Query 017623
Match_columns 368
No_of_seqs 111 out of 124
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 17:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017623.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017623hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q0ta1 a.152.1.1 (A:1-257) Hy 69.0 5 0.00036 34.7 6.9 74 57-133 78-192 (257)
2 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 68.7 4.8 0.00035 29.4 5.7 47 46-94 20-68 (80)
3 d2di0a1 a.5.2.4 (A:8-70) Activ 61.7 4.6 0.00034 29.3 4.3 37 53-90 8-53 (63)
4 d1exea_ a.55.1.1 (A:) Transcri 56.2 3.7 0.00027 30.9 3.1 30 70-99 1-30 (99)
5 d1b8za_ a.55.1.1 (A:) HU prote 55.0 4.3 0.00031 29.9 3.2 27 70-96 1-27 (90)
6 d1r8da_ a.6.1.3 (A:) Multidrug 54.8 35 0.0026 24.9 8.9 36 44-80 35-70 (109)
7 d2es9a1 a.247.1.1 (A:11-107) H 54.7 4.2 0.0003 31.5 3.1 35 74-108 45-88 (97)
8 d2e9xa1 a.278.1.1 (A:1-144) DN 54.4 7.7 0.00056 31.4 5.0 54 55-110 62-119 (144)
9 d1mula_ a.55.1.1 (A:) HU prote 54.0 5.5 0.0004 29.4 3.7 23 70-92 1-23 (90)
10 d1huua_ a.55.1.1 (A:) HU prote 45.7 7.9 0.00058 28.4 3.4 24 70-93 1-24 (90)
11 d1v63a_ a.21.1.1 (A:) Nucleola 39.9 36 0.0026 24.5 6.4 53 48-101 11-63 (101)
12 d2nxoa1 c.94.1.1 (A:5-281) Hyp 39.5 24 0.0018 28.8 5.9 37 61-97 204-241 (277)
13 d1owfa_ a.55.1.1 (A:) Integrat 39.4 11 0.00081 27.8 3.4 27 70-96 2-28 (96)
14 d2o97b1 a.55.1.1 (B:1-90) HU p 39.2 11 0.00078 27.6 3.2 23 70-92 1-23 (90)
15 d1p71a_ a.55.1.1 (A:) HU prote 39.1 10 0.00075 27.9 3.1 23 70-92 1-23 (94)
16 d2q0ta1 a.152.1.1 (A:1-257) Hy 38.8 19 0.0014 30.8 5.3 55 73-134 11-65 (257)
17 d2ozbb1 a.183.1.1 (B:85-333) U 37.5 6.9 0.00051 34.5 2.2 56 42-97 87-143 (249)
18 d1xo5a_ a.39.1.5 (A:) Calcium- 37.1 42 0.0031 26.2 6.9 35 75-109 141-177 (180)
19 d1t56a2 a.121.1.1 (A:95-214) E 32.7 24 0.0018 26.9 4.5 47 53-100 4-50 (120)
20 d1ni5a1 c.26.2.5 (A:0-226) tRN 30.5 65 0.0047 25.9 7.2 40 68-108 157-210 (227)
21 d1wi3a_ a.4.1.1 (A:) DNA-bindi 28.5 47 0.0035 23.0 5.2 48 44-94 8-55 (71)
22 d1q06a_ a.6.1.3 (A:) Transcrip 28.4 1.1E+02 0.0077 22.6 9.8 36 44-80 33-68 (127)
23 d1fi6a_ a.39.1.6 (A:) Reps1 {M 26.8 23 0.0016 25.3 3.2 53 49-102 2-57 (92)
24 d3bjha_ a.39.2.1 (A:) Pheromon 26.5 30 0.0022 25.1 3.9 31 50-80 3-33 (117)
25 d1tu9a_ a.1.1.2 (A:) Hypotheti 23.3 41 0.003 25.3 4.3 39 86-125 16-54 (131)
26 d1cbga_ c.1.8.4 (A:) Plant bet 23.1 25 0.0018 32.2 3.5 39 73-112 118-167 (490)
27 d1owfb_ a.55.1.1 (B:) Integrat 22.6 30 0.0022 25.4 3.2 21 70-90 1-22 (94)
28 d2p6va1 a.277.1.1 (A:582-678) 22.3 70 0.0051 24.6 5.4 41 48-88 28-68 (97)
29 d1ecma_ a.130.1.1 (A:) Chorism 21.5 50 0.0036 23.5 4.2 52 52-103 7-61 (91)
30 d1c07a_ a.39.1.6 (A:) Eps15 {H 21.4 34 0.0025 24.5 3.2 58 50-108 4-70 (95)
31 d1iq3a_ a.39.1.6 (A:) Pob1 {Hu 21.4 37 0.0027 25.2 3.5 61 47-108 13-82 (110)
