Query 017617
Match_columns 368
No_of_seqs 189 out of 1046
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 17:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r53_A Chorismate synthase; tw 100.0 2E-135 8E-140 1004.5 22.7 313 54-366 1-321 (382)
2 1um0_A Chorismate synthase; be 100.0 5E-133 2E-137 980.8 29.1 300 54-366 1-306 (365)
3 1sq1_A Chorismate synthase; st 100.0 2E-133 6E-138 986.2 24.8 303 54-366 1-303 (370)
4 4ecd_A Chorismate synthase; 4- 100.0 3E-131 1E-135 979.9 24.6 308 59-366 3-329 (398)
5 1qxo_A Chorismate synthase; be 100.0 8E-130 3E-134 967.3 26.3 304 61-366 1-321 (388)
6 2o11_A Chorismate synthase; sh 100.0 3E-129 1E-133 966.6 25.4 305 60-366 1-325 (407)
7 1q1l_A Chorismate synthase; be 100.0 5E-128 2E-132 956.5 28.0 306 60-366 8-334 (401)
8 2k1h_A Uncharacterized protein 80.3 0.86 2.9E-05 37.1 2.4 28 285-312 38-65 (94)
9 1pqx_A Conserved hypothetical 79.1 0.79 2.7E-05 37.1 1.8 28 285-312 38-65 (91)
10 2ltm_A NFU1 iron-sulfur cluste 71.8 1 3.5E-05 37.6 0.0 29 284-312 47-75 (107)
11 1q1l_A Chorismate synthase; be 68.1 2.4 8.2E-05 42.7 2.5 78 63-140 220-325 (401)
12 2o11_A Chorismate synthase; sh 67.7 1.7 5.7E-05 43.9 1.3 132 63-199 212-370 (407)
13 2ltl_A NIFU-like protein, mito 62.4 2.1 7.3E-05 36.3 0.0 29 285-313 60-89 (119)
14 1sq1_A Chorismate synthase; st 57.4 9.9 0.00034 37.9 4.7 75 63-140 196-294 (370)
15 1o4v_A Phosphoribosylaminoimid 52.4 15 0.00051 33.3 4.6 62 246-310 56-134 (183)
16 3lp6_A Phosphoribosylaminoimid 32.6 56 0.0019 29.3 5.1 62 246-310 50-128 (174)
17 1qxo_A Chorismate synthase; be 29.9 21 0.00072 35.8 2.0 132 63-199 207-366 (388)
18 2zqe_A MUTS2 protein; alpha/be 27.3 2.1E+02 0.0072 21.9 7.3 55 240-305 14-68 (83)
19 4fn5_A EF-G 1, elongation fact 26.9 30 0.001 36.2 2.7 40 125-166 63-104 (709)
20 4ecd_A Chorismate synthase; 4- 24.6 36 0.0012 34.3 2.6 71 257-354 10-81 (398)
21 1r53_A Chorismate synthase; tw 23.9 41 0.0014 33.7 2.8 71 257-354 13-84 (382)
22 1um0_A Chorismate synthase; be 23.5 39 0.0013 33.6 2.5 72 257-355 13-85 (365)
23 2d16_A Hypothetical protein PH 23.4 78 0.0027 28.2 4.2 46 58-105 113-161 (162)
24 2ekm_A Hypothetical protein ST 23.1 80 0.0027 28.1 4.2 45 58-104 114-161 (162)
25 1zla_K Latent nuclear antigen; 22.8 23 0.00079 22.3 0.5 12 122-133 8-19 (26)
No 1
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=100.00 E-value=2.2e-135 Score=1004.54 Aligned_cols=313 Identities=54% Similarity=0.885 Sum_probs=233.6
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEE
Q 017617 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (368)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa 133 (368)
+||||++|||||||||||++||||||||||||+||+||||+||+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (382)
T 1r53_A 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (382)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeec
Q 017617 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (368)
Q Consensus 134 ~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (368)
++|+|+||+|+||+++++.||||||||||++|||++||||||||||||||+||||||||||||++.+||+|.|||++||+
T Consensus 81 ~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~ 160 (382)
T 1r53_A 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (382)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998669999999999999
Q ss_pred eecCCCCC------CcccccHHhhhcCC-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHH
Q 017617 214 VVLPEDVV------DHEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEA 286 (368)
Q Consensus 214 i~~~~~~~------~~~~~~~~~i~~~~-v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda 286 (368)
|+.+.... .....+++++++|+ |||||++++++|+++|+++|++||||||+|||+|+|||+|||||+||||||
T Consensus 161 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkLda 240 (382)
T 1r53_A 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (382)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccchH
Confidence 98742100 00244578899999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecccccccccCCCccccceeecCC-CceeecCCCcccccccccCCcceEEEEEEccCCcccccc
Q 017617 287 ELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKN 365 (368)
Q Consensus 287 ~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q 365 (368)
+||+||||||||||||||+||++++|+|||+||+|+.+++ ++++|+|||+|||+|||||||||+||+||||||||.+||
T Consensus 241 ~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q 320 (382)
T 1r53_A 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (382)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCcccccccc
Confidence 9999999999999999999999999999999999974321 579999999999999999999999999999999999999
Q ss_pred c
Q 017617 366 R 366 (368)
Q Consensus 366 ~ 366 (368)
+
T Consensus 321 ~ 321 (382)
T 1r53_A 321 K 321 (382)
T ss_dssp -
T ss_pred c
Confidence 6
No 2
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=100.00 E-value=4.8e-133 Score=980.78 Aligned_cols=300 Identities=41% Similarity=0.630 Sum_probs=291.3
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEE
Q 017617 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (368)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa 133 (368)
+||||++|||||||||||++||||||||||||+||++|||.||+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (365)
T 1um0_A 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeec
Q 017617 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (368)
Q Consensus 134 ~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (368)
++|+|+||+|+||+++++.||||||||||+.|||++||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 81 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAiAk~~L~~-~gI~i~~~v~~iG~ 159 (365)
T 1um0_A 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGIIEIGG 159 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEETT
T ss_pred EEEEcCCCCCCchhhccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 59999999999999
Q ss_pred eecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEee------CCCCCCCccccchHHH
Q 017617 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRN------CPRGLGSPVFDKLEAE 287 (368)
Q Consensus 214 i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~g------vP~GLG~p~fdkLda~ 287 (368)
|+.+ ..+++++++|+|||||++++++|+++|+++|++||||||+|||+++| ||+|||+|+||||||+
T Consensus 160 i~~~-------~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~gDSiGGvve~v~~g~~~~~~vP~GLG~pvfdkLda~ 232 (365)
