Query 017620
Match_columns 368
No_of_seqs 148 out of 167
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 17:23:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017620.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017620hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 41.2 67 0.0048 28.9 10.1 32 87-118 6-39 (362)
2 d2azeb1 e.63.1.2 (B:201-301) T 28.6 46 0.0033 24.7 5.4 28 153-180 3-30 (101)
3 d2hgsa4 d.142.1.6 (A:3-201,A:3 23.9 2.4 0.00017 39.6 -3.7 32 44-75 313-369 (370)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 20.2 1.5E+02 0.011 21.3 10.4 87 96-182 13-103 (107)
5 d2azeb1 e.63.1.2 (B:201-301) T 17.2 94 0.0069 22.8 5.1 37 150-186 7-43 (101)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 15.5 1.4E+02 0.01 20.7 5.6 33 150-182 51-83 (88)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 15.2 1.4E+02 0.01 20.2 5.4 33 150-182 46-78 (79)
8 d1io1a_ e.32.1.1 (A:) Phase 1 14.3 1.7E+02 0.013 23.9 6.9 32 150-195 50-81 (395)
9 d1ydxa2 d.287.1.2 (A:194-374) 14.2 77 0.0056 23.9 4.1 16 163-178 151-166 (181)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 13.1 27 0.0019 21.0 0.6 22 48-69 11-32 (34)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=41.21 E-value=67 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh
Q 017620 87 SEIKALERQLMQSIE--TCIAKKKKIILCQMEMD 118 (368)
Q Consensus 87 ~dI~~~e~~l~~t~~--~l~~Kk~rl~~~~~~~~ 118 (368)
.+|+.+.+++..... .+..||+|+..++.+++
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~ls 39 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELE 39 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc
Confidence 456777777666554 35778889999987765
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.60 E-value=46 Score=24.69 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 153 IKIMEAEVQALEELSKQLFLEIYELRQA 180 (368)
Q Consensus 153 i~~L~~EI~~Le~l~~~L~~el~~L~~~ 180 (368)
+..|++|++.|+..++.|=.-+..+.+.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~ 30 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQ 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667766666666654444444433
No 3
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.91 E-value=2.4 Score=39.57 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=27.1
Q ss_pred ccccchhhceehhhHHH-------------------------HHHhhcccccccccc
Q 017620 44 FTIPQLVSRIGVIGVTV-------------------------MAVLAGFGAVNLPYS 75 (368)
Q Consensus 44 ~~~e~~isRvgViGVt~-------------------------mA~LSGfGAVs~Py~ 75 (368)
..++++||.+||-|+.+ .++-+|||++.+||=
T Consensus 313 ~~~~~~iSElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpyl 369 (370)
T d2hgsa4 313 ARVVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYP 369 (370)
T ss_dssp CEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEE
T ss_pred eeeccccccccccEEEEeCCCEEEEeccceEEEecCCCCCCCCCeecceecccCccc
Confidence 34689999999999875 578899999999983
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.17 E-value=1.5e+02 Score=21.33 Aligned_cols=87 Identities=10% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhchhhhhhhceeccccCc----chhHhHHHHHHHHHHHHHHHHHHH
Q 017620 96 LMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDD----QKEQDIKIMEAEVQALEELSKQLF 171 (368)
Q Consensus 96 l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~L~~EI~~Le~l~~~L~ 171 (368)
+.+.+..+.+++.++.....++......-...++..-..|.+|+++-.-..+ .-...+..++.+|+.|+.-...+-
T Consensus 13 lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~ 92 (107)
T d1fxka_ 13 LQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555443333222111111122334556666565331110 012445666667777777666666
Q ss_pred HHHHHHHHHHH
Q 017620 172 LEIYELRQAKE 182 (368)
Q Consensus 172 ~el~~L~~~~~ 182 (368)
.++.+++...+
T Consensus 93 ~~l~~~~~~l~ 103 (107)
T d1fxka_ 93 KKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665443
No 5
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.15 E-value=94 Score=22.82 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=30.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 186 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 186 (368)
.+|+..|++|-+.|..+.+.+-.+|.++....+..++
T Consensus 7 ~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ 43 (101)
T d2azeb1 7 TQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccC
Confidence 4688999999999999999999999998866555544
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.50 E-value=1.4e+02 Score=20.69 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=24.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
.+.|+.|+.+++.|+.-..+|-.+...|..+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887777777777766666554
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.23 E-value=1.4e+02 Score=20.24 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 182 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 182 (368)
.+.|+.|+.++..++.-..+|..+..+|+.+.+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888888888877888877777776543
No 8
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=14.35 E-value=1.7e+02 Score=23.94 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=19.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHH
Q 017620 150 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQ 195 (368)
Q Consensus 150 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~Gr~~ 195 (368)
.++.+.++.||+.|.+ +..|.....++-|+.+
T Consensus 50 ~~dr~ai~~E~~~l~~--------------ei~~ia~~T~fng~~L 81 (395)
T d1io1a_ 50 QSDLDSIQAEITQRLN--------------EIDRVSGQTQFNGVKV 81 (395)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHCCBTTBCT
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHhCeeCCccc
Confidence 4566777777765543 4555555566777653
No 9
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=14.22 E-value=77 Score=23.92 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 017620 163 LEELSKQLFLEIYELR 178 (368)
Q Consensus 163 Le~l~~~L~~el~~L~ 178 (368)
++++-..+-.++.+++
T Consensus 151 ~d~~i~~~~~~i~~l~ 166 (181)
T d1ydxa2 151 LDQKLDQYKKELSSLT 166 (181)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.11 E-value=27 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.5
Q ss_pred chhhceehhhHHHHHHhhcccc
Q 017620 48 QLVSRIGVIGVTVMAVLAGFGA 69 (368)
Q Consensus 48 ~~isRvgViGVt~mA~LSGfGA 69 (368)
..+.-|+|+|+.+-+.-||.|+
T Consensus 11 ~G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTS
T ss_pred hhhhhHhheeeeeeeeeccccc
Confidence 4456678888888888898886
Done!