Query 017622
Match_columns 368
No_of_seqs 191 out of 1143
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l5a_A Amide synthase, VIBH; n 99.8 6.7E-18 2.3E-22 166.4 27.2 243 12-297 1-265 (436)
2 2jgp_A Tyrocidine synthetase 3 99.8 2.1E-17 7.1E-22 167.0 29.0 321 7-365 94-508 (520)
3 1q9j_A PAPA5, polyketide synth 99.8 4.7E-18 1.6E-22 166.5 18.8 245 6-297 4-271 (422)
4 2vsq_A Surfactin synthetase su 99.8 5.8E-17 2E-21 180.7 25.6 257 7-297 10-286 (1304)
5 2xhg_A Tyrocidine synthetase A 99.7 6E-16 2E-20 153.7 26.0 257 5-297 13-292 (466)
6 4hvm_A Tlmii; PSI-biology, mid 99.7 2.1E-16 7.1E-21 158.6 18.4 142 6-157 10-157 (493)
7 3fot_A 15-O-acetyltransferase; 98.6 1.3E-05 4.5E-10 80.7 26.4 56 240-296 282-343 (519)
8 2bgh_A Vinorine synthase; VS, 97.1 0.026 9E-07 54.9 18.3 231 9-296 25-280 (421)
9 4g22_A Hydroxycinnamoyl-COA sh 96.8 0.087 3E-06 51.5 18.7 129 9-157 26-173 (439)
10 2xr7_A Malonyltransferase; xen 95.7 0.65 2.2E-05 45.3 18.5 57 240-296 243-308 (453)
11 2rkv_A Trichothecene 3-O-acety 93.4 0.9 3.1E-05 44.2 13.0 58 237-296 231-297 (451)
12 2e1v_A Acyl transferase; BAHD 89.3 0.49 1.7E-05 46.2 6.2 52 238-296 247-306 (454)
13 1baz_A ARC repressor; transcri 58.1 15 0.0005 24.3 4.3 32 240-271 12-46 (53)
14 3qoq_A Alginate and motility r 54.3 17 0.00059 25.6 4.3 28 244-271 31-58 (69)
15 2i9d_A Chloramphenicol acetylt 51.0 13 0.00043 32.5 3.9 38 237-274 31-68 (217)
16 1nla_A Transcriptional repress 50.7 22 0.00075 24.7 4.3 29 245-273 20-48 (64)
17 2gpe_A Bifunctional protein PU 47.6 32 0.0011 22.1 4.7 34 242-279 13-46 (52)
18 1q23_A Chloramphenicol acetylt 46.1 11 0.00038 32.8 2.8 38 237-274 34-71 (219)
19 3cla_A Type III chloramphenico 43.8 12 0.00041 32.5 2.6 38 237-274 29-66 (213)
20 1p94_A Plasmid partition prote 40.4 34 0.0012 24.5 4.1 34 240-277 39-75 (76)
21 2an7_A Protein PARD; bacterial 39.6 19 0.00065 26.1 2.6 22 245-266 14-35 (83)
22 2ay0_A Bifunctional PUTA prote 36.0 51 0.0017 22.1 4.3 31 243-277 14-44 (58)
23 2bsq_E FITA, trafficking prote 34.6 48 0.0016 23.8 4.1 27 245-271 14-40 (77)
24 2k9i_A Plasmid PRN1, complete 33.7 62 0.0021 20.7 4.4 35 240-278 14-51 (55)
25 2hue_C Histone H4; mini beta s 32.8 36 0.0012 24.7 3.3 37 241-277 10-47 (84)
26 3rqc_A Probable lipoamide acyl 32.4 48 0.0017 28.8 4.7 39 237-275 33-76 (224)
27 1taf_B TFIID TBP associated fa 30.7 73 0.0025 22.4 4.5 38 240-277 5-43 (70)
28 1id3_B Histone H4; nucleosome 28.5 46 0.0016 25.2 3.3 38 240-277 27-65 (102)
29 1u9p_A PARC; unknown function; 27.6 66 0.0023 25.2 4.1 32 240-271 23-57 (120)
30 1y9b_A Conserved hypothetical 26.6 1.1E+02 0.0038 22.4 5.1 33 245-277 18-51 (90)
31 2kel_A SVTR protein, uncharact 25.3 1.1E+02 0.0036 20.4 4.3 29 245-277 26-54 (56)
32 2e1v_A Acyl transferase; BAHD 24.5 2.8E+02 0.0094 26.3 9.0 37 118-156 148-184 (454)
33 3qq6_A HTH-type transcriptiona 23.6 50 0.0017 23.0 2.6 22 241-262 50-71 (78)
34 3b8k_A PDCE2;, dihydrolipoylly 23.3 55 0.0019 28.7 3.4 56 239-294 41-109 (239)
35 3l60_A Branched-chain alpha-ke 22.7 70 0.0024 28.3 4.0 39 237-275 41-84 (250)
36 3t76_A VANU, transcriptional r 22.4 26 0.00088 25.6 0.8 21 242-262 63-83 (88)
37 1scz_A E2, dihydrolipoamide su 21.9 75 0.0026 27.7 3.9 37 238-274 32-78 (233)
38 1xl7_A COT, peroxisomal carnit 21.5 1.6E+02 0.0056 29.6 6.8 43 324-366 562-606 (612)
39 1mnt_A MNT repressor; transcri 21.3 78 0.0027 22.5 3.2 27 245-271 17-43 (76)
40 1t1u_A Choline O-acetyltransfe 21.3 1.5E+02 0.0051 30.1 6.5 43 324-366 568-612 (639)
41 1nm8_A Carnitine O-acetyltrans 20.8 1.5E+02 0.0053 29.8 6.5 42 324-365 552-595 (616)
42 3s8q_A R-M controller protein; 20.8 66 0.0022 22.3 2.8 24 241-264 50-73 (82)
43 2l02_A Uncharacterized protein 20.4 64 0.0022 23.5 2.6 26 247-278 25-50 (82)
44 2ii3_A Lipoamide acyltransfera 20.2 84 0.0029 28.0 3.9 37 238-274 58-103 (262)
45 3cla_A Type III chloramphenico 20.1 47 0.0016 28.6 2.2 23 135-157 182-204 (213)
No 1
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=99.81 E-value=6.7e-18 Score=166.38 Aligned_cols=243 Identities=9% Similarity=-0.046 Sum_probs=151.1
Q ss_pred CCcccc--cc---cCC-CCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceeeecccccCCcEEe
Q 017622 12 VSPSGQ--YL---NSS-ALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWKRVEVKLRNHVKV 85 (368)
Q Consensus 12 ls~~~~--~~---~~~-~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~~~~~d~~~Hv~~ 85 (368)
|||.|+ |+ ..| ...+++..++.++|++|.+.|++++.. .+.+||.||.++...+ | ++.+..++..++
T Consensus 1 Ls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~A~~~-lv~rh~~LRt~f~~~~-~---~v~~~~~~~~~~-- 73 (436)
T 1l5a_A 1 MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHL-TVSEIDLFRARFSAQG-E---LYWHPFSPPIDY-- 73 (436)
T ss_dssp CCGGGHHHHHHHHHSTTSCCSEEEEEEEEESSCCHHHHHHHHHH-HHHTCGGGGEEECTTC-C---EEECSSCCCCEE--
T ss_pred CCHHHHHHHHHHHcCCCCCccceeEEEEEeCCCCHHHHHHHHHH-HHHHhheeEEEEEecC-C---eECCCcCCCccE--
Confidence 688888 32 234 455999999999999999999999987 7889999999997543 3 554333333333
Q ss_pred ecCCCCCCccchHHHHHHHHHHHhcCCCCCCC-CCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHhh---cCC
Q 017622 86 PIFPSGLSPEAYDKYFDDYISEIGMELFPQSQ-PLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSCL---QRA 161 (368)
Q Consensus 86 ~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~~-PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l~---~~~ 161 (368)
..+.... +.++++.+++.+...+|||..+ |+|++.+++.- ++ ++.+++.+||+++||+|..-++..+. ...
T Consensus 74 ~d~~~~~---~~~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~-~~-~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~ 148 (436)
T 1l5a_A 74 QDLSIHL---EAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLS-HS-EHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSL 148 (436)
T ss_dssp EECTTCT---THHHHHHHHHHHHHTSCCCCBTSCSCEEEEEEEE-TT-EEEEEEEEETTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCC---CHHHHHHHHHHHHhcCCCCcCCCCCeEEEEEEEc-CC-EEEEEEeehhheecHhHHHHHHHHHHHHHHHH
Confidence 3333222 1456789999999999999975 99999999742 33 78999999999999999865554433 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHHH--------HHHHHHHHHHHHHHHHHhhcC-CCCCCCccCCCCCCc
Q 017622 162 DDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKTF--------CVVSETVSDFCWSFVKSAWLQ-DDRTPIYSGDDGIEF 232 (368)
Q Consensus 162 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 232 (368)
...... ..+ . ..+.++..+..... ...|.. .+.. .+...++ .+.....