32 d1ug6a_ c.1.8.4 (A:) Beta-gluc 20.3 34 0.0025 30.5 3.7 39 73-112 97-145 (426)
No 1
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=69.02 E-value=5 Score=34.66 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHH---------------------HhcCCCC--------------------cchHHHHH
Q 017623 57 LVQNLIERCLQLYMNRDEVVKTLL---------------------TRARIDP--------------------GFTTLVWQ 95 (368)
Q Consensus 57 ~VQnLIErCLqlyMsk~Evv~~L~---------------------~~a~I~P--------------------~fT~~VW~ 95 (368)
.++.-+.+||..-+|++||.+.|+ +..||.+ .+-...|+
T Consensus 78 ~~~~h~~~al~~G~t~~ei~E~l~~~~~~G~~~~~~~~~~~~ev~~e~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 157 (257)
T d2q0ta1 78 GVARHIERALSFGATREELIEVLELVSTIGIHTSNVGVPVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWE 157 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHTTSCCSCCCCCHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHcCCCCCCCCCcchhhHHHHHHHHHhccccHHHH
Confidence 366678899999999999988753 2334433 45557899
Q ss_pred HHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 017623 96 KLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYHLMK 133 (368)
Q Consensus 96 kLEeeNpeFFkaYy~Rl~LK~QI~~FN~Lle~Q~~lm~ 133 (368)
.|.+..|+||++|.. +...+-.=+.|-.+.++|+.
T Consensus 158 ~~~~~~P~~~~~~~~---~~~~~~~~~~L~~k~reLi~ 192 (257)
T d2q0ta1 158 GLLELDPDLFEAYVE---FSSVPWRTGVLSPKIKEFMY 192 (257)
T ss_dssp HHHHHCHHHHHHHHH---HHHHHHHHCCSCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH---HHHHHhccCCCCHHHHHHHH
Confidence 999999999999943 33333222335556666653
No 2
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=68.72 E-value=4.8 Score=29.44 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=36.2
Q ss_pred CCCcccHHhHHHHHHHHHHHH--HhhcCHHHHHHHHHHhcCCCCcchHHHH
Q 017623 46 DSRKVSRQDIELVQNLIERCL--QLYMNRDEVVKTLLTRARIDPGFTTLVW 94 (368)
Q Consensus 46 ~~r~vS~edI~~VQnLIErCL--qlyMsk~Evv~~L~~~a~I~P~fT~~VW 94 (368)
-+..+|.+.++..+...|+|. .-|-+.+| ++.|.+..||.+.... ||
T Consensus 20 ~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~-~~~la~~~gl~~~~i~-vW 68 (80)
T d1wh7a_ 20 FRTKFTAEQKEKMLAFAERLGWRIQKHDDVA-VEQFCAETGVRRQVLK-IW 68 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSCCCSSTTHH-HHHHHHHSCCCHHHHH-HH
T ss_pred ccccCCHHHHHHHHHHHHHhcccccCcCHHH-HHHHHHHHCCCHHHee-ee
Confidence 344699999999999999996 35666654 5569999999887654 56
No 3
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.74 E-value=4.6 Score=29.35 Aligned_cols=37 Identities=30% Similarity=0.659 Sum_probs=29.4
Q ss_pred HhHHHHHHH--------HHHHHHhh-cCHHHHHHHHHHhcCCCCcch
Q 017623 53 QDIELVQNL--------IERCLQLY-MNRDEVVKTLLTRARIDPGFT 90 (368)
Q Consensus 53 edI~~VQnL--------IErCLqly-Msk~Evv~~L~~~a~I~P~fT 90 (368)
..|..||.| |.+||..| .+.|+||.+|.+. ++.|...
