Query 017619
Match_columns 368
No_of_seqs 195 out of 708
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 3.6E-62 7.7E-67 478.9 13.1 270 55-339 136-409 (549)
2 COG4299 Uncharacterized protei 100.0 1.3E-43 2.7E-48 338.0 16.2 213 59-344 4-220 (371)
3 PF07786 DUF1624: Protein of u 99.8 2.2E-18 4.7E-23 159.6 17.1 113 62-186 1-118 (223)
4 COG3503 Predicted membrane pro 99.4 9.1E-13 2E-17 128.4 12.1 120 61-192 14-138 (323)
5 COG2311 Predicted membrane pro 99.3 9.7E-12 2.1E-16 125.7 12.3 120 58-197 8-143 (394)
6 PRK10835 hypothetical protein; 98.7 1.2E-07 2.7E-12 95.4 12.1 103 66-194 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 97.5 0.00022 4.9E-09 71.9 7.6 78 62-143 1-81 (358)
8 PRK03854 opgC glucans biosynth 97.2 0.0022 4.7E-08 64.1 9.8 90 57-147 3-101 (375)
9 COG4645 Uncharacterized protei 97.0 0.002 4.4E-08 64.8 7.1 85 59-147 20-110 (410)
10 PF01757 Acyl_transf_3: Acyltr 96.8 0.0049 1.1E-07 56.5 8.1 53 64-117 2-61 (340)
11 COG3274 Predicted O-acyltransf 92.5 0.79 1.7E-05 46.2 9.4 56 60-115 2-64 (332)
12 COG1835 Predicted acyltransfer 87.5 0.33 7.2E-06 48.7 2.1 67 56-128 8-76 (386)
13 COG3594 NolL Fucose 4-O-acetyl 79.1 2.8 6.1E-05 42.6 4.6 50 60-115 2-54 (343)
14 COG3619 Predicted membrane pro 46.9 49 0.0011 31.9 6.0 58 90-149 48-105 (226)
15 PF08507 COPI_assoc: COPI asso 37.7 2.7E+02 0.0059 24.1 8.9 51 98-148 29-82 (136)
16 PF11654 DUF2665: Protein of u 36.3 49 0.0011 24.5 3.2 32 105-136 8-41 (47)
17 PF05857 TraX: TraX protein; 32.4 4.1E+02 0.0089 24.6 13.4 50 65-118 2-51 (219)
18 PF07760 DUF1616: Protein of u 28.3 5.7E+02 0.012 25.0 12.9 78 103-193 29-110 (287)
19 PF02038 ATP1G1_PLM_MAT8: ATP1 23.2 68 0.0015 24.1 2.1 30 92-121 8-37 (50)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-62 Score=478.85 Aligned_cols=270 Identities=43% Similarity=0.753 Sum_probs=231.2
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHhccCcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 017619 55 LLQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKII 134 (368)
Q Consensus 55 ~~~~~~~Rl~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kil 134 (368)
..+...+|+.|+|+|||+|+++||+||+.|+.||+++|++|||++++|+|||+|+||||+|+++|+|+..+|.+..+|.-
T Consensus 136 sla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~rKa~ 215 (549)
T KOG4683|consen 136 SLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATRKAK 215 (549)
T ss_pred hcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhHHHH
Confidence 34445689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHH
Q 017619 135 FRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (368)
Q Consensus 135 rRsl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl~Yli~all~l~~~~~~~~~~~~~~~~i~~~~~~qw~ 214 (368)
.|+.+|+++|++++++|.+.++++++++|.+++|++|||||+|++|+++|++..+..+..... ..||-+
T Consensus 216 ~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~~-----------~S~~R~ 284 (549)
T KOG4683|consen 216 ARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISPQ-----------RSWQRA 284 (549)
T ss_pred HHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCccc-----------cchhhh
Confidence 999999999999999999999999999999999999999999999999999998887642211 123445
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcc---ccCCCCcceeeeecccCCCCCc-cccHhhhhhhhhccccccCCCCcccccccc
Q 017619 215 GGFIAFVIYIITTYSLYVPNWSFS---EHSDHGVKKYIVKCGMRGHLGP-ACNAVGYVDRELWGINHLYSDPVWSRLEAC 290 (368)
Q Consensus 215 ~~~~lL~~y~~l~~~l~VP~~~~~---~~~~~~~~~~~~~~g~~g~l~~-~~N~ag~IDR~vlG~~HlY~~Ptw~~~~~c 290 (368)
+....+..|.+..++-+||+|.+- ...|+.++.+.+.||.++...+ .||++||.||+++|++|||++|+|+|.+.|
T Consensus 285 V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~c 364 (549)
T KOG4683|consen 285 VHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDC 364 (549)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCccchhhhHHhhhhhHHHhcCchHHHhhhc
Confidence 555555555555555555554322 1223345555556777777764 599999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCCccchhchhHHHHHHHHHHHHHhhhh
Q 017619 291 TLSSPNSGPLREDAPSWCRAPFEPEGLLSYSLWYNWYSLWTCFDSFQGS 339 (368)
Q Consensus 291 ~~~~~~~g~~~~~~~~w~~~~fDPEGLLstL~ai~~y~~~~~~~~~~~~ 339 (368)
+.++|+.|+++.|+|+||++||||||+||+|.|++. .+.|...|.
