Query 017620
Match_columns 368
No_of_seqs 148 out of 167
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 7E-116 1E-120 844.8 25.5 358 6-367 105-462 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 1.5E-55 3.3E-60 405.7 19.2 179 182-360 1-196 (196)
3 PF12537 DUF3735: Protein of u 99.9 1.2E-26 2.7E-31 181.6 3.8 71 41-111 1-72 (72)
4 PF04791 LMBR1: LMBR1-like mem 93.2 1.5 3.3E-05 45.2 13.3 32 49-80 161-192 (471)
5 PRK11546 zraP zinc resistance 88.4 9 0.00019 34.1 11.3 34 148-184 86-119 (143)
6 TIGR02338 gimC_beta prefoldin, 59.6 1E+02 0.0022 25.6 10.6 95 89-183 8-106 (110)
7 PF05082 Rop-like: Rop-like; 57.1 24 0.00051 27.4 4.5 29 151-179 2-30 (66)
8 PF03350 UPF0114: Uncharacteri 57.1 86 0.0019 26.9 8.6 64 248-311 4-72 (124)
9 KOG0709 CREB/ATF family transc 54.6 53 0.0011 34.6 7.9 50 154-203 289-338 (472)
10 PRK10803 tol-pal system protei 53.9 1.2E+02 0.0025 29.4 9.9 65 86-179 39-103 (263)
11 KOG0971 Microtubule-associated 53.1 88 0.0019 35.8 9.7 102 86-187 1014-1128(1243)
12 KOG2019 Metalloendoprotease HM 53.0 81 0.0017 35.2 9.2 45 63-107 353-406 (998)
13 COG3074 Uncharacterized protei 50.7 42 0.0009 26.5 5.0 31 151-181 18-48 (79)
14 PRK11637 AmiB activator; Provi 48.5 2.1E+02 0.0045 29.5 11.3 32 85-116 45-76 (428)
15 PRK09343 prefoldin subunit bet 48.0 1.5E+02 0.0033 25.3 8.6 37 151-187 78-114 (121)
16 PF01486 K-box: K-box region; 46.8 1E+02 0.0023 25.0 7.2 29 83-111 45-73 (100)
17 PF08317 Spc7: Spc7 kinetochor 45.6 1.8E+02 0.0039 28.9 10.1 32 85-116 207-238 (325)
18 PF11932 DUF3450: Protein of u 44.8 2.8E+02 0.0061 26.3 11.4 34 150-183 83-116 (251)
19 PF10805 DUF2730: Protein of u 44.2 1E+02 0.0022 25.7 6.9 30 82-118 30-59 (106)
20 PF14389 Lzipper-MIP1: Leucine 43.1 1.5E+02 0.0032 24.0 7.4 24 151-174 61-84 (88)
21 KOG3231 Predicted assembly/vac 42.8 2E+02 0.0043 26.5 8.8 30 154-183 39-73 (208)
22 PRK15422 septal ring assembly 42.5 1.8E+02 0.0039 23.4 8.5 26 89-114 6-31 (79)
23 PRK09039 hypothetical protein; 40.9 2.6E+02 0.0056 28.2 10.4 31 151-181 137-167 (343)
24 COG3883 Uncharacterized protei 40.4 3.5E+02 0.0075 26.6 10.7 16 150-165 79-94 (265)
25 PF07106 TBPIP: Tat binding pr 38.1 2.9E+02 0.0063 24.5 9.9 32 84-115 69-100 (169)
26 PF06005 DUF904: Protein of un 37.4 1.3E+02 0.0028 23.6 6.0 28 151-178 18-45 (72)
27 PF14077 WD40_alt: Alternative 37.3 44 0.00096 24.2 3.0 22 151-172 18-39 (48)
28 PF04123 DUF373: Domain of unk 36.9 4.7E+02 0.01 26.6 13.2 152 175-350 147-310 (344)
29 PF04156 IncA: IncA protein; 36.5 3.2E+02 0.0068 24.5 10.1 22 88-109 82-103 (191)
30 PF00170 bZIP_1: bZIP transcri 36.1 1.2E+02 0.0026 22.5 5.6 34 151-184 26-59 (64)
31 PF01920 Prefoldin_2: Prefoldi 34.7 2.4E+02 0.0051 22.5 10.0 31 151-181 69-99 (106)
32 PRK15422 septal ring assembly 34.0 1.4E+02 0.0031 24.0 5.8 26 151-176 18-43 (79)
33 KOG0994 Extracellular matrix g 33.8 2.3E+02 0.0051 33.5 9.3 75 82-178 1220-1294(1758)
34 PF04111 APG6: Autophagy prote 33.5 4.9E+02 0.011 25.9 11.1 29 151-179 78-106 (314)
35 COG4942 Membrane-bound metallo 33.5 4.4E+02 0.0096 27.6 10.8 27 151-177 161-187 (420)
36 KOG3584 cAMP response element 33.0 95 0.0021 30.9 5.6 33 151-183 312-344 (348)
37 PF13314 DUF4083: Domain of un 32.9 36 0.00078 25.8 2.1 46 47-103 4-55 (58)
38 cd00632 Prefoldin_beta Prefold 32.3 2.8E+02 0.0061 22.7 10.5 90 94-183 9-102 (105)
39 KOG0250 DNA repair protein RAD 31.9 4.4E+02 0.0096 30.8 11.2 46 150-195 400-446 (1074)
40 TIGR00985 3a0801s04tom mitocho 31.9 22 0.00047 31.8 1.0 31 188-228 6-36 (148)
41 PF13801 Metal_resist: Heavy-m 31.8 2.6E+02 0.0057 22.2 8.7 33 82-114 40-72 (125)
42 COG1579 Zn-ribbon protein, pos 30.4 5.1E+02 0.011 25.0 10.1 38 148-185 86-123 (239)
43 PF09753 Use1: Membrane fusion 30.2 1.2E+02 0.0027 28.8 5.9 30 155-184 189-218 (251)
44 COG4942 Membrane-bound metallo 29.9 6.6E+02 0.014 26.4 11.3 21 94-114 38-58 (420)
45 PRK15396 murein lipoprotein; P 29.9 1.8E+02 0.0039 23.3 5.8 54 55-119 7-64 (78)
46 PF08232 Striatin: Striatin fa 29.6 1.4E+02 0.003 26.1 5.6 42 151-192 32-75 (134)
47 KOG1691 emp24/gp25L/p24 family 29.4 1.1E+02 0.0023 29.1 5.1 38 150-187 133-170 (210)
48 PF10779 XhlA: Haemolysin XhlA 28.7 2E+02 0.0044 22.0 5.8 39 156-194 18-56 (71)
49 COG1704 LemA Uncharacterized c 26.9 5.2E+02 0.011 24.1 9.5 32 150-181 117-151 (185)
50 PF07438 DUF1514: Protein of u 26.9 1.9E+02 0.0042 22.4 5.2 23 154-176 21-43 (66)
51 PF14723 SSFA2_C: Sperm-specif 26.7 5.1E+02 0.011 23.9 9.1 27 157-183 144-170 (179)
52 PRK09973 putative outer membra 26.6 2.2E+02 0.0048 23.2 5.8 47 62-119 15-63 (85)
53 PF05377 FlaC_arch: Flagella a 26.2 2.1E+02 0.0046 21.5 5.2 32 154-185 3-34 (55)
54 PF14048 MBD_C: C-terminal dom 26.1 82 0.0018 26.1 3.3 16 84-99 73-88 (96)
55 smart00338 BRLZ basic region l 26.1 2.1E+02 0.0046 21.2 5.4 33 151-183 26-58 (65)