T Consensus 8 s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe~-~Lpp~L~ 53 (63)
T d2di0a1 8 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS 53 (63)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence 457777775 89999888 7999999999875 4777653
No 4
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=56.22 E-value=3.7 Score=30.93 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTLVWQKLEE 99 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~kLEe 99 (368)
|||.|+|+.|+++.++...-...|++.+.+
T Consensus 1 M~K~eli~~ia~~~~ls~~~~~~~~~~~~~ 30 (99)
T d1exea_ 1 MNKTELIKAIAQDTGLTQVSVSKMLASFEK 30 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 899999999999999999998888876554
No 5
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=55.03 E-value=4.3 Score=29.86 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTLVWQK 96 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~k 96 (368)
|||.|+++.|+++.++...-...+++.
T Consensus 1 MnK~eli~~ia~~~~~s~~~~~~~~~~ 27 (90)
T d1b8za_ 1 MNKKELIDRVAKKAGAKKKDVKLILDT 27 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 999999999999998776655555443
No 6
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=54.78 E-value=35 Score=24.87 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 017623 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLL 80 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~ 80 (368)
.|.-|-.+.+++..++ .|-++-.+.|+.+||-+.|.
T Consensus 35 ~~gyR~Y~~~~~~~l~-~I~~lr~~G~sl~eI~~~l~ 70 (109)
T d1r8da_ 35 DAGYRLYSDADLERLQ-QILFFKEIGFRLDEIKEMLD 70 (109)
T ss_dssp TTCCEEBCHHHHHHHH-HHHHHHHTTCCHHHHHHHHH
T ss_pred CcccccccHHHHHHHH-HHHHHHHcCCCHHHHHHHHh
Confidence 4567899999999995 56677888999999988774
No 7
>d2es9a1 a.247.1.1 (A:11-107) Hypothetical protein YoaC {Salmonella typhimurium [TaxId: 90371]}
Probab=54.70 E-value=4.2 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCcchHHH--HHHHHH-------HcHHHHHHH
Q 017623 74 EVVKTLLTRARIDPGFTTLV--WQKLEE-------ENADFFRAY 108 (368)
Q Consensus 74 Evv~~L~~~a~I~P~fT~~V--W~kLEe-------eNpeFFkaY 108 (368)
+.|.+--.|-+-+|+||.-| |.+--+ .|||||..|
T Consensus 45 ~dv~aRg~qegWn~gFT~K~~gWA~k~~sGerivIKnPEyFstY 88 (97)
T d2es9a1 45 EVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTY 88 (97)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHH
T ss_pred HHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHH
Confidence 44455667899999999987 544322 699999999
No 8
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.37 E-value=7.7 Score=31.39 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=35.8
Q ss_pred HHHHHHHH---HHHHHhhc-CHHHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHH
Q 017623 55 IELVQNLI---ERCLQLYM-NRDEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYI 110 (368)
Q Consensus 55 I~~VQnLI---ErCLqlyM-sk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~ 110 (368)
|..-+..| .|||.-|+ .+-+.|+.|.=..| ..+...+=..|-..-.|||+.|..