T Consensus 365 s~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~----~llG~h~Gh 409 (549)
T KOG4683|consen 365 SINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQ----VLLGAHAGH 409 (549)
T ss_pred ccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHH----HHHHhhcCe
Confidence 999999999999999999999999999999999977 778887773
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.3e-43 Score=337.95 Aligned_cols=213 Identities=31% Similarity=0.454 Sum_probs=185.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhccCc---ccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 017619 59 KSKRVATLDAFRGLTVVLMILVDDAGG---AYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (368)
Q Consensus 59 ~~~Rl~SLD~lRGltm~lMIlVN~~g~---~~~~l~Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilr 135 (368)
+.-|+.|+|++||+|+++||+||+.+- .|+++.|++|.|+|++|+|||+|+|++|.+|+||.++....+...+++.|
T Consensus 4 pa~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~R 83 (371)
T COG4299 4 PAFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYR 83 (371)
T ss_pred chhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHH
Confidence 347999999999999999999999873 78999999999999999999999999999999999988777778899999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccc-CccceehhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccchhhhhhhHHHHH
Q 017619 136 RTLKLLFWGIILQGGYSHAPDALSYGVD-MKHIRWCGILQRIALVYVVVALIETLTTKRRPNVLEPRHLSIFTAYQWQWI 214 (368)
Q Consensus 136 Rsl~LfllGl~l~~~~~~~~~~l~~~~~-~~~~r~~GVLqrIgl~Yli~all~l~~~~~~~~~~~~~~~~i~~~~~~qw~ 214 (368)
|+..+|++|++++. |... . .|.++ .+.+|.+||||||++||+++|+....+++ ++||+
T Consensus 84 Raa~~f~Lg~Lm~~-F~~~-~--~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~~ 142 (371)
T COG4299 84 RAAERFALGYLMGA-FVTV-R--DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQAL 142 (371)
T ss_pred HHHHHHHHHHHhhh-cccc-c--eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHHH
Confidence 99999999999975 3221 1 12344 56799999999999999999998876654 48999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCccccCCCCcceeeeecccCCCCCccccHhhhhhhhhccccccCCCCcccccccccCCC
Q 017619 215 GGFIAFVIYIITTYSLYVPNWSFSEHSDHGVKKYIVKCGMRGHLGPACNAVGYVDRELWGINHLYSDPVWSRLEACTLSS 294 (368)
Q Consensus 215 ~~~~lL~~y~~l~~~l~VP~~~~~~~~~~~~~~~~~~~g~~g~l~~~~N~ag~IDR~vlG~~HlY~~Ptw~~~~~c~~~~ 294 (368)
.+.+++++||++++..++|+.| ++..+|...++|+...+.||+|+.
