Query 017620
Match_columns 368
No_of_seqs 148 out of 167
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 86.3 1.5 5.2E-05 27.6 4.7 28 152-179 3-30 (33)
2 2zqm_A Prefoldin beta subunit 57.9 67 0.0023 25.3 9.3 53 133-185 55-111 (117)
3 3csx_A Putative uncharacterize 57.8 6.2 0.00021 30.7 2.6 33 148-180 12-44 (81)
4 2v71_A Nuclear distribution pr 55.7 1.1E+02 0.0038 27.2 11.1 30 152-181 89-118 (189)
5 3lay_A Zinc resistance-associa 54.0 1.1E+02 0.0039 26.7 11.4 35 147-184 109-143 (175)
6 2yy0_A C-MYC-binding protein; 51.1 24 0.00083 25.0 4.7 35 148-182 16-50 (53)
7 3ra3_B P2F; coiled coil domain 50.3 7.4 0.00025 23.6 1.5 14 151-164 14-27 (28)
8 2js5_A Uncharacterized protein 49.4 18 0.0006 27.5 3.9 54 151-213 3-56 (71)
9 2l5g_A GPS2 protein, G protein 45.4 21 0.00072 23.7 3.3 25 150-174 14-38 (38)
10 2wt7_A Proto-oncogene protein 41.1 58 0.002 23.5 5.6 33 151-183 23-55 (63)
11 1fmh_A General control protein 39.8 64 0.0022 20.2 4.6 28 152-179 2-29 (33)
12 4etp_A Kinesin-like protein KA 35.8 1.1E+02 0.0036 30.1 8.3 29 151-179 31-59 (403)
13 3tnu_B Keratin, type II cytosk 34.8 65 0.0022 26.4 5.6 32 152-183 44-75 (129)
14 1fxk_A Prefoldin; archaeal pro 34.5 1.6E+02 0.0053 22.7 8.9 48 133-180 50-101 (107)
15 2l2l_B Methyl-CPG-binding doma 33.8 49 0.0017 21.8 3.6 17 83-99 6-22 (36)
16 2jee_A YIIU; FTSZ, septum, coi 33.6 98 0.0034 23.9 6.0 29 151-179 20-48 (81)
17 3q8t_A Beclin-1; autophagy, AT 33.2 81 0.0028 24.8 5.7 32 151-182 4-35 (96)
18 3tnu_A Keratin, type I cytoske 33.1 71 0.0024 26.3 5.6 33 151-183 45-77 (131)
19 1t2k_D Cyclic-AMP-dependent tr 33.1 94 0.0032 22.1 5.6 33 151-183 22-54 (61)
20 4fi5_A Nucleoprotein; structur 32.9 2E+02 0.0069 23.5 8.8 81 88-192 23-103 (113)
21 1kd8_A GABH AIV, GCN4 acid bas 31.6 1.1E+02 0.0037 20.0 4.9 32 152-183 2-33 (36)
22 2aze_B Transcription factor E2 31.3 73 0.0025 25.6 5.2 36 151-186 6-41 (106)
23 2xdj_A Uncharacterized protein 30.4 1.1E+02 0.0036 23.6 5.7 30 152-181 28-57 (83)
24 2k48_A Nucleoprotein; viral pr 29.3 2.3E+02 0.0077 22.9 9.4 39 81-119 29-67 (107)
25 3na7_A HP0958; flagellar bioge 29.0 3E+02 0.01 24.8 9.7 31 151-181 90-120 (256)
26 1gd2_E Transcription factor PA 28.9 80 0.0028 23.6 4.7 33 150-182 28-60 (70)
27 1jnm_A Proto-oncogene C-JUN; B 28.1 1.2E+02 0.0041 21.6 5.4 32 151-182 22-53 (62)
28 3nmd_A CGMP dependent protein 25.7 1.5E+02 0.005 22.4 5.6 58 61-166 12-69 (72)
29 1go4_E MAD1 (mitotic arrest de 25.3 96 0.0033 24.9 4.8 85 83-170 8-94 (100)
30 3mq7_A Bone marrow stromal ant 25.0 2.9E+02 0.0099 22.7 9.5 32 151-182 71-102 (121)
31 2dgc_A Protein (GCN4); basic d 24.9 92 0.0032 22.6 4.3 31 151-181 30-60 (63)
32 1t3j_A Mitofusin 1; coiled coi 24.7 1.6E+02 0.0056 23.3 6.0 19 150-168 53-71 (96)
33 2jee_A YIIU; FTSZ, septum, coi 24.5 2.4E+02 0.0083 21.7 9.7 28 89-116 8-35 (81)
34 1ci6_A Transcription factor AT 24.4 1.5E+02 0.0052 21.3 5.4 31 152-182 24-54 (63)
35 3twe_A Alpha4H; unknown functi 23.8 78 0.0027 18.9 2.9 16 168-183 4-19 (27)
36 2k1a_A Integrin alpha-IIB; sin 22.9 76 0.0026 21.4 3.2 18 14-31 18-35 (42)
37 4g1a_A AQ-C16C19 peptide; heli 21.4 47 0.0016 20.6 1.7 15 152-166 1-15 (32)
38 1bb1_B Designed, thermostable 21.2 1E+02 0.0035 19.6 3.3 20 150-169 15-34 (36)
39 2l8s_A Integrin alpha-1; trans 21.2 59 0.002 23.3 2.4 18 14-31 17-34 (54)
40 1dh3_A Transcription factor CR 21.0 1.3E+02 0.0046 21.1 4.4 30 151-180 22-51 (55)
41 2knc_A Integrin alpha-IIB; tra 20.5 61 0.0021 23.1 2.4 18 14-31 20-37 (54)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.34 E-value=1.5 Score=27.57 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
||++|+|||.+|+.--..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788888988888766777777777664
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.93 E-value=67 Score=25.27 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=33.1
Q ss_pred hhhhhhceeccccCc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 133 FKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 185 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~----~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 185 (368)
.++.+|.+|-..+-+ .-+..+..++.+|+.|+.-...+-.++.+++....+..
T Consensus 55 vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 55 VYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666566332211 11355677777888888877788888888876665544
No 3
