BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017624
MSKPSKAIINGLLRLHFDHLLRVNPSSKSKPSLSSAFYSHFSSRGSSNFTTSTSHIHSTK
LPSKFTSANLGLAQILSNSRKPNVKISPGFRFFSFKSEFGQKLNGNFTKKVFEKPASVVS
STFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIANTFVGISEGMAKYGF
LALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSG
GGITMKNFKPRFRSKRCFLIFPIRGSERKGLVSVEVKKKKGQHDTKLLAIDIPMKSGPDQ
RLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAERKHRE
EIKKLEKS

High Scoring Gene Products

Symbol, full name Information P value
AT3G56430 protein from Arabidopsis thaliana 1.9e-108
AT2G40800 protein from Arabidopsis thaliana 1.2e-106

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017624
        (368 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2102599 - symbol:AT3G56430 "AT3G56430" species...   998  1.9e-108  3
TAIR|locus:2064839 - symbol:AT2G40800 "AT2G40800" species...  1055  1.2e-106  1


>TAIR|locus:2102599 [details] [associations]
            symbol:AT3G56430 "AT3G56430" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005773
            "vacuole" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
            GO:GO:0005739 GO:GO:0005773 GO:GO:0009536 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL163972 EMBL:BT022014 EMBL:BT028968
            IPI:IPI00538001 PIR:T49044 RefSeq:NP_191202.1 UniGene:At.34936
            ProteinModelPortal:Q9LXZ7 PaxDb:Q9LXZ7 PRIDE:Q9LXZ7
            EnsemblPlants:AT3G56430.1 GeneID:824810 KEGG:ath:AT3G56430
            TAIR:At3g56430 eggNOG:NOG332027 HOGENOM:HOG000153166
            InParanoid:Q9LXZ7 OMA:FARYRMA PhylomeDB:Q9LXZ7
            ProtClustDB:CLSN2683641 Genevestigator:Q9LXZ7 Uniprot:Q9LXZ7
        Length = 434

 Score = 998 (356.4 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 206/319 (64%), Positives = 244/319 (76%)

Query:    63 SKFTSANLGLAQILSNSR-------------KPNVKIS--PGFRFFSFKSEFGQKLNGNF 107
             S+ TS N+GL+QIL + +             KP V ++    FR FS  S F +K++GNF
Sbjct:    91 SRPTSKNVGLSQILPSPKLVPGLQNCGVALVKPRVNMNFVSAFRLFS-SSGF-RKVDGNF 148

Query:   108 TKKVFEKPASVVSSTFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIANT 167
              +KV +KP   VSSTF+RYR A+GL +DAF+K N LL+FGAG V VC+ LWR+MFGIA+T
Sbjct:   149 ARKVVDKPIKAVSSTFARYRMALGLHVDAFWKKNNLLVFGAGAVFVCIFLWRVMFGIAST 208

Query:   168 FVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAGILEVMGAP 227
             FVG+SEGMAKYGFLALS+AIVAFAGLY+R+RFTINPDKVYR+ MRKLNT+A +LEVMGAP
Sbjct:   209 FVGLSEGMAKYGFLALSSAIVAFAGLYLRARFTINPDKVYRITMRKLNTAADVLEVMGAP 268

Query:   228 LSGTSLRAYVMSGGGITMKNFKPRFRSKRCFLIFPIRGSERKGLVSVEVKKKKGQHDTKL 287
             L+G+ LRAYVMSGGGIT K FKP  R+KRCFL+FP++GSERKGLVSVEVKKKKGQ+D KL
Sbjct:   269 LAGSDLRAYVMSGGGITFKKFKPTIRNKRCFLLFPVQGSERKGLVSVEVKKKKGQYDMKL 328

Query:   288 LAIDIPMKSGPDQRLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKXXXXXXXXXXXXXX 347
             LA+DIPM SGPDQRLFLIGDEEEY+VG GLI+ELRDPVVKAMAATK              
Sbjct:   329 LAVDIPMASGPDQRLFLIGDEEEYRVGGGLISELRDPVVKAMAATKEFDNLDRIEEEEDA 388

Query:   348 XXXXXXXXRKHREEIKKLE 366
                     RK REEI+  E
Sbjct:   389 ERELQEAERKEREEIELQE 407

 Score = 59 (25.8 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 28/99 (28%), Positives = 40/99 (40%)

Query:     1 MSKPS--KAIINGLLRLHFDHLLRVNXXXXXXXXXXXXXXXXXXXXXXXXXTTSTSHIHS 58
             M KPS  KA+ + L++LH+    RVN                             S  H+
Sbjct:     1 MVKPSDFKAV-HKLIQLHYS---RVNLFTTTGWSKLSALSSPALPSNGVSQLQPKSGFHT 56