T Consensus 143 laavLL~gYwl~lm~~p~P~~~---------------------l~~~Gn~g~~~d~l~i~~~hLy~~------------- 188 (371)
T COG4299 143 LAAVLLAGYWLFLMFTPHPAAP---------------------LGGIGNVGESADPLQILNDHLYSA------------- 188 (371)
T ss_pred HHHHHHHHHHHHHhhcCCCccc---------------------cccccccccccchhhhhhhhhhcc-------------
Confidence 9999999999999888888643 344568899999999999999984
Q ss_pred CCCCCCCCCCCCcCCCCCCCccchhchhHHHHHHHHHHHHHhhhhHHHHh
Q 017619 295 PNSGPLREDAPSWCRAPFEPEGLLSYSLWYNWYSLWTCFDSFQGSLCEAQ 344 (368)
Q Consensus 295 ~~~g~~~~~~~~w~~~~fDPEGLLstL~ai~~y~~~~~~~~~~~~~~~~~ 344 (368)
...||||||+||+|+.+. .+.|.++++.++.+
T Consensus 189 --------------dG~~dpeGLlstvPttv~----VLaGylaar~l~~~ 220 (371)
T COG4299 189 --------------DGGFDPEGLLSTVPTTVL----VLAGYLAARPLQQK 220 (371)
T ss_pred --------------cCCCCchhhhhcchHHHH----HHHHHHhhhHHhhC
Confidence 146899999999999988 89999999999876
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.80 E-value=2.2e-18 Score=159.59 Aligned_cols=113 Identities=29% Similarity=0.430 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCc-ccc-ccc-cc--CCCchhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 017619 62 RVATLDAFRGLTVVLMILVDDAGG-AYA-RID-HS--PWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFR 136 (368)
Q Consensus 62 Rl~SLD~lRGltm~lMIlVN~~g~-~~~-~l~-Ha--~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrR 136 (368)
|+.+||++||+||++|+++|.... .++ ..+ |. .+....+.|+++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999999764 111 111 22 234567889999999999999999999887766 788999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHH
Q 017619 137 TLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALI 186 (368)
Q Consensus 137 sl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl~Yli~all 186 (368)
++.|+++|++++... +....+...++||||.||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHH
Confidence 999999999987531 112234566889999999999998877
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.43 E-value=9.1e-13 Score=128.38 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhccCc--ccccccccCC-Cc--hhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q 017619 61 KRVATLDAFRGLTVVLMILVDDAGG--AYARIDHSPW-NG--CTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIF 135 (368)
Q Consensus 61 ~Rl~SLD~lRGltm~lMIlVN~~g~--~~~~l~Ha~W-nG--~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilr 135 (368)
+|+.+||++||++|++|++.|...+ .+.+++-+.= .| ..++..+.|.|+|++|+|..++-.|+.++ .++.+|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 8999999999999999999997654 2233332211 22 36789999999999999999999887663 788999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhc
Q 017619 136 RTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTK 192 (368)
Q Consensus 136 Rsl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl~Yli~all~l~~~~ 192 (368)
|.++|..+++.+++. +|..-++++.+.|||+.||++.++.+.+. ++++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP~ 138 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLPR 138 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCch
Confidence 999999999999763 22222467899999999999999877654 4443
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=9.7e-12 Score=125.75 Aligned_cols=120 Identities=29% Similarity=0.486 Sum_probs=94.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhccCccccc----ccccCC-Cch-----hhHHH-----HHHHHHHHHHHHHHHHhhc
Q 017619 58 QKSKRVATLDAFRGLTVVLMILVDDAGGAYAR----IDHSPW-NGC-----TLADF-----VMPFFLFIVGVAIALALKK 122 (368)
Q Consensus 58 ~~~~Rl~SLD~lRGltm~lMIlVN~~g~~~~~----l~Ha~W-nG~-----t~aDl-----VfP~FlFivGvSi~ls~~r 122 (368)
..++|+.++|++||++++++++||.....+|- .-|..| .+. -+.|+ +.|.|.|++|+++....+|
T Consensus 8 ~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~~~~r 87 (394)
T COG2311 8 AQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAMMLRR 87 (394)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Confidence 45699999999999999999999988765541 113332 221 22233 8899999999999999999
Q ss_pred cCChhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017619 123 VPKING-AVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRRPNV 197 (368)
Q Consensus 123 ~~~k~~-~~~kilrRsl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl~Yli~all~l~~~~~~~~~ 197 (368)
..+|++ .....+||...|+++|++|... . |. ++|-+.|.+++++.+++.++++|.
