Query 017619
Match_columns 368
No_of_seqs 195 out of 708
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 17:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 8.6 1.6E+02 0.011 18.6 3.3 28 318-349 8-35 (41)
2 d2iuba2 f.17.3.1 (A:286-349) M 6.6 3.3E+02 0.024 17.6 4.6 14 67-80 4-17 (64)
3 d1jbja2 b.1.1.4 (A:1-100) CD3 4.5 97 0.0071 23.3 0.5 13 355-367 51-64 (100)
4 d1axda1 a.45.1.1 (A:81-210) Cl 4.3 99 0.0072 22.2 0.4 24 90-113 69-96 (129)
5 d2axla1 a.4.5.43 (A:1-144) Wer 3.5 2.2E+02 0.016 21.7 1.9 36 38-73 7-42 (144)
6 d1tl2a_ b.67.1.1 (A:) Tachylec 3.2 1.1E+02 0.0078 26.2 -0.4 12 311-322 93-104 (235)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 3.1 7.6E+02 0.055 17.0 5.9 22 104-125 36-57 (100)
8 d1gzga_ c.1.10.3 (A:) 5-aminol 3.0 2.4E+02 0.017 25.1 1.9 20 345-364 185-206 (329)
9 d2gx9a1 d.299.1.1 (A:79-205) N 3.0 2E+02 0.014 21.9 1.0 17 162-178 109-125 (127)
10 d3bnea2 b.12.1.1 (A:7-149) Pla 2.9 3E+02 0.022 21.5 2.1 20 344-363 83-102 (143)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=8.63 E-value=1.6e+02 Score=18.62 Aligned_cols=28 Identities=21% Similarity=0.025 Sum_probs=20.2
Q ss_pred hhchhHHHHHHHHHHHHHhhhhHHHHhhcCCc
Q 017619 318 LSYSLWYNWYSLWTCFDSFQGSLCEAQALGLD 349 (368)
Q Consensus 318 LstL~ai~~y~~~~~~~~~~~~~~~~~~~~~~ 349 (368)
|||-|-.++ ..+...+|.+.+.++..-|
T Consensus 8 lstAPVla~----~w~~~tAG~lIEiNRFfPD 35 (41)
T d1jb0j_ 8 LSTAPVLAA----IWMTITAGILIEFNRFYPD 35 (41)
T ss_dssp TTBHHHHHH----HHHHHHHHHHHHHHHHSCC
T ss_pred HhhhHHHHH----HHHHHHHHHHHHHHhhCch
Confidence 677776655 5577888888888876554
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.55 E-value=3.3e+02 Score=17.64 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 017619 67 DAFRGLTVVLMILV 80 (368)
Q Consensus 67 D~lRGltm~lMIlV 80 (368)
+++|-+|++.+|+.
T Consensus 4 ~~mk~lT~it~ifl 17 (64)
T d2iuba2 4 EVMKVLTIIATIFM 17 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57788888888774
No 3
>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.49 E-value=97 Score=23.28 Aligned_cols=13 Identities=31% Similarity=1.065 Sum_probs=10.0
Q ss_pred ecc-cccccccccc
Q 017619 355 YNS-HHSSFYKCYS 367 (368)
Q Consensus 355 ~~~-~~~~~~~~~~ 367 (368)
|+. |+|++|.||.