56 PF15361 RIC3: Resistance to i 25.6 76 0.0017 28.4 3.3 22 80-101 124-145 (152)
57 KOG0483 Transcription factor H 25.4 2E+02 0.0043 27.0 6.1 91 80-186 53-147 (198)
58 PF03376 Adeno_E3B: Adenovirus 25.4 2.2E+02 0.0047 22.2 5.2 34 245-278 9-42 (67)
59 PF05508 Ran-binding: RanGTP-b 25.3 4.9E+02 0.011 26.1 9.1 51 46-97 1-55 (302)
60 KOG4098 Molecular chaperone Pr 25.2 4.8E+02 0.01 23.1 10.2 100 83-186 14-114 (140)
61 KOG2171 Karyopherin (importin) 24.6 1.2E+02 0.0026 35.2 5.3 61 42-102 732-792 (1075)
62 PF12325 TMF_TATA_bd: TATA ele 24.5 2.2E+02 0.0048 24.5 5.8 35 150-184 29-63 (120)
63 PF12507 HCMV_UL139: Human Cyt 23.3 69 0.0015 27.7 2.4 45 153-197 46-90 (121)
64 KOG1937 Uncharacterized conser 22.9 5.4E+02 0.012 27.4 9.1 37 150-186 351-387 (521)
65 KOG2577 Transcription factor E 22.8 1.5E+02 0.0032 30.3 5.1 36 149-184 142-177 (354)
66 PRK10884 SH3 domain-containing 22.6 6.4E+02 0.014 23.6 10.1 91 86-204 99-189 (206)
67 PF08657 DASH_Spc34: DASH comp 22.0 4.9E+02 0.011 25.3 8.3 77 87-169 180-257 (259)
68 PF07716 bZIP_2: Basic region 21.6 2.7E+02 0.0059 20.0 5.1 28 152-179 26-53 (54)
69 PF04799 Fzo_mitofusin: fzo-li 21.4 2.7E+02 0.0058 25.6 6.0 34 150-183 126-162 (171)
70 TIGR02231 conserved hypothetic 20.9 9E+02 0.02 25.5 10.8 36 151-186 138-173 (525)
71 PF00846 Hanta_nucleocap: Hant 20.8 9E+02 0.02 25.2 10.1 31 88-118 3-33 (428)
72 smart00787 Spc7 Spc7 kinetocho 20.6 8.3E+02 0.018 24.4 9.8 33 85-117 202-234 (312)
73 TIGR00967 3a0501s007 preprotei 20.5 97 0.0021 32.0 3.4 43 29-71 327-370 (410)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-116 Score=844.77 Aligned_cols=358 Identities=53% Similarity=0.896 Sum_probs=340.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCcccccchhhceehhhHHHHHHhhccccccccccccccccccCC
Q 017620 6 GVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID 85 (368)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~l~~FwklG~~~p~~s~~~g~~~~e~~isRvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~Vt 85 (368)
+++|++++++++.+|.+|+|+|||+|||||++||+||+|+|||.+|||||||||+||+||||||||+||+||++|.|||+
T Consensus 105 ~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR~Ve 184 (462)
T KOG2417|consen 105 GVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIRPVE 184 (462)
T ss_pred cchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHHHhccCccCCchhhhhhhhcccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHHHHHH
Q 017620 86 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 165 (368)
Q Consensus 86 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~~Le~ 165 (368)
|.||.++||||.||+||+.+||||+++++-+. +...+++.++.++|+.|.+|...++.++++.++||+.||+|+++||+
T Consensus 185 e~di~~lErrL~qtmdmiisKKkk~a~~~l~~-~~l~~e~~~k~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEe 263 (462)
T KOG2417|consen 185 ETDIIQLERRLAQTMDMIISKKKKMAMAQLEE-KRLQSEKVQKEPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEE 263 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhcccCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999888532 22333335667899999997544555666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhhhheehhhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhccccccH
Q 017620 166 LSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINA 245 (368)
Q Consensus 166 l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~DPit~~L~~~~~~~~~~~d~ 245 (368)
++||||+|+.||+++++|.++||||+|+++|++||+||+||||||+++++|++|+|.+++||+||.+++.++++|++.|+
T Consensus 264 LsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFdrvGk~DPVTr~IeI~v~~~gi~~Dv 343 (462)
T KOG2417|consen 264 LSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFDRVGKVDPVTRGIEITVNYLGIDFDV 343 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhhhccCcCCccceeEEEEEEecccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Q 017620 246 QLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVL 325 (368)
Q Consensus 246 ~~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~s~~~s~~~~~ivL~laqlmG~YfiSt~LLlRsnLP~~~~~~i~~vL 325 (368)
..|+|||||+|+|+|+++|+||+|.|++||+++.++++++|. ++|+++|+|||||+|++||||+|+|.|||.+++++|
T Consensus 344 ~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~--ivl~l~qimgmyf~ssvllirms~p~Eyr~iit~Vl 421 (462)
T KOG2417|consen 344 SFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNI--IVLFLAQIMGMYFVSSVLLIRMSMPAEYRTIITEVL 421 (462)
T ss_pred HHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccc--hHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred cCCccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 017620 326 GGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPI 367 (368)
Q Consensus 326 g~~lef~f~~~wFD~iFliSa~~T~~~l~~~~~~~~~~~~~~ 367 (368)
| |++|||||||||.+|++||+.|+++++++||.+++|+|+.
