RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017617
(368 letters)
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 371
Score = 335 bits (859), Expect = e-114
Identities = 171/315 (54%), Positives = 217/315 (68%), Gaps = 8/315 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RRRPGQS+++TPR E D
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KYG+++ GG
Sbjct: 62 RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM------LTL 228
GR+SARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E +T
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181
Query: 229 DQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAE 287
++V+S +RCPD A M+ I+ R DS+GGVVTC+VRN P GLG P FDKLEA
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241
Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNG 346
LA AM+S+PA+KGFE+GSGF G + GS+HND FY ++ +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301
Query: 347 EIINMRIAFKPTSTI 361
E I + FK +TI
Sbjct: 302 ENIYFSVPFKSVATI 316
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 316 bits (811), Expect = e-106
Identities = 115/323 (35%), Positives = 165/323 (51%), Gaps = 22/323 (6%)
Query: 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIY 119
Y R T GESHG G+ I++G P +PLSE ++ +L RR+ G R + E DT +I
Sbjct: 4 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEIL 63
Query: 120 SGVSEGVTTGTPIHVFVPNTDQRGHDY-----------SEMSVAYRPSHADATYDMKYGV 168
SGV G T G+PI +F+ N D RP HAD + +KY
Sbjct: 64 SGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQ 123
Query: 169 RSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE-------DV 220
R ++ R+SARET RVA GAV KK L +F G +I ++V + E
Sbjct: 124 RDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKDKSYFAN 182
Query: 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV 280
+ + ++ E + +R P PE E+ ID V+ +G+S+GGV N P GLGS +
Sbjct: 183 PEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHI 242
Query: 281 F--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGG 338
+++ +A+AMMS+ A KG E+G GF GS+ +DE E +N GG
Sbjct: 243 QWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGG 302
Query: 339 IQGGISNGEIINMRIAFKPTSTI 361
+GGI+NG I +R+A KP T+
Sbjct: 303 TEGGITNGMPIVVRVAMKPIPTL 325
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
pylori [TaxId: 210]}
Length = 365
Score = 307 bits (788), Expect = e-103
Identities = 120/313 (38%), Positives = 167/313 (53%), Gaps = 19/313 (6%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR+ G++ TPRKE D
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SGV E +TGTPI + N R DY + +RPSHAD TY KYG+R +GG
Sbjct: 62 KVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE+ RVA GA AK +L++ + + + +
Sbjct: 122 GRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI--------KAKNYDFNHALKS 173
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDKLEAEL 288
+ D E E AI DS+GGV R+ P GLG ++ KL+A++
Sbjct: 174 EIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKI 233
Query: 289 AKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348
A+AMM L K E+G G + L GSE+ND F +NRSGG+ GG+SNGE
Sbjct: 234 AEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQKGF-----LSNRSGGVLGGMSNGEE 288
Query: 349 INMRIAFKPTSTI 361
I +R+ FKPT +I
Sbjct: 289 IIVRVHFKPTPSI 301
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 306 bits (784), Expect = e-103
Identities = 124/307 (40%), Positives = 171/307 (55%), Gaps = 10/307 (3%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R+ G S+ TPRKE+D
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGG-SKFATPRKESD 60
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
++ SGV EG TTG PI + V N + DY + +RP+HAD TY KYG+R +GG
Sbjct: 61 KAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGG 120
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE++ RVA GAVA +L++F V + E + + +
Sbjct: 121 GRSSARESVARVAGGAVAAMLLREFDICVQSGVFG----VGTFVSNLKEEEFDFEFAKKS 176
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294
+ C DP+ I R DSVG V V GLG ++DKL+++LA A+M
Sbjct: 177 EIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMG 236
Query: 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIA 354
+ A K E+G G + + GS +ND +F +N SGGI GGISNGE + ++
Sbjct: 237 INAVKAVEIGEGINASKMRGSCNNDALKDGKF-----LSNHSGGILGGISNGENLILKTY 291
Query: 355 FKPTSTI 361
FKPT +I
Sbjct: 292 FKPTPSI 298
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 306 bits (785), Expect = e-103
Identities = 109/316 (34%), Positives = 152/316 (48%), Gaps = 17/316 (5%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
