Query 017624
Match_columns 368
No_of_seqs 24 out of 26
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08294 TIM21: TIM21; InterP 99.2 1.1E-10 2.5E-15 101.1 8.4 97 201-306 37-143 (145)
2 PF08695 Coa1: Cytochrome oxid 99.0 2.5E-09 5.4E-14 86.7 9.8 103 187-304 8-114 (116)
3 KOG4836 Uncharacterized conser 95.8 0.013 2.8E-07 55.4 4.8 94 201-307 107-208 (215)
4 KOG1029 Endocytic adaptor prot 90.7 0.22 4.9E-06 55.0 3.6 57 308-364 319-375 (1118)
5 PF06936 Selenoprotein_S: Sele 75.0 3.7 8.1E-05 38.1 3.8 26 342-367 99-124 (190)
6 PF12757 DUF3812: Protein of u 71.7 6.8 0.00015 33.8 4.4 55 310-366 60-120 (126)
7 TIGR03166 alt_F1F0_F1_eps alte 66.5 1.6 3.5E-05 37.3 -0.4 59 306-367 54-116 (122)
8 PRK13447 F0F1 ATP synthase sub 60.5 3.9 8.6E-05 35.8 0.9 90 271-367 18-118 (136)
9 PTZ00266 NIMA-related protein 54.7 9.3 0.0002 43.3 2.7 12 153-164 229-240 (1021)
10 PF04568 IATP: Mitochondrial A 52.7 14 0.00031 31.4 2.9 38 330-367 60-97 (100)
11 KOG2002 TPR-containing nuclear 50.9 16 0.00035 41.6 3.7 40 324-363 822-865 (1018)
12 PF03851 UvdE: UV-endonuclease 50.4 23 0.00051 34.5 4.3 80 161-241 61-154 (275)
13 PF11377 DUF3180: Protein of u 48.2 75 0.0016 27.8 6.8 66 143-211 1-74 (138)
14 PF10031 DUF2273: Small integr 47.5 44 0.00096 25.3 4.5 24 135-158 1-24 (51)
15 PRK13451 atpC F0F1 ATP synthas 46.9 7.8 0.00017 32.0 0.5 53 300-356 47-99 (101)
16 PTZ00266 NIMA-related protein 45.7 17 0.00036 41.4 2.9 29 199-230 279-307 (1021)
17 COG3149 PulM Type II secretory 43.7 22 0.00049 33.4 3.0 112 129-248 19-144 (181)
18 TIGR03647 Na_symport_sm probab 43.6 69 0.0015 26.1 5.4 68 136-219 1-74 (77)
19 PF15402 Spc7_N: N-terminus of 42.5 23 0.00049 40.1 3.3 29 338-366 137-165 (927)
20 COG0397 Uncharacterized conser 41.4 34 0.00075 36.3 4.2 105 215-332 53-158 (488)
21 PF14748 P5CR_dimer: Pyrroline 40.9 7.3 0.00016 32.1 -0.5 49 197-247 32-80 (107)
22 PF13937 DUF4212: Domain of un 40.8 1.2E+02 0.0025 25.1 6.3 72 133-220 2-79 (81)
23 KOG3921 Uncharacterized conser 40.2 40 0.00087 34.4 4.3 63 150-221 163-227 (360)
24 PF09972 DUF2207: Predicted me 39.2 1.6E+02 0.0034 28.5 8.0 22 116-137 361-382 (511)
25 PF01237 Oxysterol_BP: Oxyster 39.1 3.6E+02 0.0078 26.3 10.5 102 256-364 188-322 (354)
26 TIGR00629 uvde UV damage endon 38.8 53 0.0011 32.7 4.9 83 161-243 68-165 (312)
27 PRK13444 atpC F0F1 ATP synthas 37.1 16 0.00035 31.2 0.9 80 271-359 22-107 (127)
28 KOG3054 Uncharacterized conser 36.9 1.4E+02 0.0029 30.2 7.2 26 178-203 5-30 (299)
29 PF13687 DUF4153: Domain of un 36.7 1.6E+02 0.0034 26.8 7.2 32 180-211 131-163 (217)
30 PF11859 DUF3379: Protein of u 36.6 1.5E+02 0.0032 28.8 7.3 123 180-310 81-219 (232)
31 PF10693 DUF2499: Protein of u 36.5 74 0.0016 27.0 4.7 62 123-187 24-87 (90)
32 PF14800 DUF4481: Domain of un 36.3 1.5E+02 0.0032 30.2 7.4 94 123-221 38-144 (308)
33 PRK06228 F0F1 ATP synthase sub 36.2 8.4 0.00018 33.5 -0.9 57 308-367 59-119 (131)
34 KOG3170 Conserved phosducin-li 35.9 37 0.00081 33.1 3.2 34 333-366 50-85 (240)
35 PF04632 FUSC: Fusaric acid re 33.8 2E+02 0.0043 29.4 8.1 46 112-157 24-69 (650)
36 PF11282 DUF3082: Protein of u 32.6 1.5E+02 0.0033 24.6 5.9 26 145-170 8-34 (82)
37 PF14110 DUF4282: Domain of un 32.4 61 0.0013 26.2 3.5 23 142-164 50-72 (90)
38 cd02988 Phd_like_VIAF Phosduci 32.2 29 0.00062 31.5 1.8 31 336-366 46-76 (192)
39 PF02807 ATP-gua_PtransN: ATP: 31.8 24 0.00052 28.7 1.1 23 303-329 50-72 (76)
40 PF04156 IncA: IncA protein; 30.7 1.4E+02 0.0031 26.0 5.8 22 178-199 43-64 (191)
41 KOG1484 Putative Zn2+ transpor 30.6 78 0.0017 32.6 4.6 92 145-243 218-321 (354)
42 PF12757 DUF3812: Protein of u 30.1 54 0.0012 28.4 3.0 30 319-348 79-108 (126)
43 PF07946 DUF1682: Protein of u 30.1 40 0.00087 32.8 2.5 15 253-267 213-227 (321)
44 PF01769 MgtE: Divalent cation 29.6 1.4E+02 0.0031 24.9 5.4 19 188-206 96-114 (135)
45 PF04678 DUF607: Protein of un 29.6 4.2E+02 0.0091 23.9 8.6 91 113-210 63-157 (180)
46 PRK13428 F0F1 ATP synthase sub 29.4 54 0.0012 33.5 3.3 46 319-365 20-65 (445)
47 PF15050 SCIMP: SCIMP protein 29.0 55 0.0012 29.6 2.9 21 137-157 3-23 (133)
48 PF11166 DUF2951: Protein of u 28.9 43 0.00094 29.0 2.2 27 138-164 72-98 (98)
49 PF06570 DUF1129: Protein of u 27.6 1.7E+02 0.0036 26.5 5.8 49 153-202 155-204 (206)
50 PRK03826 5'-nucleotidase; Prov 27.6 81 0.0017 29.1 3.8 38 169-212 27-66 (195)
51 KOG1029 Endocytic adaptor prot 27.0 47 0.001 37.8 2.6 15 43-57 112-126 (1118)
52 KOG0495 HAT repeat protein [RN 26.3 65 0.0014 36.3 3.4 40 329-368 86-132 (913)
53 PF07332 DUF1469: Protein of u 26.1 3.6E+02 0.0078 21.9 9.5 72 119-191 12-86 (121)
54 PF07219 HemY_N: HemY protein 26.0 1.7E+02 0.0038 23.9 5.2 49 143-191 19-71 (108)
55 PF02118 Srg: Srg family chemo 25.9 60 0.0013 29.1 2.6 49 114-162 95-144 (275)
56 PF11990 DUF3487: Protein of u 25.2 4.6E+02 0.01 22.9 8.6 64 177-251 55-119 (121)
