Query 017617
Match_columns 368
No_of_seqs 189 out of 1046
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 10:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02754 chorismate synthase 100.0 6E-138 1E-142 1031.2 33.8 338 29-366 1-338 (413)
2 COG0082 AroC Chorismate syntha 100.0 1E-134 3E-139 990.1 30.7 305 53-366 1-307 (369)
3 PF01264 Chorismate_synt: Chor 100.0 5E-131 1E-135 967.6 22.0 302 61-366 1-302 (346)
4 cd07304 Chorismate_synthase Ch 100.0 4E-128 9E-133 946.8 32.3 303 61-366 1-304 (344)
5 TIGR00033 aroC chorismate synt 100.0 5E-128 1E-132 947.8 32.5 303 61-366 1-303 (351)
6 PRK05382 chorismate synthase; 100.0 5E-126 1E-130 935.7 30.9 299 59-366 1-300 (359)
7 PRK12463 chorismate synthase; 100.0 1E-125 3E-130 940.6 31.8 304 61-366 1-323 (390)
8 KOG4492 Chorismate synthase [A 100.0 1.9E-95 4E-100 694.3 20.4 312 55-366 2-313 (368)
9 KOG4492 Chorismate synthase [A 98.9 2.7E-11 5.8E-16 117.6 -6.7 138 228-366 191-329 (368)
10 cd07304 Chorismate_synthase Ch 83.9 2 4.3E-05 43.8 5.5 79 60-139 190-294 (344)
11 PF01264 Chorismate_synt: Chor 80.0 0.68 1.5E-05 47.2 0.6 78 61-139 189-292 (346)
12 COG0082 AroC Chorismate syntha 75.2 5.4 0.00012 41.1 5.4 132 62-199 196-353 (369)
13 PF08712 Nfu_N: Scaffold prote 73.6 2.6 5.6E-05 34.6 2.3 31 284-314 35-65 (87)
14 PRK05382 chorismate synthase; 62.5 16 0.00034 37.7 5.7 72 257-355 8-80 (359)
15 TIGR00033 aroC chorismate synt 61.9 20 0.00043 36.9 6.3 80 60-139 189-293 (351)
16 PRK12463 chorismate synthase; 55.9 26 0.00056 36.6 5.9 71 257-354 6-77 (390)
17 PLN02948 phosphoribosylaminoim 53.6 25 0.00055 37.9 5.7 64 245-311 452-532 (577)
18 TIGR01162 purE phosphoribosyla 48.2 53 0.0011 30.2 6.1 86 192-310 17-119 (156)
19 PRK09536 btuD corrinoid ABC tr 27.3 62 0.0013 33.5 3.5 79 189-283 280-358 (402)
20 TIGR02725 phenyl_P_gamma pheny 27.2 54 0.0012 26.7 2.3 45 262-306 17-61 (84)
21 COG0250 NusG Transcription ant 26.0 1.7E+02 0.0036 27.2 5.7 53 73-125 84-139 (178)
22 PF00220 Hormone_4: Neurohypop 23.6 30 0.00065 17.9 0.2 9 267-275 1-9 (9)
23 COG1217 TypA Predicted membran 22.1 50 0.0011 35.9 1.7 33 132-165 54-86 (603)
24 smart00739 KOW KOW (Kyprides, 21.8 79 0.0017 19.5 2.0 16 111-126 3-18 (28)
25 smart00609 VIT Vault protein I 21.5 1.4E+02 0.0029 26.3 4.0 29 246-275 82-119 (130)
26 PF12242 Eno-Rase_NADH_b: NAD( 21.4 1.6E+02 0.0035 24.4 4.1 54 243-303 19-72 (78)
27 PLN02754 chorismate synthase 21.1 65 0.0014 34.0 2.2 134 60-199 223-383 (413)
28 smart00463 SMR Small MutS-rela 20.6 2.6E+02 0.0056 21.7 5.1 55 241-303 12-66 (80)
No 1
>PLN02754 chorismate synthase
Probab=100.00 E-value=6.4e-138 Score=1031.19 Aligned_cols=338 Identities=88% Similarity=1.337 Sum_probs=322.4
Q ss_pred ccCCCCceeeecccCCcchhhcccccccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCC
Q 017617 29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITT 108 (368)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t 108 (368)
|.+++.+||++++.+.+++|+++|++|+||++|||||||||||++||||||||||||+||+|+||+||+||||||++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~RRrpG~~~~~t 80 (413)
T PLN02754 1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDRRRPGQSRITT 80 (413)
T ss_pred CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhccCCCCCCCCc
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEccccCCeecCCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHH
Q 017617 109 PRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAP 188 (368)
Q Consensus 109 ~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaA 188 (368)
||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||||++|||+|||||||||||||||+||||
T Consensus 81 ~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa~rVaA 160 (413)
T PLN02754 81 PRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAA 160 (413)
T ss_pred CCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 017617 189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268 (368)
Q Consensus 189 GaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~ 268 (368)
||||||||++.+||+|.|||++||+|+.++...+....+++++++++++|||++++++|+++|++||++||||||+|||+
T Consensus 161 GaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGGivev~ 240 (413)
T PLN02754 161 GAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 240 (413)
T ss_pred HHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 99999999764699999999999999753211121222367899999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCccccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcc
Q 017617 269 VRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348 (368)
Q Consensus 269 v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~p 348 (368)
++|||+|||||+|||||++||+||||||||||||||+||++++|+|||+||+|+++++|+++|+|||+|||+||||||||
T Consensus 241 ~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~p 320 (413)
T PLN02754 241 VRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGISNGEI 320 (413)
T ss_pred EECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999987668899999999999999999999
Q ss_pred eEEEEEEccCCccccccc
Q 017617 349 INMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 349 Iv~rva~KPtpSI~~~q~ 366 (368)
|+||++|||||||.+||+
T Consensus 321 Iv~rva~KPtpSI~k~q~ 338 (413)
T PLN02754 321 IVMRIAFKPTSTIGKKQN 338 (413)
T ss_pred EEEEEEeCCCcccccccc
Confidence 999999999999999997
No 2
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-134 Score=990.11 Aligned_cols=305 Identities=55% Similarity=0.882 Sum_probs=296.4
Q ss_pred ccccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcE
Q 017617 53 AGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 132 (368)
Q Consensus 53 m~ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPI 132 (368)
|+|+||++|||||||||||++||||||||||||+|++||||.||+||||||++++|||+|+|+||||||||+|+||||||
T Consensus 1 ~~nt~G~~fr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPI 80 (369)