T Consensus 422 G-dlqfnfyhRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a~ 462 (462)
T KOG2417|consen 422 G-DLQFNFYHRWFDVIFLVSALSSILFLYLHHKSRQSDKHAI 462 (462)
T ss_pred h-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 9 9999999999999999999999999999999999999974
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=1.5e-55 Score=405.69 Aligned_cols=179 Identities=46% Similarity=0.778 Sum_probs=172.4
Q ss_pred HHHhccCchhhhHHHHhhhheehhhhHHHHHHHHHHHhcc---------------CCCCChHHHHHHHHHhhccccccHH
Q 017620 182 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 246 (368)
Q Consensus 182 ~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~---------------~~~~DPit~~L~~~~~~~~~~~d~~ 246 (368)
||+++++|++||+++++||+|++||+|||+++++|+++++ .+++||+|++|+++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5788999999999999999999999999999999999877 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhc
Q 017620 247 LLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLG 326 (368)
Q Consensus 247 ~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~s~~~s~~~~~ivL~laqlmG~YfiSt~LLlRsnLP~~~~~~i~~vLg 326 (368)
+|+|||||+|+|+|++||+|+|+.|+.++++++|+..+.+..+++|++||+||+||+||+||||+|||+|++.+++++||
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg 160 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILG 160 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998664569999999999999999999999999999999999999
Q ss_pred --CCccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 017620 327 --GEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSR 360 (368)
Q Consensus 327 --~~lef~f~~~wFD~iFliSa~~T~~~l~~~~~~~ 360 (368)
+++||+|||+|||.+|++||++|++++|++||.|
T Consensus 161 ~~~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 161 ENSLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999875
No 3
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.93 E-value=1.2e-26 Score=181.60 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.8
Q ss_pred CCcccccchhhceehhhHHHHHHhhccccccccccccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 41 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 111 (368)
Q Consensus 41 ~g~~~~e~~isRvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~Vt-~~dI~~~e~~l~~t~~~l~~Kk~rl~ 111 (368)
||++++|++++||||+|||+||+|||||||||||+++++|.||++ |.||+++|++++||.|+|.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 688999999999999999999999999999999999999999999 99999999999999999999999863
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=93.25 E-value=1.5 Score=45.24 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.3
Q ss_pred hhhceehhhHHHHHHhhccccccccccccccc
Q 017620 49 LVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 80 (368)
Q Consensus 49 ~isRvgViGVt~mA~LSGfGAVs~Py~~~~~f 80 (368)
+++=....|..++.++-|+|=|.-|-+.+..+
T Consensus 161 ~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 161 LIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 45556778999999999999999999876544
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.40 E-value=9 Score=34.11 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 148 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 148 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
++++.|++|.+||..|.. +|+.+=.+++.+.++.
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 445679999999988776 7776666666555554
No 6
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=59.56 E-value=1e+02 Score=25.63 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCc----chhHhHHHHHHHHHHHH
Q 017620 89 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALE 164 (368)
Q Consensus 89 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~L~~EI~~Le 164 (368)
....-+++.+.+..+.+++..+....+++......-..-+.+.-..+.+|.++---+-+ .-...+..++.+|+.|+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566666666555544433322111111112334556666555221110 11244556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017620 165 ELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 165 ~l~~~L~~el~~L~~~~~~ 183 (368)
.-...+-.++.++++..++
T Consensus 88 k~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 88 RQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655443
No 7
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=57.13 E-value=24 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
+++.+|+.||.-|.....++-.|||+|-.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999865
No 8
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=57.05 E-value=86 Score=26.90 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----hccCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 017620 248 LSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV-----SRVGSGSSSNVVLFLSEIMGMYFVSSILLIRK 311 (368)
Q Consensus 248 ~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~-----s~~~s~~~~~ivL~laqlmG~YfiSt~LLlRs 311 (368)
.+|++.+..+-+++++++-=+......++..+ +...+.+..-+++-+-++.-+|.++++++|=+
T Consensus 4 ~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~ 72 (124)
T PF03350_consen 4 ASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFA 72 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888877755555544444443 22222222247888899999999999998853
No 9
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=54.59 E-value=53 Score=34.58 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhhhhee
Q 017620 154 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALS 203 (368)
Q Consensus 154 ~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~~~~g~~fs 203 (368)
++|++.|+.||.-.+.|+.+|.+++........+.|-.|+...++.+-|+
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~ 338 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFC 338 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHH
Confidence 69999999999999999999999998888777777888877776665443
No 10
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.91 E-value=1.2e+02 Score=29.43 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHHHHHH
Q 017620 86 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 165 (368)
Q Consensus 86 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~~Le~ 165 (368)
+..+.++|+.+..-...+.+--.+|+.++++..+ +- .++.+++-|++.+.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~----------------Lr-------------G~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS----------------LR-------------GQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------------Hh-------------hHHHHHHHHHHHHHH
Confidence 4556677766665444444444455555544321 11 134577889999999
Q ss_pred HHHHHHHHHHHHHH
Q 017620 166 LSKQLFLEIYELRQ 179 (368)
Q Consensus 166 l~~~L~~el~~L~~ 179 (368)
=.+++|.||.++..