57 COG1824 Permease, similar to c 25.2 67 0.0014 30.7 2.9 26 182-207 153-178 (203)
58 PF00957 Synaptobrevin: Synapt 24.9 1.2E+02 0.0025 23.8 3.8 33 113-145 38-70 (89)
59 PRK13443 atpC F0F1 ATP synthas 24.2 45 0.00097 29.4 1.5 53 300-356 51-103 (136)
60 COG2976 Uncharacterized protei 24.0 68 0.0015 30.8 2.7 27 133-159 13-40 (207)
61 PF12643 MazG-like: MazG-like 23.8 2.3E+02 0.0051 23.8 5.6 54 163-218 18-74 (98)
62 PF04882 Peroxin-3: Peroxin-3; 23.2 27 0.00059 35.4 0.0 26 134-159 4-30 (432)
63 PF10225 DUF2215: Uncharacteri 21.9 2E+02 0.0044 27.4 5.4 54 142-195 103-168 (249)
64 COG1896 Predicted hydrolases o 21.6 1.2E+02 0.0027 27.8 3.9 38 169-212 32-70 (193)
65 COG0713 NuoK NADH:ubiquinone o 21.2 3.4E+02 0.0073 23.7 6.1 65 143-207 14-96 (100)
66 TIGR00400 mgtE Mg2+ transporte 21.2 4.2E+02 0.0091 26.8 7.8 30 183-212 399-428 (449)
67 PF04622 ERG2_Sigma1R: ERG2 an 20.7 1.8E+02 0.0039 27.8 4.8 41 178-218 3-48 (216)
68 PF10211 Ax_dynein_light: Axon 20.6 1.2E+02 0.0026 27.7 3.6 22 346-367 156-177 (189)
69 KOG0163 Myosin class VI heavy 20.5 91 0.002 35.8 3.2 25 53-77 662-686 (1259)
70 PF10828 DUF2570: Protein of u 20.3 89 0.0019 26.1 2.5 27 175-201 1-27 (110)
No 1
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=99.16 E-value=1.1e-10 Score=101.15 Aligned_cols=97 Identities=22% Similarity=0.502 Sum_probs=62.9
Q ss_pred cChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCccccccccccccc--------CceEEEEeecCCccccee
Q 017624 201 INPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNFKPRFRS--------KRCFLIFPIRGSERKGLV 272 (368)
Q Consensus 201 InPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~~Prlrs--------Kr~~liFpl~GserrGLV 272 (368)
=.|..+|..|+.++..+|.|.+.+|.|++ ||-...++-+-..-+|..++ +++.|-|.|+|++++|+|
T Consensus 37 ~s~~~ifn~A~~~i~~d~~v~~~LG~~ik-----ayGe~~~~~Rw~R~R~~~s~~~~d~~G~eh~~m~F~V~G~~~~G~V 111 (145)
T PF08294_consen 37 SSPTRIFNRAVDRIKKDPRVQDLLGEPIK-----AYGEETGRNRWRRNRPIVSHREYDKDGREHMRMKFYVEGPRGKGVV 111 (145)
T ss_dssp -HHHHHHHHHHHHHHH-HHHHHHT----E-----EEE-EEE-SS-EEE----EEEEE-TTS-EEEEEEEEEE-SS-EEEE
T ss_pred CCchHHHHHHHHHHhcCHHHHHHhCCCeE-----EecCCCCCCcccccCCccceEEEcCCCCEEEEEEEEEEeCCCeEEE
Confidence 45889999999999999999999976654 66554442221122444444 689999999999999999
Q ss_pred EEeeeecc--ccceeeEEeeeccCCCCCCceEEEec
Q 017624 273 SVEVKKKK--GQHDTKLLAIDIPMKSGPDQRLFLIG 306 (368)
Q Consensus 273 SvEakKk~--Gqy~~klLAVDIP~~~G~dqRlfL~G 306 (368)
.+|++|.. ++|+|..|+||+| +.+||||+-
T Consensus 112 ~~e~~k~~~~~~~e~~yL~vdv~----g~~ri~l~d 143 (145)
T PF08294_consen 112 HLEMVKDDGSGEYEYRYLYVDVP----GHKRIYLED 143 (145)
T ss_dssp EEEEE--SS-SS-EEEEEEEE-T----TS--EEEE-
T ss_pred EEEEEECCCCCCeeEEEEEEecC----CCeEEEEEc
Confidence 99999999 6999999999996 368999973
No 2
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=99.01 E-value=2.5e-09 Score=86.73 Aligned_cols=103 Identities=24% Similarity=0.367 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHhhhChhhHHHhCC--CCCCCceeEEEEecCcccccccccccccCceEEEEeec
Q 017624 187 IVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAGILEVMGA--PLSGTSLRAYVMSGGGITMKNFKPRFRSKRCFLIFPIR 264 (368)
Q Consensus 187 ~VafaglYlR~R~tInPdaVYr~AMRkLnts~gVlEvMGA--PLtg~~~RAYv~SGGgl~~kk~~PrlrsKr~~liFpl~ 264 (368)
++.+++++.+-...+-.+.+|+.||.+|++||.++|.||. |+..+- ....|-++.. ..++.+-|||+
T Consensus 8 ~~~~~~~~~~~~~~~~~s~~y~~al~~l~~~~~v~~~LGe~ipi~~~~----~~i~G~~~~~-------~g~a~~~~pV~ 76 (116)
T PF08695_consen 8 IGWGVFLFYAINSEKKSSEYYKEALEQLRSNPEVVEALGENIPIKDGW----PWISGSINTS-------KGRADLSFPVK 76 (116)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCHHHHHHcCCCCCcccCc----ccccceeecc-------CcEEEEEEEEE
Confidence 3444455555567778889999999999999999999999 888776 2234445443 66899999999
Q ss_pred CCcccceeEEeeeecccc--ceeeEEeeeccCCCCCCceEEE
Q 017624 265 GSERKGLVSVEVKKKKGQ--HDTKLLAIDIPMKSGPDQRLFL 304 (368)
Q Consensus 265 GserrGLVSvEakKk~Gq--y~~klLAVDIP~~~G~dqRlfL 304 (368)
|++.+|.|-+++.|.+++ +++.-+-|.+ + ++|+|=|
T Consensus 77 G~k~~G~v~~~a~r~~~~~~W~~~~~~v~~--~--~g~~I~L 114 (116)
T PF08695_consen 77 GPKGKGTVYVEATRSGGKDPWEILRLEVEI--D--DGQVIDL 114 (116)
T ss_pred cCCCcEEEEEEEEecCCCCceEEEEEEEEe--C--CCCEEeC
Confidence 999999999999999999 5555555554 3 4666533
No 3
>KOG4836 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.013 Score=55.42 Aligned_cols=94 Identities=19% Similarity=0.381 Sum_probs=71.4
Q ss_pred cChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCcccccccccccccC--------ceEEEEeecCCccccee
Q 017624 201 INPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNFKPRFRSK--------RCFLIFPIRGSERKGLV 272 (368)
Q Consensus 201 InPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~~PrlrsK--------r~~liFpl~GserrGLV 272 (368)
=.|...|..|++++..||.+.+++|+|+-| | |-.+-...+|-+.++ ..-|-|-|.|+|+.|.|
T Consensus 107 ~sp~~ifn~Al~~v~~~~~~~~ifG~~iKg-----f----GE~t~rgRR~hVa~~~ydk~G~~h~~m~Fhv~g~~~~g~v 177 (215)