T 1um0_A 160 IKAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAK 232 (365)
T ss_dssp EECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHH
T ss_pred EecC-------cCCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcccccCcCCCCCCCcccccchHH
Confidence 9864 24478899999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 288 LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
||+||||||||||||||+||++++|+|||+||+|+ + +| ++|||+|||+|||||||||+||+||||||||.+||+
T Consensus 233 LA~A~msI~AvKGvEiG~GF~~a~~~GSe~nD~~~-~-~g---~~tN~aGGi~GGISnG~pIv~r~a~KPt~SI~~~q~ 306 (365)
T 1um0_A 233 IAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMD-Q-KG---FLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQR 306 (365)
T ss_dssp HHHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEE-T-TE---ESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEE
T ss_pred HHHHhcCccceeeEEeccchhhhhcccccccchhc-c-CC---CcccCccCccccccCCCcEEEEEEECCCcccccccc
Confidence 99999999999999999999999999999999997 3 34 499999999999999999999999999999999996
No 3
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=100.00 E-value=1.7e-133 Score=986.21 Aligned_cols=303 Identities=41% Similarity=0.654 Sum_probs=234.9
Q ss_pred cccccCceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEE
Q 017617 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (368)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa 133 (368)
+||||++|||||||||||++||||||||||||+||+||||+||+||| ||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRr-G~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 79 (370)
T 1sq1_A 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIA 79 (370)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTT-C-----------CCEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHHhc-CCCCCCCCCCCCCeeEEeecccCCEeCCCCeE
Confidence 48999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEeeec
Q 017617 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (368)
Q Consensus 134 ~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~v~~IG~ 213 (368)
++|+|+||+|+||+++++.||||||||||++|||++||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 80 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~ 158 (370)
T 1sq1_A 80 IVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLRE-FDICVQSGVFGVGT 158 (370)
T ss_dssp EEEC----------------------------------------CCCTHHHHHHHHHHHHHHHHT-TTCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhhcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred eecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhc
Q 017617 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM 293 (368)
Q Consensus 214 i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~alm 293 (368)
|+.+. +....+++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+||||||+||+|||
T Consensus 159 i~~~~---~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~~k~~gDS~GGvve~v~~gvP~GLG~pvfdkLda~LA~Alm 235 (370)
T 1sq1_A 159 FVSNL---KEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALM 235 (370)
T ss_dssp EECCS---CGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHH
T ss_pred EecCC---CcCccCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcCCCCCCCcccccchHHHHHHhc
Confidence 98742 123456889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCccccccc
Q 017617 294 SLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGVKNR 366 (368)
Q Consensus 294 SIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~~q~ 366 (368)
|||||||||||+||++++|+|||+||+| + +|++ +|||+|||+|||||||||+||+||||||||.+||+
T Consensus 236 SI~AvKGvEiG~GF~~a~~~GSe~nD~~--~-~g~~--~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~ 303 (370)
T 1sq1_A 236 GINAVKAVEIGEGINASKMRGSCNNDAL--K-DGKF--LSNHSGGILGGISNGENLILKTYFKPTPSIFAKQE 303 (370)
T ss_dssp TSTTEEEEEETTGGGGGGSCHHHHCCCC--S-SSSC--SCCTTCSEETTEEBSSCEEEEEEECCCC-------
T ss_pred CccceeEEEeccchhhhhcccccccccc--c-CCcc--ccccCCCccccccCCCcEEEEEEecCCcccccccc
Confidence 9999999999999999999999999999 3 3544 99999999999999999999999999999999996
No 4
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=100.00 E-value=3e-131 Score=979.86 Aligned_cols=308 Identities=36% Similarity=0.511 Sum_probs=215.8
Q ss_pred CceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEec
Q 017617 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (368)
Q Consensus 59 ~~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N 138 (368)
++|||||||||||++||||||||||||+||+||||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|
T Consensus 3 ~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~l~I~N 82 (398)
T 4ecd_A 3 AMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVRLLTGVRHGLTLGSPVAIEIAN 82 (398)
T ss_dssp CCCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHTTCCCBCC------CCCEEEEESEETTEECSSCEEEEEEC
T ss_pred ceEEEEeeecCCCCeeEEEEccCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcccCCCcCCCCeEEEEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC---------CCcccc-------ccCCCCCccccccccccCCCcCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 017617 139 TDQRG---------HDYSEM-------SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (368)
Q Consensus 139 ~D~~s---------~DY~~~-------~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~G 201 (368)
+||+| +||+++ ++.||||||||||++|||++||||| |||||||||+||||||||||||++.+|
T Consensus 83 ~d~~~w~~~m~~~s~dy~~~~~~~~~~~~~pRPGHAD~t~~~KYG~~D~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 162 (398)
T 4ecd_A 83 TEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFG 162 (398)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCccchhhhccCCccChhhhhhhcccccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99986 599998 7899999999999999999999999 999999999999999999999998459
Q ss_pred eEEEEEEEeeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccc
Q 017617 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF 281 (368)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~f 281 (368)
|+|.|||++||+|+++....+....+++++++|+|||||++++++|+++|++||++||||||+|||+|+|||+|||||+|
T Consensus 163 I~i~s~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GLG~pvf 242 (398)
T 4ecd_A 163 IRTVAHVVALGGVQTNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVE 242 (398)
T ss_dssp CEEEEEEEEETTEECCSSSCCCCGGGHHHHHHSTTSCSCHHHHHHHHHHHHTC--CGGGCCEEEEEEEESCCSCCBCSSS
