Your job contains 1 sequence.
>017616
MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD
PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADS
DALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKIL
VPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIAR
NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL
IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI
SKMVASAN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017616
(368 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 659 1.1e-64 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 304 2.1e-26 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 257 2.6e-21 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 227 1.7e-16 1
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 198 2.3e-13 2
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 194 1.2e-12 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 192 2.4e-12 2
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 189 4.7e-12 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 183 6.1e-12 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 184 2.5e-11 3
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 185 3.6e-11 2
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 182 4.0e-11 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 172 4.6e-11 2
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 182 6.4e-11 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 178 7.8e-11 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 179 9.7e-11 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 174 1.1e-10 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 178 1.4e-10 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 177 1.5e-10 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 177 1.5e-10 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 177 1.5e-10 1
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 177 1.5e-10 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 177 1.5e-10 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 169 2.0e-10 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 167 7.4e-10 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 169 8.8e-10 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 160 3.3e-09 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 158 5.8e-09 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 157 8.0e-09 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 155 1.3e-08 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 150 1.1e-07 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 143 2.1e-07 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 136 1.5e-06 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 134 2.4e-06 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 137 3.4e-06 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 131 5.1e-06 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 131 5.1e-06 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 131 5.1e-06 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 128 1.1e-05 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 128 1.2e-05 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 121 7.2e-05 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 120 9.2e-05 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 116 0.00029 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 113 0.00059 1
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 151/329 (45%), Positives = 204/329 (62%)
Query: 41 SARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQK-STSCIGQDAS 98
+ R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++ + S
Sbjct: 82 ATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKENIGVGSAERSYS 141
Query: 99 SRS--DFRLLMENLDVLESTFADSDALRLEREIXXXXXXXXXXXXFNSHLSRIVKTSNVL 156
SRS + LL +NL LE TF D++R+ER+I F + LSR +S
Sbjct: 142 SRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITS 201
Query: 157 DLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVXXXXXXXXXXXXXXXALQEG 216
LSD TE + D+ ++ V S+RK K+K + + V
Sbjct: 202 CLSDT-TE---LVDTTPNQ--QVFVSSRRKVKKKARRSSVTAENGDQSSLPIGLRTTWNN 255
Query: 217 LKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
+ P + R R +R I+RNE EMS GV++VA++ERI+T LE+ESGK ASL+CWA
Sbjct: 256 IDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWA 312
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI DL+QAG VGVLQG
Sbjct: 313 AAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQG 372
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVA 365
AERFDHTRGYKFSTYVQYWIRKS+S MV+
Sbjct: 373 AERFDHTRGYKFSTYVQYWIRKSMSTMVS 401
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 304 (112.1 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 57/139 (41%), Positives = 94/139 (67%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVL 286
R S + LT+ R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L
Sbjct: 264 RMTTSSSKLLTV-REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSL 322
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+Q + G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+
Sbjct: 323 RQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGF 382
Query: 347 KFSTYVQYWIRKSISKMVA 365
KFSTY +WI++++ K ++
Sbjct: 383 KFSTYAHWWIKQAVRKSLS 401
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 257 (95.5 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 50/131 (38%), Positives = 83/131 (63%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMV 364
+WIR+SI K +
Sbjct: 365 WWIRQSIRKSI 375
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 227 (85.0 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 43/126 (34%), Positives = 75/126 (59%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E + +Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 359 SISKMV 364