T Consensus 62 ~~~~h~~~~RNKRCLLAY~~~R~~ri~~lrW~~g--~~Lp~~~~~~Ls~~E~eyf~~Ys~ 119 (144)
T d2e9xa1 62 IKFRHCSLLRNRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKR 119 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCcHHHHhhCCHHHHHHHHHHHH
Confidence 44444444 48999996 57778887753332 334455556677888999999954
No 9
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=54.05 E-value=5.5 Score=29.39 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=18.4
Q ss_pred cCHHHHHHHHHHhcCCCCcchHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTL 92 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~ 92 (368)
|||.|+|++|+++.++...-...
T Consensus 1 M~K~eli~~ia~~~~ltk~~~~~ 23 (90)
T d1mula_ 1 MNKTQLIDVIAEKAELSKTQAKA 23 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHhhCcCHHHHHH
Confidence 99999999999999876544433
No 10
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=45.70 E-value=7.9 Score=28.40 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTLV 93 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~V 93 (368)
|||.|+|+.|+++.++...-...+
T Consensus 1 MtK~dli~~ia~~~~~~~~~~~~~ 24 (90)
T d1huua_ 1 MNKTELINAVAETSGLSKKDATKA 24 (90)
T ss_dssp CCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCCHHHHHHH
Confidence 999999999999998765444433
No 11
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.85 E-value=36 Score=24.55 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=37.5
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 017623 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEEN 101 (368)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeN 101 (368)
|.++ -+|.+++..+..+-.-.++-.||++.|.+.-+--+.-....|..+-++.
T Consensus 11 rP~~-ay~~F~~e~r~~~~~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~ 63 (101)
T d1v63a_ 11 PPMN-GYQKFSQELLSNGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp CCSS-SHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 4455 7999999999887788899999999997754444444445555444433
No 12
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=39.46 E-value=24 Score=28.78 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHhcCCCCcchHHHHHHH
Q 017623 61 LIERCLQLY-MNRDEVVKTLLTRARIDPGFTTLVWQKL 97 (368)
Q Consensus 61 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~kL 97 (368)
.+++-+++. =+++|+++.+.++.+|.+.+....|+.+
T Consensus 204 a~~~a~~~~~~~p~ea~~~~a~~~~i~~~~~~~~~~~~ 241 (277)
T d2nxoa1 204 AFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTL 241 (277)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 334444433 3789999999999999999988888766
No 13
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=39.41 E-value=11 Score=27.79 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHhcCCCCcchHHHHHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTLVWQK 96 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~VW~k 96 (368)
|||.|+++.|.++.++...-...+.+.
T Consensus 2 mTK~eli~~ia~~~~lsk~~~~~~~~~ 28 (96)
T d1owfa_ 2 LTKAEMSEYLFDKLGLSKRDAKELVEL 28 (96)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999999999877665555443
No 14
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=39.25 E-value=11 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=17.3
Q ss_pred cCHHHHHHHHHHhcCCCCcchHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTL 92 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~ 92 (368)
|||.|+|+.|.++.++...-...
T Consensus 1 M~K~eLi~~ia~~~~l~~~~~~~ 23 (90)
T d2o97b1 1 MNKSQLIDKIAAGADISKAAAGR 23 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHH
T ss_pred CCHHHHHHHHHHccCCCHHHHHH
Confidence 99999999999988775544443
No 15
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=39.10 E-value=10 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHhcCCCCcchHH
Q 017623 70 MNRDEVVKTLLTRARIDPGFTTL 92 (368)
Q Consensus 70 Msk~Evv~~L~~~a~I~P~fT~~ 92 (368)
|||.|+|+.|.++.++...-...
T Consensus 1 M~K~eli~~ia~~~~ls~~~~~~ 23 (94)
T d1p71a_ 1 MNKGELVDAVAEKASVTKKQADA 23 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHhhCcCHHHHHH
Confidence 89999999999998875544433
No 16
>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006 {Burkholderia xenovorans [TaxId: 36873]}
Probab=38.75 E-value=19 Score=30.82 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017623 73 DEVVKTLLTRARIDPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLLEHQYHLMKY 134 (368)
Q Consensus 73 ~Evv~~L~~~a~I~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~Lle~Q~~lm~~ 134 (368)
+++.+.+.+..|=-+ ..|..|.+..|+||++|.. +...+.+=+.|-.++++|+..