T Consensus 90 rq~~~y~dld~r~~ 103 (263)
T PRK10803 90 RQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
No 11
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.10 E-value=88 Score=35.78 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccch--------hhhhhchhhhhhhcee----cc-ccCcchhHh
Q 017620 86 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEE--------KLKARSFFKRIVGTVV----RS-VQDDQKEQD 152 (368)
Q Consensus 86 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~-~~~~~~~~~ 152 (368)
+.++..+|+.+++|||+|..+=+++..-+.....+....+ ...+.++-.++.|... +| ...+....+
T Consensus 1014 ~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k~q~~s~~~~~~~ist~~sG~~s~~~~~s~~~g~a~~g~ 1093 (1243)
T KOG0971|consen 1014 QALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKKTQEGSRGPPPSGISTLVSGIASEEQQRSAIPGQALVGD 1093 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccccCccccCCCCcceeccccCCCCCccccccCCCcccccc
Confidence 4468888888999999988876665543333222211110 0001111111111000 00 011111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017620 153 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 187 (368)
Q Consensus 153 i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s 187 (368)
.--|.+||+.|..-.++.-.|-.+|+...-|+..+
T Consensus 1094 ~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~a 1128 (1243)
T KOG0971|consen 1094 SPLLLQQINALRNAISQERHERSILKGAQMRASLA 1128 (1243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 45778889988888888888888888777776543
No 12
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=52.97 E-value=81 Score=35.23 Aligned_cols=45 Identities=22% Similarity=0.422 Sum_probs=36.2
Q ss_pred Hhhccc---cccccccc------cccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 017620 63 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK 107 (368)
Q Consensus 63 ~LSGfG---AVs~Py~~------~~~f~r~Vt~~dI~~~e~~l~~t~~~l~~Kk 107 (368)
+=||.| +||+-|.- |+.-.+-|+|.||+..|.-.+.|.+-+++++
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g 406 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG 406 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 348888 88887763 3444788999999999999999999888854
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.71 E-value=42 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
+-|.-|++||+.|++=..+|-.|..+++..+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~r 48 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 3478899999999999999999888766443
No 14
>PRK11637 AmiB activator; Provisional
Probab=48.46 E-value=2.1e+02 Score=29.46 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 85 DESEIKALERQLMQSIETCIAKKKKIILCQME 116 (368)
Q Consensus 85 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 116 (368)
.+.++.++++++.+..+.+...++++..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766666555555544443
No 15
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.00 E-value=1.5e+02 Score=25.27 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 187 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s 187 (368)
+.+..++.+|+.||.=...+-..+.++++..++...+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888888888777666554
No 16
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.76 E-value=1e+02 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 83 EIDESEIKALERQLMQSIETCIAKKKKII 111 (368)
Q Consensus 83 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~ 111 (368)
+.+-.|+..+|++++.++.-+.++|.++-
T Consensus 45 ~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l 73 (100)
T PF01486_consen 45 SLSLKELQQLEQQLESALKRVRSRKDQLL 73 (100)
T ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45556778888888888777777766543
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.56 E-value=1.8e+02 Score=28.87 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 85 DESEIKALERQLMQSIETCIAKKKKIILCQME 116 (368)
Q Consensus 85 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 116 (368)
+..+++.+.++|......|.++|++++.++.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~e 238 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEE 238 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666665544
No 18
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.79 E-value=2.8e+02 Score=26.31 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
.+++..|+.+|+.++..++++.--+.++....++
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887776666665554444
No 19
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.17 E-value=1e+02 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017620 82 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 118 (368)
Q Consensus 82 r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 118 (368)
+.++.+|+..+++++.+. .+|+...+.++.
T Consensus 30 ~~a~~~~~~~l~~~~~~~-------~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEH-------DRRLQALETKLE 59 (106)
T ss_pred hhccHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 567888999988766653 456677666554
No 20
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=43.08 E-value=1.5e+02 Score=24.02 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEI 174 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el 174 (368)
.||+.|+.||.-||.=-.+|+.++
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666665444444444
No 21
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.78 E-value=2e+02 Score=26.51 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 017620 154 KIMEAEVQALEEL-----SKQLFLEIYELRQAKEA 183 (368)
Q Consensus 154 ~~L~~EI~~Le~l-----~~~L~~el~~L~~~~~~ 183 (368)
++|++||.-+-.. .+.|..+|.+|+.++-|
T Consensus 39 k~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtr 73 (208)
T KOG3231|consen 39 KQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTR 73 (208)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhh
Confidence 4566666555433 56777888888766543
No 22
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.52 E-value=1.8e+02 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 89 IKALERQLMQSIETCIAKKKKIILCQ 114 (368)
Q Consensus 89 I~~~e~~l~~t~~~l~~Kk~rl~~~~ 114 (368)
+..+|.+..++.|.|.-=+-++..++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555444444443
No 23
>PRK09039 hypothetical protein; Validated
Probab=40.93 E-value=2.6e+02 Score=28.19 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
.++..|++||++|+.--.++-.+|.+.+.+.
