Query 017619
Match_columns 368
No_of_seqs 195 out of 708
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 29.5 14 0.00049 24.1 0.5 28 92-119 4-31 (31)
2 2jo1_A Phospholemman; FXYD1, N 24.5 66 0.0023 24.7 3.4 30 92-121 10-39 (72)
3 2jp3_A FXYD domain-containing 22.2 62 0.0021 24.6 2.9 30 92-121 11-40 (67)
4 2zxe_G FXYD10, phospholemman-l 19.6 57 0.0019 25.2 2.2 30 92-121 13-42 (74)
5 2ks1_B Epidermal growth factor 8.3 4.5E+02 0.015 18.1 3.9 27 169-195 14-40 (44)
6 2l2t_A Receptor tyrosine-prote 8.2 4.5E+02 0.015 18.1 3.9 27 169-195 13-39 (44)
7 2l9u_A Receptor tyrosine-prote 6.4 3.6E+02 0.012 18.0 2.5 17 64-80 8-24 (40)
8 2jwa_A Receptor tyrosine-prote 6.0 4.2E+02 0.014 18.3 2.8 26 169-195 15-40 (44)
9 1zcd_A Na(+)/H(+) antiporter 1 4.5 8.7E+02 0.03 23.8 5.1 52 69-120 18-83 (388)
10 3d6r_B NS1, NS1A, non-structur 4.3 3E+02 0.01 23.5 1.4 18 162-179 115-132 (158)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=29.49 E-value=14 Score=24.05 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.9
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHH
Q 017619 92 HSPWNGCTLADFVMPFFLFIVGVAIALA 119 (368)
Q Consensus 92 Ha~WnG~t~aDlVfP~FlFivGvSi~ls 119 (368)
|..|+.+....+++-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 5567788888888889999999988764
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.51 E-value=66 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.3
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 017619 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (368)
Q Consensus 92 Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~ 121 (368)
|-.|+-+...-++|-..+|++|+.+.+|-+
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 456777888899999999999999999975
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.20 E-value=62 Score=24.60 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.2
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 017619 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (368)
Q Consensus 92 Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~ 121 (368)
|-.|+-+...-++|-..+|++|+.+.+|-+
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 456777888899999999999999999975
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=19.63 E-value=57 Score=25.24 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.4
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 017619 92 HSPWNGCTLADFVMPFFLFIVGVAIALALK 121 (368)
Q Consensus 92 Ha~WnG~t~aDlVfP~FlFivGvSi~ls~~ 121 (368)
|-.|.-+...-++|-..+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 556777888999999999999999999975
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.29 E-value=4.5e+02 Score=18.06 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=17.3
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCCC
Q 017619 169 WCGILQRIALVYVVVALIETLTTKRRP 195 (368)
Q Consensus 169 ~~GVLqrIgl~Yli~all~l~~~~~~~ 195 (368)
--||.+-+.+.-+++.+++++.++++.
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 457777666666666666667766654
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.19 E-value=4.5e+02 Score=18.11 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=17.0
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCCC
Q 017619 169 WCGILQRIALVYVVVALIETLTTKRRP 195 (368)
Q Consensus 169 ~~GVLqrIgl~Yli~all~l~~~~~~~ 195 (368)
--||.+-+.+.-+++.+++++.++++.
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 357777666666666666667766643
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.43 E-value=3.6e+02 Score=18.03 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017619 64 ATLDAFRGLTVVLMILV 80 (368)
Q Consensus 64 ~SLD~lRGltm~lMIlV 80 (368)
-++-+.-|+++++|++-
T Consensus 8 malt~i~gl~vif~~lg 24 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 36778889999999884
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=5.96 E-value=4.2e+02 Score=18.30 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=13.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhcCCC
Q 017619 169 WCGILQRIALVYVVVALIETLTTKRRP 195 (368)
Q Consensus 169 ~~GVLqrIgl~Yli~all~l~~~~~~~ 195 (368)
.-||-+ +.+..+++..+.+|.+|++.
T Consensus 15 a~~vVG-vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 15 ISAVVG-ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHH-HHHHHHHHHHHHhheehhhh
Confidence 345666 44444555555566666543
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=4.48 E-value=8.7e+02 Score=23.75 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhccCc--ccccccccC-------CC-----chhhHHHHHHHHHHHHHHHHHHHh
Q 017619 69 FRGLTVVLMILVDDAGG--AYARIDHSP-------WN-----GCTLADFVMPFFLFIVGVAIALAL 120 (368)
Q Consensus 69 lRGltm~lMIlVN~~g~--~~~~l~Ha~-------Wn-----G~t~aDlVfP~FlFivGvSi~ls~ 120 (368)
+=..+++.|++.|.+.. .|-.+-|.+ ++ ..-..|-.+-+|+|++|+=+=..+
T Consensus 18 L~~~~~~al~~aNs~~~~~~y~~~~~~~~~~~~g~~~~~~~l~~windglm~lFff~vGLEik~e~ 83 (388)
T 1zcd_A 18 LIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKREL 83 (388)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHhHHHHHHccccceeccccccCCcHHHHHhhHhHHHHHHHHHHHhhHHH
Confidence 34556778889999864 453333321 11 124679999999999999886554
No 10
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3oa9_A
Probab=4.29 E-value=3e+02 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=13.4
Q ss_pred ccCccceehhhHHHHHHH
Q 017619 162 VDMKHIRWCGILQRIALV 179 (368)
Q Consensus 162 ~~~~~~r~~GVLqrIgl~ 179 (368)
+|..++|..-.|||.+|-
T Consensus 115 WN~Ntvrvse~lqRfawr 132 (158)
T 3d6r_B 115 WNDNSIRASENIQRFAWG 132 (158)
T ss_dssp TTTCEEEECHHHHHHC--
T ss_pred EcCceeehhHHHHHHhhh
Confidence 456789999999998763
Done!