T Consensus 149 ~~g~~~-~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~W~~-----------~l~~~~~~~~lp-~~~~~~~ 205 (436)
T 1l5a_A 149 LSGQTP-TAA--F--------KPYQSYLEEEAAYLTSHRYWQDKQFWQG-----------YLREAPDLTLTS-ATYDPQL 205 (436)
T ss_dssp HHTCCC-CCC--C--------CCHHHHHHHHHHHHTSHHHHHHHHHHHH-----------HHHTSCCCCBCC-TTCCGGG
T ss_pred hcCCCC-CCC--c--------cCHHHHHHHHHHhhccHhHHHHHHHHHH-----------HhcCCCCcccCC-CCCCCCc
Confidence 001110 000 0 01333332211111 111211 1111 1112222 1111111
Q ss_pred cceEEEEEeeC---HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCCC
Q 017622 233 RPVSVATTAFS---LDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRAF 297 (368)
Q Consensus 233 ~~r~~~~~~~~---l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~~ 297 (368)
.........++ .+.++++++++|+|+|++++|+++.+|++|.. ..+...+|++.|..
T Consensus 206 ~~~~~~~~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~L~~~~g--------~dv~ig~~~~~R~~ 265 (436)
T 1l5a_A 206 SHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEP--------DAPWLWLPFMNRWG 265 (436)
T ss_dssp CCEEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHST--------TCCEEEEEECCCTT
T ss_pred ccceeeEEecCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhC--------CceEEeeecccCCC
Confidence 11111223455 45788899999999999999999999999942 34777788888763
No 2
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=99.80 E-value=2.1e-17 Score=166.99 Aligned_cols=321 Identities=12% Similarity=0.114 Sum_probs=193.6
Q ss_pred cccCCCCccccc--c----cCCCCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceeee-ccccc
Q 017622 7 EETEPVSPSGQY--L----NSSALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWKR-VEVKL 79 (368)
Q Consensus 7 ~~~~pls~~~~~--~----~~~~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~~-~~~d~ 79 (368)
+..+||||.|+. + ......+++...+.++|++|.+.|++++.. .+.+||.||.++...+ |.|+|+- ++.++
T Consensus 94 ~~~~pls~~Q~~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~l~~A~~~-lv~rh~~LRt~f~~~~-~~~~q~v~~~~~~ 171 (520)
T 2jgp_A 94 QAYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKLERTRVEAAFQR-LIARHESLRTSFAVVN-GEPVQNIHEDVPF 171 (520)
T ss_dssp CSSEECCHHHHHHHHHHHHTCCTTTTBCCEEEEEEECCCHHHHHHHHHH-HHHHCGGGGEEEEEET-TEEEEEECSCCCC
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCcccceEEEEECCCCCHHHHHHHHHH-HHHHhHhheeEEEeeC-CEEEEEECCCCCC
Confidence 357899999983 2 234456889999999999999999999988 7889999999997643 6777763 54444
Q ss_pred CCcEEeecCCCCCCccchHHHHHHHHHHHhcCCCCCC-CCCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHhh
Q 017622 80 RNHVKVPIFPSGLSPEAYDKYFDDYISEIGMELFPQS-QPLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSCL 158 (368)
Q Consensus 80 ~~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~-~PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l~ 158 (368)
..++ ..+. ++++.+ +.+...+|||.. .|+|++.+++.- ++ ++.+++.+||+++||+|..-++..+.
T Consensus 172 ~~~~--~~~~--------~~~~~~-~~~~~~~~fdl~~~pl~r~~l~~~~-~~-~~~l~~~~HH~i~Dg~S~~~l~~el~ 238 (520)
T 2jgp_A 172 ALAY--SEVT--------EEEARE-LVSSLVQPFDLEVAPLIRVSLLKIG-ED-RYVLFTDMHHSISDGVSSGILLAEWV 238 (520)
T ss_dssp CCEE--EECC--------HHHHHH-HHHHTCCCCCTTSSCCEEEEEEEEE-TT-EEEEEEEEBGGGCCHHHHHHHHHHHH
T ss_pred ceEE--EeCC--------HHHHHH-HHHHhcCCCCCCCCcceeEEEEEEc-CC-cEEEEEEccceeecHhHHHHHHHHHH
Confidence 3332 2221 245555 667789999997 599999999852 33 78999999999999999865554433
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHHHH-HHHHHHHHHHHHHHHHhhcCC-CCCCCcc--CCCCCCccc
Q 017622 159 QRADDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKTFC-VVSETVSDFCWSFVKSAWLQD-DRTPIYS--GDDGIEFRP 234 (368)
Q Consensus 159 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~ 234 (368)
..-.... .|.. .. .+.++..+...... ...... ....+..+... +..+++. ..+......
T Consensus 239 ~~Y~~~~----l~~~-----~~---~~~d~~~~~~~~~~~~~~~~~----~~yW~~~l~~~~~~~~lp~~~~~~~~~~~~ 302 (520)
T 2jgp_A 239 QLYQGDV----LPEL-----RI---QYKDFAVWQQEFSQSAAFHKQ----EAYWLQTFADDIPVLNLPTDFTRPSTQSFA 302 (520)
T ss_dssp HHHTTCC----CCCC-----SC---CHHHHHHHHHHHTTSHHHHHH----HHHHHHHTSSCCCCCCCCCSSCCCSSCCCB
T ss_pred HHHccCC----CCCC-----CC---CHHHHHHHHHHhhcChhhHHH----HHHHHHHhCCCCCcCCCCCCCCCCCCCCCC
Confidence 2101111 1100 00 13444433222110 000000 00011111111 1112221 111111111
Q ss_pred eEEEEEeeC---HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCCCccc-----------
Q 017622 235 VSVATTAFS---LDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRAFRSY----------- 300 (368)
Q Consensus 235 r~~~~~~~~---l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~~~~~----------- 300 (368)
.......++ .+.++++|+++|+|+|+|++|+++.+|++|... ..+...+|++-|...+.
T Consensus 303 ~~~~~~~l~~~~~~~l~~~a~~~~~T~~~~l~aa~a~~L~~~~~~-------~dv~~g~~~~gR~~~~~~~~vG~f~n~l 375 (520)
T 2jgp_A 303 GDQCTIGAGKALTEGLHQLAQATGTTLYMVLLAAYNVLLAKYAGQ-------EDIIVGTPITGRSHADLEPIVGMFVNTL 375 (520)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTC-------SCEEEEEEECCCCSGGGTTCCSCCCEEE
T ss_pred ccEEEEeCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------CCeEEEeccCCCCchhhhccEEeeeeee
Confidence 122234455 567899999999999999999999999999632 45778888888864220
Q ss_pred ----------------hhHh----hh--------------cCCC---CCCCc-----------------cc-hh------
Q 017622 301 ----------------ESVK----DM--------------VKPD---AKSPW-----------------GN-YF------ 319 (368)
Q Consensus 301 ----------------~~~~----~~--------------~~~~---~~~~~-----------------~n-~~------ 319 (368)
+.++ +. .... ...++ ++ .+
T Consensus 376 plr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
T 2jgp_A 376 AMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTD 455 (520)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSSCSEEEEEECCCCSCCCCSSEEEEECSSC
T ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCcEEEEEEEecCCCccccCCCceeEEeecC
Confidence 0010 00 0000 00000 00 00
Q ss_pred ----hhhhheeEEEEEeCCeEEEEEeecCCCC---CHHHHHHHHHHHHHHHHh
Q 017622 320 ----AFLHSLSVTIVSYMGKLRIAVVGEDGFI---DSHKLKSSIENAFEMMLN 365 (368)
Q Consensus 320 ----~~~~~L~it~~Sy~g~l~~g~~ad~~~~---d~~~l~~~~~~al~eL~~ 365 (368)
..-+.|.+.+..++|.+.+.+..+.++. ..+.+.+.+...++++.+
T Consensus 456 ~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~ 508 (520)
T 2jgp_A 456 ETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQ 508 (520)
T ss_dssp SSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 0111578888899999999999998874 577888888888888754
No 3
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=99.78 E-value=4.7e-18 Score=166.48 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=141.0
Q ss_pred ccccCCCCcccccc-cCCCCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceee-ecccccCCcE
Q 017622 6 AEETEPVSPSGQYL-NSSALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWK-RVEVKLRNHV 83 (368)
Q Consensus 6 ~~~~~pls~~~~~~-~~~~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~-~~~~d~~~Hv 83 (368)
.+..+||||.|+.+ ..+ +++..++.++|++|.+.|++++.. .+.+||.||.++.... +.++++ .+..+.. ++
T Consensus 4 ~~~~~pls~~Q~~~~~~~---y~~~~~~~l~g~ld~~~l~~A~~~-lv~rh~~LRt~f~~~~-~~~~q~v~~~~~~~-~~ 77 (422)
T 1q9j_A 4 GSVIRKLSHSEEVFAQYE---VFTSMTIQLRGVIDVDALSDAFDA-LLETHPVLASHLEQSS-DGGWNLVADDLLHS-GI 77 (422)
T ss_dssp TSEEEECCHHHHHHHHTT---CEEEEEEEEESCCCHHHHHHHHHH-HHHHCGGGSEEEEECT-TSSEEEEECCSSSC-CC
T ss_pred CceeecCCHHHHHHHhcC---ceEEEEEEEecCCCHHHHHHHHHH-HHHhCccceEEEEecC-CcceeeeccCCCCC-ce
Confidence 45679999999954 332 999999999999999999999988 7889999999997644 445333 3443332 24
Q ss_pred EeecCCCCCCccchHHHHHHHHHHHhcCCCCCCCCCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHh---hcC
Q 017622 84 KVPIFPSGLSPEAYDKYFDDYISEIGMELFPQSQPLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSC---LQR 160 (368)
Q Consensus 84 ~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~~PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l---~~~ 160 (368)
....+.... ..+++. + ...+||...|+|++.+++ .++ ++.+++.+||+++||+|...++..+ +..