T Consensus 11 ~~l~e~~~~~~G~~~----~~~~~l~~~dP~~~~~~~~---~~~~~~~~g~L~~k~keLi~l 65 (257)
T d2q0ta1 11 SRLRDELVRLHGKAS----PEWDSLVRLDPRFVDAYLK---FAGVPQRRNHLDDKTRAFIAL 65 (257)
T ss_dssp HHHHHHHHHHHSSCC----HHHHHHHHHCHHHHHHHHH---HHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcc----hHHHHHHHcCHHHHHHHHH---HHHHHhcCCCCCHHHHHHHHH
Confidence 445555655555322 5899999999999999943 344444445677777776543
No 17
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.47 E-value=6.9 Score=34.46 Aligned_cols=56 Identities=16% Similarity=0.353 Sum_probs=47.7
Q ss_pred ccCCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHh-cCCCCcchHHHHHHH
Q 017623 42 ASSNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTR-ARIDPGFTTLVWQKL 97 (368)
Q Consensus 42 ~~~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~-a~I~P~fT~~VW~kL 97 (368)
++...++.+|.+|+..|+++.++-+++|=.|+++..+|..+ ..|-|.+|.+|=..+
T Consensus 87 a~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~~ 143 (249)
T d2ozbb1 87 ASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGAST 143 (249)
T ss_dssp HHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCchH
Confidence 33457789999999999999999999999999999999888 668888888876433
No 18
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.14 E-value=42 Score=26.17 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCC--cchHHHHHHHHHHcHHHHHHHH
Q 017623 75 VVKTLLTRARIDP--GFTTLVWQKLEEENADFFRAYY 109 (368)
Q Consensus 75 vv~~L~~~a~I~P--~fT~~VW~kLEeeNpeFFkaYy 109 (368)
+|+.+.+++..+- .++..=|.++-+.||+|.+++.
T Consensus 141 ~v~~~~~~~D~d~dG~Is~~EF~~~~~~~P~~~~~f~ 177 (180)
T d1xo5a_ 141 LIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFK 177 (180)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHhCHHHHhhCe
Confidence 3444445544443 5788888888889999988874
No 19
>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=32.74 E-value=24 Score=26.89 Aligned_cols=47 Identities=6% Similarity=0.153 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 017623 53 QDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEE 100 (368)
Q Consensus 53 edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEee 100 (368)
+....+++.|...|+.|-.-.-++..+...+..+|.|-. +|.++.+.
T Consensus 4 d~~~~~r~~~~a~~~~~~~h~~vm~a~~q~a~~~~e~~~-~w~~~~~~ 50 (120)
T d1t56a2 4 DRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAE-LWSTFMQK 50 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH-HHHHHHHH
Confidence 346778999999999999999999999999999999987 78776543
No 20
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.51 E-value=65 Score=25.90 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=27.7
Q ss_pred hhcCHHHHHHHHHHhcCCCCc---------ch-----HHHHHHHHHHcHHHHHHH
Q 017623 68 LYMNRDEVVKTLLTRARIDPG---------FT-----TLVWQKLEEENADFFRAY 108 (368)
Q Consensus 68 lyMsk~Evv~~L~~~a~I~P~---------fT-----~~VW~kLEeeNpeFFkaY 108 (368)
++++|+||.+++ +..||... ++ ..|...||+.+|.+-+..