SI K +
Sbjct: 396 SIKKSI 401
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 198 (74.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 43/113 (38%), Positives = 68/113 (60%)
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE + T++E+ + L A G +R + L RE++ + R LV+ +A
Sbjct: 139 AKLENLGTSVEENEMVSVLL---ASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIA 195
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WI+++I + +A
Sbjct: 196 TGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIA 248
Score = 37 (18.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERI 258
I S +R R RR+ R E E + V A E I
Sbjct: 74 IQSEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETI 110
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 43/149 (28%), Positives = 81/149 (54%)
Query: 220 PTIFSAERALNSRG---RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
P + + + RG + L + +S ++ L++ ++ L+++ G S A
Sbjct: 197 PELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLA 256
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+ +S L+ + + RE L S LV+ +A+ Y LG+ +DL+Q G +G+L+G
Sbjct: 257 HSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRG 316
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVA 365
E+FD +RG++ STYV +WIR+ +S+ +A
Sbjct: 317 IEKFDASRGFRISTYVYWWIRQGVSRALA 345
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 192 (72.6 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 45/134 (33%), Positives = 81/134 (60%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLA 291
G+ + ++ +A+ K + V + E+ +E+ESG KA L+ +A E K LA
Sbjct: 285 GKGIKLSLEDAQ--KHEKKVRSAEKKLKKVEEESGFKARELSDALRAIDRGEA--KSKLA 340
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
+ EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY
Sbjct: 341 -----KSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 395
Query: 352 VQYWIRKSISKMVA 365
+WIR++I++ +A
Sbjct: 396 ATWWIRQAITRAIA 409
Score = 40 (19.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 70 VNTQTVENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADS--DALRLER 127
++ + E + E EE QK+ + + D RL N ++ E + + S L ER
Sbjct: 160 ISKEVEEEELEEDEEDVQKTRLLAQVEEIAAVDVRLAALNAELEEESLSASRRQELLAER 219
Query: 128 E 128
+
Sbjct: 220 Q 220
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 189 (71.6 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 34/78 (43%), Positives = 55/78 (70%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVA 365
FSTY +WIR++I++ +A
Sbjct: 343 FSTYATWWIRQAITRAMA 360
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 183 (69.5 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 32/73 (43%), Positives = 53/73 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 83 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYA 142
Query: 353 QYWIRKSISKMVA 365
+WIR++I++ +A
Sbjct: 143 TWWIRQAITRGMA 155
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 184 (69.8 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 29/69 (42%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RGYKFSTY +W+
Sbjct: 391 KQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWV 450
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 451 RQAITRAIA 459
Score = 38 (18.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 25 CRLSSTSVRGREGSFNSAR 43
C +SS + REG A+
Sbjct: 104 CEMSSVELLSREGEIEIAK 122
Score = 38 (18.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 17/86 (19%), Positives = 36/86 (41%)
Query: 75 VENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVLESTFADSDALRLEREIXXXXX 134
V+ + S +E + S +G + + LL + + +L+ST ++ + LE +
Sbjct: 202 VDPESSLDDEADEDDESSLGNASILEMESALLPKVISILDSTIEAAEKI-LEMKKKKRDG 260
Query: 135 XXXXXXXFNSHLSRIVKTSNVLDLSD 160
+N I + + + LSD
Sbjct: 261 GEYDENAYNELHDSIWEMVSQMKLSD 286
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 185 (70.2 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 30/80 (37%), Positives = 56/80 (70%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVA 365
YKFSTY +W+R++I++ +A
Sbjct: 435 YKFSTYATWWVRQAITRAIA 454
Score = 38 (18.4 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 25 CRLSSTSVRGREGSFNSAR 43
C +SS + REG A+
Sbjct: 106 CEMSSVELLSREGEIEIAK 124
Score = 37 (18.1 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 60 DPVKAYTCSFVNTQTV--ENDYSETEEIRQKSTSCIGQDASSRSDFRLLMENLDVL 113
DP++ Y C + + + E + ++I+ + + + S R M D L
Sbjct: 99 DPIRMYLCEMSSVELLSREGEIEIAKKIKSEKVNMLRSLVESPIVLRTFMSWRDDL 154
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 182 (69.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R + HL + ++++ LV+ +A+ Y G+PF DL+Q GN+G+++ ++FDH
Sbjct: 349 RKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHR 408
Query: 344 RGYKFSTYVQYWIRKSISKMVA 365
RG+KFSTY +W R++I++ +A
Sbjct: 409 RGHKFSTYATWWCRQAITRAIA 430
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 172 (65.6 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 29/68 (42%), Positives = 50/68 (73%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
R+++I++ LV+ +AR+Y G+PF DL++ GN+G+L E+FD RG++FSTY +WI
Sbjct: 114 RKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWI 173
Query: 357 RKSISKMV 364
R++I + +
Sbjct: 174 RQTIERAI 181
Score = 42 (19.8 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 178 KILVPSKRKGKRKLKTAR 195
KI PSKRK K+ K +R
Sbjct: 16 KIKKPSKRKIKKTAKKSR 33
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 182 (69.1 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 30/66 (45%), Positives = 49/66 (74%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVA 365
IS+ +A
Sbjct: 445 ISRAIA 450