T KOG4836|consen 107 SSPQTIFNRALELVRANPEVQGIFGESIKG-----F----GEETRRGRRQHVAHHKYDKDGMEHLRMQFHVEGSEPQGHV 177 (215)
T ss_pred CCcHHHHHHHHHHHhcChHHhhHhhhhhhh-----h----hhhhcCcccceeeeeeeecCCceEEEEEEEEEcCCcccch
Confidence 359999999999999999999999998865 2 222222245555443 56688999999999999
Q ss_pred EEeeeeccccceeeEEeeeccCCCCCCceEEEecC
Q 017624 273 SVEVKKKKGQHDTKLLAIDIPMKSGPDQRLFLIGD 307 (368)
Q Consensus 273 SvEakKk~Gqy~~klLAVDIP~~~G~dqRlfL~Gd 307 (368)
.-+++-..|.|.+.-|-||+|.- -|.+++.-
T Consensus 178 ~~~~k~~~g~~~~~flfVdv~~y----pr~tii~~ 208 (215)
T KOG4836|consen 178 FARLKEVDGDYEWDFLFVDVARY----PRTTIILE 208 (215)
T ss_pred hhhhhccCCCCceeEEEEecCCC----ceeEEEcc
Confidence 99999999976666699998543 45555543
No 4
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=0.22 Score=54.95 Aligned_cols=57 Identities=32% Similarity=0.427 Sum_probs=39.8
Q ss_pred cchhhccCcchhhcchHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHhHHHHHH
Q 017624 308 EEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAERKHREEIKK 364 (368)
Q Consensus 308 eeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~ 364 (368)
-+.|..|.-=+..=|--+.+----+.|=.+.+|.||++..|||+||+|||.+.|.||
T Consensus 319 keNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElek 375 (1118)
T KOG1029|consen 319 KENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEK 375 (1118)
T ss_pred HHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777654444444433333333445556778889999999999999999999886
No 5
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=75.04 E-value=3.7 Score=38.09 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHhhc
Q 017624 342 EDEEDAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 342 e~e~d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
..++.+|++.|+.|.|+|+.||..|+
T Consensus 99 kA~~~kEKq~q~EEEKRrqkie~we~ 124 (190)
T PF06936_consen 99 KAEEYKEKQKQEEEEKRRQKIEMWES 124 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888899999987764
No 6
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=71.65 E-value=6.8 Score=33.82 Aligned_cols=55 Identities=33% Similarity=0.440 Sum_probs=34.9
Q ss_pred hhhccCcchhhcchHHHHHhhhchhhcccccchhhH------HHHHHHHHHHHHhHHHHHHhh
Q 017624 310 EYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEE------DAERELQEAERKHREEIKKLE 366 (368)
Q Consensus 310 eY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e~------d~e~e~~e~e~~~~~e~~~~~ 366 (368)
..++|||+.=. -.-|.+||+..-=-.+|+|++.- |++.+++++++++..+.+|.+
T Consensus 60 kV~lGGGl~m~--~~evd~IA~~rVqPvLdeI~erae~qRa~d~e~k~~~~~~k~~~~~~k~r 120 (126)
T PF12757_consen 60 KVNLGGGLFMD--QEEVDAIARKRVQPVLDEIDERAEAQRARDEEIKLDEEERKREHEEWKER 120 (126)
T ss_pred eeeCCCCcccC--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888643 33468899888777777776655 444455555556555555543
No 7
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=66.48 E-value=1.6 Score=37.31 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=36.2
Q ss_pred cCcchhhccCcchhhcchHHHHHhhhchhhcccccchhh----HHHHHHHHHHHHHhHHHHHHhhc
Q 017624 306 GDEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDE----EDAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 306 GdeeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e----~d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
|+.+.|.++||.+ +..+=-|.-++..-| ..+++++- +.+.++++|.|++.|+.+..||.
T Consensus 54 ~~~~~~av~gGf~-~v~~n~v~Il~~~ae--~~edId~l~~~i~~~~~~~~~~~~~~r~~~~~l~~ 116 (122)
T TIGR03166 54 GGEHYVAVDQGIL-VKRGADVEVSVRNAV--GGTELEELEEAVRQEFLTLDEQERSARSAMARLES 116 (122)
T ss_pred CcEEEEEEeeeEE-EEECCEEEEEeceeE--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567888888 665554444433332 23333222 25667788889999999988875
No 8
>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional
Probab=60.45 E-value=3.9 Score=35.80 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=49.5
Q ss_pred eeEEeeeecccccee-----eE-EeeeccCCCCCCceEEEec-CcchhhccCcchhhcchHHHHHhhhchhhcccccchh
Q 017624 271 LVSVEVKKKKGQHDT-----KL-LAIDIPMKSGPDQRLFLIG-DEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIED 343 (368)
Q Consensus 271 LVSvEakKk~Gqy~~-----kl-LAVDIP~~~G~dqRlfL~G-deeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~ 343 (368)
++++-+.-..|++.+ -+ -++++ ..-|+...+ ..+.|.++||.+.--.+--|.-++ .+.+..|+++.
T Consensus 18 v~~V~~~t~~G~~GILp~HaPlit~L~~-----G~l~i~~~~g~~~~~aVsGGfleV~~~n~V~Ila--d~ae~~edID~ 90 (136)
T PRK13447 18 IVSLRAEDASGGFGILPGHADFLTVLRA-----SVVRWRRADGATHYCAVRGGVLRVTGGARVEIAC--REAVLGEDLAR 90 (136)
T ss_pred EEEEEecCCcCceEEcCCCcceEeEecc-----eEEEEEECCCcEEEEEEeCcEEEEecCCEEEEEe--ceeEchhhcCH
Confidence 555666666675444 12 22231 123443333 334578888877643133334444 44444555554
Q ss_pred hH----HHHHHHHHHHHHhHHHHHHhhc
Q 017624 344 EE----DAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 344 e~----d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
++ .+++.++|+||..|+..++||.