T COG0082 1 MGNTFGRLFRVTTFGESHGPALGAVIDGCPAGLELSEEDIQKELDRRRPGYSRGTTMRKEKDEVEILSGVFEGKTTGTPI 80 (369)
T ss_pred CCCcccceEEEEeecccCCCeeEEEEeccCCCCccCHHHHHHHHHhcCCCCCCCcccccCCcceEEeeeeecCccCCCce
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeee
Q 017617 133 HVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 212 (368)
Q Consensus 133 a~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG 212 (368)
+++|+|+||+||||+++++.||||||||||++|||++||||||||||||||+|||||||||+||++ +||+|.+||++||
T Consensus 81 ~l~I~N~d~~s~~y~~~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvAKk~L~~-~gi~v~~~v~~iG 159 (369)
T COG0082 81 ALLIENTDQRSKDYSMIKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVAKKLLRE-LGIEVLGHVVSIG 159 (369)
T ss_pred EEEEEcCCCCccchhhcccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHHHHHHHh-CCeEEEEeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ceecCCCCCCcccccHHhhhc--CCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHH
Q 017617 213 NVVLPEDVVDHEMLTLDQVES--NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAK 290 (368)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~i~~--~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~ 290 (368)
+++.+.. .+++++++ |+++|||++++++|+++|+++|++||||||+|||+|.|||+|||+|+||||||+||+
T Consensus 160 ~~~~~~~------~~~~~~~~~~sp~~~pd~e~~~~m~~~i~~~k~~GDSiGgvvevva~gvP~GLG~pvfdkLda~lA~ 233 (369)
T COG0082 160 GIEADDS------LDFEEVEQRASPVRCPDPEAEEEMEELIDKAKKEGDSIGGVVEVVAEGVPAGLGEPVFDKLDAKLAH 233 (369)
T ss_pred CCccccc------CCHHHHhhccCCccCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCCCCCCcccccchHHHHH
Confidence 9987531 45677777 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 291 AMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 291 almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
||||||||||||||+||++++|+|||+||+|++++ +++++|||+|||||||||||||++|++|||||||++||+
T Consensus 234 AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~--~~~~~tN~~GGilGGitnG~pIv~r~a~KPt~SI~kp~~ 307 (369)
T COG0082 234 ALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG--GIVRKTNNAGGILGGITNGEPIVVRVAFKPTPSIYKPQR 307 (369)
T ss_pred HhhCCccceeEEeccchhhhhcccccccCceeeCC--CeeEccccCCceeccccCCccEEEEEEeCCCCccCcccc
Confidence 99999999999999999999999999999999965 799999999999999999999999999999999999997
No 3
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=100.00 E-value=4.8e-131 Score=967.57 Aligned_cols=302 Identities=53% Similarity=0.850 Sum_probs=273.8
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecCC
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D 140 (368)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N~d 80 (346)
T PF01264_consen 1 FRVTTFGESHGPAIGVVIDGCPAGLPIDEEDIQKELDRRRPGYGRGTTMRKEKDEVEILSGVFEGKTTGAPIAMIIRNKD 80 (346)
T ss_dssp SEEEEEESTTSSEEEEEEES--BTEB--HHHHHHHHHHHTCSTTCCCCHHHCSCEEEEEESEETTEEESS-EEEEEE-TT
T ss_pred CeEeeeecCCCCeeEEEEcCCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCeEEEEeceECCEeCCCCeEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeeceecCCCC
Q 017617 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (368)
Q Consensus 141 ~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~ 220 (368)
|+||||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++.
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~-- 157 (346)
T PF01264_consen 81 QRSWDYEELKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAIAKQLLEE-LGIEIRSHVSSIGGIEDRE-- 157 (346)
T ss_dssp CHHCTTCTSTSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETTEEECC--
T ss_pred CCCcchhhhhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEhheeCCEeccc--
Confidence 9999999999999999999999999999999999999999999999999999999997 6999999999999999863
Q ss_pred CCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeE
Q 017617 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (368)
Q Consensus 221 ~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKG 300 (368)
......+++++++++++|||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+||||||||||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~fdkLda~la~al~sIpAvKg 237 (346)
T PF01264_consen 158 DDPSEEDFEKIEESPVRCPDPEAEEEMKELIDEAKKEGDSLGGIVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVKG 237 (346)
T ss_dssp HHHHHHHHHHHHHSTTSBSSHHHHHHHHHHHHHHHHTTGGB-EEEEEEEES--TT-SBSSCCSHHHHHHHHHHTSTTEEE
T ss_pred ccchhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCCCCcCcHHHHHHHHhhCCCCeee
Confidence 22334567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 301 vEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
||||+||++|+|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+
T Consensus 238 vEfG~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~aGGI~GGISnG~pIv~r~a~KPtpSI~~~q~ 302 (346)
T PF01264_consen 238 VEFGDGFEAASMRGSEVNDEIYYDD-GKIKRKTNNAGGILGGISNGMPIVFRVAFKPTPSIAKPQK 302 (346)
T ss_dssp EEETTGGGGGGSBHHHHS-SEEECT-TTEEESS-TTTTEETTEEBSS-EEEEEEE--SS--SSCEE
T ss_pred EEecCcHHHhhcchhhcccceeccc-ccccccCCCcccccccccCCceEEEEEEeccccccccccc
Confidence 9999999999999999999999975 6899999999999999999999999999999999999996
No 4
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=100.00 E-value=4e-128 Score=946.78 Aligned_cols=303 Identities=57% Similarity=0.872 Sum_probs=290.7
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecCC
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D 140 (368)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~~ig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (344)
T cd07304 1 FRVTTFGESHGPALGVVIDGCPAGLPLDEEDIQKELDRRRPGQGRGTTPRIEKDEVEILSGVFEGKTTGTPIALLIRNKD 80 (344)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCC-CcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeeceecCCC
Q 017617 141 QRGHDYSEMSVAYRPSHADATYDMKYGV-RSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPED 219 (368)
Q Consensus 141 ~~s~DY~~~~~~pRPGHAD~t~~~KYg~-rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~ 219 (368)