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777776666666666666655443
No 24
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.42 E-value=3.5e+02 Score=26.61 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=10.6
Q ss_pred hHhHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEE 165 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~ 165 (368)
.++|+.|+.||+.+++
T Consensus 79 ~~eik~l~~eI~~~~~ 94 (265)
T COG3883 79 KAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777766665
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.10 E-value=2.9e+02 Score=24.53 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 84 IDESEIKALERQLMQSIETCIAKKKKIILCQM 115 (368)
Q Consensus 84 Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~ 115 (368)
+++.++..+...+.+..+-+.+-+.+...++.
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766655555554544444443
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.36 E-value=1.3e+02 Score=23.64 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELR 178 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~ 178 (368)
+.|..|+.|++.|++=..++..+-.+|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567788888888777555555555554
No 27
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=37.29 E-value=44 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFL 172 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~ 172 (368)
...++|+.|+..|..+.+.||.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 4567999999999999999985
No 28
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=36.85 E-value=4.7e+02 Score=26.61 Aligned_cols=152 Identities=19% Similarity=0.314 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhccCchhhhHHHHhhhheehhhhHHHHHHHHHHHhccCCCCChHHHHHHHHHhhccccccH---HHHHHH
Q 017620 175 YELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVTMTISIFLQFFDIGINA---QLLSQY 251 (368)
Q Consensus 175 ~~L~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~DPit~~L~~~~~~~~~~~d~---~~~s~~ 251 (368)
.-+++....+++++|+.| ++|.++.+|-+..++...-.. .--++-.+...+.+-+..+|. +.|.+.
T Consensus 147 ~YlKk~l~Dp~~~~~~lG----vPG~~lLiy~i~~l~~~~~~a-------~~~i~~~iG~yll~kGfgld~~~~~~~~~~ 215 (344)
T PF04123_consen 147 RYLKKALSDPEYRRTFLG----VPGLILLIYAILALLGYPAYA-------LGIILLLIGLYLLYKGFGLDDYLREWLERF 215 (344)
T ss_pred HHHHHhhcChhhhceeec----chHHHHHHHHHHHHHcchHHH-------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 335677888899999999 899999999988776541110 112223344333333555553 334443
Q ss_pred --------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCc-chHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 017620 252 --------ISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSS-SNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIIT 322 (368)
Q Consensus 252 --------ISf~L~G~liv~S~r~~L~tl~~~~~~~s~~~s~~~-~~ivL~laqlmG~YfiSt~LLlRsnLP~~~~~~i~ 322 (368)
++|+-.-.-++..+-+.......+... ..... .....++......+.+|-+. ......++
T Consensus 216 ~~~l~~g~it~ityvva~~l~iig~i~g~~~~~~~----~~~~~~~~~~~f~~~~v~~~~~a~l~-------~~~G~iid 284 (344)
T PF04123_consen 216 RESLYEGRITFITYVVALLLIIIGIIYGYLTLWSY----YSISGLIVPGTFLYGSVPWLALAALI-------ASLGKIID 284 (344)
T ss_pred ccccccceeehHHHHHHHHHHHHHHHHHHHHHHhh----ccccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 454433332222333333222222211 11111 01122566666655555544 23455666
Q ss_pred HHhcCCccccchhhhhhHHHHHHHHHHH
Q 017620 323 EVLGGEIQFDFYHRWFDAIFVASAFLSL 350 (368)
Q Consensus 323 ~vLg~~lef~f~~~wFD~iFliSa~~T~ 350 (368)
+.+++ ++..++.+.-..|+++....+
T Consensus 285 ~~l~~--~~~~~~~i~~~~~~~a~~~v~ 310 (344)
T PF04123_consen 285 EYLRR--DFRLWRYINAPFFVIAIGLVL 310 (344)
T ss_pred HHHcc--CcchHHHHHHHHHHHHHHHHH
Confidence 66775 555555555555555554433
No 29
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.48 E-value=3.2e+02 Score=24.50 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017620 88 EIKALERQLMQSIETCIAKKKK 109 (368)
Q Consensus 88 dI~~~e~~l~~t~~~l~~Kk~r 109 (368)
|+...++++.+..+-+.+-.++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQER 103 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555555444444433333
No 30
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.09 E-value=1.2e+02 Score=22.55 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
..+..|+.++..|+....+|-.++..|..+.++-
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999998888888888888766543
No 31
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.67 E-value=2.4e+02 Score=22.50 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
+++..++.||+.|+.-...+-.++.+++...
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655443
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.03 E-value=1.4e+02 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYE 176 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~ 176 (368)
+.|.-|++||+-|++=..+|..|...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988888887665
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=33.78 E-value=2.3e+02 Score=33.54 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=45.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHH
Q 017620 82 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 161 (368)
Q Consensus 82 r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~ 161 (368)
+.|+.+||+++-..+....+.|.+-+.++.+.+..+.. +..+. .....++..||.|.+
T Consensus 1220 ~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsd----------------i~~~~------~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1220 PSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSD----------------ITNSL------PLAGKDLESLQREFN 1277 (1758)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----------------hhhcc------chhhhhHHHHHHHHH
Confidence 45777777777666665555555555554444433321 11000 112356789999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017620 162 ALEELSKQLFLEIYELR 178 (368)
Q Consensus 162 ~Le~l~~~L~~el~~L~ 178 (368)
+|..+.++|-..+.+++
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998888877777665
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.51 E-value=4.9e+02 Score=25.86 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
+++..|+.|.+.|+..+.+.+.+.++++.