Query:    59 TKLPSKFTSANLGLAQILSNSRKPNVKISPGFRFFSFKS 97
                 S+ TS N GL+QIL ++     ++ P   F SF S
Sbjct:    57 --FSSRPTSKNFGLSQILPSNGVS--QLQPKTSFHSFLS 91

 Score = 49 (22.3 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 10/12 (83%), Positives = 11/12 (91%)

Query:   356 RKHREEIKKLEK 367
             RK REEI+KLEK
Sbjct:   423 RKQREEIEKLEK 434


>TAIR|locus:2064839 [details] [associations]
            symbol:AT2G40800 "AT2G40800" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR
            eggNOG:NOG332027 HOGENOM:HOG000153166 ProtClustDB:CLSN2683641
            EMBL:AY065132 EMBL:AY081582 IPI:IPI00536859 PIR:A84834
            RefSeq:NP_181612.1 UniGene:At.28583 UniGene:At.67339
            ProteinModelPortal:Q9SHB0 PaxDb:Q9SHB0 PRIDE:Q9SHB0
            EnsemblPlants:AT2G40800.1 GeneID:818677 KEGG:ath:AT2G40800
            TAIR:At2g40800 InParanoid:Q9SHB0 OMA:SRFTINP PhylomeDB:Q9SHB0
            ArrayExpress:Q9SHB0 Genevestigator:Q9SHB0 Uniprot:Q9SHB0
        Length = 377

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 231/381 (60%), Positives = 266/381 (69%)

Query:     1 MSKPS--KAIINGLLRLHFDHLLRVNXXXXXXXXXXXXXXXXXXXXXXXXXTTSTSHIHS 58
             M KPS  KAI  G +RLH+    RVN                             S  HS
Sbjct:     1 MVKPSDFKAI-QGFIRLHYT---RVNPVTIGRSNPSALSSPAIPSNGVSQLQPKFS-FHS 55

Query:    59 TKLPSKFTSANLGLAQILSNSR-KP-----------NVKISPGFRFFSFKSEFGQKLNGN 106
               L SK TS N+GL QILS+ +  P           NV  +  FR  S KS   +K++G+
Sbjct:    56 --LSSKPTSKNVGLYQILSSPKLNPKLQQALGLPRVNVSFASAFRLVSTKSSGFRKVDGS 113

Query:   107 FTKKVFEKPASVVSSTFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIAN 166
             F +KV +KP   VSSTF+RYREAIGL IDAF+K N L++FGA GV VC+ LWRIMFGIA+
Sbjct:   114 FARKVVDKPVKAVSSTFARYREAIGLHIDAFWKKNSLVVFGAAGVFVCIFLWRIMFGIAS 173

Query:   167 TFVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAGILEVMGA 226
             TFVG+SEGMAKYGFLALS+AIVAF+GLY+RSRFTINPDKVYRM MRK+NT+A ILEVMGA
Sbjct:   174 TFVGLSEGMAKYGFLALSSAIVAFSGLYLRSRFTINPDKVYRMTMRKINTAAEILEVMGA 233

Query:   227 PLSGTSLRAYVMSGGGITMKNFKPRFRSKRCFLIFPIRGSERKGLVSVEVKKKKGQHDTK 286
             PLSG+ LRAYVMSGGGIT K FKP  RSKRCFL+FP++GSE+KGLVSVEVKKKKGQ+D K
Sbjct:   234 PLSGSDLRAYVMSGGGITFKKFKPTIRSKRCFLLFPVQGSEQKGLVSVEVKKKKGQYDMK 293

Query:   287 LLAIDIPMKSGPDQRLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKXXXXXXXXXXXXX 346
             LLA+DIPM SGPDQRLFLIGDEEEY++G GLI+ LRDPVVKAMAATK             
Sbjct:   294 LLAVDIPMASGPDQRLFLIGDEEEYRIGGGLISVLRDPVVKAMAATKEFDNLDRIEEEED 353

Query:   347 XXXXXXXXXRKHREEIKKLEK 367
                      RKHREEI+KLEK
Sbjct:   354 AERELQEAERKHREEIEKLEK 374


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       321   0.00085  116 3  11 22  0.49    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  184 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.49u 0.09s 25.58t   Elapsed:  00:00:01
  Total cpu time:  25.49u 0.09s 25.58t   Elapsed:  00:00:01
  Start:  Mon May 20 21:13:34 2013   End:  Mon May 20 21:13:35 2013

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