T ss_pred eEEEEEEEEEcCEEcccccCCCCHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCCCCCcc
Confidence 99999999999999753222334567889999999999999999999999999999999999999999999999999999
Q ss_pred --cchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCC
Q 017617 282 --DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (368)
Q Consensus 282 --dkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (368)
|||||+||+||||||||||||||+||++|+|+|||+||+|+++++|.++|+|||+|||+|||||||||+||+||||||
T Consensus 243 ~d~kLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 322 (398)
T 4ecd_A 243 SDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEGGMSNGQVIRVRGAMKPIP 322 (398)
T ss_dssp STTSHHHHHHHHHHTSTTEEEEEETTTTTC-------------------------CCCSEETTEECSSCEEEEEEECC--
T ss_pred cccChhHHHHHHhcCcCceeeEEecchHhhhhccccccccceeecCCCceeecccCCcCccccccCCCcEEEEEEecCcc
Confidence 999999999999999999999999999999999999999997654569999999999999999999999999999999
Q ss_pred ccccccc
Q 017617 360 TIGVKNR 366 (368)
Q Consensus 360 SI~~~q~ 366 (368)
||.+||+
T Consensus 323 SI~~~q~ 329 (398)
T 4ecd_A 323 SIPKALR 329 (398)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9999996
No 5
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=100.00 E-value=7.7e-130 Score=967.29 Aligned_cols=304 Identities=36% Similarity=0.486 Sum_probs=289.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecCC
Q 017617 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 61 ~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~D 140 (368)
|||||||||||++||||||||||||+||++|||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+|
T Consensus 1 fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N~d 80 (388)
T 1qxo_A 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CeEeecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCcCCCCCCeeEEeecccCCccCCCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------CCCcc-cc---ccCCCCCccccccccccCCCcCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 017617 141 QR---------GHDYS-EM---SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILA 206 (368)
Q Consensus 141 ~~---------s~DY~-~~---~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s 206 (368)
|+ |+||+ ++ ++.||||||||||++|||++||||| |||||||||+||||||||||||++ +||+|.|
T Consensus 81 ~~~w~~~ms~~s~dy~~~~~~~~~~~RPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a 159 (388)
T 1qxo_A 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAE-LDMEIAN 159 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred hhhhhhhcccCCccchhhhhcccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHh-CCcEEEE
Confidence 99 89999 55 6899999999999999999999999 999999999999999999999999 7999999
Q ss_pred EEEeeeceecCCCCCCccccc-HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccc--cc
Q 017617 207 YVSQAHNVVLPEDVVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DK 283 (368)
Q Consensus 207 ~v~~IG~i~~~~~~~~~~~~~-~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~f--dk 283 (368)
||++||+|+.+.. ......+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+| ||
T Consensus 160 ~v~~iG~i~~~~~-~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf~d~k 238 (388)
T 1qxo_A 160 HVVVFGGKEIDVP-ENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRK 238 (388)
T ss_dssp EEEEETTEECCCC-SSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGC
T ss_pred EEEEEeCEEcCcc-cccchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCcCCccccccc
Confidence 9999999997421 0011223 678999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCCcccc
Q 017617 284 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGV 363 (368)
Q Consensus 284 Lda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~~ 363 (368)
|||+||+||||||||||||||+||++++|+|||+||+|+++++++++|+|||+|||+|||||||||+||+||||||||.+
T Consensus 239 Lda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~ 318 (388)
T 1qxo_A 239 LDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYK 318 (388)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSS
T ss_pred chHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999876544699999999999999999999999999999999999
Q ss_pred ccc
Q 017617 364 KNR 366 (368)
Q Consensus 364 ~q~ 366 (368)
||+
T Consensus 319 ~q~ 321 (388)
T 1qxo_A 319 PLM 321 (388)
T ss_dssp CEE
T ss_pred ccc
Confidence 996
No 6
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=100.00 E-value=3.3e-129 Score=966.64 Aligned_cols=305 Identities=35% Similarity=0.514 Sum_probs=279.6
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecC
Q 017617 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (368)
Q Consensus 60 ~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~ 139 (368)
||||||||||||++||||||||||||+||++|||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+
T Consensus 1 mfr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGV~~G~TtGtPI~~~I~N~ 80 (407)
T 2o11_A 1 MLRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAIEIGNT 80 (407)
T ss_dssp CCEEEEECCTTSSEEEEEEESCCBTCBCCHHHHHHHHHHHTCCCC---------CCEEEEESEETTEECSSCEEEEEECT
T ss_pred CeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------CC---Ccc----ccc----cCCCCCccccccccccCCCcCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 017617 140 DQR------GH---DYS----EMS----VAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (368)
Q Consensus 140 D~~------s~---DY~----~~~----~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~G 201 (368)
||+ |+ ||+ +++ +.||||||||||++|||++||||| |||||||||+||||||||||||++.+|
T Consensus 81 D~~~w~~~ms~~~~dy~~~~~~~~~~~~~~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 160 (407)
T 2o11_A 81 EWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALG 160 (407)
T ss_dssp THHHHTTTTCSSCCCHHHHHTCGGGCCCCSCCTTSSHHHHHHHHTCSSSHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhhhhcccccccCcchhhhhhhhcccCCCCCCccchhhHhhcCCcccCCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999 55 899 555 799999999999999999999999 999999999999999999999988459
Q ss_pred eEEEEEEEeeeceecCCCCCCcccccHHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCcc-
Q 017617 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV- 280 (368)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~- 280 (368)
|+|.|||++||+|+++.... ....+++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+