T Consensus 88 ~~~~g~~~~~~~~RR~~~Lll~G~iH~~f-i----------------W~---GDIL~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 88 AARKGRRWVALYARRLLLLLLLGLIHALF-I----------------WD---GDILLAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHccCccHHHHHHHHHHHHHHHHHHHHH-H----------------hc---chHHHHHHHHHHHHHHHHhccccH
Confidence 887775 5666799999999999999652 2 34 899999999999999999988763
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=95.45 Aligned_cols=103 Identities=22% Similarity=0.283 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhccCccccc-------ccc--cCCCch--hhH-----HHHHHHHHHHHHHHHHHHhhccCChhHH
Q 017619 66 LDAFRGLTVVLMILVDDAGGAYAR-------IDH--SPWNGC--TLA-----DFVMPFFLFIVGVAIALALKKVPKINGA 129 (368)
Q Consensus 66 LD~lRGltm~lMIlVN~~g~~~~~-------l~H--a~WnG~--t~a-----DlVfP~FlFivGvSi~ls~~r~~~k~~~ 129 (368)
+|++||++++++++||......|. ..+ +.+|.. .+. .-.+|.|.+++|+++.+..+|..+
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999965332221 111 111221 122 237899999999999999875221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHHHHHHHHHHHHHhhcCC
Q 017619 130 VKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIALVYVVVALIETLTTKRR 194 (368)
Q Consensus 130 ~~kilrRsl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl~Yli~all~l~~~~~~ 194 (368)
...||.+.|+++|++|... .|. ++|-..|.+++++.+.+.+++
T Consensus 77 --~~~rRl~~Ll~~GliH~~l-----------------lw~---GDIL~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLL-----------------FWD---GDILLAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHH-----------------Hcc---chHHHHHHHHHHHHHHHHhcc
Confidence 3669999999999999642 123 788899999999998887764
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.53 E-value=0.00022 Score=71.91 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCChh---HHHHHHHHHHH
Q 017619 62 RVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN---GAVKKIIFRTL 138 (368)
Q Consensus 62 Rl~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~---~~~~kilrRsl 138 (368)
|...||.+||++++.|..-|.+++.+ ++-.+..+++.| -.-.|+|+.|++..+.+.|+..|. ...+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~---~~~T~~~~Gfsd-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVL---EWFTLRNFGFSD-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHH---HHhccccccCCC-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 67789999999996655544444433 333333333433 234799999999999998765443 46788999987
Q ss_pred HHHHH
Q 017619 139 KLLFW 143 (368)
Q Consensus 139 ~Lfll 143 (368)
.|-.-
T Consensus 77 ~lY~a 81 (358)
T PF10129_consen 77 QLYVA 81 (358)
T ss_pred HHHHH
Confidence 66543
No 8
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=97.17 E-value=0.0022 Score=64.07 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=59.5
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHhccCc--ccccc----cccCCCch--hhHH-HHHHHHHHHHHHHHHHHhhccCChh
Q 017619 57 QQKSKRVATLDAFRGLTVVLMILVDDAGG--AYARI----DHSPWNGC--TLAD-FVMPFFLFIVGVAIALALKKVPKIN 127 (368)
Q Consensus 57 ~~~~~Rl~SLD~lRGltm~lMIlVN~~g~--~~~~l----~Ha~WnG~--t~aD-lVfP~FlFivGvSi~ls~~r~~~k~ 127 (368)
+++++|...+|.+||+++++.++.|.... ..++. +.+.|-.. ...+ ..+|+|.|+.|+....+.+|+ +.+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHH
Confidence 44568999999999999999999887421 11111 11122111 1111 458999999999988886554 345
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017619 128 GAVKKIIFRTLKLLFWGIIL 147 (368)
Q Consensus 128 ~~~~kilrRsl~LfllGl~l 147 (368)
+..++=++|.+.-++++.++
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 66777778877777777554
No 9
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.002 Score=64.77 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=57.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhccCcccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCChh-H--HHHHHHH
Q 017619 59 KSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKIN-G--AVKKIIF 135 (368)
Q Consensus 59 ~~~Rl~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~-~--~~~kilr 135 (368)
+.+|...||++||++++.|.+-|-++..+..++|-+. .+.|- .=.|+||.|+++..++.|+.-++ + ...|+.+