Score = 39 (18.8 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 147 SRIVKTSNVLDLSDVHTEEQKMNDS 171
+ I + N+ D + E+QK+ D+
Sbjct: 58 AEIAQMKNIEDAKRLQEEKQKLQDT 82
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 178 (67.7 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 41/126 (32%), Positives = 74/126 (58%)
Query: 238 IARNEAEMSKGVQVVANLERIKTTLEKE-SGKAASLNCWAQAAGVSERVLKQHLAFGWYC 296
+ R ++ G+++ + R+K L E S + +++ A + +++ HLA
Sbjct: 205 VVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLA----- 259
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
RE+L S LV+ +A+ Y LG SDL+Q G +G+L+G E+FD ++G++ STYV +WI
Sbjct: 260 REKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWI 319
Query: 357 RKSISK 362
R+ +S+
Sbjct: 320 RQGVSR 325
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 179 (68.1 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 43/142 (30%), Positives = 80/142 (56%)
Query: 232 RGRRLT---IARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLK 287
RGR L +A + +G Q+ +ER +E+ A + + +SE R +
Sbjct: 353 RGRELDPNWLAEMAEKPGRGWQMF--IERSSDKVEELRADMAQVGQYV-GLDISEFRRIV 409
Query: 288 QHLAFGW----YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
Q + G ++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++
Sbjct: 410 QQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 469
Query: 344 RGYKFSTYVQYWIRKSISKMVA 365
RGYKFSTY +WIR++I++ +A
Sbjct: 470 RGYKFSTYATWWIRQAITRSIA 491
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 30/69 (43%), Positives = 51/69 (73%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
+ +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD+ +GYKFSTY +WI
Sbjct: 134 KRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWI 193
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 194 RQAITRAIA 202
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 178 (67.7 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 28/69 (40%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E+I++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 459 KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 518
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 519 RQAITRSIA 527
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/69 (39%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 376 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 435
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 436 RQAITRSIA 444
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/69 (39%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 378 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 437
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 438 RQAITRSIA 446
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/69 (39%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 379 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 438
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 439 RQAITRSIA 447
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/69 (39%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 448 RQAITRSIA 456
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/69 (39%), Positives = 52/69 (75%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WI
Sbjct: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 448 RQAITRSIA 456
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 169 (64.5 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/68 (41%), Positives = 48/68 (70%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
R+ +I+S LV+ +AR Y G+P DL++ GN+G+++ E+FD RG++FSTY +WI
Sbjct: 57 RKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 116
Query: 357 RKSISKMV 364
R++I + +
Sbjct: 117 RQTIERAI 124
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 167 (63.8 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 28/69 (40%), Positives = 50/69 (72%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WI
Sbjct: 137 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWI 196
Query: 357 RKSISKMVA 365
R++I++ +A
Sbjct: 197 RQAITRAIA 205
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 169 (64.5 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 29/66 (43%), Positives = 49/66 (74%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ + G G+P DL+Q GN+G+++ E+FD RG+KFSTY +WIR++
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 360 ISKMVA 365
I++ +A
Sbjct: 347 ITRAIA 352
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 160 (61.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WI
Sbjct: 87 RNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 146
Query: 357 RKSISKMV 364
R++I + +
Sbjct: 147 RQTIERAI 154
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 158 (60.7 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
R +I+S LV+ +AR Y G+ DL++ GN+G+++ E+FD RG++FSTY +WI
Sbjct: 91 RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 150
Query: 357 RKSISKMV 364
R++I + +
Sbjct: 151 RQTIERAI 158
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 157 (60.3 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 41/138 (29%), Positives = 73/138 (52%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC---WAQAAGVS------ERVL 286
L + +AE++ ++VA + E+ A SL+ + G S E VL
Sbjct: 20 LEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVL 79
Query: 287 --KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
++ L R+ +I+S LV+ ++R Y G+ DL++ GN+G+++ E+FD R
Sbjct: 80 YARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPER 139
Query: 345 GYKFSTYVQYWIRKSISK 362
G++FSTY +WIR++I +
Sbjct: 140 GFRFSTYATWWIRQTIER 157
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 155 (59.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/85 (36%), Positives = 55/85 (64%)