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=57.75 E-value=6.2 Score=30.71 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=25.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 148 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 180 (368)
Q Consensus 148 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 180 (368)
++++++.+|+.||.-|.....++-.+||+|-..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 445678999999999999999999999998654
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.73 E-value=1.1e+02 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
.++.|+.|+..|.....+|-..+.+|....
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577889999999999888888888877533
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=53.98 E-value=1.1e+02 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=24.1
Q ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 147 DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 184 (368)
Q Consensus 147 ~~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 184 (368)
+.+++.+++|..||..|.. ++..+-.+++.+.+..
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~---qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQ---KLDEQRVKRDVAMAQA 143 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3456778888888876665 7777777777665443
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.12 E-value=24 Score=24.99 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=29.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 148 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 148 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
++..+..+|++|.+.|+.=-..|-.++.+++++..
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567889999999999988888888888887654
No 7
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.29 E-value=7.4 Score=23.58 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALE 164 (368)
Q Consensus 151 ~~i~~L~~EI~~Le 164 (368)
++|++|+-||.+||
T Consensus 14 qeiaaleyeiaale 27 (28)
T 3ra3_B 14 QEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 45555666665554
No 8
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=49.44 E-value=18 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHhhhheehhhhHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKS 213 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~~~~g~~fsiYCvyKi~~t 213 (368)
+++.+|+.||.-|.....++-.+|++|-.. ++-.+-.++.+.=..|-+|+=...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 56 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED---------LPTGWNRIMEVAEKTYEAYRQLDE 56 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999998652 122233345555555555554443
No 9
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.40 E-value=21 Score=23.66 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEI 174 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el 174 (368)
.++|..|+.+.++|.+=+-|||.+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678899999999999999999864
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.12 E-value=58 Score=23.50 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
+.+..|+.|++.|+.-...|-.++..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999998888888888888776654
No 11
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=39.85 E-value=64 Score=20.17 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
+.++|+.|+..-|.-..||-.|+..|+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3567888888888888888888777653
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.83 E-value=1.1e+02 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
+++++++++...-|.+++.|++++.||+.
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567777788888999999999999874
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.77 E-value=65 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
.++.|+.|+++++.+...|=..+.+++.+.+.
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999888888887765543
No 14
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.48 E-value=1.6e+02 Score=22.67 Aligned_cols=48 Identities=10% Similarity=0.309 Sum_probs=24.9
Q ss_pred hhhhhhceeccccCc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 133 FKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 180 (368)
Q Consensus 133 ~~~~~~~~~~~~~~~----~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 180 (368)
.++.+|.+|-..+-+ .-+..+..++.+|+.|+.-...+-.++.+++..