T Consensus 91 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~ 118 (136)
T PRK13447 91 LEAVVRAVRAAQLDAARRARVEQTRLHA 118 (136)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44 4556677888888888888874
No 9
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=54.72 E-value=9.3 Score=43.27 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhh
Q 017624 153 VCMLLWRIMFGI 164 (368)
Q Consensus 153 ~c~~lWrimf~i 164 (368)
+.++||.++.+-
T Consensus 229 LG~ILYELLTGk 240 (1021)
T PTZ00266 229 LGCIIYELCSGK 240 (1021)
T ss_pred HHHHHHHHHHCC
Confidence 345566666543
No 10
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=52.74 E-value=14 Score=31.44 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=24.5
Q ss_pred hhchhhcccccchhhHHHHHHHHHHHHHhHHHHHHhhc
Q 017624 330 AATKEFDDLDRIEDEEDAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 330 aa~~ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
|.+++|-...|.|.=+.-...|++....|+++|++||+
T Consensus 60 A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 60 AQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555666666668999999986
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=50.90 E-value=16 Score=41.58 Aligned_cols=40 Identities=33% Similarity=0.376 Sum_probs=22.9
Q ss_pred HHHHHhhhchhhcccc---c-chhhHHHHHHHHHHHHHhHHHHH
Q 017624 324 PVVKAMAATKEFDDLD---R-IEDEEDAERELQEAERKHREEIK 363 (368)
Q Consensus 324 P~vkAmaa~~ef~~~d---~-~e~e~d~e~e~~e~e~~~~~e~~ 363 (368)
-..++.+|++|++..- . .+++.-.|++++|++|+++||-.
T Consensus 822 a~~~~~~Aq~e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~ 865 (1018)
T KOG2002|consen 822 ALEHVAQAQEEDEEERRAKQEKEEEALIEKELEEARRKEEEEKA 865 (1018)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888887655 2 22222345566666666555543
No 12
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=50.35 E-value=23 Score=34.51 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=47.5
Q ss_pred HHhhhhhhhhhcchh-hhHHHHHHHHHHHHHHHHHhh---hhcccChh----------HHHHHHHHHhhhChhhHHHhCC
Q 017624 161 MFGIANTFVGISEGM-AKYGFLALSTAIVAFAGLYIR---SRFTINPD----------KVYRMAMRKLNTSAGILEVMGA 226 (368)
Q Consensus 161 mf~iss~Fv~LSe~m-ak~GFlALsta~VafaglYlR---~R~tInPd----------aVYr~AMRkLnts~gVlEvMGA 226 (368)
||.|||-++-++.+- ..+.+........+-.|-+.+ -|.+.+|+ .|...+.+-|+-|+.++|.||.
T Consensus 61 ~yRisS~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~ 140 (275)
T PF03851_consen 61 FYRISSDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGL 140 (275)
T ss_dssp EEE--TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEecCcccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCeEEecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 688899666666442 223444445666677777777 57888885 7999999999999999999998
Q ss_pred CCCCCceeEEEEecC
Q 017624 227 PLSGTSLRAYVMSGG 241 (368)
Q Consensus 227 PLtg~~~RAYv~SGG 241 (368)
|=+. +.+-.+=-||
T Consensus 141 ~~~~-~~~i~IH~GG 154 (275)
T PF03851_consen 141 DDSP-DHKINIHVGG 154 (275)
T ss_dssp TT-----EEEEE---
T ss_pred Cccc-ccEEEEeeCC
Confidence 7665 4455555555
No 13
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=48.24 E-value=75 Score=27.83 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhhhc-chhhhHHHHHHHHHHHHHHHHHhhhhc-------ccChhHHHHHHH
Q 017624 143 LLLFGAGGVVVCMLLWRIMFGIANTFVGIS-EGMAKYGFLALSTAIVAFAGLYIRSRF-------TINPDKVYRMAM 211 (368)
Q Consensus 143 l~~vga~~~~~c~~lWrimf~iss~Fv~LS-e~mak~GFlALsta~VafaglYlR~R~-------tInPdaVYr~AM 211 (368)
|++++..+.++.|++.+++..-...+-.++ .... .+.+-++++...+...|+|- .|||-.+.|.++
T Consensus 1 Lv~~~~~~a~~~~~l~~~~~~~g~~lp~~p~~~~~---~l~~la~~~~~~a~~vr~~~~~~~~~~~~~P~~aar~~v 74 (138)
T PF11377_consen 1 LVAAAVVGAVAGWLLLQLLESYGGSLPPIPWTAGV---TLLVLAAVELWLAWQVRRRIEIGPGRRQLNPLTAARTLV 74 (138)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 456677777788888555544423333332 1111 12233444555555555444 689998888765
No 14
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=47.51 E-value=44 Score=25.26 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHhhcchhhhhhhhhHHHHHHHH
Q 017624 135 DAFFKGNYLLLFGAGGVVVCMLLW 158 (368)
Q Consensus 135 eaFwkrn~l~~vga~~~~~c~~lW 158 (368)
+.||++|..-++|++.-.++.++|
T Consensus 1 ~e~~~~~~~~iiG~~~G~ila~l~ 24 (51)
T PF10031_consen 1 MEFWKNHRGKIIGGLIGLILALLI 24 (51)
T ss_pred ChHHHHCcchHHHHHHHHHHHHHH
Confidence 369999998888887777766665
No 15
>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=46.93 E-value=7.8 Score=32.02 Aligned_cols=53 Identities=25% Similarity=0.250 Sum_probs=33.2
Q ss_pred ceEEEecCcchhhccCcchhhcchHHHHHhhhchhhcccccchhhHHHHHHHHHHHH
Q 017624 300 QRLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAER 356 (368)
Q Consensus 300 qRlfL~GdeeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~ 356 (368)
-|+...|+.+.|.++||++..-.+ +..-..++-+..+++ |.+.+++.+++|||
T Consensus 47 l~i~~~~~~~~~~v~gGf~~v~~~---~v~Il~~~a~~~e~I-D~~~a~~a~~~Ae~ 99 (101)
T PRK13451 47 VKIKSGDDEYEYKVADGFLHCDGK---NVIIITEEAGREEEI-SPHRYLGARERVER 99 (101)
T ss_pred EEEEECCcEEEEEEeccEEEEECC---EEEEEEeEeEehhhC-CHHHHHHHHHHhhc
Confidence 455555666778889998765333 334444555666666 45566677777765
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=45.71 E-value=17 Score=41.36 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=13.3
Q ss_pred cccChhHHHHHHHHHhhhChhhHHHhCCCCCC
Q 017624 199 FTINPDKVYRMAMRKLNTSAGILEVMGAPLSG 230 (368)
Q Consensus 199 ~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg 230 (368)
+.+||+. |....++..++-+. ..+.|+..
T Consensus 279 L~~dPee--RPSa~QlL~h~~ik-~i~~p~~a 307 (1021)
T PTZ00266 279 LNLSAKE--RPSALQCLGYQIIK-NVGPPVGA 307 (1021)
T ss_pred hcCChhH--CcCHHHHhccHHHh-hcCCCccc
Confidence 3445543 44445555555433 33445443
No 17
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=43.72 E-value=22 Score=33.44 Aligned_cols=112 Identities=16% Similarity=0.262 Sum_probs=63.1
Q ss_pred HhhhhHHHHhh----cchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhcchhhhHH----HH-HHHHHHHHHH--HHHhhh
Q 017624 129 AIGLQIDAFFK----GNYLLLFGAGGVVVCMLLWRIMFGIANTFVGISEGMAKYG----FL-ALSTAIVAFA--GLYIRS 197 (368)
Q Consensus 129 a~~lqleaFwk----rn~l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~mak~G----Fl-ALsta~Vafa--glYlR~ 197 (368)
-+|++|-+||+ |-..++.|+|++.++.++|-...- -++|+...-= -+ |+.+.+=..+ .--+|.