T Consensus 78 ~~~d~~~~~----~~~~~~----~-~~~~~d~~~pl~r~~l~~--~~~-~~~l~l~~hH~i~Dg~S~~~l~~~l~~~Y~~ 145 (422)
T 1q9j_A 78 CVIDGTAAT----NGSPSG----N-AELRLDQSVSLLHLQLIL--REG-GAELTLYLHHCMADGHHGAVLVDELFSRYTD 145 (422)
T ss_dssp EEEC---------------------CCCCCCTTTCSEEEEEEC--CSS-SCEEEEEEEGGGCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCC----cchhhh----c-ccCccCCCCCcEEEEEEe--cCC-CeEEEEEeceEEEchhhHHHHHHHHHHHHHH
Confidence 444444322 222222 2 457999556999999998 343 6899999999999999986555443 321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHH--------------HHHHHHHHHHHHHHHHHHhhcCCCCCCCccC
Q 017622 161 ADDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKT--------------FCVVSETVSDFCWSFVKSAWLQDDRTPIYSG 226 (368)
Q Consensus 161 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
......+...|... +..+..++... .+..|.... ......|....
T Consensus 146 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~l-----------~~~~~lp~~~~ 204 (422)
T 1q9j_A 146 AVTTGDPGPITPQP----------TPLSMEAVLAQRGIRKQGLSGAERFMSVMYAYEI-----------PATETPAVLAH 204 (422)
T ss_dssp HHHSSSCCCCCCCC----------CCBCHHHHHHHSSCCC-----CTTSSTTTTCC------------------------
T ss_pred hhccCCCCCCCCCC----------CCCCHHHHHHhcCCcccccchhhhhhhhhhcccC-----------CCcccCCCCCC
Confidence 00000000001000 11111110000 000110000 00000011000
Q ss_pred CCCCC-ccceEEEEEeeC---HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCCC
Q 017622 227 DDGIE-FRPVSVATTAFS---LDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRAF 297 (368)
Q Consensus 227 ~~~~~-~~~r~~~~~~~~---l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~~ 297 (368)
.+... ...+. ..++ .+.++++|+++|+|+|++++|+++.+|++| .+ .+...+...+|++.|..
T Consensus 205 ~~~~~~~~~~~---~~l~~~~~~~l~~~a~~~~~t~~~~l~aa~~~~l~r~---~~--~~~~~v~~g~~~~~R~~ 271 (422)
T 1q9j_A 205 PGLPQAVPVTR---LWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQL---RN--TPHVPIPYVYPVDLRFV 271 (422)
T ss_dssp CCSBCCCCEEE---ECCCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHH---HT--CSSCCEEEEEEEETTTT
T ss_pred CCCCCCccceE---EEeCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc---cc--CCCceEEEeeeeecccc
Confidence 11111 11122 3344 467888899999999999999999999998 11 12257999999999974
No 4
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.76 E-value=5.8e-17 Score=180.73 Aligned_cols=257 Identities=9% Similarity=0.030 Sum_probs=163.5
Q ss_pred cccCCCCcccc--cc----cCCCCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceeee-ccccc
Q 017622 7 EETEPVSPSGQ--YL----NSSALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWKR-VEVKL 79 (368)
Q Consensus 7 ~~~~pls~~~~--~~----~~~~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~~-~~~d~ 79 (368)
+..+||||.|+ |+ +..+..+++..++.++|++|.+.|++++.. .+.+||.||.++.....+.|+++- ++.++
T Consensus 10 ~d~~PLS~~Q~~lw~~~~~~~~~~~Y~~~~~~~l~g~ld~~~l~~A~~~-lv~rH~~LRt~f~~~~~~~p~Q~v~~~~~~ 88 (1304)
T 2vsq_A 10 QDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNV-IMDRYDVFRTVFIHEKVKRPVQVVLKKRQF 88 (1304)
T ss_dssp EEEEECCHHHHHHHHHHHHSTTSCTTEEEEEEEEEECCCHHHHHHHHHH-HHHHCGGGGEEEECSSCSSCEEEEESCCCC
T ss_pred CCcCCCCHHHHHHHHHHhhCCCCCceEEEEEEEEcCCcCHHHHHHHHHH-HHHhhhhceEEEEEcCCCeEEEEECCCCCC
Confidence 45899999999 32 334556899999999999999999999988 788999999999765555677763 44443
Q ss_pred CCcEEeecCCCCCCccchHHHHHHHHHHHhcCCCCCCC-CCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHh-
Q 017622 80 RNHVKVPIFPSGLSPEAYDKYFDDYISEIGMELFPQSQ-PLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSC- 157 (368)
Q Consensus 80 ~~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~~-PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l- 157 (368)
. +....+..... ...++++++++.+...+|||.++ |||++.+++. .++ ++.+++.+||+++||+|..-++..+
T Consensus 89 ~--~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~-~~~-~~~l~~~~HHii~DG~S~~~l~~el~ 163 (1304)
T 2vsq_A 89 H--IEEIDLTHLTG-SEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKK-AEE-SFEWVWSYHHIILDGWCFGIVVQDLF 163 (1304)
T ss_dssp C--EEEEECTTSCH-HHHHHHHHHHHHHHHHHCCCTTTSCSEEEEEEEE-ETT-EEEEEEEEEGGGCCHHHHHHHHHHHH
T ss_pred c--eEEEECCCCCc-hhHHHHHHHHHHHHhcCCCCCCCCCcEEEEEEEE-CCC-cEEEEEecCceeechhhHHHHHHHHH
Confidence 3 33333332210 01256788899999999999986 9999999984 233 7899999999999999985554433
Q ss_pred --hcCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHH----HHHHHHHHHHHHHHHHHHhhcC-CCCCCCccCC-CC
Q 017622 158 --LQRADDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKT----FCVVSETVSDFCWSFVKSAWLQ-DDRTPIYSGD-DG 229 (368)
Q Consensus 158 --~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 229 (368)
+........ ..+|.. + .+.++..++.+. ....|.. .+.. .....++..+ +.
T Consensus 164 ~~Y~~~~~g~~-~~l~~~------~---~y~d~~~~~~~~~~~~~~~yW~~-----------~L~~~~~~~~lp~~~~~~ 222 (1304)
T 2vsq_A 164 KVYNALREQKP-YSLPPV------K---PYKDYIKWLEKQDKQASLRYWRE-----------YLEGFEGQTTFAEQRKKQ 222 (1304)
T ss_dssp HHHHHHHTTCC-CCCCCC------C---CTHHHHHHHHTSCHHHHHHHHHH-----------HHTTCCCCCTTTTTCCCS
T ss_pred HHHHHhhcCCC-CCCCCc------c---cHHHHHHHHhcchhhHHHHHHHH-----------HhCCCCccccCCCCCCcc
Confidence 321111111 111110 0 145554432211 1122221 1111 1111222111 11
Q ss_pred CCccceEEEEEeeC---HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCCC
Q 017622 230 IEFRPVSVATTAFS---LDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRAF 297 (368)
Q Consensus 230 ~~~~~r~~~~~~~~---l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~~ 297 (368)
..+.........++ .+.++++|+++|+|+|+|++|+++..|++|.. ...+...+|++-|..