|+||||+++++.||||||||||++|||+ +|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~~ 159 (344)
T cd07304 81 QRSWDYSMLKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLLKE-FGIEVVAHVKSIGGIEDEPF 159 (344)
T ss_pred CCCcchhhccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecCcc
Confidence 9999999999999999999999999987 999999999999999999999999999998 59999999999999987532
Q ss_pred CCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCcee
Q 017617 220 VVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATK 299 (368)
Q Consensus 220 ~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVK 299 (368)
... ...+++++++++++|||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+|||||||||
T Consensus 160 ~~~-~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~klda~la~a~~sIpAvK 238 (344)
T cd07304 160 DLD-EEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGDSVGGVVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVK 238 (344)
T ss_pred ccc-chhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCcee
Confidence 111 1113678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 300 GFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 300 GvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
|||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||++||+
T Consensus 239 gve~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~TN~aGGI~GGISnG~pIv~rva~KP~pSi~~~q~ 304 (344)
T cd07304 239 GVEIGSGFEAARMRGSEVNDEIYYDE-GGIKTKTNNAGGILGGISNGEPIVFRVAFKPTPSIAKPQK 304 (344)
T ss_pred EEEECcchhhhhccCcccCcceeeCC-CceeecccCccCccccccCCCcEEEEEEeCCCcccccccc
Confidence 99999999999999999999999975 5899999999999999999999999999999999999996
No 5
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=100.00 E-value=4.7e-128 Score=947.85 Aligned_cols=303 Identities=58% Similarity=0.926 Sum_probs=290.2
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecCC
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D 140 (368)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~l~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (351)
T TIGR00033 1 FRVTTFGESHGKAVGAIIDGCPAGLPLTEEDIQPDLDRRRPGYSRGTRMRKENDEVEILSGVFEGKTTGAPIALMIRNKD 80 (351)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeeceecCCCC
Q 017617 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (368)
Q Consensus 141 ~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~ 220 (368)
++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++.+||+|.|||++||+|+++..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~~~gI~i~s~v~~IG~i~~~~~- 159 (351)
T TIGR00033 81 VRSSDYSDIRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAETSGIEIVAYVTQIGEVEIPRV- 159 (351)
T ss_pred CCcccchhccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEECCEecCcc-
Confidence 9999999999999999999999999999999999999999999999999999999977469999999999999975421
Q ss_pred CCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeE
Q 017617 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (368)
Q Consensus 221 ~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKG 300 (368)
.....+++++++++++|||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+||||||||||
T Consensus 160 -~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKg 238 (351)
T TIGR00033 160 -YYDPEEKERVDSSPVRCPDPEAEKEMVAEIDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKG 238 (351)
T ss_pred -ccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeE
Confidence 1112246789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 301 vEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||.+||+
T Consensus 239 vE~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~~GGI~GGISnG~pIv~r~a~KP~pSI~~~q~ 303 (351)
T TIGR00033 239 VEIGDGFELASMRGSEANDEFVFED-GGIRRKTNNSGGILGGITNGEPIRVRIAFKPTPTIGKPQK 303 (351)
T ss_pred EEECcchhhccccccccccceEeCC-CceEecCcCcccccccccCCCcEEEEEEeCCCcccccccc
Confidence 9999999999999999999999864 7899999999999999999999999999999999999997
No 6
>PRK05382 chorismate synthase; Validated
Probab=100.00 E-value=5.1e-126 Score=935.65 Aligned_cols=299 Identities=56% Similarity=0.872 Sum_probs=286.7
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEec
Q 017617 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (368)
Q Consensus 59 ~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N 138 (368)
++|||+|||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|
T Consensus 1 ~~~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N 80 (359)
T PRK05382 1 KLFRVTTFGESHGPALGAVIDGCPAGLPLTEEDIQKELDRRRPGYSRGTTMRIEPDEVEILSGVFEGKTTGTPIALLIRN 80 (359)
T ss_pred CeEEEEEEecCCCCeeEEEEcCCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeeceecCC
Q 017617 139 TDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE 218 (368)
Q Consensus 139 ~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i~~~~ 218 (368)
+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+++.+
T Consensus 81 ~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~- 158 (359)
T PRK05382 81 TDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE-LGIEVRGHVVQIGGIEAD- 158 (359)
T ss_pred CCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcCCcCC-
Confidence 999999999999999999999999999999999999999999999999999999999986 799999999999999753
Q ss_pred CCCCcccccH-HhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCc
Q 017617 219 DVVDHEMLTL-DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA 297 (368)
Q Consensus 219 ~~~~~~~~~~-~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpA 297 (368)
.+ ..++ +++++|+++|||++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+|||||||
T Consensus 159 --~~--~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~la~a~msIpA 234 (359)
T PRK05382 159 --LD--WEEVEERADANPVRCPDPEAEEEMEELIDEAKKEGDSLGGVVEVVAEGVPAGLGEPVFDKLDADLAHALMSINA 234 (359)
T ss_pred --CC--HHHHHhHhhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCc
