BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017623
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
            SV=1
          Length = 1860

 Score = 35.4 bits (80), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 128  QYHLMKYPVPQKVPLAPMQNGIHPMPVNNLPMGYPVLQQPPIPAAGQPHLESMSSGISSC 187
            QY L + P+  + P+ P  +   P   +  PMG   LQ P +     P    MS  +   
Sbjct: 1352 QYGLSRPPLRMQTPMHPQASSFPPSFYSGPPMGPRGLQSPVLEGGEDPMGAGMSEDLKG- 1410

Query: 188  HVVNGVPAPGNFHPMRMNSGNDMVMDT 214
             VV G+PA  +  P+R+NS  +  +D+
Sbjct: 1411 -VVRGLPAQMHQQPLRLNSFGEESLDS 1436


>sp|Q5RAX4|CDAC1_PONAB Cytidine and dCMP deaminase domain-containing protein 1 OS=Pongo
          abelii GN=CDADC1 PE=2 SV=1
          Length = 515

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 16 VSHESQSDQQNNQTTEAPLADSGSISASSNDSRKVSRQDIELVQNL 61
          V  + Q  Q+N +    PL D+  ++  S D R+V R  + +V+N+
Sbjct: 52 VEAQRQKSQKNEEGKHGPLGDNEEMTRVSTDKRQVKRTGLVVVKNM 97


>sp|Q4R683|CDAC1_MACFA Cytidine and dCMP deaminase domain-containing protein 1 OS=Macaca
          fascicularis GN=CDADC1 PE=2 SV=1
          Length = 515

 Score = 32.7 bits (73), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 16 VSHESQSDQQNNQTTEAPLADSGSISASSNDSRKVSRQDIELVQNL 61
          V  + Q  Q+N +    PL D+  ++  S D R+V R  + +V+N+
Sbjct: 52 VEAQRQKSQKNEEGKHGPLGDNEEMTRVSTDKRQVKRTGLVVVKNM 97


>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe
            (strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1
          Length = 1611

 Score = 32.0 bits (71), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 135  PVPQKVPLAPMQNGIHPMP---VNNLPMGYPVLQQPPIPA-AGQPHLESMSSGISSCHVV 190
            P P   P  P  +GI P+P   V   P+  P +  PP+PA +G P +   S       V 
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136

Query: 191  NG---VPAPG-NFHPMRMNSGNDMVMDTSAAEVAPVIP-PSSGV 229
            +G   VP P     P+   SG   V   S A  AP +P PSSG+
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVA--APPVPAPSSGI 1178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,663,426
Number of Sequences: 539616
Number of extensions: 6250859
Number of successful extensions: 15718
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 15466
Number of HSP's gapped (non-prelim): 347
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)