T Consensus 223 ~~~~~~~~~~~~l~~~~~~~L~~~a~~~~~T~~~vllaa~a~~L~r~tg-------~~dvv~G~pvsgR~~ 286 (1304)
T 2vsq_A 223 KDGYEPKELLFSPSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQ-------SGDLAFGTVVSGRPA 286 (1304)
T ss_dssp SCCCCEEEEEECCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-------CSEEEEEEEECCCCT
T ss_pred ccccCcceEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CCCEEEEEEeCCCCc
Confidence 11111111123344 56889999999999999999999999999952 246888899999864
No 5
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=99.74 E-value=6e-16 Score=153.68 Aligned_cols=257 Identities=10% Similarity=0.049 Sum_probs=157.7
Q ss_pred cccccCCCCcccccc----cCCCCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceeee-ccccc
Q 017622 5 EAEETEPVSPSGQYL----NSSALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWKR-VEVKL 79 (368)
Q Consensus 5 ~~~~~~pls~~~~~~----~~~~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~~-~~~d~ 79 (368)
+.++.+||||.|+|+ ......+++..++.++|++|.+.|++++.. .+.+||.||.++...+ +.++|+. +..+.
T Consensus 13 ~~~~~~pls~~Q~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~Al~~-lv~rh~~LRt~f~~~~-~~~~q~v~~~~~~ 90 (466)
T 2xhg_A 13 IIAGNVPLTPIQKWFFGKNFTNTGHWNQSSVLYRPEGFDPKVIQSVMDK-IIEHHDALRMVYQHEN-GNVVQHNRGLGGQ 90 (466)
T ss_dssp CCCEECCCCHHHHHHHHTTCTTTTCBEEEEEEEETTCCCHHHHHHHHHH-HHHHSGGGGEEEECGG-GCCEEEECCSSSC
T ss_pred ccCCCCCCCHHHHHHHhCCCCCcCcceeEEEEEcCCCCCHHHHHHHHHH-HHHhChHhheEEecCC-Cceeeeccccccc
Confidence 344689999999964 233456899999999999999999999988 7889999999997543 5666664 43445
Q ss_pred CCcEEeecCCCCCCccchHHHHHHHHHHHhcCCCCCCC-CCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHh-
Q 017622 80 RNHVKVPIFPSGLSPEAYDKYFDDYISEIGMELFPQSQ-PLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSC- 157 (368)
Q Consensus 80 ~~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~~-PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l- 157 (368)
..++...++.... +.++.++. +.+...+|||..+ |+|++.+++.- ++ .+ +++.+||+++||+|..-++..+
T Consensus 91 ~~~~~~~d~~~~~---~~~~~~~~-~~~~~~~~fdl~~~pl~r~~l~~~~-~~-~~-l~l~~HH~i~Dg~S~~~l~~el~ 163 (466)
T 2xhg_A 91 LYDFFSYNLTAQP---DVQQAIEA-ETQRLHSSMNLQEGPLVKVALFQTL-HG-DH-LFLAIHHLVVDGISWRILFEDLA 163 (466)
T ss_dssp CCEEEEEECTTCS---CHHHHHHH-HHHHHHTTCCTTTCCCEEEEEEEET-TE-EE-EEEEEEGGGCCHHHHHHHHHHHH
T ss_pred cceeEEEecCCcc---cHHHHHHH-HHHHHHhccCCCCCCeEEEEEEEcC-CC-CE-EEEEeeeeeechhhHHHHHHHHH
Confidence 5667777776543 12333444 4566789999975 99999999853 32 44 8899999999999985554433
Q ss_pred --hcCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHHH--------HHHHHHHHHHHHHHHHHhhcCCCCCCCccCC
Q 017622 158 --LQRADDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKTF--------CVVSETVSDFCWSFVKSAWLQDDRTPIYSGD 227 (368)
Q Consensus 158 --~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (368)
+........ +.+|.. . ..+.++..+..... ...|... +.. . +...++...
T Consensus 164 ~~Y~~~~~g~~-~~l~~~-----~---~~y~~~~~~~~~~~~~~~~~~~~~~W~~~-------l~~-~---~~~~lp~~~ 223 (466)
T 2xhg_A 164 TGYAQALAGQA-ISLPEK-----T---DSFQSWSQWLQEYANEADLLSEIPYWESL-------ESQ-A---KNVSLPKDY 223 (466)
T ss_dssp HHHHHHHTTCC-CCCCCC-----C---SCHHHHHHHHHHHTTSHHHHTTHHHHHHH-------HHH-C---CCCCCCCSS
T ss_pred HHHHHHHcCCC-CCCCCC-----C---CCHHHHHHHHHHHhcCccchhhhHHHHHh-------hcc-C---CcccCCccc
Confidence 221101111 111110 0 01444443332211 1222111 110 0 111222111
Q ss_pred C--CCCccceEEEEEeeCHHHHHHH---H-hhcCCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCCC
Q 017622 228 D--GIEFRPVSVATTAFSLDQIKQI---K-TKVDATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRAF 297 (368)
Q Consensus 228 ~--~~~~~~r~~~~~~~~l~~vk~i---a-~a~g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~~ 297 (368)
+ .............++-+...++ + +++|+|+|+|++|+++.+|++|... ..+...+|++-|..
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~t~~~~llaa~~~~l~~~~~~-------~dv~ig~~~~gR~~ 292 (466)
T 2xhg_A 224 EVTDCKQKSVRNMRIRLHPEETEQLLKHANQAYQTEINDLLLAALGLAFAEWSKL-------AQIVIHLEGHGRED 292 (466)
T ss_dssp CCSSCBGGGEEEEEEECCHHHHHHHHHTGGGTTTCCHHHHHHHHHHHHHHHHHCC-------SEEEEEEEECCCCS
T ss_pred cccccccccceEEEEEcCHHHHHHHHHHhHHhhCCCHHHHHHHHHHHHHHHHhCC-------CceEEEecCCCCCc
Confidence 1 1111111223456776655554 3 4579999999999999999999621 45777888888863
No 6
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=99.71 E-value=2.1e-16 Score=158.59 Aligned_cols=142 Identities=14% Similarity=0.006 Sum_probs=108.3
Q ss_pred ccccCCCCccccc--c---cCCCCCeEEEEEEEecCCCChhHHHHHHHHhhccCCcccccccccCCCCcceeeecccccC
Q 017622 6 AEETEPVSPSGQY--L---NSSALSLSVLGVLESEIPIDDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQWKRVEVKLR 80 (368)
Q Consensus 6 ~~~~~pls~~~~~--~---~~~~~~~~i~~v~~~~~~~~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W~~~~~d~~ 80 (368)
.++.+||||.|+. + ..+...+++..++.++|++|.+.|++++.. .+.+||.||.++...+ |.|+++.+.. +.
T Consensus 10 ~~~~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~g~ld~~~L~~A~~~-lv~rh~~LRt~f~~~~-~~~~~v~~~~-~~ 86 (493)
T 4hvm_A 10 RPGLRRASFLQRGAWRWLREAPPAAAFAARGLLGSGRIDDDRLAAAADE-VLDAFPLLRVNFVDDD-GLWMRTRENA-DA 86 (493)
T ss_dssp --CEEECCHHHHHHHHHHTTSCGGGGEEEEEEEEESSCCHHHHHHHHHH-HHHHCGGGGEEEEESS-SEEEEECSCC-CC
T ss_pred CCCCCCCCHHHHHHHHHHhhCCCCcceeEEEEEEeCCCCHHHHHHHHHH-HHHhchhceeEEEccC-CEEEEecCCC-CC
Confidence 3578999999993 2 233333999999999999999999999988 7889999999997643 6677334443 33
Q ss_pred CcEEeecCCCCCCccchHHHHHHHHHHHhcCCCCCCC-CCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHHh
Q 017622 81 NHVKVPIFPSGLSPEAYDKYFDDYISEIGMELFPQSQ-PLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLSC 157 (368)
Q Consensus 81 ~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld~~~-PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~l 157 (368)
+.+..+.... ..++++.+++.+...+|||..+ |+|++.+++.- ++ ++.+++.+||+++||+|..-++..+
T Consensus 87 --~~~~d~~~~~---~~~~~~~~~~~~~~~~~fdl~~~pl~r~~l~~~~-~~-~~~l~l~~HH~i~Dg~S~~~l~~~l 157 (493)
T 4hvm_A 87 --LVRSDLRGHP---DPQARCVELLRADRDRPTDPERDPLVRLHLVRLS-ET-DVVLGVVAHQMLLDARSRYMVLGAV 157 (493)
T ss_dssp --EEEEECTTSS---SHHHHHHHHHHHHHSSCCCTTTSCSEEEEEEECS-SS-EEEEEEEEETTTCCHHHHHHHHHHH
T ss_pred --ceEEECCCCC---chHHHHHHHHHHHhcCCCCCCCCCeEEEEEEEEC-CC-cEEEEEecchhhccHHHHHHHHHHH
Confidence 4445554432 1347899999999999999976 99999999852 33 6899999999999999996555544
No 7
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=98.64 E-value=1.3e-05 Score=80.74 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=41.6
Q ss_pred EeeCH---HHHHHHHhhc---CCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCC
Q 017622 240 TAFSL---DQIKQIKTKV---DATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRA 296 (368)
Q Consensus 240 ~~~~l---~~vk~ia~a~---g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~ 296 (368)
..++- +.+++.||++ |+|||.++.|+++.|+.+++...+. +.+..+.+.+|||+|+
T Consensus 282 ~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~-~~~~~~~~~~pvnlR~ 343 (519)
T 3fot_A 282 HKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDL-SDDEVFISPTSVDGRR 343 (519)
T ss_dssp EECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----C-CTTCCEEEEEEEECGG
T ss_pred EEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCccc-CCCccEEEEeeeeccc
Confidence 44554 5566668889 9999999999999999997543222 2335799999999995
No 8
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=97.10 E-value=0.026 Score=54.90 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=118.3
Q ss_pred cCCCCcccccccCCCCCeEEEEEEEecCCCC--------hhHHHHHHHHhhccCCcccccccccC-----CCCcceeee-
Q 017622 9 TEPVSPSGQYLNSSALSLSVLGVLESEIPID--------DSQCFSLLKDIFLPINPRFSSIMVVD-----ENGEKQWKR- 74 (368)
Q Consensus 9 ~~pls~~~~~~~~~~~~~~i~~v~~~~~~~~--------~~~l~~~~~~~~~~~~p~lr~~~~~~-----~~g~p~W~~- 74 (368)
..|||+.|+.+ ...++..++.|+.+.+ .+.|++++.+ .+..+|.|.=|++.. +...-.++.