T Consensus 20 ~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~lkiWr 95 (410)
T COG4645 20 PMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGTLKIWR 95 (410)
T ss_pred ccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHHHHHHH
Confidence 4589999999999999877553434433223444332 33321 23599999999999998876443 2 3558999
Q ss_pred HHHHHHH---HHHHH
Q 017619 136 RTLKLLF---WGIIL 147 (368)
Q Consensus 136 Rsl~Lfl---lGl~l 147 (368)
|+..|.. .|.++
T Consensus 96 RA~~LY~~himtl~i 110 (410)
T COG4645 96 RAMVLYVAHIMTLVI 110 (410)
T ss_pred HHHHHHHHHHHHHHH
Confidence 9998876 55554
No 10
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=96.82 E-value=0.0049 Score=56.51 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCcccccccccCCCch-------hhHHHHHHHHHHHHHHHHH
Q 017619 64 ATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGC-------TLADFVMPFFLFIVGVAIA 117 (368)
Q Consensus 64 ~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG~-------t~aDlVfP~FlFivGvSi~ 117 (368)
.++|.+||++++++++.|........ ....+... .......|+|.++.|..+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPP-PFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccc-ccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 57999999999999998876532110 00111110 5677899999999999998
No 11
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=92.54 E-value=0.79 Score=46.17 Aligned_cols=56 Identities=16% Similarity=0.386 Sum_probs=41.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccCc-cccc-cccc-CC---Cch-hhHHHHHHHHHHHHHHH
Q 017619 60 SKRVATLDAFRGLTVVLMILVDDAGG-AYAR-IDHS-PW---NGC-TLADFVMPFFLFIVGVA 115 (368)
Q Consensus 60 ~~Rl~SLD~lRGltm~lMIlVN~~g~-~~~~-l~Ha-~W---nG~-t~aDlVfP~FlFivGvS 115 (368)
.+|+.+||.+|+++++..+.+|.... .+.. ..|. .| |+. ++.-.+-|+|..+.|.-
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL 64 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL 64 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999988654 2222 2232 14 555 66678999999999975
No 12
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=87.52 E-value=0.33 Score=48.73 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=43.9
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHhccCcccccccccCC--CchhhHHHHHHHHHHHHHHHHHHHhhccCChhH
Q 017619 56 LQQKSKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPW--NGCTLADFVMPFFLFIVGVAIALALKKVPKING 128 (368)
Q Consensus 56 ~~~~~~Rl~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~W--nG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~ 128 (368)
....++|+.+||.+||++.++.++.|......+ .+..+ +|..-.| +|..++|.-|.-++.++..+++
T Consensus 8 ~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~--~~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 8 INSSGGRLPGLDGLRAIAALLVVLYHAGFQIGP--GPGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHccccccC--CCCcccccccccee----EeeeccHHHHHHHHHHHhhcCC
Confidence 344468999999999999998888886543211 01111 2222233 6888999999998876554443
No 13
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=79.08 E-value=2.8 Score=42.64 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=37.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccCcccccccccCCCc---hhhHHHHHHHHHHHHHHH
Q 017619 60 SKRVATLDAFRGLTVVLMILVDDAGGAYARIDHSPWNG---CTLADFVMPFFLFIVGVA 115 (368)
Q Consensus 60 ~~Rl~SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG---~t~aDlVfP~FlFivGvS 115 (368)
++|-.++|+.||+-+++.++-|..+...| |.- .-+.-+-+|+|.||.|.-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 58999999999999999999887653221 322 134456799999999975
No 14
>COG3619 Predicted membrane protein [Function unknown]
Probab=46.95 E-value=49 Score=31.89 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=42.9
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHhh
Q 017619 90 IDHSPWNGCTLADFVMPFFLFIVGVAIALALKKVPKINGAVKKIIFRTLKLLFWGIILQG 149 (368)
Q Consensus 90 l~Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~r~~~k~~~~~kilrRsl~LfllGl~l~~ 149 (368)
.+-+++|.....+...|.+.|++|+.+.-.++|+..| ...-.+.+...|+.+++....