T Consensus 50 vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 50 VYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666432211 012445555666666666555555566655543
No 15
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.78 E-value=49 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHHHHHHH
Q 017620 83 EIDESEIKALERQLMQS 99 (368)
Q Consensus 83 ~Vt~~dI~~~e~~l~~t 99 (368)
.|||.||.+-|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 58999999999777654
No 16
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.63 E-value=98 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQ 179 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 179 (368)
+.|.-|++||+.|+.=..+|..+..+++.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999988888887777443
No 17
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.24 E-value=81 Score=24.83 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
+++.+++.|+..|+.=+..+..+|.++...++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566777777777777777777766665443
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.11 E-value=71 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
..++.|+.||+++..+...|-..+.+++.+.+.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457889999999999999988888887765544
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.07 E-value=94 Score=22.08 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
+.+..|+.+++.|+.-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888776553
No 20
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.91 E-value=2e+02 Score=23.46 Aligned_cols=81 Identities=9% Similarity=0.093 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCcchhHhHHHHHHHHHHHHHHH
Q 017620 88 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 167 (368)
Q Consensus 88 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~EI~~Le~l~ 167 (368)
+|..+|..+.+.-..|..-|.+|..++...+..... .++ .-+..-+.++++||+--
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDe--vNK----------------------~tl~~R~~~Vs~lq~Ki 78 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDE--LNK----------------------RTLTDREGVAVSIQAKI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHH----------------------HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHH----------------------HHHHHHHHHHHHHHHHH
Confidence 466667666666666667777777777665431100 111 01223456888888887
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Q 017620 168 KQLFLEIYELRQAKEAAAYSRTWRG 192 (368)
Q Consensus 168 ~~L~~el~~L~~~~~~~~~s~T~~G 192 (368)
.+|-..|.+.....+.....+-+.|
T Consensus 79 aeLKrqLAd~va~~k~~~k~~DPTG 103 (113)
T 4fi5_A 79 DELKRQLADRIATGKNLGKEQDPTG 103 (113)
T ss_dssp HHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcccccCCCCCCC
Confidence 7777778777665444444344444
No 21
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.58 E-value=1.1e+02 Score=20.04 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 183 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 183 (368)
.+++|+.+++.|..=...|-.|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35688888888888888888888888766543
No 22
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.26 E-value=73 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
.++..|++|++.|+..++.|=.-+..+++..+....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356789999999999998887777776665555443
No 23
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=30.41 E-value=1.1e+02 Score=23.64 Aligned_cols=30 Identities=3% Similarity=0.151 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
++..|+.||..|.-.-..+-.++..+++++
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554433
No 24
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.33 E-value=2.3e+02 Score=22.93 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=31.9
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017620 81 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 119 (368)
Q Consensus 81 ~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 119 (368)
+-|.|-+||..+|+.+.+.-..|..-|.++..++..++.
T Consensus 29 ~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~ 67 (107)
T 2k48_A 29 IDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEV 67 (107)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 347778999999999999888888888888888876553
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.96 E-value=3e+02 Score=24.78 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
.+..+|+.||+.++.-...+-.++.++..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777766665555555555544433
No 26
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.88 E-value=80 Score=23.58 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=24.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
++.|+.|+.++..||....++-.|...|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999998888887777766665443
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.12 E-value=1.2e+02 Score=21.64 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
+.+..|+.+++.|+.-...|-.++..|+.+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888898888888888888888877654
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.67 E-value=1.5e+02 Score=22.43 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHhhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhce
Q 017620 61 MAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV 140 (368)
Q Consensus 61 mA~LSGfGAVs~Py~~~~~f~r~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (368)
||..-|.|. |..+|..+..-.+-|..|-.+++.++.+....