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~~ 106 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQL 106 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666666666655553
No 35
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.51 E-value=4.4e+02 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYEL 177 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L 177 (368)
+.+..|.+....|...+..+..|=.++
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l 187 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAEL 187 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443333
No 36
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=33.00 E-value=95 Score=30.93 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
+.++-||..+.-||.-.+.|--||..|+..+.+
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 578899999999999999998888888776553
No 37
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=32.91 E-value=36 Score=25.75 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=29.5
Q ss_pred cchhhceehhhHHHHHHhhccccccccccccccccc------cCCHHHHHHHHHHHHHHHHHH
Q 017620 47 PQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR------EIDESEIKALERQLMQSIETC 103 (368)
Q Consensus 47 e~~isRvgViGVt~mA~LSGfGAVs~Py~~~~~f~r------~Vt~~dI~~~e~~l~~t~~~l 103 (368)
+..+--++|+|+.++..+| |+.|.| +....|....|++|+...++|
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 4455566778877776554 223443 345566778888888887774
No 38
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.29 E-value=2.8e+02 Score=22.68 Aligned_cols=90 Identities=20% Similarity=0.302 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCc----chhHhHHHHHHHHHHHHHHHHH
Q 017620 94 RQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALEELSKQ 169 (368)
Q Consensus 94 ~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~L~~EI~~Le~l~~~ 169 (368)
+.+.+.+.-+.+++.++....++.......-..-....-+.+.+|.+|-..+-+ .-+..+..++.+|+.++.=...
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666655544433221111011112233446666555332211 1124455666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 017620 170 LFLEIYELRQAKEA 183 (368)
Q Consensus 170 L~~el~~L~~~~~~ 183 (368)
+-.++.+++...+.
T Consensus 89 l~~~~~elk~~l~~ 102 (105)
T cd00632 89 LQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.93 E-value=4.4e+02 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=34.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhhHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS-RTWRGHMQ 195 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s-~T~~Gr~~ 195 (368)
+.+++.|++||+.+|+...+|-.|+.++++...+.+.. .+..|+..
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~ 446 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEIL 446 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46789999999999999999999999988765555443 23445443
No 40
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=31.91 E-value=22 Score=31.85 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.1
Q ss_pred CchhhhHHHHhhhheehhhhHHHHHHHHHHHhccCCCCChH
Q 017620 188 RTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 228 (368)
Q Consensus 188 ~T~~Gr~~~~~g~~fsiYCvyKi~~t~~~~~f~~~~~~DPi 228 (368)
+|..+-...+.+-+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 444454455678889999976 7877777775
No 41
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=31.81 E-value=2.6e+02 Score=22.16 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=18.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 82 REIDESEIKALERQLMQSIETCIAKKKKIILCQ 114 (368)
Q Consensus 82 r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 114 (368)
..+|+++-..+++-.+...+-...-|.++...+
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r 72 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAAR 72 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888877777666655544444444444433
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.41 E-value=5.1e+02 Score=25.05 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=29.5
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 148 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 185 (368)
Q Consensus 148 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 185 (368)
+++.+.++|+.|+..++.=..+|-.|+.++..+++..+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999998888888888888888877666544
No 43
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=30.19 E-value=1.2e+02 Score=28.84 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 155 IMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 155 ~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
.|+.+-.-|+.....+=.++..|..+..|.
T Consensus 189 ~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl 218 (251)
T PF09753_consen 189 ILKEDNKVLDRTEEGLDRNLSSLKRESKRL 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777544443
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=29.88 E-value=6.6e+02 Score=26.35 Aligned_cols=21 Identities=38% Similarity=0.211 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 017620 94 RQLMQSIETCIAKKKKIILCQ 114 (368)
Q Consensus 94 ~~l~~t~~~l~~Kk~rl~~~~ 114 (368)
++++++...|.++.+++...+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666555555555433
No 45
>PRK15396 murein lipoprotein; Provisional
Probab=29.85 E-value=1.8e+02 Score=23.27 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=29.5
Q ss_pred hhhHHHHH--HhhccccccccccccccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017620 55 VIGVTVMA--VLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 119 (368)
Q Consensus 55 ViGVt~mA--~LSGfGAVs~Py~~~~~f~r~Vt--~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 119 (368)
++|..+++ +|+| |.|+| .|+ .+|+..+..+.++.......-|..+..++.++.|
T Consensus 7 ~l~av~ls~~LLaG--CAs~~---------kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 7 VLGAVILGSTLLAG--CSSNA---------KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 4565 55666 222 2356666666666666666666655555554443
No 46
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.56 E-value=1.4e+02 Score=26.08 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCchhh
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTWRG 192 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~--~~~~~~~s~T~~G 192 (368)
+.|+.||-|..++|.+...|-.-+..|+. .++|.++.+...|
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~ 75 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYG 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 46889999999999999999998888885 5666666554444
No 47
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.35 E-value=1.1e+02 Score=29.07 Aligned_cols=38 Identities=26% Similarity=0.499 Sum_probs=34.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 187 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s 187 (368)
.+++..++.|+.-||.+..++-.|+.-|+.|.++.+.-
T Consensus 133 keklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ 170 (210)
T KOG1691|consen 133 KEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT 170 (210)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999988887763
No 48
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=28.72 E-value=2e+02 Score=22.02 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhH
Q 017620 156 MEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHM 194 (368)
Q Consensus 156 L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~Gr~ 194 (368)
++.+++.||.=....-.++..+..+..+.....+|.-+.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ 56 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRT 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444555555555555555554443
No 49
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=26.94 E-value=5.2e+02 Score=24.07 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=22.9
Q ss_pred hHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEE---LSKQLFLEIYELRQAK 181 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~---l~~~L~~el~~L~~~~ 181 (368)
.+.-..|+++++++|. ++|++|.+...-.+..