T Consensus 161 I~i~a~v~~iG~i~~~~~~~-~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv~ 239 (407)
T 2o11_A 161 VEVLSHVISIGASAPYEGPP-PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTS 239 (407)
T ss_dssp CEEEEEEEEETTCCCCCSCC-CCGGGHHHHHHSTTCCSSHHHHHHHHHHHHHHHHHTCCCCEEEEEEEESCCTTCSCSSS
T ss_pred cEEEEEEEEEeCEEcccccc-cchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCCCcc
Confidence 99999999999998642100 1234578899999999999999999999999999999999999999999999999999
Q ss_pred -ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccCC
Q 017617 281 -FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (368)
Q Consensus 281 -fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (368)
||||||+||+||||||||||||||+||++++|+|||+||+|+++++| ++|+|||+|||+|||||||||+||+||||||
T Consensus 240 ~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g-~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 318 (407)
T 2o11_A 240 GDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNRAGGLEGGMTNGQPLRVRAAMKPIS 318 (407)
T ss_dssp GGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTS-CBCSCCTTTTEETTEECSSCEEEEEEECCCS
T ss_pred cccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCC-ceecCcCccCcccccCCCCcEEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999875444 9999999999999999999999999999999
Q ss_pred ccccccc
Q 017617 360 TIGVKNR 366 (368)
Q Consensus 360 SI~~~q~ 366 (368)
||.+||+
T Consensus 319 SI~~~q~ 325 (407)
T 2o11_A 319 TVPRALA 325 (407)
T ss_dssp CCTTTCE
T ss_pred ccccccc
Confidence 9999996
No 7
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=100.00 E-value=5.5e-128 Score=956.51 Aligned_cols=306 Identities=38% Similarity=0.565 Sum_probs=258.8
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCcCCCHHHHHHHhhhhCCCCCCCCCCCCCCCeEEEEccccCCeecCCcEEEEEecC
Q 017617 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (368)
Q Consensus 60 ~~r~ttfGESHG~~ig~VIdG~PaGl~i~~edIq~~L~RRrpG~~~~~t~R~E~D~v~IlSGv~~G~TtGtPIa~~I~N~ 139 (368)
+|||||||||||++||||||||||||+||++|||+||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+
T Consensus 8 ~fr~tT~GESHG~alg~vIdG~PaGl~l~~edIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N~ 87 (401)
T 1q1l_A 8 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFIRNR 87 (401)
T ss_dssp SCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEEECS
T ss_pred eEEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----------ccccccCCCCCccccccccccCCCcCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 017617 140 DQRGHD-----------YSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAY 207 (368)
Q Consensus 140 D~~s~D-----------Y~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~~L~~~~GI~I~s~ 207 (368)
||.+|. |+...+.||||||||||++|||++||||| |||||||||+||||||||||||++ +||+|.||
T Consensus 88 Dy~~~~~~m~~~~~~~~~~~~~t~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~ 166 (401)
T 1q1l_A 88 DWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSE-FGIKIGSF 166 (401)
T ss_dssp CC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CHHHHHhhccccccccccccccCCCCCCCcchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHH-CCeEEEEE
Confidence 655421 11122349999999999999999999999 999999999999999999999999 79999999
Q ss_pred EEeeeceecCCC------CCCccccc-HHhhhcCCCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCc-
Q 017617 208 VSQAHNVVLPED------VVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSP- 279 (368)
Q Consensus 208 v~~IG~i~~~~~------~~~~~~~~-~~~i~~~~v~c~d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p- 279 (368)
|++||+|+.+.. +.+....+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|
T Consensus 167 v~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv 246 (401)
T 1q1l_A 167 VVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHI 246 (401)
T ss_dssp EEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSCSS
T ss_pred EEEEcCEEcccccccccccCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcc
Confidence 999999986310 00001233 6789999999999999999999999999999999999999999999999999
Q ss_pred cccc-hHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCCcccccccccCCcceEEEEEEccC
Q 017617 280 VFDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPT 358 (368)
Q Consensus 280 ~fdk-Lda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPt 358 (368)
+||| |||+||+||||||||||||||+||++++++|||+||+|+++++++++|+|||+|||+|||||||||+||+|||||
T Consensus 247 ~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~TN~aGGI~GGISnG~pIv~r~a~KPt 326 (401)
T 1q1l_A 247 QWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMKPI 326 (401)
T ss_dssp SGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCC
T ss_pred cccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCC
Confidence 7998 999999999999999999999999999999999999998765446999999999999999999999999999999
Q ss_pred Cccccccc
Q 017617 359 STIGVKNR 366 (368)
Q Consensus 359 pSI~~~q~ 366 (368)
|||.+||+
T Consensus 327 ~SI~~~q~ 334 (401)
T 1q1l_A 327 PTLKNPLR 334 (401)
T ss_dssp CC------
T ss_pred cccccccc
Confidence 99999996
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=80.29 E-value=0.86 Score=37.14 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCceeEEEeccccccccc
Q 017617 285 EAELAKAMMSLPATKGFEVGSGFAGTFL 312 (368)
Q Consensus 285 da~LA~almSIpAVKGvEfG~GF~~a~~ 312 (368)
.+-||+.||.||.||+|-||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 38 QPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp SCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4679999999999999999988765544
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=79.09 E-value=0.79 Score=37.14 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCceeEEEeccccccccc
Q 017617 285 EAELAKAMMSLPATKGFEVGSGFAGTFL 312 (368)
Q Consensus 285 da~LA~almSIpAVKGvEfG~GF~~a~~ 312 (368)
.+-||+.||.||.||+|-||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (91)
T 1pqx_A 38 QPAFINDILKVEGVKSIFHVMDFISVDK 65 (91)
T ss_dssp CCHHHHHHHHSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4779999999999999999998866555
No 10
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=71.85 E-value=1 Score=37.62 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred hHHHHHHHhcCCCceeEEEeccccccccc
Q 017617 284 LEAELAKAMMSLPATKGFEVGSGFAGTFL 312 (368)
Q Consensus 284 Lda~LA~almSIpAVKGvEfG~GF~~a~~ 312 (368)
..+-||+.||.||.||+|-||.-|=....