T Consensus 25 ~~~LS~lD~~~----~~~~~~~~~~y~~~~~~~~~~~~~~~~Lk~sLs~-~L~~~~plAGRl~~~~~i~c~~~Gv~fv~A 99 (421)
T 2bgh_A 25 CYKISHLDQLL----LTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSK-VLTHFYPLAGRINVNSSVDCNDSGVPFVEA 99 (421)
T ss_dssp CCBCCHHHHTS----CSSEEEEEEEECCCSSCCCCHHHHHHHHHHHHHH-HTTTSGGGGSEEETTTEEECCCCCEEEEEE
T ss_pred ccCCChHHhcc----cccccceEEEEeCCCccccchhhHHHHHHHHHHH-HhhhcchhccccCCCcEEEEcCCceEEEEE
Confidence 46677777642 2467888888875421 4778888887 677788787777421 111123333
Q ss_pred -cccccCCcEEeecCCCCCCccchHHHHHHHHHHHhcC---CCCCCCCCeEEEEEecCCCCcceEEEEEeeccccCccch
Q 017622 75 -VEVKLRNHVKVPIFPSGLSPEAYDKYFDDYISEIGME---LFPQSQPLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSL 150 (368)
Q Consensus 75 -~~~d~~~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~---pld~~~PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~ 150 (368)
.+.+++++... . +. ...++.++-..... ....+.|+-.+.+-.- ..| +++|-+.+||+++||.|.
T Consensus 100 ~~d~~l~~~~~~--~--p~-----~~~~~~l~p~~~~~~~~~~~~~~pll~vQvt~f-~cg-G~~lg~~~~H~v~Dg~~~ 168 (421)
T 2bgh_A 100 RVQAQLSQAIQN--V--VE-----LEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFF-ECG-GTAIGVNLSHKIADVLSL 168 (421)
T ss_dssp EESSCHHHHHSC--C--SS-----GGGGGGGSSSCSSSSSSSCCCTTCSEEEEEEEC-TTS-CEEEEEEEETTTCCHHHH
T ss_pred EEcCCHHHHhcc--C--CC-----hHHHHhcCCCCCCccccccccCCceEEEEEEEE-cCC-CEEEEEEeeEEechHHHH
Confidence 23333322110 0 11 11222222111000 0022468877776553 333 699999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccCCCCC
Q 017622 151 MGALLSCLQRADDPSVPLTFPSVNRFPSNKKDGNNSNIFSNMYKTFCVVSETVSDFCWSFVKSAWLQDDRTPIYSGDDGI 230 (368)
Q Consensus 151 ~~ll~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (368)
..++......... .... . . | . ..+ + .. +... ..+.+.+ +..
T Consensus 169 ~~fl~~wa~~~rg-~~~~-~---~--P-~-----~dr----~-~~--------------l~p~--~~~~~~~-----~~~ 209 (421)
T 2bgh_A 169 ATFLNAWTATCRG-ETEI-V---L--P-N-----FDL----A-AR--------------HFPP--VDNTPSP-----ELV 209 (421)
T ss_dssp HHHHHHHHHHHTT-CSCC-C---C--C-B-----CSH----H-HH--------------HSCC--CTTCCCC-----CCC
T ss_pred HHHHHHHHHHhcC-CCCC-C---C--C-c-----ccc----c-cc--------------cCCC--cccCCCC-----ccC
Confidence 7777643221111 1000 0 0 1 0 000 0 00 0000 0011101 000
Q ss_pred CccceEEEEEeeCHHHHHHHHhhc-------CCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCC
Q 017622 231 EFRPVSVATTAFSLDQIKQIKTKV-------DATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRA 296 (368)
Q Consensus 231 ~~~~r~~~~~~~~l~~vk~ia~a~-------g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~ 296 (368)
...........++-+.|++++++. .+|-+|++.|.+=-++-+-..... . .++..+..++||.|.
T Consensus 210 ~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~-~-~~~~~~l~~~vd~R~ 280 (421)
T 2bgh_A 210 PDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKY-G-AKNKFVVVQAVNLRS 280 (421)
T ss_dssp CCSSEEEEEEEECHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHS-C-CCSCEEEEEEEESGG
T ss_pred CccceEEEEEEECHHHHHHHHHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccC-C-CCCceEEEEEecCcc
Confidence 011223345668888888887763 379999999977665555432211 1 236789999999997
No 9
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=96.75 E-value=0.087 Score=51.48 Aligned_cols=129 Identities=15% Similarity=0.027 Sum_probs=73.3
Q ss_pred cCCCCcccccccCCCCCeEEEEEEEecCCC-----ChhHHHHHHHHhhccCCcccccccccCCCCccee---------ee
Q 017622 9 TEPVSPSGQYLNSSALSLSVLGVLESEIPI-----DDSQCFSLLKDIFLPINPRFSSIMVVDENGEKQW---------KR 74 (368)
Q Consensus 9 ~~pls~~~~~~~~~~~~~~i~~v~~~~~~~-----~~~~l~~~~~~~~~~~~p~lr~~~~~~~~g~p~W---------~~ 74 (368)
..+||+.|+.+ ...++..++.|+.+. ..+.|++.+.+ .+..++.|.=|++....|++.. +.
T Consensus 26 ~~~LS~lD~~~----~~~~~~~~~~y~~~~~~~~~~~~~Lk~sLs~-~L~~f~plAGRl~~~~~g~~~i~c~~~Gv~fv~ 100 (439)
T 4g22_A 26 NLWNSNVDLVV----PNFHTPSVYFYRPTGSSNFFDAKVLKDALSR-ALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVE 100 (439)
T ss_dssp EECCCHHHHSC----CTTCCCEEEEECCCSCTTTTCHHHHHHHHHH-HTTTTGGGGCEEEECTTSCEEEECCCCCEEEEE
T ss_pred eecCChhHhCc----cccceeeEEEEcCCCCccccHHHHHHHHHHH-HHhhccccceeeeeCCCCCEEEEECCCCCEEEE
Confidence 45677776652 234566777776431 24789999988 6767777877776433344332 21
Q ss_pred --cccccCCcEEeecCCCCCCccchHHHHHHHHHHHhcCCCC---CCCCCeEEEEEecCCCCcceEEEEEeeccccCccc
Q 017622 75 --VEVKLRNHVKVPIFPSGLSPEAYDKYFDDYISEIGMELFP---QSQPLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFS 149 (368)
Q Consensus 75 --~~~d~~~Hv~~~~l~~~~~~~~~~~~l~~~v~~~~~~pld---~~~PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s 149 (368)
.+.+++++- ... +. ..+++++- ..+.+ .+.|+-.+.+-.- ..| +++|-+.+||+++||.|
T Consensus 101 A~~d~~l~~l~---~~~-p~------~~~~~l~p---~~~~~~~~~~~pll~vQvT~f-~cG-G~~lg~~~~H~v~Dg~~ 165 (439)
T 4g22_A 101 AESDGVVDDFG---DFA-PT------LELRRLIP---AVDYSQGISSYALLVLQVTYF-KCG-GVSLGVGMRHHAADGFS 165 (439)
T ss_dssp EEESSCGGGGT---TCC-CC------GGGGGGSC---CCCTTSCTTSSCSEEEEEEEC-TTS-CEEEEEEECTTTCCHHH
T ss_pred EEcCCcHHHhc---CCC-CC------HHHHhcCC---CCCcccccccCceeEEEEEEe-cCC-CEEEEEEeeeccCcHHH
Confidence 122222221 011 11 12222221 11111 1358887776653 434 69999999999999999
Q ss_pred hHHHHHHh
Q 017622 150 LMGALLSC 157 (368)
Q Consensus 150 ~~~ll~~l 157 (368)
...++...