T Consensus 117 n~~f~~Lq~ql~~tEn~Ia~aR~~YN~av~~yN~~ 151 (185)
T COG1704 117 NENFLELQSQLEGTENRIAVARRLYNEAVRDYNVK 151 (185)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888884 6888888877655443
No 50
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=26.92 E-value=1.9e+02 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017620 154 KIMEAEVQALEELSKQLFLEIYE 176 (368)
Q Consensus 154 ~~L~~EI~~Le~l~~~L~~el~~ 176 (368)
+.++.|+++|+.+..-|+.++.+
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47789999999999999887765
No 51
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=26.72 E-value=5.1e+02 Score=23.93 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 157 EAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 157 ~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
+.|++.|.+|+..+-.|+.||+.+.+.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999976554
No 52
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=26.56 E-value=2.2e+02 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=28.0
Q ss_pred HHhhccccccccccccccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017620 62 AVLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 119 (368)
Q Consensus 62 A~LSGfGAVs~Py~~~~~f~r~Vt--~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 119 (368)
++|+| |.|+| .|+ .+|+..+..+.++....+..-|.....++.++.+
T Consensus 15 ~LLaG--CAs~~---------kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 15 CLLSG--CVNEQ---------KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34665 66666 333 3467777777666666666666666666555443
No 53
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.19 E-value=2.1e+02 Score=21.45 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 154 KIMEAEVQALEELSKQLFLEIYELRQAKEAAA 185 (368)
Q Consensus 154 ~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 185 (368)
.+|++|+..++..-..+-.|..+++...++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555556666655555444
No 54
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=26.13 E-value=82 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHHH
Q 017620 84 IDESEIKALERQLMQS 99 (368)
Q Consensus 84 Vt~~dI~~~e~~l~~t 99 (368)
|||+||++-|++-..+
T Consensus 73 VT~eDIr~QE~rVk~a 88 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKA 88 (96)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888765
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=26.05 E-value=2.1e+02 Score=21.24 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
+.+..|+.++..|+.-...|-.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888887766543
No 56
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=25.60 E-value=76 Score=28.40 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHH
Q 017620 80 FIREIDESEIKALERQLMQSIE 101 (368)
Q Consensus 80 f~r~Vt~~dI~~~e~~l~~t~~ 101 (368)
..+..+|.|++++|+||.+|=+
T Consensus 124 ~~~~~~~~eL~qLq~rL~qTE~ 145 (152)
T PF15361_consen 124 TKRKITDYELAQLQERLAQTER 145 (152)
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 4567999999999999999943
No 57
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=25.38 E-value=2e+02 Score=26.97 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=59.5
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceecc----ccCcchhHhHHH
Q 017620 80 FIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS----VQDDQKEQDIKI 155 (368)
Q Consensus 80 f~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~ 155 (368)
..+..+..++..+|+.+..-..+=-.+|.+|+..- +- =-|.+..||.. |.....+.+...
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L-------gL---------~pRQVavWFQNRRARwK~kqlE~d~~~ 116 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL-------GL---------QPRQVAVWFQNRRARWKTKQLEKDYES 116 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhh-------CC---------ChhHHHHHHhhccccccchhhhhhHHH
Confidence 45678889999999888766444333444444321 10 00122224421 455566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 156 MEAEVQALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 156 L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
|+.+.+.|..-...|-.|+.+|+.+..+...
T Consensus 117 Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~ 147 (198)
T KOG0483|consen 117 LKRQLESLRSENDRLQSEVQELVAELSSLKR 147 (198)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999877765443
No 58
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=25.37 E-value=2.2e+02 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017620 245 AQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFA 278 (368)
Q Consensus 245 ~~~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~ 278 (368)
...+..++=|.++.++-+||+-.++.++..++.+
T Consensus 9 l~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy 42 (67)
T PF03376_consen 9 LPPFAVYLIFAFVTCTCICSIVCFVITFFQCIDY 42 (67)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999998887655
No 59
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=25.31 E-value=4.9e+02 Score=26.08 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=33.0
Q ss_pred ccchhhceehhhHHHHHHhhccccc-cccccccccccccCCHHHH---HHHHHHHH
Q 017620 46 IPQLVSRIGVIGVTVMAVLAGFGAV-NLPYSYLSLFIREIDESEI---KALERQLM 97 (368)
Q Consensus 46 ~e~~isRvgViGVt~mA~LSGfGAV-s~Py~~~~~f~r~Vt~~dI---~~~e~~l~ 97 (368)
|++.++++|.=-|+. |+=||+.=. ++.-+..+.|...|.+.|. +.++++|+
T Consensus 1 MD~lLak~~~QAvtf-AIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~ 55 (302)
T PF05508_consen 1 MDELLAKAGSQAVTF-AIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLE 55 (302)
T ss_pred ChHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467778888666665 888888633 3344556678888888864 34444444
No 60
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=4.8e+02 Score=23.10 Aligned_cols=100 Identities=12% Similarity=0.135 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-hhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHH
Q 017620 83 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSE-EKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 161 (368)
Q Consensus 83 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~ 161 (368)
|.++.-+...-.++++-+..|.+|=-+|..-.++...-...- +-++.+. -.|++|++. -+..-.+-+..|+.-.+
T Consensus 14 ~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RK-CfRmIgGvL---VErTVkeVlP~L~~nke 89 (140)
T KOG4098|consen 14 PSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRK-CFRMIGGVL---VERTVKEVLPILQTNKE 89 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhH-HHHHhccch---hhhhHHHHhHHHHhhHH
Confidence 455556667777777777777776655554444322211100 0111222 236766444 11122356789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 162 ALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 162 ~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
+++...+.|..+|.+...+....+.