Query: 283 ERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E+ L +A G R+++I+S LV+ +A+ Y G+PF DL++ GN+G+++ ERF
Sbjct: 78 EKELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFK 137
Query: 342 HTRGYKFSTYVQYWIRKSISKMVAS 366
++ +FSTY +WIR+SI + + +
Sbjct: 138 LSKECRFSTYATWWIRQSIERALVN 162
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 41/136 (30%), Positives = 68/136 (50%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
LT A++ + + +Q + + +K LE E + A+A +S +++HL G
Sbjct: 204 LTSAQS-IRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 296 CREELIKSTRPLVLFLARNY---RGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
R +LIK LVL+ Y F D+ QAG G++ +RF+ RG++ STY
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 353 QYWIRKSISKMVASAN 368
+WIR SI + + +N
Sbjct: 323 LFWIRHSIVRAITLSN 338
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 143 (55.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 273 NCWAQAAGVSERVLKQHLAF-G-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
N W + ER L + L + G + LI S V+ +ARNY G G+P +DL+Q GN
Sbjct: 24 NAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGN 83
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
+G+++ RF+ G + ++ +WI+ I + V
Sbjct: 84 IGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYV 117
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/66 (33%), Positives = 42/66 (63%)
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
+++ S L +A YRG G+P ++++ NVG++Q +RFD +G++ +TY +WIR
Sbjct: 52 KMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRA 111
Query: 359 SISKMV 364
+I + +
Sbjct: 112 AIQEYI 117
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 290 LAFGWYC-REE-----LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
LA+ W R+E LI + L + +A ++ G P +DL+Q +G+++ A++FD
Sbjct: 29 LAYAWRDHRDEAALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPD 88
Query: 344 RGYKFSTYVQYWIRKSISKMV 364
RG +FSTY +WI+ SI V
Sbjct: 89 RGVRFSTYAVWWIKASIQDYV 109
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 137 (53.3 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 243 AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
A + K +Q + L +K L+K G+ A ++ +K+ + G R +LIK
Sbjct: 226 AWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIK 285
Query: 303 STRPLVLFLARNYRGL---GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LVLF+ Y G F DL QAG G++ +RF+ R ++ STY +WIR +
Sbjct: 286 HNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHA 345
Query: 360 ISKMVASAN 368
I + + ++N
Sbjct: 346 IIRSMTTSN 354
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
+ELI S V+ +A+ Y G G+P +DL+Q GNVG+++ +RF+ G + ++ +WI+
Sbjct: 50 QELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVHWIK 109
Query: 358 KSISKMV 364
I + V
Sbjct: 110 AEIHEFV 116
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 271 SLNCWAQAAGVSERVLKQHLAF-GWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
S+N + + ER L + L + G + LI S V+ +AR Y G G+P +DL+Q
Sbjct: 22 SVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQE 81
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
GN+G+++ +RF+ G + ++ +WI+ I + V
Sbjct: 82 GNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 131 (51.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 271 SLNCWAQAAGVSERVLKQHLAF-GWY-CREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
S+N + + ER L + L + G + LI S V+ +AR Y G G+P +DL+Q
Sbjct: 22 SVNGYPMLSADEERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQE 81
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
GN+G+++ +RF+ G + ++ +WI+ I + V
Sbjct: 82 GNIGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEYV 117
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++LI S V+ +A+ Y G G+P +DL+Q GN+G+++ +RFD G + ++ +WI+
Sbjct: 54 KQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIK 113
Query: 358 KSISKMV 364
I + V
Sbjct: 114 AEIHEYV 120
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
+L+ S LV+ +A +R G+P +L+ GN+G++Q ++F+ G++ STY +WI+
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 359 SISKMV 364
SI +
Sbjct: 110 SIKDYI 115
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 121 (47.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
+L+ S V+ +AR Y G G+ +DL+Q GN+G+++ +RFD G + ++ +WIR
Sbjct: 54 KLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRA 113
Query: 359 SISKMV 364
I + +
Sbjct: 114 EIHEFI 119
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 120 (47.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI S V+ +A YR G+ DL+Q GNVG++ +F+ +G + +Y +WIR
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAY 108
Query: 360 ISKMVASA 367
I + SA
Sbjct: 109 IQNHIISA 116
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 287 KQHLAFGWYCR------EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
+ LA WY L+ S LV+ +A +++ +P +L+ GN+G++Q ++F
Sbjct: 32 EDRLARNWYENGIVADAHRLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKF 91
Query: 341 DHTRGYKFSTYVQYWIRKSISKMV 364
+ T G++ STY +WI+ I +
Sbjct: 92 NPTLGFRLSTYAIWWIKAFIKDYI 115
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
+ L+++ LV+ + +R G P DL GN+G+++ + F+ T G+ +TY +WI+
Sbjct: 48 QRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIATYAIWWIK 107
Query: 358 KSISKMV 364
+I++ V
Sbjct: 108 AAINEYV 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.129 0.366 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 368 341 0.00095 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 44
No. of states in DFA: 605 (64 KB)
Total size of DFA: 210 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.76u 0.14s 25.90t Elapsed: 00:00:01
Total cpu time: 25.76u 0.14s 25.90t Elapsed: 00:00:01
Start: Mon May 20 20:54:37 2013 End: Mon May 20 20:54:38 2013