Confidence 11 1123 467889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 298 TKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 298 VKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
|||||||+||++|.|+|||+||+|+++ +++|+|||+|||+|||||||||+||++|||||||.+||+
T Consensus 235 vKgvE~G~Gf~~a~~~GSe~nD~~~~~---~~~~~tN~~GGI~GGISnG~pIv~rva~KP~pSi~~~q~ 300 (359)
T PRK05382 235 VKGVEIGDGFAAARLRGSEVNDEIYYT---GIGRLTNHAGGILGGISNGEPIVVRVAFKPTPSIRKPQR 300 (359)
T ss_pred eeEEEECcchhhccccCcccCceeecC---CCeecccCCCCccccccCCCcEEEEEEecCcchhccccc
Confidence 999999999999999999999999752 489999999999999999999999999999999999996
No 7
>PRK12463 chorismate synthase; Reviewed
Probab=100.00 E-value=1.2e-125 Score=940.61 Aligned_cols=304 Identities=39% Similarity=0.574 Sum_probs=288.2
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecCC
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D 140 (368)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~tt~GESHG~~ig~VIdG~PaGl~l~~e~I~~~L~RR~pG~~~~~t~r~E~D~v~ilSGv~~G~TtGtPI~~~I~N~D 80 (390)
T PRK12463 1 MRYITAGESHGPQLTVILEGVPAGLTLAAEHINKELLRRQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLIVKNDD 80 (390)
T ss_pred CeEeecccCCCceeEEEEcCCCCCCccCHHHHHHHHhccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------------CCCccccccCCCCCccccccccccCCCcCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEE
Q 017617 141 QR---------------GHDYSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEI 204 (368)
Q Consensus 141 ~~---------------s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~GI~I 204 (368)
|+ |+||+++++.||||||||||++|||++|+||| |||||||||+||||||||||||++ +||+|
T Consensus 81 ~~nw~~~m~~~~~~~~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgglgr~SaReTa~rVaaGavAk~~L~~-~gI~i 159 (390)
T PRK12463 81 FKHWTKVMGAEPISEKESKEMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKE-LGVEI 159 (390)
T ss_pred CCcchhccCccccccccchhhhcccCCCCCCCcchhhHHhcCCcccCCCcccchHHHHHHHHHHHHHHHHHHHH-CCEEE
Confidence 99 89999999999999999999999999999999 999999999999999999999986 79999
Q ss_pred EEEEEeeeceecCCCCCCcccccHHh-hhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCcc-cc
Q 017617 205 LAYVSQAHNVVLPEDVVDHEMLTLDQ-VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV-FD 282 (368)
Q Consensus 205 ~s~v~~IG~i~~~~~~~~~~~~~~~~-i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~-fd 282 (368)
.|||++||+|+.+.. .+.+..++.+ +++|+++|||++++++|+++|++||++||||||+|||+|+|||+|||||+ ||
T Consensus 160 ~s~v~~IG~v~~~~~-~~~~~~~~~~~~~~s~~~c~d~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLGspv~fd 238 (390)
T PRK12463 160 AGHVLEIGGVKAKHI-SNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYD 238 (390)
T ss_pred EEEEEEECCEecCcc-cccCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCCCCcccc
Confidence 999999999975310 0111112333 88999999999999999999999999999999999999999999999999 98
Q ss_pred -chHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCcc
Q 017617 283 -KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 361 (368)
Q Consensus 283 -kLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI 361 (368)
|||++||+||||||||||||||+||++|.|+|||+||+|+++++++++|+|||+|||+|||||||||+||++|||||||
T Consensus 239 ~kLda~LA~A~msIpAVKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGI~GGISnG~pIv~r~a~KP~pSi 318 (390)
T PRK12463 239 RKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTL 318 (390)
T ss_pred ccchHHHHHHhcCcCceeEEEEccchhhhhCCCcccCceeEecCCCCeeecccCcccccccccCCCcEEEEEEECCcccc
Confidence 9999999999999999999999999999999999999999866667999999999999999999999999999999999
Q ss_pred ccccc
Q 017617 362 GVKNR 366 (368)
Q Consensus 362 ~~~q~ 366 (368)
++||+
T Consensus 319 ~~pq~ 323 (390)
T PRK12463 319 YKPLA 323 (390)
T ss_pred ccccc
Confidence 99997
No 8
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-95 Score=694.33 Aligned_cols=312 Identities=81% Similarity=1.258 Sum_probs=305.5
Q ss_pred ccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEE
Q 017617 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 134 (368)
Q Consensus 55 ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~ 134 (368)
|+||++||+||+||||-+.+|||+||||+|.+|++.|||.+|.||||||++++|||+|+|+|+|-||--.|+|+||||+|
T Consensus 2 SsFGtLFrVTTYGESHCKSVGCIVdGcPPGM~LTEsD~Q~QLTRRRPGQS~LtTPR~EKD~V~IQSGTEFG~TLGTPI~M 81 (368)
T KOG4492|consen 2 SSFGTLFRVTTYGESHCKSVGCIVDGCPPGMPLTESDLQFQLTRRRPGQSRLTTPRKEKDTVRIQSGTEFGMTLGTPIHM 81 (368)
T ss_pred CcccceEEEeeeccccCcccceEeccCCCCCCcchhhcceeeeccCCCccccCCCccccceEEEecCcccceecCCceEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeece
Q 017617 135 FVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNV 214 (368)
Q Consensus 135 ~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~i 214 (368)
+|.|+||+..||++|...|||+||||||..|||...-.||||+|||||+.|||+||||+|+|++.+|++|.+||+|||.|
T Consensus 82 ~v~N~DQrPHDYSDMD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvAfVsqvg~i 161 (368)
T KOG4492|consen 82 FVPNTDQRPHDYSDMDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHV 161 (368)
T ss_pred EccCCcCCCCchhhhccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEeEecccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcC
Q 017617 215 VLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294 (368)
Q Consensus 215 ~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almS 294 (368)
..+.+..+.+...++++++++++|||++.+++|.+.|++.+-++||+||++.|+++|.|-|||+|+||||++.||++|||
T Consensus 162 ~~p~~~~d~e~~T~E~~~~~~~rcpn~~~ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s 241 (368)
T KOG4492|consen 162 VLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMS 241 (368)
T ss_pred ecchhhcCcchhhhhhhcccceeCCCHHHHHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcC
Confidence 99876667777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 295 IpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
+|+-||+|||+||......|+++||+||.++.+..+++||++||++||||||+-|.++++|||+.||.+.|.