T Consensus 166 ~~~Fl~~w 173 (439)
T 4g22_A 166 GLHFINSW 173 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 97766643
No 10
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=95.69 E-value=0.65 Score=45.30 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=37.6
Q ss_pred EeeCHHHHHHHHhh--------cCCcHHHHHHHHHHHHHHHHHHHhhcC-CCCceeEEEEEeecCC
Q 017622 240 TAFSLDQIKQIKTK--------VDATVNDVIAGIIFLGTRLYMQEMRQG-SGEANSTTLVLLNTRA 296 (368)
Q Consensus 240 ~~~~l~~vk~ia~a--------~g~TvNDV~LA~~agALr~yl~~~g~~-~~~~~l~a~vPvslR~ 296 (368)
..++-+.|++++++ ..+|-+|++.|.+=-++-+-....... ..++..+..++||.|.
T Consensus 243 f~f~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~ 308 (453)
T 2xr7_A 243 FIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRA 308 (453)
T ss_dssp EEECHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTS
T ss_pred EEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccc
Confidence 44666666666654 238999999998766665543221111 2336899999999996
No 11
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=93.35 E-value=0.9 Score=44.17 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=40.3
Q ss_pred EEEEeeCHHHHHHHHhhc---------CCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCC
Q 017622 237 VATTAFSLDQIKQIKTKV---------DATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRA 296 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a~---------g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~ 296 (368)
.....++-+.|++++++. .+|-+|++.|.+--++-+-. .+....++..+..++||.|.
T Consensus 231 ~~~f~f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar--~~~~~~~~~~~l~~~vd~R~ 297 (451)
T 2rkv_A 231 WAFFTFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVR--LERIDGSAPTEFCRAVDARP 297 (451)
T ss_dssp EEEEEECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHH--TTTSCTTSEEEEEEEEECHH
T ss_pred EEEEEECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHH--hccCCCCCceEEEEEecccc
Confidence 345668888888887652 27999999998766555432 12223347899999999995
No 12
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=89.34 E-value=0.49 Score=46.20 Aligned_cols=52 Identities=19% Similarity=0.097 Sum_probs=37.9
Q ss_pred EEEeeCHHHHHHHHhhc--------CCcHHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEeecCC
Q 017622 238 ATTAFSLDQIKQIKTKV--------DATVNDVIAGIIFLGTRLYMQEMRQGSGEANSTTLVLLNTRA 296 (368)
Q Consensus 238 ~~~~~~l~~vk~ia~a~--------g~TvNDV~LA~~agALr~yl~~~g~~~~~~~l~a~vPvslR~ 296 (368)
....++-+.|++++++. .+|-+|++.|.+=-++-+-. ++ +..+..++||.|.
T Consensus 247 ~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar------~~-~~~~l~~~vd~R~ 306 (454)
T 2e1v_A 247 ATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR------ND-KLQLFGFPIDRRA 306 (454)
T ss_dssp EEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH------CC-SEEEEEEEEECGG
T ss_pred EEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc------CC-CceEEEEEecchh
Confidence 34557777777776642 37999999998866655432 33 6899999999996
No 13
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=58.09 E-value=15 Score=24.35 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=23.0
Q ss_pred EeeCH---HHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 017622 240 TAFSL---DQIKQIKTKVDATVNDVIAGIIFLGTR 271 (368)
Q Consensus 240 ~~~~l---~~vk~ia~a~g~TvNDV~LA~~agALr 271 (368)
..+|- +.++..|+..|-|+|..+..++..+++
T Consensus 12 lRlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~ 46 (53)
T 1baz_A 12 LRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFK 46 (53)
T ss_dssp EECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34554 456666777899999999987765544
No 14
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=54.33 E-value=17 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 017622 244 LDQIKQIKTKVDATVNDVIAGIIFLGTR 271 (368)
Q Consensus 244 l~~vk~ia~a~g~TvNDV~LA~~agALr 271 (368)
-+.++..|+..|.|+|..+..++..+|.
T Consensus 31 ~~~L~~~A~~~grSlNaeIv~~Le~sl~ 58 (69)
T 3qoq_A 31 REQIAEVARSHHRSMNSEIIARLEQSLL 58 (69)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567778888999999999998766655
No 15
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=51.03 E-value=13 Score=32.50 Aligned_cols=38 Identities=5% Similarity=-0.122 Sum_probs=34.7
Q ss_pred EEEEeeCHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 017622 237 VATTAFSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYM 274 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a~g~TvNDV~LA~~agALr~yl 274 (368)
..+..+++..+.+.+++.+.|+|+.++=|++.||+++-
T Consensus 31 ~~~~evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~P 68 (217)
T 2i9d_A 31 SITSEVECGGARQRAKAAGQSFFLHYLYAVLRAANEIP 68 (217)
T ss_dssp EEEEEEECHHHHHHHHHTTCCHHHHHHHHHHHHHHHSG
T ss_pred EEEEEEEhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCH
Confidence 34789999999999999999999999999999999874
No 16
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=50.65 E-value=22 Score=24.66 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Q 017622 245 DQIKQIKTKVDATVNDVIAGIIFLGTRLY 273 (368)
Q Consensus 245 ~~vk~ia~a~g~TvNDV~LA~~agALr~y 273 (368)
..++..|++.|.|+|.-+..++..++...
T Consensus 20 ~~l~~~A~~~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 20 DLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 46777788899999999999888776543
No 17
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=47.60 E-value=32 Score=22.13 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=26.5
Q ss_pred eCHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhc
Q 017622 242 FSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMRQ 279 (368)
Q Consensus 242 ~~l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g~ 279 (368)
--.++++++|+..|.|-|.++ -.|++.|+.....
T Consensus 13 ~l~~~l~~lA~~~~rs~s~li----r~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 13 ATRERIKSAATRIDRTPHWLI----KQAIFSYLEQLEN 46 (52)
T ss_dssp HHHHHHHHHHHHTTCCHHHHH----HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHh
Confidence 336778888999999999985 4577899876543
No 18
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=46.14 E-value=11 Score=32.84 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=34.5
Q ss_pred EEEEeeCHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 017622 237 VATTAFSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYM 274 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a~g~TvNDV~LA~~agALr~yl 274 (368)
..+.++++..+.+.+++.+.|+|+.++=|++.||+++-
T Consensus 34 t~~~evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~P 71 (219)
T 1q23_A 34 NQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHP 71 (219)
T ss_dssp EEEEEEECHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred EEEEEEEhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCh
Confidence 34789999999999999999999999999999999873
No 19
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=43.85 E-value=12 Score=32.47 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=34.4
Q ss_pred EEEEeeCHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q 017622 237 VATTAFSLDQIKQIKTKVDATVNDVIAGIIFLGTRLYM 274 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a~g~TvNDV~LA~~agALr~yl 274 (368)
..+.++++..+.+.++..+.|+|+.++=|++.||+++-
T Consensus 29 ~~~~evDvt~l~~~rk~~~ls~~~~~ikAv~~Al~~~P 66 (213)
T 3cla_A 29 SLTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFD 66 (213)
T ss_dssp EEEEEEECHHHHHHHHTSSCCHHHHHHHHHHHHHTTCG
T ss_pred EEEEEEEHHHHHHHHHHhCCCHHHHHHHHHHHHHhhCH
Confidence 34689999999999999999999999999999999873
No 20
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=40.38 E-value=34 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=24.4
Q ss_pred EeeCH---HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Q 017622 240 TAFSL---DQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 240 ~~~~l---~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~ 277 (368)
..+|- .++|..|...|.|++||+--+ ++.||.++
T Consensus 39 i~i~~~lh~rlK~~Aa~~g~Smsdvvrel----i~~~L~~~ 75 (76)
T 1p94_A 39 VNFDEEKHTRFKAACARKGTSITDVVNQL----VDNWLKEN 75 (76)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHH----HHHHHHHC
T ss_pred EEcCHHHHHHHHHHHHHcCCCHHHHHHHH----HHHHHHhc
Confidence 44444 467777778899999998765 46777654
No 21
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=39.58 E-value=19 Score=26.09 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHHHhhcCCcHHHHHHHHH
Q 017622 245 DQIKQIKTKVDATVNDVIAGII 266 (368)
Q Consensus 245 ~~vk~ia~a~g~TvNDV~LA~~ 266 (368)
.++|++|+.-|.|||+++.-.+
T Consensus 14 ~rLKalAa~qG~SInqli~E~l 35 (83)
T 2an7_A 14 QSLKALAALQGKTIKQYALERL 35 (83)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHcCCcHHHHHHHHc
Confidence 4689999999999999988753
No 22
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=36.05 E-value=51 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=25.0
Q ss_pred CHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Q 017622 243 SLDQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 243 ~l~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~ 277 (368)
-.++++++|++.|.|-+.++ -.|++.|+...