T Consensus 47 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 75 (107)
T 2ltm_A 47 FRSPLARQLFRIEGVKSVFFGPDSITVTK 75 (107)
Confidence 34779999999999999999998866644
No 11
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=68.05 E-value=2.4 Score=42.70 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=50.2
Q ss_pred EeeeecccCCeeeEEeecCCCCcCC--CHHH-HHHHhhh--------------------hCCCCCCCCCCCCCCC-eEEE
Q 017617 63 VTTFGESHGGGVGCIIDGCPPRIPL--SEAD-MQVDLDR--------------------RRPGQSRITTPRKETD-TCKI 118 (368)
Q Consensus 63 ~ttfGESHG~~ig~VIdG~PaGl~i--~~ed-Iq~~L~R--------------------RrpG~~~~~t~R~E~D-~v~I 118 (368)
..--|.|-|..|-||+.|||+||== ..|. |+.+|.. +++|.---.-...+.+ .+.-
T Consensus 220 ak~~GDS~GGvvevv~~gvP~GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~ 299 (401)
T 1q1l_A 220 VKEKGESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFR 299 (401)
T ss_dssp HHTTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEE
T ss_pred HHHhCCCCceEEEEEEecCCCCCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeee
Confidence 3446999999999999999999953 4666 7777654 3444211001000111 2211
Q ss_pred ----EccccCCeecCCcEEEEEecCC
Q 017617 119 ----YSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 119 ----lSGv~~G~TtGtPIa~~I~N~D 140 (368)
-.|+..|.|+|.||-+-+.=+-
T Consensus 300 ~TN~aGGI~GGISnG~pIv~r~a~KP 325 (401)
T 1q1l_A 300 HSNNLGGTEGGITNGMPIVVRVAMKP 325 (401)
T ss_dssp SCCTTTTEETTEECSSCEEEEEEECC
T ss_pred cCcCccCcccccCCCCcEEEEEEeCC
Confidence 2478899999999999885443
No 12
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=67.75 E-value=1.7 Score=43.91 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=69.5
Q ss_pred EeeeecccCCeeeEEeecCCCCcCCCH---HHHHHHhhh--------------------hCCCCCCCCCCCCCCCeE---
Q 017617 63 VTTFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDR--------------------RRPGQSRITTPRKETDTC--- 116 (368)
Q Consensus 63 ~ttfGESHG~~ig~VIdG~PaGl~i~~---edIq~~L~R--------------------RrpG~~~~~t~R~E~D~v--- 116 (368)
..--|.|-|..|-||+.|||+||==-. +.|+.+|.. +++|.---.-...+.+.+
T Consensus 212 ak~~GDS~GGvvevv~~gvP~GLG~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~ 291 (407)
T 2o11_A 212 AKKDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS 291 (407)
T ss_dssp HHHHTCCCCEEEEEEEESCCTTCSCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTSCBCS
T ss_pred HHhcCCCCceEEEEEEecCCCCCCCCcccccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCCceec
Confidence 344699999999999999999996543 567776653 333311000000011111
Q ss_pred -EEEccccCCeecCCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHHH
Q 017617 117 -KIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKI 195 (368)
Q Consensus 117 -~IlSGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~~ 195 (368)
.--.|+..|.|+|.||-+-+.=+-.-| -|...+..-.-++... ..-+|-.|.-=+=|++ -.+-=++|=.||..+
T Consensus 292 TN~aGGI~GGISnG~pIv~r~a~KPt~S-I~~~q~TVd~~~~e~~--~~~~gRhDpCvvprA~--pV~EAm~AlvLaD~~ 366 (407)
T 2o11_A 292 TNRAGGLEGGMTNGQPLRVRAAMKPIST-VPRALATVDLATGDEA--VAIHQRSDVCAVPAAG--VVVETMVALVLARAA 366 (407)
T ss_dssp CCTTTTEETTEECSSCEEEEEEECCCSC-CTTTCEEECTTTCCEE--ECCCSCCCSCCHHHHH--HHHHHHHHHHHHHHH
T ss_pred CcCccCcccccCCCCcEEEEEEeCCCcc-ccccccceecCCCeee--eecCCCCCceeecchH--HHHHHHHHHHHHHHH
Confidence 113688999999999999885443322 1111111112222222 1224555554222321 122233455667777
Q ss_pred Hhhc
Q 017617 196 LKQF 199 (368)
Q Consensus 196 L~~~ 199 (368)
|+++
T Consensus 367 L~~~ 370 (407)
T 2o11_A 367 LEKF 370 (407)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7663
No 13
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=62.41 E-value=2.1 Score=36.29 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHhc-CCCceeEEEecccccccccC
Q 017617 285 EAELAKAMM-SLPATKGFEVGSGFAGTFLT 313 (368)
Q Consensus 285 da~LA~alm-SIpAVKGvEfG~GF~~a~~~ 313 (368)
.+-||++|| .|+.||+|-||.-|=.....