R T GESHG + II+G P +PL+ D+ DL RR+ G R + E D SG
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSG 61
Query: 122 VSEGVTTGTPIHVFVPNTDQRGHDYSEMS-------------VAYRPSHADATYDMKYGV 168
V G TTG PI + V N D + + RP HAD +KY
Sbjct: 62 VRHGKTTGAPITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRF 121
Query: 169 RSVQ-GGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLT 227
++ RSSARET RVA GAVAK++L + EI +V +
Sbjct: 122 DDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANHVVVFGGKEIDVPENLTVAEI 180
Query: 228 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DKLE 285
+ + V + E +++ ID ++ GD++GGVV +V P GLGS V KL+
Sbjct: 181 KQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240
Query: 286 AELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISN 345
A LA+A++S+ A KG E G GF + GS+ DE + RTN GG +GG++N
Sbjct: 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTN 300
Query: 346 GEIINMRIAFKPTSTI 361
G+ I +R KP T+
Sbjct: 301 GQPIVVRGVMKPIPTL 316
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 29.9 bits (66), Expect = 0.45
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 287 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 340
L KA+ A E + E D G++ R N S G +
Sbjct: 4 SLLKALSEADAIASSEQEVRQILLEEA--ARLQKEVRFDGLGSVLIRLNESTGPK 56
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 27.7 bits (60), Expect = 2.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 208 VSQAHNVVLPEDVVDHEMLTLDQVESNI 235
+ + +V P D+V+ E++ D V+ N+
Sbjct: 285 LERHIDVFAPNDIVNEELINNDHVDDNL 312
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.5 bits (59), Expect = 2.5
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 249 AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 308
A A+ GD C P+ D + +L K L
Sbjct: 17 EARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKF---LGCDVARVTNGARE 73
Query: 309 GTFLT 313
F
Sbjct: 74 AKFAV 78
>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Thermotoga maritima [TaxId: 2336]}
Length = 284
Score = 27.2 bits (59), Expect = 3.6
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 186 VAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAE 245
P V ++ +K+ + L ++ ++ ++ TLD+ +S DPE +
Sbjct: 229 AIPKTVRRERMKENI---------SIFDFELTQEDME-KIATLDEGQSAFFSHRDPEVVK 278
Query: 246 KM 247
+
Sbjct: 279 WI 280
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 26.3 bits (57), Expect = 7.0
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 16/78 (20%)
Query: 217 PEDVVDHEMLTLDQVES-----NIVRCPDPEYAEKMIAAIDAVRVRGDSVG---GVVTCI 268
P DVV D +E D E A K +D ++ + G G+ I
Sbjct: 22 PSDVVKD---IYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGI 78
Query: 269 -----VRNCPRGLGSPVF 281
S +
Sbjct: 79 KDNIITNGLETTCASKML 96
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
5724]}
Length = 362
Score = 25.9 bits (56), Expect = 8.1
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 100 RPGQSRITTPRKETDT----CKIYSGVSEGVTTGTPI 132
PG S + + K G + P+
Sbjct: 17 IPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPL 53
>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048,
catalytic domain {Thermotoga maritima [TaxId: 2336]}
Length = 248
Score = 25.7 bits (55), Expect = 8.3
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 287 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNI 329
+L + +L G+E + + + DE T G++
Sbjct: 5 KLLMELSNLDGPSGYETNVVSYIKSVI--EPFVDEAKTTRHGSL 46
>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC,
catalytic domain {Bacillus subtilis [TaxId: 1423]}
Length = 275
Score = 25.6 bits (55), Expect = 8.9
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 287 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNI 329
+ K + G E +++ DE TD G++
Sbjct: 7 TMLKDLTDAKGIPGNEREVRQVMKSYIE--PFADEVTTDRLGSL 48
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 25.8 bits (56), Expect = 9.1
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 311 FLTGSEHNDEFYTDE--FGNIRTRTNRSGGIQG 341
T + D FYTD I+ R +Q
Sbjct: 272 LETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQA 304
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,352,793
Number of extensions: 63712
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 17
Length of query: 368
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 281
Effective length of database: 1,213,086
Effective search space: 340877166
Effective search space used: 340877166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.6 bits)