ..-...+ .+.++||..+|-..|.
T Consensus 79 ~~~~~~~p~~p~v~id~~~~~--~~~~~v~~d~~~g~~lag~la~~l-~~~~~Ig~i~g~~~~~ 139 (296)
T 2hqb_A 79 STIHNQYPDVHFVSFNGEVKG--ENITSLHFEGYAMGYFGGMVAASM-SETHKVGVIAAFPWQP 139 (296)
T ss_dssp HTTTTSCTTSEEEEESCCCCS--SSEEEEEECCHHHHHHHHHHHHHT-CSSSEEEEEESCTTCH
T ss_pred HHHHHHCCCCEEEEEecCcCC--CCEEEEEechHHHHHHHHHHHHhh-ccCCeEEEEcCcCchh
Confidence 444332 4567778764221 1111111111111 1001234 3579999999987775
No 119
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=20.00 E-value=1.2e+02 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=22.3
Q ss_pred CceEEecccccCHHHHHHHHhcC--cEEecC
Q 017615 56 EKIWITNEIIHNPTVNKRLEEMA--VQNIPV 84 (368)
Q Consensus 56 ~~Vy~lG~iIHN~~Vv~~L~~~G--V~~v~~ 84 (368)
.-|+.+|+|++ +.+.+.|++.+ +..|..
T Consensus 42 d~ii~~GDl~~-~~~~~~l~~~~~~~~~v~G 71 (192)
T 1z2w_A 42 QHILCTGNLCT-KESYDYLKTLAGDVHIVRG 71 (192)
T ss_dssp SEEEECSCCBS-HHHHHHHHHHCSEEEECCC
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCCEEEEcC
Confidence 46999999996 78889999988 555654
Done!