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~ 89 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINKD 89 (119)
Confidence 466999999 99999999999988766553
No 14
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=57.45 E-value=9.9 Score=37.91 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=47.0
Q ss_pred EeeeecccCCeeeEEeecCCCCc--CCCHHHHHHHhhh--------------------hCCCCCCCCCCCCCCC--eEEE
Q 017617 63 VTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETD--TCKI 118 (368)
Q Consensus 63 ~ttfGESHG~~ig~VIdG~PaGl--~i~~edIq~~L~R--------------------RrpG~~~~~t~R~E~D--~v~I 118 (368)
..--|.|=|..|-||+.|||+|| ++ .+.|+.+|+. +++|.---.-. +.. +-.-
T Consensus 196 ~k~~gDS~GGvve~v~~gvP~GLG~pv-fdkLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~--~~g~~~tN~ 272 (370)
T 1sq1_A 196 ARNSKDSVGAAVFTKVSGMLIGLGEVL-YDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDAL--KDGKFLSNH 272 (370)
T ss_dssp HHHTTCCCCEEEEEEEESCCBSCSBTT-TBCHHHHHHHHHHTSTTEEEEEETTGGGGGGSCHHHHCCCC--SSSSCSCCT
T ss_pred HHHhCCCCeEEEEEEEEcCCCCCCCcc-cccchHHHHHHhcCccceeEEEeccchhhhhcccccccccc--cCCcccccc
Confidence 34459999999999999999999 44 3555555543 23331100000 001 1111
Q ss_pred EccccCCeecCCcEEEEEecCC
Q 017617 119 YSGVSEGVTTGTPIHVFVPNTD 140 (368)
Q Consensus 119 lSGv~~G~TtGtPIa~~I~N~D 140 (368)
-.|+..|.|+|.||-+-+.=+-
T Consensus 273 aGGI~GGISnG~pIv~r~a~KP 294 (370)
T 1sq1_A 273 SGGILGGISNGENLILKTYFKP 294 (370)
T ss_dssp TCSEETTEEBSSCEEEEEEECC
T ss_pred CCCccccccCCCcEEEEEEecC
Confidence 2688999999999999885443
No 15
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=52.38 E-value=15 Score=33.35 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCcc---------------ccEEEEEEeeCCCCCCCccccchHHHHHHHhc--CCCceeEEEeccccc
Q 017617 246 KMIAAIDAVRVRGDSV---------------GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFA 308 (368)
Q Consensus 246 ~m~~~I~~ak~~GDSl---------------GGvve~~v~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGvEfG~GF~ 308 (368)
+|.++++++.++|-.+ .|...+=|.|||.-.| -++.+|+.|+-.=| ++| |-=|-|+.||.
T Consensus 56 ~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~--~l~G~dsLlSivqmP~Gvp-VatV~Id~~~n 132 (183)
T 1o4v_A 56 RMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTS--TLNGLDSLFSIVQMPGGVP-VATVAINNAKN 132 (183)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCT--TTTTHHHHHHHHTCCTTCC-CEECCTTCHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccCCCEEEeeCCCC--CCCcHHHHHHHhcCCCCCe-eEEEecCCchH
Confidence 4666777776666542 0111112345665544 48899999999999 888 77787877765
Q ss_pred cc
Q 017617 309 GT 310 (368)
Q Consensus 309 ~a 310 (368)
++
T Consensus 133 Aa 134 (183)
T 1o4v_A 133 AG 134 (183)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=32.59 E-value=56 Score=29.33 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCcc---------------ccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCc--eeEEEeccccc
Q 017617 246 KMIAAIDAVRVRGDSV---------------GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA--TKGFEVGSGFA 308 (368)
Q Consensus 246 ~m~~~I~~ak~~GDSl---------------GGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpA--VKGvEfG~GF~ 308 (368)
+|.+++.++.++|-.+ .|...+=|.|||.-.|. ++.+|+.|+..-|- ++ |-=|-|+.||.
T Consensus 50 ~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~--l~G~daLlS~vqmp-~GvpVatV~I~~~~n 126 (174)
T 3lp6_A 50 AMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGR--LDGLDSLLSIVQMP-AGVPVATVSIGGAGN 126 (174)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCSS--GGGHHHHHHHHCCC-TTCCCEECCTTCHHH
T ss_pred HHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccCCCEEEeeCCCCC--CCCHHHHHHHhhCC-CCCeeEEEEcCcchH
Confidence 5777888888877541 11112224566665552 78999999988774 33 44466666665
Q ss_pred cc
Q 017617 309 GT 310 (368)
Q Consensus 309 ~a 310 (368)
++
T Consensus 127 Aa 128 (174)
T 3lp6_A 127 AG 128 (174)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 17
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=29.89 E-value=21 Score=35.77 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=69.1
Q ss_pred EeeeecccCCeeeEEeecCCCCcCCC--H-HHHHHHhhh--------------------hCCCCCCCCCCCCCCC-eEEE
Q 017617 63 VTTFGESHGGGVGCIIDGCPPRIPLS--E-ADMQVDLDR--------------------RRPGQSRITTPRKETD-TCKI 118 (368)
Q Consensus 63 ~ttfGESHG~~ig~VIdG~PaGl~i~--~-edIq~~L~R--------------------RrpG~~~~~t~R~E~D-~v~I 118 (368)
..--|.|-|..|-||+.|||+||==- . +.|+.+|.. +++|.---.-...+.+ .+.-
T Consensus 207 ak~~GDS~GGvvevv~~gvP~GLG~pvf~d~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~ 286 (388)
T 1qxo_A 207 IKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTR 286 (388)
T ss_dssp HHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEE
T ss_pred HHHhCCCCceEEEEEEecCCCCcCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeee
Confidence 33459999999999999999998443 2 347666653 3444211001010111 2322
Q ss_pred ----EccccCCeecCCcEEEEEecCCCCCCCccccccCCCCCccccccccccCCCcCCCCchhhHHHHHHHHHHHHHHHH
Q 017617 119 ----YSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKK 194 (368)
Q Consensus 119 ----lSGv~~G~TtGtPIa~~I~N~D~~s~DY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~ 194 (368)
-.|+..|.|+|.||-+-+.=+-.-| -|...+..-.-++.... .-+|-.|.-=+=|++ -.+-=++|=.||..