T Consensus 12 ~~~~~~mgt-------------------i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek-------------------- 52 (72)
T 3nmd_A 12 MASIEGRGS-------------------LRDLQYALQEKIEELRQRDALIDELELELDQK-------------------- 52 (72)
T ss_dssp -------CH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred hhhcccCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred eccccCcchhHhHHHHHHHHHHHHHH
Q 017620 141 VRSVQDDQKEQDIKIMEAEVQALEEL 166 (368)
Q Consensus 141 ~~~~~~~~~~~~i~~L~~EI~~Le~l 166 (368)
+++|+.|+.|++-++++
T Consensus 53 ---------d~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 53 ---------DELIQMLQNELDKYRSV 69 (72)
T ss_dssp ---------HHHHHHHHHHHHHTTTT
T ss_pred ---------HHHHHHHHHHHHHhhcc
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.33 E-value=96 Score=24.85 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCc--chhHhHHHHHHHH
Q 017620 83 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD--QKEQDIKIMEAEV 160 (368)
Q Consensus 83 ~Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~L~~EI 160 (368)
|+|..++..+.+.++..-.--..=|++++.++.++...--.+.-+.... ||++=.--+.... ...+++..|++|+
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~T---KVlH~~~NPa~~a~~~~~~~~e~Lq~E~ 84 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRT---KVLHMSLNPTSVARQRLREDHSQLQAEC 84 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTE---EEEEESSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccC---eeeeecCChHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 017620 161 QALEELSKQL 170 (368)
Q Consensus 161 ~~Le~l~~~L 170 (368)
+.|...-+.|
T Consensus 85 erLr~~v~~l 94 (100)
T 1go4_E 85 ERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.96 E-value=2.9e+02 Score=22.73 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
+.+++|+.||..|..-=+....|+..|+...+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 45788999998888876666777777765544
No 31
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.89 E-value=92 Score=22.58 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 181 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 181 (368)
+.+..|+.+++.|+.-...|-.++..|+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999998888888888887654
No 32
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.74 E-value=1.6e+02 Score=23.33 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=12.6
Q ss_pred hHhHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSK 168 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~ 168 (368)
++||++|++||..||.+.+
T Consensus 53 ~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777776643
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.51 E-value=2.4e+02 Score=21.66 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017620 89 IKALERQLMQSIETCIAKKKKIILCQME 116 (368)
Q Consensus 89 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 116 (368)
...+|.+..+++|.|.--+-++..++.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKek 35 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEK 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899888877766666666644
No 34
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.36 E-value=1.5e+02 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
.+..|+.|++.|+.-..+|-.++..|+.+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777766544
No 35
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.76 E-value=78 Score=18.94 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 017620 168 KQLFLEIYELRQAKEA 183 (368)
Q Consensus 168 ~~L~~el~~L~~~~~~ 183 (368)
.+||.|+.+|+.+.+.
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888766543
No 36
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.91 E-value=76 Score=21.45 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 017620 14 LGAILFLLAFLYAFWRMG 31 (368)
Q Consensus 14 ~~~~~~~~~~l~~FwklG 31 (368)
++..++++.-.++.||+|
T Consensus 18 l~GLllL~li~~~LwK~G 35 (42)
T 2k1a_A 18 LGGLLLLTILVLAMWKVG 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 345557777889999998
No 37
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.40 E-value=47 Score=20.64 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHH
Q 017620 152 DIKIMEAEVQALEEL 166 (368)
Q Consensus 152 ~i~~L~~EI~~Le~l 166 (368)
+|++|++.|.+||.-
T Consensus 1 qiaaleqkiaaleqk 15 (32)
T 4g1a_A 1 QIAALEQKIAALEQK 15 (32)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 356788888888764
No 38
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.22 E-value=1e+02 Score=19.58 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.3
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQ 169 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~ 169 (368)
+++|++.+.||.+++.+-.|
T Consensus 15 eeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 15 EEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46777778888887776554
No 39
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.18 E-value=59 Score=23.28 Aligned_cols=18 Identities=28% Similarity=0.973 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 017620 14 LGAILFLLAFLYAFWRMG 31 (368)
Q Consensus 14 ~~~~~~~~~~l~~FwklG 31 (368)
++..+++++-.|+.||+|
T Consensus 17 l~GLLLL~Lii~~LwK~G 34 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIG 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 344557777789999998
No 40
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.00 E-value=1.3e+02 Score=21.10 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 151 QDIKIMEAEVQALEELSKQLFLEIYELRQA 180 (368)
Q Consensus 151 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 180 (368)
+.+..|+.++..|+.-...|..++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999888888888887653
No 41
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.54 E-value=61 Score=23.14 Aligned_cols=18 Identities=39% Similarity=1.012 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 017620 14 LGAILFLLAFLYAFWRMG 31 (368)
Q Consensus 14 ~~~~~~~~~~l~~FwklG 31 (368)
++.++++++-.|+.||+|
T Consensus 20 l~GLllL~li~~~LwK~G 37 (54)
T 2knc_A 20 LGGLLLLTILVLAMWKVG 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 344556777788999999
Done!