T Consensus 51 FSE~e~SGyY~C~~ 64 (100)
T d1jbja2 51 FSEVEDSGYYVCYT 64 (100)
T ss_dssp CCTTTSCEEEEEEC
T ss_pred ccccccCcceEEec
Confidence 444 7999999974
No 4
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=4.27 E-value=99 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=16.1
Q ss_pred ccccCC---CchhhHHH-HHHHHHHHHH
Q 017619 90 IDHSPW---NGCTLADF-VMPFFLFIVG 113 (368)
Q Consensus 90 l~Ha~W---nG~t~aDl-VfP~FlFivG 113 (368)
+.+.+| +.+|++|+ ++|.+..+.-
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~~~ 96 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCLFA 96 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHHTT
T ss_pred HccccccccCccccccHHHHHHHHHHHH
Confidence 445556 55899999 5777666543
No 5
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=2.2e+02 Score=21.68 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=23.9
Q ss_pred ccccccccchhhhhHhhhhhccCchhHHHHHHHHHH
Q 017619 38 ERSEVQDEQKGELQLQQLLQQKSKRVATLDAFRGLT 73 (368)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~Rl~SLD~lRGlt 73 (368)
.+.++-.|+.--|+.......+-..-.-+|+|||-.
T Consensus 7 ~~~D~T~eA~~iLs~V~~~~~rfg~~~iidiL~Gs~ 42 (144)
T d2axla1 7 TSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSN 42 (144)
T ss_dssp SEEECHHHHHHHHHHHHHTTTCSCSHHHHHHHTCCS
T ss_pred cceehHHHHHHHHHHHHHhcccccchHHHHHHHhcc
Confidence 345555566666676666666666778889999843
No 6
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}
Probab=3.16 E-value=1.1e+02 Score=26.20 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.0
Q ss_pred CCCCccchhchh
Q 017619 311 PFEPEGLLSYSL 322 (368)
Q Consensus 311 ~fDPEGLLstL~ 322 (368)
.|||+|+|+.+.
T Consensus 93 ffdP~G~LyaVt 104 (235)
T d1tl2a_ 93 FFDPNGYLYAVS 104 (235)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCceEEEec
Confidence 579999998765
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.08 E-value=7.6e+02 Score=17.01 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 017619 104 VMPFFLFIVGVAIALALKKVPK 125 (368)
Q Consensus 104 VfP~FlFivGvSi~ls~~r~~~ 125 (368)
+...|+++.|+.+....+.|.+
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 4456777777777777765443
No 8
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.02 E-value=2.4e+02 Score=25.09 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=15.3
Q ss_pred hcCCceE-EEEe-ccccccccc
Q 017619 345 ALGLDGV-WLTY-NSHHSSFYK 364 (368)
Q Consensus 345 ~~~~~~~-~~~~-~~~~~~~~~ 364 (368)
+.|...| |+.| .++.|+||.
T Consensus 185 ~~g~~~v~ImsYsaKfaS~fYG 206 (329)
T d1gzga_ 185 SAGHTNVRVMAYSAKYASAYYG 206 (329)
T ss_dssp HTTCTTCEEEEEEEEBCCGGGH
T ss_pred HcCCcCcceeehhhhhchhhhh
Confidence 4555544 8999 799999995
No 9
>d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal domain {Influenza A virus [TaxId: 11320]}
Probab=3.00 E-value=2e+02 Score=21.91 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=13.6
Q ss_pred ccCccceehhhHHHHHH
Q 017619 162 VDMKHIRWCGILQRIAL 178 (368)
Q Consensus 162 ~~~~~~r~~GVLqrIgl 178 (368)
++..++|..--|||.+|
T Consensus 109 wndntvrvse~lqRfaw 125 (127)
T d2gx9a1 109 WNDNTVRVSETLQRFAW 125 (127)
T ss_dssp TTTCEEEECHHHHHHTC
T ss_pred ecCceeeHHHHHHHHhh
Confidence 35568999999999875
No 10
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=2.85 E-value=3e+02 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=0.0
Q ss_pred hhcCCceEEEEecccccccc
Q 017619 344 QALGLDGVWLTYNSHHSSFY 363 (368)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~ 363 (368)
...|..|-+++=|.||+-||
T Consensus 83 ~~fG~PGAi~V~N~h~~Eff 102 (143)
T d3bnea2 83 GSMGIPGAFYIKNYMQVEFF 102 (143)
T ss_dssp GGGCCEEEEEEEECSSSCEE
T ss_pred ccCCCccEEEEEecCCccEE
Done!