T Consensus 287 ~tN~aGGI~GGISnG~pIv~r~a~KPt~S-I~~~q~TVd~~~~e~~~--~~~gRhDpCvvprA~--pV~EAm~AlvlaD~ 361 (388)
T 1qxo_A 287 RTNNLGGFEGGMTNGQPIVVRGVMKPIPT-LYKPLMSVDIETHEPYK--ATVERSDPTALPAAG--MVMEAVVATVLAQE 361 (388)
T ss_dssp SCCTTTTEETTEECSSCEEEEEEECCCSC-CSSCEEEECTTTCCEEE--ECCSSCCSCCHHHHH--HHHHHHHHHHHHHH
T ss_pred cCcCccCcccccCCCCcEEEEEEeCCCcc-ccccccceecCCCEeee--ecCCCCCcccccchH--HHHHHHHHHHHHHH
Confidence 2478899999999999886543332 11112221122322222 224555554222321 12223345566777
Q ss_pred HHhhc
Q 017617 195 ILKQF 199 (368)
Q Consensus 195 ~L~~~ 199 (368)
+|+++
T Consensus 362 ~L~~~ 366 (388)
T 1qxo_A 362 ILEKF 366 (388)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77663
No 18
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=27.32 E-value=2.1e+02 Score=21.91 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHcCCccccEEEEEEeeCCCCCCCccccchHHHHHHHhcCCCceeEEEecc
Q 017617 240 DPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGS 305 (368)
Q Consensus 240 d~~~~~~m~~~I~~ak~~GDSlGGvve~~v~gvP~GLG~p~fdkLda~LA~almSIpAVKGvEfG~ 305 (368)
-+|+.+++.+.|++|..+|-+ .|. ++ -|-|+ ..|...+-+.|-..|.|+.+..+.
T Consensus 14 ~~eA~~~l~~fl~~a~~~g~~---~v~-II----HGkG~---GvLr~~V~~~L~~~~~V~~f~~a~ 68 (83)
T 2zqe_A 14 VAEALLEVDQALEEARALGLS---TLR-LL----HGKGT---GALRQAIREALRRDKRVESFADAP 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS---EEE-EE----CCSTT---SHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEE-EE----ECCCc---hHHHHHHHHHHhcCCceeEEEEcC
Confidence 467888999999999999976 233 33 45554 378888888888899999999864
No 19
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=26.86 E-value=30 Score=36.21 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=25.9
Q ss_pred Ceec-CCcEEEEEecCCCCCCCcc-ccccCCCCCcccccccccc
Q 017617 125 GVTT-GTPIHVFVPNTDQRGHDYS-EMSVAYRPSHADATYDMKY 166 (368)
Q Consensus 125 G~Tt-GtPIa~~I~N~D~~s~DY~-~~~~~pRPGHAD~t~~~KY 166 (368)
|.|. -+++++.-++++.+..+|. ||.| =|||+||++...-
T Consensus 63 GITI~s~~~s~~~~~~~~~~~~~~iNlID--TPGHvDF~~Ev~~ 104 (709)
T 4fn5_A 63 GITITSAAVTTFWKGSRGQYDNYRVNVID--TPGHVDFTIEVER 104 (709)
T ss_dssp -----CCEEEEEECCTTSCSCCEEEEEEC--CCSCTTCHHHHHH
T ss_pred CCeEEeeeEEEEeccCcCCCCCEEEEEEe--CCCCcccHHHHHH
Confidence 5554 3688888888877766774 4445 4799999976643
No 20
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=24.64 E-value=36 Score=34.25 Aligned_cols=71 Identities=23% Similarity=0.431 Sum_probs=45.0
Q ss_pred cCCccccEEEEEEeeCCCCCCCcc-ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCC
Q 017617 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (368)
Q Consensus 257 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (368)
-|+|-|-.+-|++.|||+||= + .+.|+..|..-- +|.-----... +.+.+..
T Consensus 10 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~eL~RRr--------------------pG~~r~~t~R~-E~D~v~I---- 62 (398)
T 4ecd_A 10 AGESHGEALVAMIEGLPAGVR--ISTDDIVSALARRR--------------------LGYGRGARMKF-EQDKVRL---- 62 (398)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHTT--------------------CCCBCC-------CCCEEE----
T ss_pred eecCCCCeeEEEEccCCCCCc--cCHHHHHHHHHhcC--------------------CCCCCCCCCCC-CCCceEE----
Confidence 489999999999999999985 4 356666666532 22100000011 1122332
Q ss_pred cccccccccCCcceEEEEE
Q 017617 336 SGGIQGGISNGEIINMRIA 354 (368)
Q Consensus 336 aGGI~GGISnG~pIv~rva 354 (368)
..|+.-|.|+|.||-+.+.
T Consensus 63 lSGv~~G~TtGtPI~l~I~ 81 (398)
T 4ecd_A 63 LTGVRHGLTLGSPVAIEIA 81 (398)
T ss_dssp EESEETTEECSSCEEEEEE
T ss_pred EEcccCCCcCCCCeEEEEE
Confidence 2688899999999999873
No 21
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=23.94 E-value=41 Score=33.68 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=44.3
Q ss_pred cCCccccEEEEEEeeCCCCCCCcc-ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCC
Q 017617 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (368)
Q Consensus 257 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (368)
-|+|-|-.+-|++.|||+||= + .+.|+..|..---+ .+ ..+.++ .-.|+. ...