T Consensus 48 i~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~ 105 (226)
T COG3619 48 IELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLAL 105 (226)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHH
Confidence 4456677788899999999999999999888876655 233345566666776766644
No 15
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=37.69 E-value=2.7e+02 Score=24.09 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccC---ChhHHHHHHHHHHHHHHHHHHHHh
Q 017619 98 CTLADFVMPFFLFIVGVAIALALKKVP---KINGAVKKIIFRTLKLLFWGIILQ 148 (368)
Q Consensus 98 ~t~aDlVfP~FlFivGvSi~ls~~r~~---~k~~~~~kilrRsl~LfllGl~l~ 148 (368)
.++.+.+..++..++|+.+.+.=-+.. +.-......+-|++..+.+|.+..
T Consensus 29 ~~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l~~ 82 (136)
T PF08507_consen 29 FSFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTLCL 82 (136)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHHHH
Confidence 345689999999999998776632211 111345556779999999998764
No 16
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=36.25 E-value=49 Score=24.50 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCh--hHHHHHHHHH
Q 017619 105 MPFFLFIVGVAIALALKKVPKI--NGAVKKIIFR 136 (368)
Q Consensus 105 fP~FlFivGvSi~ls~~r~~~k--~~~~~kilrR 136 (368)
=|+|..++|++.++..+++..+ +.....+++|
T Consensus 8 DP~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 8 DPLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 3899999999999999886544 3444544443
No 17
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=32.36 E-value=4.1e+02 Score=24.57 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhccCcccccccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 017619 65 TLDAFRGLTVVLMILVDDAGGAYARIDHSPWNGCTLADFVMPFFLFIVGVAIAL 118 (368)
Q Consensus 65 SLD~lRGltm~lMIlVN~~g~~~~~l~Ha~WnG~t~aDlVfP~FlFivGvSi~l 118 (368)
|-|.+.=+|++.|++=|.. ... ....+| -..+.-+.||.|.|++.-....
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~ 51 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-FLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH 51 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-ccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh
Confidence 5688889999999885543 211 222223 2246788999999998776554
No 18
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=28.26 E-value=5.7e+02 Score=24.98 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHh--hccC-Chh-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCccceehhhHHHHHH
Q 017619 103 FVMPFFLFIVGVAIALAL--KKVP-KIN-GAVKKIIFRTLKLLFWGIILQGGYSHAPDALSYGVDMKHIRWCGILQRIAL 178 (368)
Q Consensus 103 lVfP~FlFivGvSi~ls~--~r~~-~k~-~~~~kilrRsl~LfllGl~l~~~~~~~~~~l~~~~~~~~~r~~GVLqrIgl 178 (368)
+.+|+.+|+=|.++.=++ ++.. +.- +....+---.....++|+++|..+ | .++..-++--+++
T Consensus 29 ~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~-~------------~i~~~~i~~~l~~ 95 (287)
T PF07760_consen 29 LGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTP-W------------GIRLIPILISLSI 95 (287)
T ss_pred HHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcc-C------------CcchhHHHHHHHH
Confidence 578889999999998888 4332 211 223333344456677888887531 1 2444556666666
Q ss_pred HHHHHHHHHHHhhcC
Q 017619 179 VYVVVALIETLTTKR 193 (368)
Q Consensus 179 ~Yli~all~l~~~~~ 193 (368)
.-++++++...-+++
T Consensus 96 ~t~~~~~~a~~rr~~ 110 (287)
T PF07760_consen 96 FTLVLSIIAYIRRRR 110 (287)
T ss_pred HHHHHHHHHHHhccc
Confidence 666666665444433
No 19
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.17 E-value=68 Score=24.09 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 017619 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (368)
Q Consensus 92 Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~ 121 (368)
|-.|+-+....++|-..+|++|+.+.+|-+
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred ccchhHhhccchHHHHHHHHHHHHHHHcCc
Confidence 446777888999999999999999998864
Done!