T Consensus 90 ~i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 90 NIEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988776665543
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.64 E-value=1.2e+02 Score=35.22 Aligned_cols=61 Identities=8% Similarity=-0.133 Sum_probs=41.0
Q ss_pred CcccccchhhceehhhHHHHHHhhccccccccccccccccccCCHHHHHHHHHHHHHHHHH
Q 017620 42 GFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIET 102 (368)
Q Consensus 42 g~~~~e~~isRvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~Vt~~dI~~~e~~l~~t~~~ 102 (368)
+++..-...-+....+.++|++|.+||.+.=++.+...+-+.+.+....-.++.++|-..+
T Consensus 732 ~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~ 792 (1075)
T KOG2171|consen 732 AIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRM 792 (1075)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556778899999999999999999999877664444444444444444444333
No 62
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.52 E-value=2.2e+02 Score=24.52 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
+.++..++.|+..|+.-+..+..|+.+|-.+-+..
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999988887655444
No 63
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=23.29 E-value=69 Score=27.74 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHH
Q 017620 153 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNL 197 (368)
Q Consensus 153 i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~~~ 197 (368)
|-.++.+|+.|++=......|+..++.+.++.++..+-++||++.
T Consensus 46 ~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~a 90 (121)
T PF12507_consen 46 ILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYEA 90 (121)
T ss_pred HHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhhh
Confidence 446677777777777777777777777766666666666776653
No 64
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.90 E-value=5.4e+02 Score=27.39 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
++++.++..||+.=|++..+|+.++..+-....|..|
T Consensus 351 eqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y 387 (521)
T KOG1937|consen 351 EQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY 387 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH
Confidence 4455556667777788889999999888763333333
No 65
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=22.84 E-value=1.5e+02 Score=30.31 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=24.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 149 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 149 ~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
..++.+.|++|++-|+.+++.|=.-+..+++..+..
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~l 177 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLL 177 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999988877655555554444433
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.63 E-value=6.4e+02 Score=23.61 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHHHHHH
Q 017620 86 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 165 (368)
Q Consensus 86 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~~Le~ 165 (368)
+.++..++.++++..+.+.+.+.++...-.+... ....-.++-++|++|++.+++
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS-------------------------VINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhhhheeh
Q 017620 166 LSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSI 204 (368)
Q Consensus 166 l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~~~~g~~fsi 204 (368)
=.+.+-.++.+++...+..-+- .|=...+.|.++++
T Consensus 154 ~~~~l~~~~~~~~~~~~~~wf~---~Gg~v~~~GlllGl 189 (206)
T PRK10884 154 KVDAANLQLDDKQRTIIMQWFM---YGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HchHHHHHHHHHHH
No 67
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.98 E-value=4.9e+02 Score=25.35 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceec-cccCcchhHhHHHHHHHHHHHHH
Q 017620 87 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVR-SVQDDQKEQDIKIMEAEVQALEE 165 (368)
Q Consensus 87 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~~EI~~Le~ 165 (368)
..|.++.+++++..+-|..=+.+++..+.++.....+....... . ...-. +......+++|..=+.||..||.
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~----~--~~~~~~~~~~~~~de~I~rEeeEIreLE~ 253 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD----D--EESEESSEDSVDTDEDIRREEEEIRELER 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----c--cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 46888888888888887777777776665544321111000000 0 00000 00111235677777778887777
Q ss_pred HHHH
Q 017620 166 LSKQ 169 (368)
Q Consensus 166 l~~~ 169 (368)
-.++
T Consensus 254 k~~~ 257 (259)
T PF08657_consen 254 KKRE 257 (259)
T ss_pred HHHh
Confidence 6554
No 68
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.60 E-value=2.7e+02 Score=20.04 Aligned_cols=28 Identities=43% Similarity=0.439 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
.+..|+.++..|+.-..+|..++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457777888888877787777777764
No 69
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.39 E-value=2.7e+02 Score=25.61 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=20.7
Q ss_pred hHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQ---LFLEIYELRQAKEA 183 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~---L~~el~~L~~~~~~ 183 (368)
++||++|+.||+.||...+. |-.....|+.+.++
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877443 33344444444443
No 70
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.88 E-value=9e+02 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
+++.++..++..++.-.+.+-.++.+++.+.++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 566777777888887777778888888777665543
No 71
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=20.79 E-value=9e+02 Score=25.23 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017620 88 EIKALERQLMQSIETCIAKKKKIILCQMEMD 118 (368)
Q Consensus 88 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 118 (368)
++..+|+.+.+.-..|..-|.++..++.+.+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e 33 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYE 33 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666555556666677777776654
No 72
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.59 E-value=8.3e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017620 85 DESEIKALERQLMQSIETCIAKKKKIILCQMEM 117 (368)
Q Consensus 85 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 117 (368)
+..++.++..++.....-+..||+++...+.++
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666655443
No 73
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=20.50 E-value=97 Score=31.96 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=33.9
Q ss_pred hhCCCCC-CCCCCCCcccccchhhceehhhHHHHHHhhcccccc
Q 017620 29 RMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 71 (368)
Q Consensus 29 klG~~~p-~~s~~~g~~~~e~~isRvgViGVt~mA~LSGfGAVs 71 (368)
|-|..+| +.+++++.-.+++.+.|+.++|-.++|++++....-
T Consensus 327 k~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~ 370 (410)
T TIGR00967 327 KQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFL 370 (410)
T ss_pred HCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 444566566799999999999999999999876553
Done!