T Consensus 19 ~~g~~laa~w~~~~PREr~mL~g~Ga~L~Lvi~Y~~~Wq------P~~erie~~q~~L~~lra~~a~v~~~a~dv~alra 92 (181)
T COG3149 19 PLGLRLAARWRGLPPRERKMLLGGGAFLLLVILYLLIWQ------PLSERIEQAQAYLQELRALLAYVQQQAPDVRALRA 92 (181)
T ss_pred ccccHHHHHHccCChHHHHHHHHhhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 47899999999 667888888877777766654332 2333332221 11 2223221111 222343
Q ss_pred h---cccChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCccccccc
Q 017624 198 R---FTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNF 248 (368)
Q Consensus 198 R---~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~ 248 (368)
- =+++|.++-.+.-+-+..|--..+-|-. .|+.+...+-.=..=.+-+|
T Consensus 93 ~a~~~t~s~~~l~~~It~S~~~~gl~~~Rl~~--~ge~vQV~i~pvpF~~Ll~W 144 (181)
T COG3149 93 AAPQATPSPAALQGVITASARQHGLSVERLDN--RGEAVQVWIQPVPFAALLPW 144 (181)
T ss_pred cCCCCCCCcHHHHHHHHHHHHhcCceEEEecC--CCceEEEEeccCCHHHHHHH
Confidence 2 5788888888877777766655555543 66666655544332233334
No 18
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=43.60 E-value=69 Score=26.12 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=35.0
Q ss_pred HHhhcchhhhhhhhhHHHHHHHHHH-HHhhhhhhh----hhcchhhhHHHHH-HHHHHHHHHHHHhhhhcccChhHHHHH
Q 017624 136 AFFKGNYLLLFGAGGVVVCMLLWRI-MFGIANTFV----GISEGMAKYGFLA-LSTAIVAFAGLYIRSRFTINPDKVYRM 209 (368)
Q Consensus 136 aFwkrn~l~~vga~~~~~c~~lWri-mf~iss~Fv----~LSe~mak~GFlA-Lsta~VafaglYlR~R~tInPdaVYr~ 209 (368)
+|||+|..++. ++.++|=+ .|+..-+|. ..+=+-..+||.- -=-|++.|.++- .+|..
T Consensus 1 ~ywr~n~~li~------~lL~iWf~vsfg~~~lf~~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi----------~~Ya~ 64 (77)
T TIGR03647 1 AYWRANLRLIA------VLLAIWFVVSFGAGILFADELNSFTFFGFPLGFWFAQQGSIYVFVVLI----------FVYAW 64 (77)
T ss_pred CcHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHcCCeeCCCChHHHHHHhhHHHHHHHHH----------HHHHH
Confidence 58999986533 33344433 444332333 3344456677772 222334444433 25777
Q ss_pred HHHHhhhChh
Q 017624 210 AMRKLNTSAG 219 (368)
Q Consensus 210 AMRkLnts~g 219 (368)
.|.||.+--+
T Consensus 65 ~m~rlD~~~g 74 (77)
T TIGR03647 65 RMNRLDRKYG 74 (77)
T ss_pred HHHHHHHHhC
Confidence 7888775433
No 19
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=42.50 E-value=23 Score=40.09 Aligned_cols=29 Identities=41% Similarity=0.502 Sum_probs=21.5
Q ss_pred cccchhhHHHHHHHHHHHHHhHHHHHHhh
Q 017624 338 LDRIEDEEDAERELQEAERKHREEIKKLE 366 (368)
Q Consensus 338 ~d~~e~e~d~e~e~~e~e~~~~~e~~~~~ 366 (368)
+...||+++|+||++|.||++||.-+-||
T Consensus 137 ~rteeeqqaAarEREe~er~e~ek~~il~ 165 (927)
T PF15402_consen 137 LRTEEEQQAAAREREERERAEREKEAILE 165 (927)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999998776544443
No 20
>COG0397 Uncharacterized conserved protein [Function unknown]
Probab=41.38 E-value=34 Score=36.31 Aligned_cols=105 Identities=23% Similarity=0.353 Sum_probs=79.0
Q ss_pred hhChhhHHHhCCCCCCCceeEEEEecCcccccccccccccCceEEEEeecCCcccc-eeEEeeeeccccceeeEEeeecc
Q 017624 215 NTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNFKPRFRSKRCFLIFPIRGSERKG-LVSVEVKKKKGQHDTKLLAIDIP 293 (368)
Q Consensus 215 nts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~~PrlrsKr~~liFpl~GserrG-LVSvEakKk~Gqy~~klLAVDIP 293 (368)
..++...+++|+=-.......++|-++|--+..|.|.+-.-|.++..+++|.. | ..-+..|-.+ --|
T Consensus 53 ~~~~~~~~~f~G~~v~~~~~plA~~Y~GhQFG~~~~qLGDGR~ilLgE~~~~~--G~~~diqlKGaG----------~TP 120 (488)
T COG0397 53 LDDEAFAEVFGGFQVLNGAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGAD--GELFDIQLKGAG----------RTP 120 (488)
T ss_pred ccChhHHHHhccCCCCCCCChhhhhhcccccccccCccCCceeeeeeeeecCC--CcEEEEEeccCC----------CCC
Confidence 45677889999988777778888888889999999999999999999999988 5 4444443332 234
Q ss_pred CCCCCCceEEEecCcchhhccCcchhhcchHHHHHhhhc
Q 017624 294 MKSGPDQRLFLIGDEEEYKVGDGLIAELRDPVVKAMAAT 332 (368)
Q Consensus 294 ~~~G~dqRlfL~GdeeeY~~gggli~eLRdP~vkAmaa~ 332 (368)
=+-+.|.|..|.+.-+||-+. --+..|==|-.+|++..
T Consensus 121 ySR~gDGRAvLrssiRE~l~S-EAmh~LGIpTTRaL~lv 158 (488)
T COG0397 121 YSRGGDGRAVLRSSIREYLAS-EALHALGIPTTRALSLV 158 (488)
T ss_pred ccccCCcchhhhhhHHHHHHH-HHHHHcCCCCcceeeee
Confidence 455889999999999999874 33444555555666554
No 21
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=40.94 E-value=7.3 Score=32.13 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=38.8
Q ss_pred hhcccChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCcccccc
Q 017624 197 SRFTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKN 247 (368)
Q Consensus 197 ~R~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk 247 (368)
.+.+|++|...+++..=+...+.+++ ....++.++|.-|+|=||.+...
