BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017624
         (368 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O55028|BCKD_MOUSE [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase,
           mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1
          Length = 412

 Score = 32.3 bits (72), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 28  KSKPSLSSAFYSHFSSRGSSNFTTSTSHIHSTKLPSKFTSANLGLAQILSNSRKPNVKIS 87
           +S  SL     S  S R  S   T T H+   +  SK  ++    + I   + KP+V+++
Sbjct: 12  RSWSSLWPLLGSSLSLRARSTSATDTHHVELARERSKTVTSFYNQSAIDVAAEKPSVRLT 71

Query: 88  PGFRFFSFKSEFGQKL 103
           P    +S +S+ G  L
Sbjct: 72  PTMMLYSGRSQDGSHL 87


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,778,585
Number of Sequences: 539616
Number of extensions: 5705982
Number of successful extensions: 24712
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 24636
Number of HSP's gapped (non-prelim): 102
length of query: 368
length of database: 191,569,459
effective HSP length: 119
effective length of query: 249
effective length of database: 127,355,155
effective search space: 31711433595
effective search space used: 31711433595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)