T Consensus 157 l~~~k~eI~~~~-~~~~l~~~~d~sn~~~~~~Rn~iR~~l~p~l~~~~p~~~~~l 210 (227)
T d1ni5a1 157 LARTRGELVQWA-RQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEAT 210 (227)
T ss_dssp GSCCHHHHHHHH-HHTTCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHH
T ss_pred hcCCHHHHHHHh-cccccccccCCCCCcchhHHHHHHHHHHHHHHHHCccHHHHH
Confidence 478999998876 46666543 22 346778999999875544
No 21
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.49 E-value=47 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCcchHHHH
Q 017623 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPGFTTLVW 94 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW 94 (368)
...++++|.+.+...+...++| ..|.+.+|..+ |.++.|+.+... -||
T Consensus 8 ~r~R~~~t~~Q~~~Le~~F~~~-~~~P~~~~~~~-La~~lgl~~~qV-~~W 55 (71)
T d1wi3a_ 8 PRSRTKISLEALGILQSFIHDV-GLYPDQEAIHT-LSAQLDLPKHTI-IKF 55 (71)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHH-HHHHSCCCHHHH-HHH
T ss_pred CCCCccCCHHHHHHHHHHHHHh-cCCCCHHHHHH-HHHHhCCCHHHH-HHH
Confidence 3455678888877644444332 34888888665 999999887543 344
No 22
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia coli [TaxId: 562]}
Probab=28.44 E-value=1.1e+02 Score=22.65 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCCCCcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 017623 44 SNDSRKVSRQDIELVQNLIERCLQLYMNRDEVVKTLL 80 (368)
Q Consensus 44 ~~~~r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~ 80 (368)
.|.-|..+.++|..++ +|-++..+-|+.+||-+.|.
T Consensus 33 ~~gyR~Y~~~~i~~l~-~I~~lr~~G~sl~eI~~~l~ 68 (127)
T d1q06a_ 33 ENGYRTYTQQHLNELT-LLRQARQVGFNLEESGELVN 68 (127)
T ss_dssp TTSCEECCHHHHHHHH-HHHHHHHTTCCHHHHHHHHH
T ss_pred CcCcccchHHHHHHHH-HHHHHHHcCCCHHHHHHHHH
Confidence 5677899999999987 47788899999999977664
No 23
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.76 E-value=23 Score=25.27 Aligned_cols=53 Identities=8% Similarity=0.174 Sum_probs=38.3
Q ss_pred cccHHhHHHHHHHHHHH---HHhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcH
Q 017623 49 KVSRQDIELVQNLIERC---LQLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENA 102 (368)
Q Consensus 49 ~vS~edI~~VQnLIErC---LqlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNp 102 (368)
++|.++++..+.+-+.| =.-+++.+|+...|. +.++....-..+|+..-..+.
T Consensus 2 ~ls~ee~~~y~~~F~~~D~d~~G~i~~~e~~~~l~-~~~l~~~~l~~i~~~~D~d~d 57 (92)
T d1fi6a_ 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFT-KSKLPILELSHIWELSDFDKD 57 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHH-HHSSCHHHHHHHHHHHCTTCS
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchhHHHHHHHHH-HccCCHHHHHHHHHHhCCCCC
Confidence 46778887766655544 233688899988775 578988888889998876654
No 24
>d3bjha_ a.39.2.1 (A:) Pheromone-binding protein asp1 {Common honeybee (Apis mellifera) [TaxId: 7460]}
Probab=26.45 E-value=30 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.8
Q ss_pred ccHHhHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 017623 50 VSRQDIELVQNLIERCLQLYMNRDEVVKTLL 80 (368)
Q Consensus 50 vS~edI~~VQnLIErCLqlyMsk~Evv~~L~ 80 (368)
|+.+-+++|+.+.++|++.+=--+|.++.+.