T Consensus 32 v~~Gl~~~~A~~lv~~t~~G~a~ll~--~~~~~~~~l~~~v~tPgG~T~~g 80 (107)
T PF14748_consen 32 VAQGLPREEARKLVAQTFIGAAKLLE--ESGRSPAELRDEVTTPGGTTIAG 80 (107)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHH--HCSS-HHHHHHHHS-TTSHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHhhhccCCCCcHHHH
Confidence 46899999999999999999999998 44458899999999999987654
No 22
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=40.80 E-value=1.2e+02 Score=25.07 Aligned_cols=72 Identities=26% Similarity=0.459 Sum_probs=39.5
Q ss_pred hHHHHhhcchhhhhhhhhHHHHHHHHH-HHHhhhhhhh----hhcchhhhHHHHH-HHHHHHHHHHHHhhhhcccChhHH
Q 017624 133 QIDAFFKGNYLLLFGAGGVVVCMLLWR-IMFGIANTFV----GISEGMAKYGFLA-LSTAIVAFAGLYIRSRFTINPDKV 206 (368)
Q Consensus 133 qleaFwkrn~l~~vga~~~~~c~~lWr-imf~iss~Fv----~LSe~mak~GFlA-Lsta~VafaglYlR~R~tInPdaV 206 (368)
+-++|||+|..++.. +.++|= +.|+....|. ..+=+-..+||+- -=-|++.|..+- .+
T Consensus 2 ~~~~yWr~n~rl~~~------lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi----------~~ 65 (81)
T PF13937_consen 2 PARAYWRKNLRLIAI------LLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILI----------FV 65 (81)
T ss_pred chHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHH----------HH
Confidence 347899999865543 233333 4455433332 2333456788873 223444444443 35
Q ss_pred HHHHHHHhhhChhh
Q 017624 207 YRMAMRKLNTSAGI 220 (368)
Q Consensus 207 Yr~AMRkLnts~gV 220 (368)
|...|.||..-=++
T Consensus 66 Ya~~mnrlD~~~gv 79 (81)
T PF13937_consen 66 YAWRMNRLDRKYGV 79 (81)
T ss_pred HHHHHHHHHHHHCC
Confidence 77888888765443
No 23
>KOG3921 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.18 E-value=40 Score=34.39 Aligned_cols=63 Identities=29% Similarity=0.331 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcchhhhHHHHHHHHHHH--HHHHHHhhhhcccChhHHHHHHHHHhhhChhhH
Q 017624 150 GVVVCMLLWRIMFGIANTFVGISEGMAKYGFLALSTAIV--AFAGLYIRSRFTINPDKVYRMAMRKLNTSAGIL 221 (368)
Q Consensus 150 ~~~~c~~lWrimf~iss~Fv~LSe~mak~GFlALsta~V--afaglYlR~R~tInPdaVYr~AMRkLnts~gVl 221 (368)
-.++||+||-.||-+ -.-.|+|.--|+++|. ..-.-|..+|.=.+|--+--.+.| +|.-+..|
T Consensus 163 ~af~cwll~~~mls~--------p~~vY~g~~~latgI~~l~a~l~y~~~~sL~sPc~L~~~~~~-~~~~~~dL 227 (360)
T KOG3921|consen 163 LAFICWLLWPHMLST--------PLEVYYGTPYLATGILELSADLRYRKSRSLESPCGLGSRILR-LSSKARDL 227 (360)
T ss_pred HHHHHHHHHHHHHhh--------hHHHhcCchhHHHHHHHHHHHHHHhhhhccCCCcccchhhhc-ccccceec
Confidence 457899999999743 2446788444444443 222334334545566555433333 55544443
No 24
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=39.20 E-value=1.6e+02 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=15.5
Q ss_pred hhhHhhhHHHHHHHhhhhHHHH
Q 017624 116 ASVVSSTFSRYREAIGLQIDAF 137 (368)
Q Consensus 116 ~~~~~~~~~~yrea~~lqleaF 137 (368)
.....+.+..+++.+--++..-
T Consensus 361 ~~~~~~~~~~~~~~i~~~~~~~ 382 (511)
T PF09972_consen 361 SKRFYKAFKKWQEAIKKELKER 382 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3566777888888887666654
No 25
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=39.14 E-value=3.6e+02 Score=26.30 Aligned_cols=102 Identities=19% Similarity=0.284 Sum_probs=52.4
Q ss_pred ceEEEEeecCC--cccceeEEeeeeccc--------cceeeEEeeeccCC--CCCCceEEEecCcch----h--------
Q 017624 256 RCFLIFPIRGS--ERKGLVSVEVKKKKG--------QHDTKLLAIDIPMK--SGPDQRLFLIGDEEE----Y-------- 311 (368)
Q Consensus 256 r~~liFpl~Gs--errGLVSvEakKk~G--------qy~~klLAVDIP~~--~G~dqRlfL~Gdeee----Y-------- 311 (368)
+|.|-|.-.|- .+.--|.-.+.+.+| +++-.+-+.|.... .+....+|=+..... |
T Consensus 188 ~~~i~f~~~~~f~~~~~~v~G~I~~~~~~~~~~i~G~W~~~i~~~~~~~~~~~~~~~~lw~~~~~~~~~~~~~~ft~fa~ 267 (354)
T PF01237_consen 188 KAEIEFKPKGWFSGKSNEVEGKIYDSKGKPIYKISGKWDEEIYIKDVKNDSDTGESKLLWDANPLPPNPKKYYGFTQFAI 267 (354)
T ss_dssp EEEEEEETSSSTSSSTTEEEEEEESSGGG-SEEEEEETTSEEEEEETT----GGGEEEEEETTTS-SS--B---------
T ss_pred EEEEEEecCCcccccceeeEEEEEEccCceeEEeeeeeCCeEEEEeccccccCCCceEEEECCCCcccccceeccccccc
Confidence 78888877653 222556666666444 44445555554321 133344444443222 1
Q ss_pred ---------hccCcchhhcchHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHhHHHHHH
Q 017624 312 ---------KVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAERKHREEIKK 364 (368)
Q Consensus 312 ---------~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~ 364 (368)
+..-..-.+..-|..+||.. .+.++++++.++|||.+|+.|.+.++
T Consensus 268 ~LNe~~~~~~~~~~ptDSr~R~d~~al~~-------gd~~~A~~eK~~lEe~QR~~rk~R~~ 322 (354)
T PF01237_consen 268 PLNELTPELEEKLPPTDSRWRPDQRALEN-------GDIDKAQEEKKRLEEKQRADRKERKE 322 (354)
T ss_dssp -G-------G-GS-TTBHHHHHHHHHHHH-------T-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCchhccchHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112333444566677743 34556666677777777777766654
No 26
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.84 E-value=53 Score=32.72 Aligned_cols=83 Identities=16% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHhhhhhhhhhcchhh-hHHHHHHHHHHHHHHHHHhh---hhcccCh----------hHHHHHHHHHhhhChhhHHHhCC
Q 017624 161 MFGIANTFVGISEGMA-KYGFLALSTAIVAFAGLYIR---SRFTINP----------DKVYRMAMRKLNTSAGILEVMGA 226 (368)
Q Consensus 161 mf~iss~Fv~LSe~ma-k~GFlALsta~VafaglYlR---~R~tInP----------daVYr~AMRkLnts~gVlEvMGA 226 (368)
+|.|||-+.=++.+-- -+.+.........-.|-+.+ -|.+++| +.|...+.+.|..|+.+++.||+
T Consensus 68 f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~ 147 (312)
T TIGR00629 68 FYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKL 147 (312)
T ss_pred EEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5778885555553311 12222222333444444444 5777777 47899999999999999999999
Q ss_pred CCC-CCceeEEEEecCcc
Q 017624 227 PLS-GTSLRAYVMSGGGI 243 (368)
Q Consensus 227 PLt-g~~~RAYv~SGGgl 243 (368)
|-+ |.|.+.++=.||..