T Consensus 14 l~~rL~~lA~~~~rs~s~li----reAi~~yl~~~ 44 (58)
T 2ay0_A 14 TRERIKSAATRIDRTPHWLI----KQAIFSYLEQL 44 (58)
T ss_dssp HHHHHHHHHHHTTCCHHHHH----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCcCHHHHH----HHHHHHHHHHH
Confidence 35678888999999999985 56888998764
No 23
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=34.59 E-value=48 Score=23.81 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 017622 245 DQIKQIKTKVDATVNDVIAGIIFLGTR 271 (368)
Q Consensus 245 ~~vk~ia~a~g~TvNDV~LA~~agALr 271 (368)
..+|.-|.++|-|+|+.+..++..++.
T Consensus 14 ~~Lk~rAa~~GrSle~e~r~iL~~a~~ 40 (77)
T 2bsq_E 14 NAIKFRARAAGRSTEAEIRLILDNIAK 40 (77)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 467777888999999999999988875
No 24
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=33.73 E-value=62 Score=20.69 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.5
Q ss_pred EeeCH---HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 017622 240 TAFSL---DQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEMR 278 (368)
Q Consensus 240 ~~~~l---~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g 278 (368)
..+|- ..++.+|+..|.|.++++-- ||..|+.+++
T Consensus 14 vrl~~el~~~l~~~a~~~g~s~s~~ir~----ai~~~l~~~~ 51 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNLTLSDVCRL----AIKEYLDNHD 51 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTCCHHHHHHH----HHHHHHHHHC
T ss_pred EEcCHHHHHHHHHHHHHhCCCHHHHHHH----HHHHHHHHhH
Confidence 45554 45666677789999997755 6677876654
No 25
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=32.85 E-value=36 Score=24.72 Aligned_cols=37 Identities=5% Similarity=0.165 Sum_probs=32.7
Q ss_pred eeCHHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHh
Q 017622 241 AFSLDQIKQIKTKVDAT-VNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 241 ~~~l~~vk~ia~a~g~T-vNDV~LA~~agALr~yl~~~ 277 (368)
.+|.+.|++|++..|++ |++-+.-.+...+..|+...
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I 47 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENV 47 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHH
Confidence 38899999999999986 99999999999999998764
No 26
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=32.37 E-value=48 Score=28.80 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=32.7
Q ss_pred EEEEeeCHHHHHHHHhh-----cCCcHHHHHHHHHHHHHHHHHH
Q 017622 237 VATTAFSLDQIKQIKTK-----VDATVNDVIAGIIFLGTRLYMQ 275 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a-----~g~TvNDV~LA~~agALr~yl~ 275 (368)
..+..+++..+.+.+++ .+.|+|+.++-+++.||+++-.
T Consensus 33 ~~~~evDvt~l~~~r~~~k~~g~kls~~~~~ikA~~~Al~~~P~ 76 (224)
T 3rqc_A 33 TVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVPSILKQYPY 76 (224)
T ss_dssp EEEECCBTHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHSGG
T ss_pred EEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHH
Confidence 34688999999888666 4679999999999999999843
No 27
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=30.67 E-value=73 Score=22.38 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=32.7
Q ss_pred EeeCHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHh
Q 017622 240 TAFSLDQIKQIKTKVDA-TVNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 240 ~~~~l~~vk~ia~a~g~-TvNDV~LA~~agALr~yl~~~ 277 (368)
..+|.+.|+.|++..|. .++|=+...++.-+-.++.+-
T Consensus 5 s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI 43 (70)
T 1taf_B 5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRI 43 (70)
T ss_dssp CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999997 899999999998887776553
No 28
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=28.48 E-value=46 Score=25.23 Aligned_cols=38 Identities=5% Similarity=0.181 Sum_probs=33.3
Q ss_pred EeeCHHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHh
Q 017622 240 TAFSLDQIKQIKTKVDAT-VNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 240 ~~~~l~~vk~ia~a~g~T-vNDV~LA~~agALr~yl~~~ 277 (368)
..+|.+.|++|++..|++ |++-+.-.+...+..|+...
T Consensus 27 ~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I 65 (102)
T 1id3_B 27 QGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESV 65 (102)
T ss_dssp GGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHH
Confidence 348999999999999986 99999999999999998764
No 29
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=27.57 E-value=66 Score=25.19 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=23.7
Q ss_pred EeeCHH---HHHHHHhhcCCcHHHHHHHHHHHHHH
Q 017622 240 TAFSLD---QIKQIKTKVDATVNDVIAGIIFLGTR 271 (368)
Q Consensus 240 ~~~~l~---~vk~ia~a~g~TvNDV~LA~~agALr 271 (368)
..+|-+ .++.+|++.|.|+|.-+..++..+|.
T Consensus 23 LRLP~eLh~~La~~Ak~eGrSLN~eIv~~Le~sl~ 57 (120)
T 1u9p_A 23 LRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFK 57 (120)
T ss_dssp EECCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 556654 56666777899999999998876544
No 30
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=26.55 E-value=1.1e+02 Score=22.42 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=26.0
Q ss_pred HHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHh
Q 017622 245 DQIKQIKTKVD-ATVNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 245 ~~vk~ia~a~g-~TvNDV~LA~~agALr~yl~~~ 277 (368)
+-|++.|...| .|+||.++.+...+-.+-+.++
T Consensus 18 ~lI~~AA~~~G~~s~s~Fv~~aa~~~A~~vi~~~ 51 (90)
T 1y9b_A 18 DLLAKAAALAGMSSINSFVLNAAIEKAKQVIERE 51 (90)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44556666679 6999999999988888877665
No 31
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=25.27 E-value=1.1e+02 Score=20.40 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHh
Q 017622 245 DQIKQIKTKVDATVNDVIAGIIFLGTRLYMQEM 277 (368)
Q Consensus 245 ~~vk~ia~a~g~TvNDV~LA~~agALr~yl~~~ 277 (368)
.+++..|...|-|+|+++-- ||..|+..+
T Consensus 26 ~rlk~~Aa~~g~Sln~~i~e----AL~~yl~~~ 54 (56)
T 2kel_A 26 TRLKVYCAKNNLQLTQAIEE----AIKEYLQKR 54 (56)
T ss_dssp HHHHHHHHHSCCCHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH----HHHHHHHHh
Confidence 45666677789999998765 556777554
No 32
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=24.46 E-value=2.8e+02 Score=26.25 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=27.7
Q ss_pred CCeEEEEEecCCCCcceEEEEEeeccccCccchHHHHHH
Q 017622 118 PLWEVHIIKYPTSHAAGFLIFKLHHSLGDGFSLMGALLS 156 (368)
Q Consensus 118 PlW~~~li~~~~~~~~~~l~~k~HHal~DG~s~~~ll~~ 156 (368)
|+-.+.+-.- ..| +++|-+.+||+++||.|...++..
T Consensus 148 pll~vQvT~f-~cg-G~~lg~~~~H~v~Dg~~~~~Fl~a 184 (454)
T 2e1v_A 148 PLFSVQVTLF-PNQ-GIAIGITNHHCLGDASTRFCFLKA 184 (454)
T ss_dssp ECEEEEEEEE-TTT-EEEEEEEECGGGCCHHHHHHHHHH
T ss_pred ceEEEEEEEe-cCC-cEEEEEEeeeeecchhHHHHHHHH
Confidence 6665555442 333 699999999999999999776664
No 33
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=23.59 E-value=50 Score=23.00 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=19.6
Q ss_pred eeCHHHHHHHHhhcCCcHHHHH
Q 017622 241 AFSLDQIKQIKTKVDATVNDVI 262 (368)
Q Consensus 241 ~~~l~~vk~ia~a~g~TvNDV~ 262 (368)
..+++.+.+|++.+|+++++++
T Consensus 50 ~p~~~~l~~ia~~l~v~~~~l~ 71 (78)
T 3qq6_A 50 NPSIQFLEKVSAVLDVSVHTLL 71 (78)
T ss_dssp CCBHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 3678999999999999999876
No 34
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=23.28 E-value=55 Score=28.68 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=36.1
Q ss_pred EEeeCHHHHHHHHhh--------cCCcHHHHHHHHHHHHHHHHHHHh-----hcCCCCceeEEEEEeec
Q 017622 239 TTAFSLDQIKQIKTK--------VDATVNDVIAGIIFLGTRLYMQEM-----RQGSGEANSTTLVLLNT 294 (368)
Q Consensus 239 ~~~~~l~~vk~ia~a--------~g~TvNDV~LA~~agALr~yl~~~-----g~~~~~~~l~a~vPvsl 294 (368)
+..+++..+.+.+++ .+.|+|+.++-+++.||++|-.-. ++......+...+.|+.