T Consensus 242 ~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ee~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~ 313 (368)
T KOG4492|consen 242 LPATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQN 313 (368)
T ss_pred CcchhhhhhhccceeeccccccccCcccccccccceeecccccccccccccceeeeeeccccccccccceee
Confidence 999999999999999999999999999998778899999999999999999999999999999999999886
No 9
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=98.89 E-value=2.7e-11 Score=117.58 Aligned_cols=138 Identities=7% Similarity=-0.213 Sum_probs=124.0
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeEEEecccc
Q 017617 228 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGF 307 (368)
Q Consensus 228 ~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEfG~GF 307 (368)
.++..+...+|+....+..|...+..++..-|+.++++.|+..+||-++++|.|+|+++.+|+++|++|+-|-.+.+.+|
T Consensus 191 ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ 270 (368)
T KOG4492|consen 191 AEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYT 270 (368)
T ss_pred HHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccceeeccccccccCcccc
Confidence 35566667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccceeecC-CCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 308 AGTFLTGSEHNDEFYTDE-FGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 308 ~~a~~~GSe~nD~~~~~~-~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
+ .+-+++.+||-++-.. .++....+|++++..+++|+|+...+-..+|-..+|.-.|.
T Consensus 271 e-e~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~gr 329 (368)
T KOG4492|consen 271 D-ENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGR 329 (368)
T ss_pred c-ccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccc
Confidence 9 8899999999987432 23456789999999999999999999999998888876654
No 10
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=83.88 E-value=2 Score=43.84 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=52.5
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCc--CCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEE
Q 017617 60 YFRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCK 117 (368)
Q Consensus 60 ~~r~ttfGESHG~~ig~VIdG~PaGl--~i~~edIq~~L~R--------------------RrpG~~~~~t~R~E~D~v~ 117 (368)
+.+..--|+|-|..+-|++.|||+|| ++. +.|+..|.. +.+|..--.....+.+++.
T Consensus 190 I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f-~klda~la~a~~sIpAvKgve~G~Gf~~a~~~GSe~nD~~~~~~~~~~ 268 (344)
T cd07304 190 IDEAKKEGDSVGGVVEVVATGVPAGLGSPVF-DKLDARLAQALMSIPAVKGVEIGSGFEAARMRGSEVNDEIYYDEGGIK 268 (344)
T ss_pred HHHHHHcCCCCceEEEEEEECCCCCCCcccc-ccchHHHHHHhcCcCceeEEEECcchhhhhccCcccCcceeeCCCcee
Confidence 34455679999999999999999998 333 555555433 3344322222233444444
Q ss_pred EE----ccccCCeecCCcEEEEEecC
Q 017617 118 IY----SGVSEGVTTGTPIHVFVPNT 139 (368)
Q Consensus 118 Il----SGv~~G~TtGtPIa~~I~N~ 139 (368)
.. .|+..|.|+|.||-+.+.=+
T Consensus 269 ~~TN~aGGI~GGISnG~pIv~rva~K 294 (344)
T cd07304 269 TKTNNAGGILGGISNGEPIVFRVAFK 294 (344)
T ss_pred ecccCccCccccccCCCcEEEEEEeC
Confidence 33 58999999999999988543
No 11
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=80.04 E-value=0.68 Score=47.19 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=47.2
Q ss_pred eEEeeeecccCCeeeEEeecCCCCc--CCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEE
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKI 118 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl--~i~~edIq~~L~R--------------------RrpG~~~~~t~R~E~D~v~I 118 (368)
.+..--|+|-|..+-|++.|||+|| ++ .|.|+..|.. +.+|.---.....+.+++..
T Consensus 189 ~~ak~~gDSlGG~ve~~~~gvP~GLG~p~-fdkLda~la~al~sIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~ 267 (346)
T PF01264_consen 189 DEAKKEGDSLGGIVEVVATGVPAGLGSPV-FDKLDARLAQALMSIPAVKGVEFGDGFEAASMRGSEVNDEIYYDDGKIKR 267 (346)
T ss_dssp HHHHHTTGGB-EEEEEEEES--TT-SBSS-CCSHHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS-SEEECTTTEEE
T ss_pred HHHHHhCCCCCeEEEEEEEecCCCCCCCC-cCcHHHHHHHHhhCCCCeeeEEecCcHHHhhcchhhcccceecccccccc
Confidence 3444569999999999999999998 45 5567666643 33443222222333334444
Q ss_pred E----ccccCCeecCCcEEEEEecC
Q 017617 119 Y----SGVSEGVTTGTPIHVFVPNT 139 (368)
Q Consensus 119 l----SGv~~G~TtGtPIa~~I~N~ 139 (368)
. .|+..|.|+|.||-+.+.=+
T Consensus 268 ~tN~aGGI~GGISnG~pIv~r~a~K 292 (346)
T PF01264_consen 268 KTNNAGGILGGISNGMPIVFRVAFK 292 (346)
T ss_dssp SS-TTTTEETTEEBSS-EEEEEEE-
T ss_pred cCCCcccccccccCCceEEEEEEec
Confidence 3 48899999999999988544
No 12
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=75.24 E-value=5.4 Score=41.11 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=74.1
Q ss_pred EEeeeecccCCeeeEEeecCCCCc--CCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEEE
Q 017617 62 RVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY 119 (368)
Q Consensus 62 r~ttfGESHG~~ig~VIdG~PaGl--~i~~edIq~~L~R--------------------RrpG~~~~~t~R~E~D~v~Il 119 (368)
++.=-|.|=|..|-||..|+|+|| ++ .+.++.+|++ +++|.....-...+. .+.+.