T Consensus 148 ~~~~~~~~~iviH~Gg~~ 165 (312)
T TIGR00629 148 AEQLNKDAVIIIHIGGAF 165 (312)
T ss_pred CcccCCCceEEEccCcCC
Confidence 864 44566666667754
No 27
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=37.06 E-value=16 Score=31.22 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=45.0
Q ss_pred eeEEeeeecccccee-----eEE-eeeccCCCCCCceEEEecCcchhhccCcchhhcchHHHHHhhhchhhcccccchhh
Q 017624 271 LVSVEVKKKKGQHDT-----KLL-AIDIPMKSGPDQRLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDE 344 (368)
Q Consensus 271 LVSvEakKk~Gqy~~-----klL-AVDIP~~~G~dqRlfL~GdeeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e 344 (368)
.-+|.+.-..|++.+ -++ .++. ..-|+...|+.+.|.++||++..--+ -|.-+ ..+.+..|+++ .
T Consensus 22 v~~V~~p~~~G~~gILp~H~p~it~L~~-----G~l~i~~~~~~~~~~v~gG~~~v~~~-~v~Il--~~~a~~~~diD-~ 92 (127)
T PRK13444 22 VDSLIVPGSEGFFGILPNHAPLVATLGI-----GLLEIRKGEKLKRISVEGGFCEVKDN-QISIL--TDHGALKEDID-H 92 (127)
T ss_pred EEEEEEECCccCeEecCCCcCeEeEecc-----EEEEEEECCeEEEEEEeceEEEEECC-EEEEE--EeEEEehhhCC-H
Confidence 445666677776544 222 2231 13444445555678888888765433 22333 34455566664 4
Q ss_pred HHHHHHHHHHHHHhH
Q 017624 345 EDAERELQEAERKHR 359 (368)
Q Consensus 345 ~d~e~e~~e~e~~~~ 359 (368)
+.+++++++||++-+
T Consensus 93 ~~a~~~~~~Ae~~l~ 107 (127)
T PRK13444 93 EHEKKLLAEAEKLPP 107 (127)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777777664
No 28
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=1.4e+02 Score=30.15 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCh
Q 017624 178 YGFLALSTAIVAFAGLYIRSRFTINP 203 (368)
Q Consensus 178 ~GFlALsta~VafaglYlR~R~tInP 203 (368)
++.+.+++-+|+|..||++.|-.--|
T Consensus 5 v~vlVaa~llV~~i~l~l~~r~raA~ 30 (299)
T KOG3054|consen 5 VAVLVAAALLVAVILLFLWKRRRAAR 30 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45666777889999999886655444
No 29
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=36.70 E-value=1.6e+02 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhh-hhcccChhHHHHHHH
Q 017624 180 FLALSTAIVAFAGLYIR-SRFTINPDKVYRMAM 211 (368)
Q Consensus 180 FlALsta~VafaglYlR-~R~tInPdaVYr~AM 211 (368)
.+.+-..++++-++|+| +-||++||++|-++.
T Consensus 131 ~lllpl~~l~~~ai~~RI~qYGlT~~R~~~~~~ 163 (217)
T PF13687_consen 131 LLLLPLLVLAFYAIWLRISQYGLTPNRYYALLL 163 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455668999999999 899999999998775
No 30
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=36.63 E-value=1.5e+02 Score=28.84 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCcccccccc--ccc-----
Q 017624 180 FLALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNFK--PRF----- 252 (368)
Q Consensus 180 FlALsta~VafaglYlR~R~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~~--Prl----- 252 (368)
.+|++|+++-.+|+.+. .+...|-.+-..||.-+..-+.....+--|++-.++-|=..+-|+.-..+|+ ..+
T Consensus 81 ~lAlAASVAFv~Gl~~~-~~~~~~~~l~~~AlaHV~hE~~~~~~~de~vsl~~VNaKla~fg~~l~~~~pg~V~Y~n~C~ 159 (232)
T PF11859_consen 81 HLALAASVAFVVGLSFG-QLNWGPASLGEHALAHVYHEEPFALHIDEQVSLQQVNAKLAPFGGQLSEKFPGHVYYANHCD 159 (232)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcccHHHHHHHHHhhcHHHHhccccCCCHHHHHHHHHhccccccccCCccEEEEeecC
Confidence 34676665555566654 5666667777778887777766666667777776666655555554333332 222
Q ss_pred --ccCceEEEEeecCCcccceeEEeeeeccccce----e---eEEeeeccCCCCCCceEEEecCcch
Q 017624 253 --RSKRCFLIFPIRGSERKGLVSVEVKKKKGQHD----T---KLLAIDIPMKSGPDQRLFLIGDEEE 310 (368)
Q Consensus 253 --rsKr~~liFpl~GserrGLVSvEakKk~Gqy~----~---klLAVDIP~~~G~dqRlfL~Gdeee 310 (368)
..+-+||+|+ ...|-|++=+--...... | ..-..=+|+. +-.+.|+|+..+
T Consensus 160 F~g~~sLHlV~q----ge~GkVTlFivP~~~~~~~~~~F~d~~~~G~~~~~~---~a~lilVge~~~ 219 (232)
T PF11859_consen 160 FQGVKSLHLVFQ----GEQGKVTLFIVPIESRMVLQEDFADDGYQGIVFPMG---NASLILVGEKGE 219 (232)
T ss_pred cCCCceeEEEEe----cCCCcEEEEEeeccccchhhhhhcccCceEEEEEcC---CeEEEEEecCcc
Confidence 5678999997 234556554332222111 1 1122333444 667888887654
No 31
>PF10693 DUF2499: Protein of unknown function (DUF2499); InterPro: IPR019634 This entry represents proteins found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins. As the family is primarily found in phototrophic organisms it may play a role in photosynthesis.
Probab=36.46 E-value=74 Score=27.01 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=51.1
Q ss_pred HHHHHHHhhhhHHHHhhcchhhhhhhhhHHHHHHHHHHHHhhhh--hhhhhcchhhhHHHHHHHHHH
Q 017624 123 FSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIAN--TFVGISEGMAKYGFLALSTAI 187 (368)
Q Consensus 123 ~~~yrea~~lqleaFwkrn~l~~vga~~~~~c~~lWrimf~iss--~Fv~LSe~mak~GFlALsta~ 187 (368)
+.||.+..|- ..||.-.+..+=+.+.++|..-|.+-++-.+ ..|.+.+.++-+|=.+|..|.