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRrpG----------~~-r~~t~R--~E~D~v--------~Il--- 66 (382)
T 1r53_A 13 YGESHCKSVGCIVDGVPPGMS--LTEADIQPQLTRRRPG----------QS-KLSTPR--DEKDRV--------EIQ--- 66 (382)
T ss_dssp ECCTTSSEEEEEEECCCTTCB--CCGGGTHHHHHTTCC-------------------------CCC--------EEC---
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCCC----------CC-CCCCCC--CCCCee--------EEe---
Confidence 489999999999999999985 4 46677777653221 11 001110 012332 222
Q ss_pred cccccccccCCcceEEEEE
Q 017617 336 SGGIQGGISNGEIINMRIA 354 (368)
Q Consensus 336 aGGI~GGISnG~pIv~rva 354 (368)
.|+.-|.|+|.||-+-+-
T Consensus 67 -SGv~~G~TtGtPI~~~I~ 84 (382)
T 1r53_A 67 -SGTEFGKTLGTPIAMMIK 84 (382)
T ss_dssp -SSEETTEECSSCEEEEEE
T ss_pred -ecccCCccCCCCeEEEEe
Confidence 578889999999998664
No 22
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=23.48 E-value=39 Score=33.65 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=46.3
Q ss_pred cCCccccEEEEEEeeCCCCCCCcc-ccchHHHHHHHhcCCCceeEEEecccccccccCCCccccceeecCCCceeecCCC
Q 017617 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (368)
Q Consensus 257 ~GDSlGGvve~~v~gvP~GLG~p~-fdkLda~LA~almSIpAVKGvEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (368)
-|+|-|-.+-|++.|||+||= + .+-|+..|..---+- + ..+.++ .-.|+. ...
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRrpG~----------~-r~~t~R--~E~D~v--------~Il--- 66 (365)
T 1um0_A 13 FGESHGDVIGGVLDGMPSGIK--IDYALLENEMKRRQGGR----------N-VFITPR--KEDDKV--------EIT--- 66 (365)
T ss_dssp CCSCCSSEEEEEEECCCBTCB--CCHHHHHHHHHHHTTCC----------S-SCCCHH--HHSCEE--------EEC---
T ss_pred eccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCCCC----------C-CCCCCC--CCCCee--------EEe---
Confidence 489999999999999999985 4 456777776643211 1 001110 012333 222
Q ss_pred cccccccccCCcceEEEEEE
Q 017617 336 SGGIQGGISNGEIINMRIAF 355 (368)
Q Consensus 336 aGGI~GGISnG~pIv~rva~ 355 (368)
.|+.-|.|+|.||-+-+.=
T Consensus 67 -SGv~~G~TtGtPI~~~I~N 85 (365)
T 1um0_A 67 -SGVFEDFSTGTPIGFLIHN 85 (365)
T ss_dssp -SSEETTEECSSCEEEEEEC
T ss_pred -ecccCCccCCCCeEEEEEc
Confidence 5788899999999987653
No 23
>2d16_A Hypothetical protein PH1918; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=23.38 E-value=78 Score=28.15 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=32.2
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CcCCCHHHHH--HHhhhhCCCCCC
Q 017617 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ--VDLDRRRPGQSR 105 (368)
Q Consensus 58 G~~~r~ttfGESHG~~ig~VIdG~Pa-Gl~i~~edIq--~~L~RRrpG~~~ 105 (368)
-+-+.+.++=-..|.+|-+||||.+| |++= ++|++ ++|=|+ =||.+
T Consensus 113 ANPl~VIVaet~~GrgvlGVvDG~~p~GVE~-e~d~~~Rk~lLr~-iGYK~ 161 (162)
T 2d16_A 113 ENPFQVIVAETELGRAVIGVVDGKAANKIET-DEQKKERRELVEK-IGYKI 161 (162)
T ss_dssp SSSEEEEEEECSSCEEEEEEEESSCCCSCCC-HHHHHHHHHHHHH-HTCCC
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCccC-HHHHHHHHHHHHH-hCcCC
Confidence 45688999888899999999999865 6664 45544 244333 37743
No 24
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=23.10 E-value=80 Score=28.08 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=31.8
Q ss_pred cCceEEeeeecccCCeeeEEeecCCC-CcCCCHHHHH--HHhhhhCCCCC
Q 017617 58 GTYFRVTTFGESHGGGVGCIIDGCPP-RIPLSEADMQ--VDLDRRRPGQS 104 (368)
Q Consensus 58 G~~~r~ttfGESHG~~ig~VIdG~Pa-Gl~i~~edIq--~~L~RRrpG~~ 104 (368)
-+-+.+.++=-..|.+|-+||||.+| |++= ++|++ ++|=|+ =||.
T Consensus 114 ANPl~VIvaet~~GrgvlGVvDG~~p~GVE~-e~d~~~Rk~lLr~-iGYK 161 (162)
T 2ekm_A 114 ANPLQVLVAETDQGRGVIGVVDGYTPLGIET-EADIKERKELLRK-FGYK 161 (162)
T ss_dssp SSCEEEEEEECSSCEEEEEEEESCCCCEECC-HHHHHHHHHHHHH-TTSC
T ss_pred CCCEEEEEEEcCCCcEEEEEecCCCCCCccC-HHHHHHHHHHHHH-hCCC
Confidence 45689999888899999999999865 6664 55554 244333 3763
No 25
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=22.83 E-value=23 Score=22.26 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.7
Q ss_pred ccCCeecCCcEE
Q 017617 122 VSEGVTTGTPIH 133 (368)
Q Consensus 122 v~~G~TtGtPIa 133 (368)
++.|++||+|++
T Consensus 8 lrsgrstgaplt 19 (26)
T 1zla_K 8 LRSGRSTGAPLT 19 (26)
T ss_pred eecCcccCCccc
Confidence 467899999985
Done!