T Consensus 196 ~~k~~GDSiGgvvevva~gvP~GLG~pv-fdkLda~lA~AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~-~~~~~ 273 (369)
T COG0082 196 KAKKEGDSIGGVVEVVAEGVPAGLGEPV-FDKLDAKLAHALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG-GIVRK 273 (369)
T ss_pred HHHhcCCCcccEEEEEEeCCCCCCCCcc-cccchHHHHHHhhCCccceeEEeccchhhhhcccccccCceeeCC-CeeEc
Confidence 344568999999999999999998 44 5566666643 445543333333333 44444
Q ss_pred ----ccccCCeecCCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHH
Q 017617 120 ----SGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKI 195 (368)
Q Consensus 120 ----SGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~ 195 (368)
.|+..|.|+|.||-+-+.=+-..| -|...+..----|-......| |-.|.-=+=|++- .+-=+.|-.+|..+
T Consensus 274 tN~~GGilGGitnG~pIv~r~a~KPt~S-I~kp~~TVd~~t~e~~~~~~k-gRhDpcv~prAvp--V~EamvA~vLaD~~ 349 (369)
T COG0082 274 TNNAGGILGGITNGEPIVVRVAFKPTPS-IYKPQRTVDLETGEEVEASTK-GRHDPCVVPRAVP--VVEAMVALVLADHL 349 (369)
T ss_pred cccCCceeccccCCccEEEEEEeCCCCc-cCccccceEcccCCeeEEEec-CcCCCccccchhH--HHHHHHHHHHHHHH
Confidence 388999999999999886543322 111111111111112222222 4444433334432 22234566788888
Q ss_pred Hhhc
Q 017617 196 LKQF 199 (368)
Q Consensus 196 L~~~ 199 (368)
|+.+
T Consensus 350 L~~~ 353 (369)
T COG0082 350 LRKF 353 (369)
T ss_pred HHhh
Confidence 8763
No 13
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=73.59 E-value=2.6 Score=34.60 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.4
Q ss_pred hHHHHHHHhcCCCceeEEEecccccccccCC
Q 017617 284 LEAELAKAMMSLPATKGFEVGSGFAGTFLTG 314 (368)
Q Consensus 284 Lda~LA~almSIpAVKGvEfG~GF~~a~~~G 314 (368)
-++-||++||.|+.||+|-+|.-|=......
T Consensus 35 ~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~ 65 (87)
T PF08712_consen 35 SDSPLAQALFAIPGVKSVFIGDDFITVTKNP 65 (87)
T ss_dssp TS-HHHHHHHTSTTEEEEEEETTEEEEEE-T
T ss_pred ccCHHHHHhcCCCCEeEEEEECCEEEEeeCC
Confidence 3578999999999999999999886555433
No 14
>PRK05382 chorismate synthase; Validated
Probab=62.51 E-value=16 Score=37.69 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=47.3
Q ss_pred cCCccccEEEEEEeeCCCCCCCcc-ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCC
Q 017617 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (368)
Q Consensus 257 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (368)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..---+ .|. ...++ .-.|. +...
T Consensus 8 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~pG--------~~~---~~t~R--~E~D~--------v~il--- 61 (359)
T PRK05382 8 FGESHGPALGAVIDGCPAGLP--LTEEDIQKELDRRRPG--------YSR---GTTMR--IEPDE--------VEIL--- 61 (359)
T ss_pred EecCCCCeeEEEEcCCCCCCE--eCHHHHHHHHHccCCC--------CCC---CCCCC--CCCCc--------eEEe---
Confidence 488999999999999999985 4 46777777654321 000 01111 11232 3322
Q ss_pred cccccccccCCcceEEEEEE
Q 017617 336 SGGIQGGISNGEIINMRIAF 355 (368)
Q Consensus 336 aGGI~GGISnG~pIv~rva~ 355 (368)
.|+-.|.|+|.||.+.+-=
T Consensus 62 -SGv~~g~TtG~PI~~~I~N 80 (359)
T PRK05382 62 -SGVFEGKTTGTPIALLIRN 80 (359)
T ss_pred -ecccCCCcCCCCeEEEEEC
Confidence 5788899999999998854
No 15
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=61.93 E-value=20 Score=36.87 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=50.4
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCcCCCH-HHHHHHhhh--------------------hCCCCCCCCCCCCCCCeEEE
Q 017617 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSE-ADMQVDLDR--------------------RRPGQSRITTPRKETDTCKI 118 (368)
Q Consensus 60 ~~r~ttfGESHG~~ig~VIdG~PaGl~i~~-edIq~~L~R--------------------RrpG~~~~~t~R~E~D~v~I 118 (368)
+.+...-|.|-|..+-|++.|||+||=-.. +.|+..|.. +.+|.---.....+.+++..
T Consensus 189 I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~ 268 (351)
T TIGR00033 189 IDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKGVEIGDGFELASMRGSEANDEFVFEDGGIRR 268 (351)
T ss_pred HHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeEEEECcchhhccccccccccceEeCCCceEe
Confidence 344556799999999999999999996332 334444332 23342111111123444443
Q ss_pred E----ccccCCeecCCcEEEEEecC
Q 017617 119 Y----SGVSEGVTTGTPIHVFVPNT 139 (368)
Q Consensus 119 l----SGv~~G~TtGtPIa~~I~N~ 139 (368)
. .|+..|.|+|.||-+.+.=+
T Consensus 269 ~tN~~GGI~GGISnG~pIv~r~a~K 293 (351)
T TIGR00033 269 KTNNSGGILGGITNGEPIRVRIAFK 293 (351)
T ss_pred cCcCcccccccccCCCcEEEEEEeC
Confidence 3 58899999999999987543
No 16
>PRK12463 chorismate synthase; Reviewed
Probab=55.86 E-value=26 Score=36.58 Aligned_cols=71 Identities=24% Similarity=0.453 Sum_probs=47.0
Q ss_pred cCCccccEEEEEEeeCCCCCCCcc-ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCC
Q 017617 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (368)
Q Consensus 257 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (368)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..--.+ +|. ...+ ..-.|. +...
