BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017622
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4R|A Chain A, Crystal Structure Of The Dog Lipocalin Allergen Can F 2
And Implications For Cross-Reactivity To The Cat
Allergen Fel D 4
Length = 170
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 308 KPDAKSPWGNYFAFLHSLSVTIVSYMGKLRIAVVGEDGFIDSHKLKSSIENAFEM 362
K D PWG++ F+HS+S + G + I G+ + K++ N F++
Sbjct: 28 KSDLIKPWGHFRVFIHSMSAKDGNLHGDILIPQDGQCEKVSLTAFKTATSNKFDL 82
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 123 HIIKYPTS--HAAGFLIFKLHHSLGD------GF------SLMGALLSCLQRADDPSVPL 168
H+ Y S + G F+L H GD GF +L G L+S +Q + DP V
Sbjct: 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545
Query: 169 TFPSVNRFPSNKKDGNNSNIFSN 191
FP S K+ + F N
Sbjct: 546 LFPPTRPEDSKKRPETAGSQFRN 568
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 123 HIIKYPTS--HAAGFLIFKLHHSLGD------GF------SLMGALLSCLQRADDPSVPL 168
H+ Y S + G F+L H GD GF +L G L+S +Q + DP V
Sbjct: 486 HLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545
Query: 169 TFPSVNRFPSNKKDGNNSNIFSN 191
FP S K+ + F N
Sbjct: 546 LFPPTRPEDSKKRPETAGSQFRN 568
>pdb|1QO5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|E Chain E, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|F Chain F, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|G Chain G, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|H Chain H, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|I Chain I, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|J Chain J, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|K Chain K, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|L Chain L, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|M Chain M, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|N Chain N, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|O Chain O, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|P Chain P, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|Q Chain Q, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
pdb|1QO5|R Chain R, Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
Length = 363
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 226 GDDGIEFRPVSVATTAFSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQE 276
G G + + V T + Q ++I VD+++N I G+I LY ++
Sbjct: 37 GTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFHETLYQKD 87
>pdb|1XDL|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDL|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 277k
pdb|1XDM|A Chain A, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|B Chain B, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|C Chain C, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|D Chain D, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|W Chain W, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|X Chain X, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Y Chain Y, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
pdb|1XDM|Z Chain Z, Structure Of Human Aldolase B Associated With Hereditary
Fructose Intolerance (A149p), At 291k
Length = 365
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 226 GDDGIEFRPVSVATTAFSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQE 276
G G + + V T + Q ++I VD+++N I G+I LY ++
Sbjct: 39 GTMGNRLQRIKVENTEENRRQFREILFSVDSSINQSIGGVILFHETLYQKD 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,773,527
Number of Sequences: 62578
Number of extensions: 445624
Number of successful extensions: 887
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 9
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)