T Consensus 3 ~ppe~~e~~~~~~~~C~~~~gv~~e~~~~~~ 33 (117)
T d3bjha_ 3 VPPEVFDLVAEDKARCMSEHGTTQAQIDDVD 33 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhhCcCHHHHHHHH
Confidence 6788999999999999987655566666664
No 25
>d1tu9a_ a.1.1.2 (A:) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.35 E-value=41 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHH
Q 017623 86 DPGFTTLVWQKLEEENADFFRAYYIRLKLKKQILLFNHLL 125 (368)
Q Consensus 86 ~P~fT~~VW~kLEeeNpeFFkaYy~Rl~LK~QI~~FN~Ll 125 (368)
.+.|+...|++|-+.+|++ |.+..+..+++|-..+-..+
T Consensus 16 ~~~f~~~FY~~lf~~~P~~-r~lF~~~d~~~q~~~l~~~~ 54 (131)
T d1tu9a_ 16 STGFFDDFYRHFLASSPQI-RAKFATTDMTAQKHLLRAGI 54 (131)
T ss_dssp STTHHHHHHHHHHHTCHHH-HHHTTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCHHH-HHHcCCccHHHHHHHHHHHH
Confidence 4788999999999999996 77777766777776655433
No 26
>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]}
Probab=23.09 E-value=25 Score=32.17 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCCcchHH-----HHH--H----HHHHcHHHHHHHHHHH
Q 017623 73 DEVVKTLLTRARIDPGFTTL-----VWQ--K----LEEENADFFRAYYIRL 112 (368)
Q Consensus 73 ~Evv~~L~~~a~I~P~fT~~-----VW~--k----LEeeNpeFFkaYy~Rl 112 (368)
+++|+.| ..+||+|.+|.. .|= + +-+++.++|..|-.++
T Consensus 118 ~~~i~~l-~~~GIeP~vTL~HfdlP~~l~~~~Ggw~n~~~~~~F~~Ya~~v 167 (490)
T d1cbga_ 118 NNLINEV-LANGMQPYVTLFHWDVPQALEDEYRGFLGRNIVDDFRDYAELC 167 (490)
T ss_dssp HHHHHHH-HHTTCEEEEEEESSCCBHHHHHHHCGGGSTTHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCeEEEEeecCCChHHHhhcccccCCHHHHHHHHHHHHHH
Confidence 5555555 467899998763 332 3 3478888999995444
No 27
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=22.57 E-value=30 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=15.0
Q ss_pred cCHHHHHHHHHHh-cCCCCcch
Q 017623 70 MNRDEVVKTLLTR-ARIDPGFT 90 (368)
Q Consensus 70 Msk~Evv~~L~~~-a~I~P~fT 90 (368)
|+|.|+|+.|..+ .++...-.
T Consensus 1 MtK~eli~~ia~~~~~ls~~~~ 22 (94)
T d1owfb_ 1 MTKSELIERLATQQSHIPAKTV 22 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHHHH
Confidence 8999999999744 45555433
No 28
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.25 E-value=70 Score=24.55 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=36.0
Q ss_pred CcccHHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCc
Q 017623 48 RKVSRQDIELVQNLIERCLQLYMNRDEVVKTLLTRARIDPG 88 (368)
Q Consensus 48 r~vS~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I~P~ 88 (368)
.+++.|--+.|+.||..++.--++-||--..|++..|-.|-
T Consensus 28 ~~~spe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~lns~pq 68 (97)
T d2p6va1 28 GKQSTETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQ 68 (97)
T ss_dssp SSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCCC
T ss_pred CCCCchHHHHHHHHHHHHHhCCcCHHHHHHHHHHHhcCCCC
Confidence 45788888999999999999999999999999998776654
No 29
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=21.55 E-value=50 Score=23.50 Aligned_cols=52 Identities=12% Similarity=-0.032 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHHHhhcCHHHHHHHHHHhcCC---CCcchHHHHHHHHHHcHH
Q 017623 52 RQDIELVQNLIERCLQLYMNRDEVVKTLLTRARI---DPGFTTLVWQKLEEENAD 103 (368)
Q Consensus 52 ~edI~~VQnLIErCLqlyMsk~Evv~~L~~~a~I---~P~fT~~VW~kLEeeNpe 103 (368)
++.|+.+-.-|=.-|...|..-+-|-.+.++.|. +|.=-..|++++.+.+.+
T Consensus 7 R~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~~i~d~~RE~~il~~~~~~~~~ 61 (91)
T d1ecma_ 7 REKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKA 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHhhc
Confidence 3445554444444444444444444444444443 222233444444444433
No 30
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.37 E-value=34 Score=24.49 Aligned_cols=58 Identities=12% Similarity=0.251 Sum_probs=42.2
Q ss_pred ccHHhHHHHHHHHHHHHH---hhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHcH------HHHHHH
Q 017623 50 VSRQDIELVQNLIERCLQ---LYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEENA------DFFRAY 108 (368)
Q Consensus 50 vS~edI~~VQnLIErCLq---lyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeNp------eFFkaY 108 (368)
+|.++.+..+++-..|=. -|++.+|++..| .+.++....-..+|+..-..+. ||+.|.