T Consensus 6 ~GESHG~~ig~VIdG~PaGl~--l~~e~I~~~L~RR~pG--------~~~---~~t~--r~E~D~--------v~il--- 59 (390)
T PRK12463 6 AGESHGPQLTVILEGVPAGLT--LAAEHINKELLRRQKG--------HGR---GRRM--QIETDT--------VEIV--- 59 (390)
T ss_pred cccCCCceeEEEEcCCCCCCc--cCHHHHHHHHhccCCC--------CCC---CCCC--CCCCCc--------eEEe---
Confidence 589999999999999999985 4 46677777654321 011 1111 111233 3222
Q ss_pred cccccccccCCcceEEEEE
Q 017617 336 SGGIQGGISNGEIINMRIA 354 (368)
Q Consensus 336 aGGI~GGISnG~pIv~rva 354 (368)
.|+-.|.|+|.||.+.+-
T Consensus 60 -SGv~~G~TtGtPI~~~I~ 77 (390)
T PRK12463 60 -SGVRHGMTLGSPITLIVK 77 (390)
T ss_pred -ecccCCCcCCCCeEEEEE
Confidence 688899999999999883
No 17
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=53.61 E-value=25 Score=37.92 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCcc---------------ccEEEEEEeeCCCCCCCccccchHHHHHHHhc--CCCceeEEEecccc
Q 017617 245 EKMIAAIDAVRVRGDSV---------------GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGF 307 (368)
Q Consensus 245 ~~m~~~I~~ak~~GDSl---------------GGvve~~v~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGvEfG~GF 307 (368)
+++.+++.++++.|..+ .|...+=|.|||+-.| -++.+|+.|+-.-| +|| |-=|-|+.||
T Consensus 452 ~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~--~~~g~~~l~s~~~~p~g~p-v~~v~i~~~~ 528 (577)
T PLN02948 452 ERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS--HLDGLDSLLSIVQMPRGVP-VATVAIGNAT 528 (577)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCC--CCCcHHHHHHHhcCCCCCe-EEEEecCChH
Confidence 45777888888887542 2333445678888776 57899999999999 999 8889888887
Q ss_pred cccc
Q 017617 308 AGTF 311 (368)
Q Consensus 308 ~~a~ 311 (368)
.+|.
T Consensus 529 ~aa~ 532 (577)
T PLN02948 529 NAGL 532 (577)
T ss_pred HHHH
Confidence 6553
No 18
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=48.21 E-value=53 Score=30.24 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=54.4
Q ss_pred HHHHHhhcCCeEEEEEEEeeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCcc----------
Q 017617 192 AKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSV---------- 261 (368)
Q Consensus 192 Ak~~L~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSl---------- 261 (368)
|.+.|++ |||...-.|.+.+.- -+++.++++++.++|..+
T Consensus 17 a~~~L~~-~gi~~dv~V~SaHRt-----------------------------p~~~~~~~~~a~~~g~~viIa~AG~aa~ 66 (156)
T TIGR01162 17 AADILEE-FGIPYELRVVSAHRT-----------------------------PELMLEYAKEAEERGIKVIIAGAGGAAH 66 (156)
T ss_pred HHHHHHH-cCCCeEEEEECcccC-----------------------------HHHHHHHHHHHHHCCCeEEEEeCCccch
Confidence 4577877 699966666554421 124566677777766431
Q ss_pred -----ccEEEEEEeeCCCCCCCccccchHHHHHHHhc--CCCceeEEEeccccccc
Q 017617 262 -----GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGT 310 (368)
Q Consensus 262 -----GGvve~~v~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGvEfG~GF~~a 310 (368)
.+...+=|.|||.-.+ .++.+|+.|+..-| ++| |-=|-|+.||.++
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~--~l~G~daLlS~vqmP~gvp-vatv~I~~~~nAa 119 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSK--ALSGLDSLLSIVQMPSGVP-VATVAIGNAGNAA 119 (156)
T ss_pred hHHHHHhccCCCEEEecCCcc--CCCCHHHHHHHhcCCCCCe-eEEEEcCChhHHH
Confidence 1222333556776544 37899999999887 566 7778888776544
No 19
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=27.31 E-value=62 Score=33.46 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 017617 189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268 (368)
Q Consensus 189 GaIAk~~L~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~ 268 (368)
..|.+++++. |+.|.+-|..-+++... .......+-+.+.||.-.+++..++..++|++|. .|+
T Consensus 280 ~~~~~~L~~~--g~~v~~g~l~~~d~d~~----~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~----------~vi 343 (402)
T PRK09536 280 ARAVSRLVAA--GASVSVGPVPEGDTAAE----TAARVGCEAVTVPPFKPIEDSTRAEATDLIIAAD----------AVV 343 (402)
T ss_pred HHHHHHHHHC--CCeEEEecCcCcchhHH----HHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCC----------EEE
Confidence 3466777764 99998888766654321 0111223346678888899999999999888875 477
Q ss_pred EeeCCCCCCCccccc
Q 017617 269 VRNCPRGLGSPVFDK 283 (368)
Q Consensus 269 v~gvP~GLG~p~fdk 283 (368)
+.++|.|-++++-..
T Consensus 344 ~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 344 AAGVAAAARSGVIGL 358 (402)
T ss_pred ECCCccCCCCCchhe
Confidence 889999999887544
No 20
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=27.20 E-value=54 Score=26.69 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=41.8
Q ss_pred ccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeEEEeccc
Q 017617 262 GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 306 (368)
Q Consensus 262 GGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEfG~G 306 (368)
|--.|..|+-+-+||-.+.|.++.++++.|+--.|.---|.||-|
T Consensus 17 gk~lelsvrtlnpglkkytyqrv~ae~s~aldkfpdqlqvr~grg 61 (84)
T TIGR02725 17 GKELELSVRTLNPGLKKYTYQRVKAELSNALDKFPDQLQVRFGRG 61 (84)
T ss_pred CceEEEEEeecCccHHHHHHHHHHHHhhhhhhhCcHhheeeeccC
Confidence 556799999999999999999999999999999999999999987
No 21
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=26.02 E-value=1.7e+02 Score=27.24 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=37.2
Q ss_pred eeeEEeecC-CCCcCCCHHHHHHHhhhhCCCC--CCCCCCCCCCCeEEEEccccCC
Q 017617 73 GVGCIIDGC-PPRIPLSEADMQVDLDRRRPGQ--SRITTPRKETDTCKIYSGVSEG 125 (368)
Q Consensus 73 ~ig~VIdG~-PaGl~i~~edIq~~L~RRrpG~--~~~~t~R~E~D~v~IlSGv~~G 125 (368)
++...|-+. +--.+|+.++++..|.+-.... -+....=.+.|.|+|++|.|.|
T Consensus 84 gV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~ 139 (178)