T Consensus 41 ~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igvAV~~ 109 (239)
T 3b8k_A 41 SIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVST 109 (239)
T ss_dssp EEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTSCCCSSSCSCCCCEEECEEC
T ss_pred EEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEeCceeEEEEEEc
Confidence 466777776665433 589999999999999999873211 12212234556666654
No 35
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=22.73 E-value=70 Score=28.32 Aligned_cols=39 Identities=5% Similarity=0.122 Sum_probs=31.6
Q ss_pred EEEEeeCHHHHHHHHhh-----cCCcHHHHHHHHHHHHHHHHHH
Q 017622 237 VATTAFSLDQIKQIKTK-----VDATVNDVIAGIIFLGTRLYMQ 275 (368)
Q Consensus 237 ~~~~~~~l~~vk~ia~a-----~g~TvNDV~LA~~agALr~yl~ 275 (368)
..+..++++.+.+.+++ .+.|+|++++-+++.||++|-.
T Consensus 41 ~~~~evDvt~l~~~r~~~k~~~~kls~~~~iikAva~AL~~~P~ 84 (250)
T 3l60_A 41 KASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVI 84 (250)
T ss_dssp EEEEEEECHHHHHHHHHHTTTCTTCCHHHHHHHHHHHHHHHCGG
T ss_pred EEEEEEEHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhCHH
Confidence 34688888888887664 3579999999999999999843
No 36
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.41 E-value=26 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred eCHHHHHHHHhhcCCcHHHHH
Q 017622 242 FSLDQIKQIKTKVDATVNDVI 262 (368)
Q Consensus 242 ~~l~~vk~ia~a~g~TvNDV~ 262 (368)
++++.+.+||+++|++++|++
T Consensus 63 ~s~~~l~kIa~~L~v~~~~L~ 83 (88)
T 3t76_A 63 VSLTVLLAICEYLNCDFGDII 83 (88)
T ss_dssp CCHHHHHHHHHHHTCCGGGTC
T ss_pred cCHHHHHHHHHHHCcCHHHHh
Confidence 588999999999999999864
No 37
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=21.90 E-value=75 Score=27.72 Aligned_cols=37 Identities=5% Similarity=0.143 Sum_probs=29.2
Q ss_pred EEEeeCHHHHHHHHhh----------cCCcHHHHHHHHHHHHHHHHH
Q 017622 238 ATTAFSLDQIKQIKTK----------VDATVNDVIAGIIFLGTRLYM 274 (368)
Q Consensus 238 ~~~~~~l~~vk~ia~a----------~g~TvNDV~LA~~agALr~yl 274 (368)
.+..+++..+.+.+++ .+.|+|+.++-+++.||++|-
T Consensus 32 ~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P 78 (233)
T 1scz_A 32 TFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYP 78 (233)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCT
T ss_pred EEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCh
Confidence 4577888877665332 578999999999999999874
No 38
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=21.49 E-value=1.6e+02 Score=29.58 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=36.7
Q ss_pred heeEEEEEeCCeEEEEEeecCCC--CCHHHHHHHHHHHHHHHHhc
Q 017622 324 SLSVTIVSYMGKLRIAVVGEDGF--IDSHKLKSSIENAFEMMLNG 366 (368)
Q Consensus 324 ~L~it~~Sy~g~l~~g~~ad~~~--~d~~~l~~~~~~al~eL~~~ 366 (368)
|.+|+-.--.+.+.|+|++=... -|.++|.++|+++|.++.+.
T Consensus 562 GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~l 606 (612)
T 1xl7_A 562 GYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQL 606 (612)
T ss_dssp CEEEEEEEETTEEEEEEEEETTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEcCCeEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999985544 39999999999999999763
No 39
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=21.33 E-value=78 Score=22.52 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=20.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 017622 245 DQIKQIKTKVDATVNDVIAGIIFLGTR 271 (368)
Q Consensus 245 ~~vk~ia~a~g~TvNDV~LA~~agALr 271 (368)
..++..|+..|.|+|..+..++..++.
T Consensus 17 ~~L~~~A~~~grSlN~~I~~~L~~al~ 43 (76)
T 1mnt_A 17 EKLKFRAEANGRSMNSELLQIVQDALS 43 (76)
T ss_dssp HHHHHTHHHHTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 345556777899999999988766553
No 40
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=21.26 E-value=1.5e+02 Score=30.10 Aligned_cols=43 Identities=5% Similarity=-0.012 Sum_probs=37.1
Q ss_pred heeEEEEEeCCeEEEEEeecCCCC--CHHHHHHHHHHHHHHHHhc
Q 017622 324 SLSVTIVSYMGKLRIAVVGEDGFI--DSHKLKSSIENAFEMMLNG 366 (368)
Q Consensus 324 ~L~it~~Sy~g~l~~g~~ad~~~~--d~~~l~~~~~~al~eL~~~ 366 (368)
|.+|+-.--.+.+.|+|++=...+ |.++|+++|+++|.+|.+.
T Consensus 568 GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~l 612 (639)
T 1t1u_A 568 GYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDL 612 (639)
T ss_dssp CEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCeEEEEEEeCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999865553 9999999999999999763
No 41
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=20.82 E-value=1.5e+02 Score=29.82 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=36.6
Q ss_pred heeEEEEEeCCeEEEEEeecCCCC--CHHHHHHHHHHHHHHHHh
Q 017622 324 SLSVTIVSYMGKLRIAVVGEDGFI--DSHKLKSSIENAFEMMLN 365 (368)
Q Consensus 324 ~L~it~~Sy~g~l~~g~~ad~~~~--d~~~l~~~~~~al~eL~~ 365 (368)
|.+|+-.--.+.+.|+|++=...+ |.++|.++|+++|.++.+
T Consensus 552 GyGi~Y~i~~~~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~ 595 (616)
T 1nm8_A 552 GYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRA 595 (616)
T ss_dssp CEEEEEEECSSCEEEEEEEETTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCeEEEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 888888888999999999865543 999999999999999975
No 42
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.81 E-value=66 Score=22.25 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=20.8
Q ss_pred eeCHHHHHHHHhhcCCcHHHHHHH
Q 017622 241 AFSLDQIKQIKTKVDATVNDVIAG 264 (368)
Q Consensus 241 ~~~l~~vk~ia~a~g~TvNDV~LA 264 (368)
..+++.+.+|++++|+++++++--
T Consensus 50 ~~~~~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 50 NLTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp CCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhcC
Confidence 468999999999999999998643
No 43
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.39 E-value=64 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=21.8
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhh
Q 017622 247 IKQIKTKVDATVNDVIAGIIFLGTRLYMQEMR 278 (368)
Q Consensus 247 vk~ia~a~g~TvNDV~LA~~agALr~yl~~~g 278 (368)
+++|++++|-+..||.+|+ -||.+.|
T Consensus 25 ~~el~k~t~l~d~el~lAI------GWLaREd 50 (82)
T 2l02_A 25 IPELARKVNLSVESTALAV------GWLAREN 50 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHH------HHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHH------HHHhccC
Confidence 6789999999999999986 6887655
No 44
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=20.20 E-value=84 Score=27.99 Aligned_cols=37 Identities=8% Similarity=0.151 Sum_probs=29.6
Q ss_pred EEEeeCHHHHHHHHhh---------cCCcHHHHHHHHHHHHHHHHH
Q 017622 238 ATTAFSLDQIKQIKTK---------VDATVNDVIAGIIFLGTRLYM 274 (368)
Q Consensus 238 ~~~~~~l~~vk~ia~a---------~g~TvNDV~LA~~agALr~yl 274 (368)
.+..+++..+.+.+++ .+.|+|+.++-+++.||++|-
T Consensus 58 ~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P 103 (262)
T 2ii3_A 58 YCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFP 103 (262)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCG
T ss_pred EEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhCh
Confidence 3677888887665333 479999999999999999874
No 45
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=20.12 E-value=47 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEEeeccccCccchHHHHHHh
Q 017622 135 FLIFKLHHSLGDGFSLMGALLSC 157 (368)
Q Consensus 135 ~l~~k~HHal~DG~s~~~ll~~l 157 (368)
-+-+.+||.++||.-+.+++..+
T Consensus 182 ~lsls~DHRvvDG~~aa~Fl~~l 204 (213)
T 3cla_A 182 PLSVQVHHAVCDGFHVARFINRL 204 (213)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHH
T ss_pred EEEEEEcccccChHHHHHHHHHH
Confidence 67889999999999998776643
Done!