T Consensus 4 lt~~e~~~~~~~F~~~D~d~~G~is~~e~~~~l-~~~~l~~~~l~~i~~~~D~d~dG~l~~~EF~~am 70 (95)
T d1c07a_ 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIF-LKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF 70 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHH-HTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHH-HhcCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 566777776666655522 479999999877 5688988888889998876553 676664
No 31
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.35 E-value=37 Score=25.24 Aligned_cols=61 Identities=10% Similarity=0.275 Sum_probs=47.1
Q ss_pred CCcccHHhHHHHHHHHHHHH---HhhcCHHHHHHHHHHhcCCCCcchHHHHHHHHHHc------HHHHHHH
Q 017623 47 SRKVSRQDIELVQNLIERCL---QLYMNRDEVVKTLLTRARIDPGFTTLVWQKLEEEN------ADFFRAY 108 (368)
Q Consensus 47 ~r~vS~edI~~VQnLIErCL---qlyMsk~Evv~~L~~~a~I~P~fT~~VW~kLEeeN------peFFkaY 108 (368)
.-.+|.++++..+.+-..|= .-|.+.+|+...| .+.|+....-..||+..-..+ .||+.|.
T Consensus 13 ~~~lt~ee~~~y~~lF~~~D~d~~G~Is~~e~~~~l-~~s~L~~~~L~~Iw~l~D~d~dG~l~~~EF~~am 82 (110)
T d1iq3a_ 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFF-TKSKLSIPELSYIWELSDADCDGALTLPEFCAAF 82 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHC-CSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhCCCcccchhHHHHHHHH-HhhccchHHHHHHHHHhccCCCCeECHHHHHHHH
Confidence 35899999999888888773 3468888988866 568999999999999876544 3676655
No 32
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus [TaxId: 274]}
Probab=20.35 E-value=34 Score=30.55 Aligned_cols=39 Identities=26% Similarity=0.228 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCCcchH-----HHHHH-----HHHHcHHHHHHHHHHH
Q 017623 73 DEVVKTLLTRARIDPGFTT-----LVWQK-----LEEENADFFRAYYIRL 112 (368)
Q Consensus 73 ~Evv~~L~~~a~I~P~fT~-----~VW~k-----LEeeNpeFFkaYy~Rl 112 (368)
.++|+.| ...||+|.+|. ..|-. +-+++.+.|..|-.++
T Consensus 97 ~~~i~~l-~~~GI~P~VTL~Hfd~P~~l~~~gGw~~~~~~~~F~~Ya~~v 145 (426)
T d1ug6a_ 97 DRLVDRL-LASGITPFLTLYHWDLPLALEERGGWRSRETAFAFAEYAEAV 145 (426)
T ss_dssp HHHHHHH-HHTTCEEEEEEESSCCBHHHHTTTGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCeEEEEecccccchhhhccCccCCHHHHHHHHHHHHHH
Confidence 3444444 35789998776 34522 3367788888885443
Done!