T COG0250 84 GVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAG 139 (178)
T ss_pred CcEEEeccCCCCCcccCHHHHHHHHhhccccccCCcccccCCCCCEEEEeccCCCC
Confidence 445555544 6678999999999666655431 1233445679999999999977
No 22
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=23.56 E-value=30 Score=17.92 Aligned_cols=9 Identities=67% Similarity=1.689 Sum_probs=6.8
Q ss_pred EEEeeCCCC
Q 017617 267 CIVRNCPRG 275 (368)
Q Consensus 267 ~~v~gvP~G 275 (368)
|.++|+|.|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 567888876
No 23
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=22.13 E-value=50 Score=35.87 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=23.6
Q ss_pred EEEEEecCCCCCCCccccccCCCCCccccccccc
Q 017617 132 IHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMK 165 (368)
Q Consensus 132 Ia~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~K 165 (368)
|+++-+|+-.+-++|. |.-.-=||||||-+..-
T Consensus 54 ITILaKnTav~~~~~~-INIvDTPGHADFGGEVE 86 (603)
T COG1217 54 ITILAKNTAVNYNGTR-INIVDTPGHADFGGEVE 86 (603)
T ss_pred cEEEeccceeecCCeE-EEEecCCCcCCccchhh
Confidence 7788899977655653 34455799999977543
No 24
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=21.83 E-value=79 Score=19.49 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=14.3
Q ss_pred CCCCeEEEEccccCCe
Q 017617 111 KETDTCKIYSGVSEGV 126 (368)
Q Consensus 111 ~E~D~v~IlSGv~~G~ 126 (368)
.+.|.|+|++|-+.|+
T Consensus 3 ~~G~~V~I~~G~~~g~ 18 (28)
T smart00739 3 EVGDTVRVIAGPFKGK 18 (28)
T ss_pred CCCCEEEEeECCCCCc
Confidence 4789999999999987
No 25
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=21.50 E-value=1.4e+02 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCcc---------ccEEEEEEeeCCCC
Q 017617 246 KMIAAIDAVRVRGDSV---------GGVVTCIVRNCPRG 275 (368)
Q Consensus 246 ~m~~~I~~ak~~GDSl---------GGvve~~v~gvP~G 275 (368)
+.++.-++|+++|.+. ..++.+.| |+|||
T Consensus 82 ~Ar~~Ye~A~~~G~~a~L~eq~~~~~~~F~~~V-NIppg 119 (130)
T smart00609 82 VAQKQYEKAVSQGKTAGLVRASGRSMEQFTVSV-NVAPG 119 (130)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCccCcEEEEE-EeCCC
Confidence 4566778888888763 38899999 99997
No 26
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=21.41 E-value=1.6e+02 Score=24.41 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeEEEe
Q 017617 243 YAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEV 303 (368)
Q Consensus 243 ~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEf 303 (368)
.++.+.+.|+.+|++++- -|--.+.|.|.-.|.| |-++|+.|+-.=-++=||.|
T Consensus 19 C~~~V~~qI~yvk~~~~~-~GpK~VLViGaStGyG------LAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 19 CARNVENQIEYVKSQGKI-NGPKKVLVIGASTGYG------LASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHHHHHHHHC----TS-SEEEEES-SSHHH------HHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEEecCCccc------HHHHHHHHhcCCCCEEEEee
Confidence 566678888888887776 6666789999999999 99999999844344445554
No 27
>PLN02754 chorismate synthase
Probab=21.08 E-value=65 Score=33.96 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=73.2
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCc--CCCHHHHHHHhhh--------------------hCCCCCCCCCCC-CCCCeE
Q 017617 60 YFRVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPR-KETDTC 116 (368)
Q Consensus 60 ~~r~ttfGESHG~~ig~VIdG~PaGl--~i~~edIq~~L~R--------------------RrpG~~~~~t~R-~E~D~v 116 (368)
+.+..--|+|-|..+-|++.|||+|| ++ .+.|+..|.. +.+|.---.-.. .|.+++
T Consensus 223 I~~ak~~GDSlGGivev~~~gvP~GLG~pv-fdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~ 301 (413)
T PLN02754 223 IDAVRVRGDSVGGVVTCIVRNVPRGLGSPV-FDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRI 301 (413)
T ss_pred HHHHHHcCCCcccEEEEEEECCCCCCCccc-cccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCce
Confidence 44556679999999999999999998 34 3556655543 233421111111 133445
Q ss_pred EEE----ccccCCeecCCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHH
Q 017617 117 KIY----SGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVA 192 (368)
Q Consensus 117 ~Il----SGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIA 192 (368)
... .|+..|.|+|.||-+.+.=+-.-|- +...+..-.-+. -+...-+|..|.-=+=|+ --.+-=++|=.||
T Consensus 302 ~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI-~k~q~TVd~~~~--e~~~~~~gRhDpCivprA--~pV~EAm~AlvLa 376 (413)
T PLN02754 302 RTRTNRSGGIQGGISNGEIIVMRIAFKPTSTI-GKKQNTVTRDGQ--ETELRARGRHDPCVVPRA--VPMVEAMVALVLV 376 (413)
T ss_pred EecccCCCcccccccCCCcEEEEEEeCCCccc-ccccccccCCCC--EeeeeccCCCCcccccch--hHHHHHHHHHHHH
Confidence 444 5889999999999998854432220 111111001011 011122455555433333 2233345666778
Q ss_pred HHHHhhc
Q 017617 193 KKILKQF 199 (368)
Q Consensus 193 k~~L~~~ 199 (368)
..+|+++
T Consensus 377 D~~L~~~ 383 (413)
T PLN02754 377 DQLMAQY 383 (413)
T ss_pred HHHHHHh
Confidence 8888774
No 28
>smart00463 SMR Small MutS-related domain.
Probab=20.60 E-value=2.6e+02 Score=21.67 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeEEEe
Q 017617 241 PEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEV 303 (368)
Q Consensus 241 ~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEf 303 (368)
.++.+.+...|+++++.+.. -.++|+ .|-|.+.. .-.+.|..++...+.+.++.|
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~--~~~~II-----~G~G~~s~-~g~~~i~~~l~~~l~~~~~~~ 66 (80)
T smart00463 12 EEALTALDKFLNNARLKGLE--QKLVII-----TGKGKHSL-GGKSGVKPALKEHLRVESFRF 66 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCC--ceEEEE-----EcccCCCc-cchhhHHHHHHhchhhccccc
Confidence 56788899999999999864 233333 45565433 247888899999998888877
Done!