T Consensus 24 v~~y~~~~~~---~~~~~l~~aMlP~l~sa~~ActwH~f~N~~~l~~Lv~lQa~lTl~GN~tL~~Aa 87 (90)
T PF10693_consen 24 VWRYGERTGN---RSWRWLAWAMLPHLISAMCACTWHFFDNAPSLEWLVTLQAALTLLGNITLAIAA 87 (90)
T ss_pred HHHHhhhcCc---hHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777664 4688888888899999999999999999554 889999999999988776654
No 32
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=36.31 E-value=1.5e+02 Score=30.19 Aligned_cols=94 Identities=16% Similarity=0.295 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhHHHH-------hh-cchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHH
Q 017624 123 FSRYREAIGLQIDAF-------FK-GNYLLLFGAGGVVVCMLLWRIMFGIANTFVGISEGMAKYGFLALSTAIVAFAGLY 194 (368)
Q Consensus 123 ~~~yrea~~lqleaF-------wk-rn~l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~mak~GFlALsta~VafaglY 194 (368)
...|+.+|..-+..- |. +++-+++ +++.-++||-..|.+.+.| +|...-.--=+++|+ |++.+..+-
T Consensus 38 ~e~y~~~~E~al~~p~VRRy~~yNs~~fr~~~---a~I~yivlw~~l~Stl~l~-slg~~wv~~Llv~l~-ai~lt~~l~ 112 (308)
T PF14800_consen 38 VEDYVHLMESALLDPQVRRYTLYNSRYFRLLV---AVIFYIVLWANLYSTLQLF-SLGSHWVGWLLVNLA-AIFLTMALI 112 (308)
T ss_pred HHHHHHHHHHhccchhheeeeeecchHHHHHH---HHHHHHHHHHHHHccchhh-hcccHHHHHHHHHHH-HHHHHHHHH
Confidence 456888887777662 11 1112222 4555788999999988777 333322211122333 232222222
Q ss_pred h-----hhhcccChhHHHHHHHHHhhhChhhH
Q 017624 195 I-----RSRFTINPDKVYRMAMRKLNTSAGIL 221 (368)
Q Consensus 195 l-----R~R~tInPdaVYr~AMRkLnts~gVl 221 (368)
+ .+...-|-|..-..|+.+|.+|.-++
T Consensus 113 lv~~~~~rKlN~n~D~rLa~vN~~L~rHkiLL 144 (308)
T PF14800_consen 113 LVFMRHQRKLNMNTDVRLAAVNEALLRHKILL 144 (308)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhhheEE
Confidence 2 24567889999999999999998665
No 33
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=36.17 E-value=8.4 Score=33.52 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=33.1
Q ss_pred cchhhccCcchhhcchHHHHHhhhchhhcccccchhh----HHHHHHHHHHHHHhHHHHHHhhc
Q 017624 308 EEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDE----EDAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 308 eeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e----~d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
.+.|.++||.+. ..+--|.-++..-|.. +++++- +++.+.++|.++.-||.+.+||.
T Consensus 59 ~~~~av~gGf~e-v~~n~V~Ilad~ae~~--edid~~~~~l~~~~~~~~~~~~~~r~~~~~le~ 119 (131)
T PRK06228 59 EVYVAVDEGILV-KTGPDVLVSVRNAIGG--TDLGELREAVEQEFLTLDERERSVRSALAKLES 119 (131)
T ss_pred EEEEEEcceEEE-EECCEEEEEEceeEch--hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344677788774 4554445555444332 233222 24456667777888888888874
No 34
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=35.88 E-value=37 Score=33.11 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=24.5
Q ss_pred hhhcccccchhhH--HHHHHHHHHHHHhHHHHHHhh
Q 017624 333 KEFDDLDRIEDEE--DAERELQEAERKHREEIKKLE 366 (368)
Q Consensus 333 ~ef~~~d~~e~e~--d~e~e~~e~e~~~~~e~~~~~ 366 (368)
|..++++|.||++ |.||=||+-.+|+-.|+.++.
T Consensus 50 k~leeLeelEDded~dDerfLE~YR~kRl~E~r~~~ 85 (240)
T KOG3170|consen 50 KDLEELEELEDDEDSDDERFLEMYRIKRLAEWRATA 85 (240)
T ss_pred ccHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777 566678888888888887653
No 35
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=33.83 E-value=2e+02 Score=29.40 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=25.7
Q ss_pred hccchhhHhhhHHHHHHHhhhhHHHHhhcchhhhhhhhhHHHHHHH
Q 017624 112 FEKPASVVSSTFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLL 157 (368)
Q Consensus 112 ~~~p~~~~~~~~~~yrea~~lqleaFwkrn~l~~vga~~~~~c~~l 157 (368)
+++|.-++-..+.==+.-.|.-+++=|-|-.=-++|++..++++.+
T Consensus 24 l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~ 69 (650)
T PF04632_consen 24 LPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVAL 69 (650)
T ss_pred CCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555555666665555555555666555555433
No 36
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=32.64 E-value=1.5e+02 Score=24.63 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=18.4
Q ss_pred hhhhh-hHHHHHHHHHHHHhhhhhhhh
Q 017624 145 LFGAG-GVVVCMLLWRIMFGIANTFVG 170 (368)
Q Consensus 145 ~vga~-~~~~c~~lWrimf~iss~Fv~ 170 (368)
+.|++ +.+++|++|+++-.|+..|-+
T Consensus 8 l~Ga~~ag~la~~ly~lt~~i~~~fa~ 34 (82)
T PF11282_consen 8 LSGALIAGGLAYGLYFLTTSIAASFAS 34 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44544 556789999999887776643
No 37
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=32.39 E-value=61 Score=26.24 Aligned_cols=23 Identities=39% Similarity=0.798 Sum_probs=13.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhh
Q 017624 142 YLLLFGAGGVVVCMLLWRIMFGI 164 (368)
Q Consensus 142 ~l~~vga~~~~~c~~lWrimf~i 164 (368)
..+++|..++.++.++||+++-.
T Consensus 50 ~~~l~~~~~~l~~~i~~Ri~~E~ 72 (90)
T PF14110_consen 50 LGLLLGPLGFLLGIILWRIMLEF 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666543
No 38
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=32.23 E-value=29 Score=31.50 Aligned_cols=31 Identities=45% Similarity=0.597 Sum_probs=20.1
Q ss_pred cccccchhhHHHHHHHHHHHHHhHHHHHHhh
Q 017624 336 DDLDRIEDEEDAERELQEAERKHREEIKKLE 366 (368)
Q Consensus 336 ~~~d~~e~e~d~e~e~~e~e~~~~~e~~~~~ 366 (368)
+++|+.+|++|.+++|++-.+|+-+|+.+..
T Consensus 46 ~el~~~~d~~~d~~~Le~yR~kRl~el~~~~ 76 (192)
T cd02988 46 DELDEELDEEEDDRFLEEYRRKRLAEMKALA 76 (192)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555678888888888887643
No 39
>PF02807 ATP-gua_PtransN: ATP:guanido phosphotransferase, N-terminal domain; InterPro: IPR022413 This entry represents the N-terminal domain of ATP:guanido phosphotransferase, which has an all-alpha fold consisting of an irregular array of 6 short helices []. ATP:guanido phosphotransferases are a family of structurally and functionally related enzymes [, ] that reversibly catalyse the transfer of phosphate between ATP and various phosphogens. The enzymes belonging to this family include: Glycocyamine kinase (2.7.3.1 from EC), which catalyses the transfer of phosphate from ATP to guanidoacetate. Arginine kinase (2.7.3.3 from EC), which catalyses the transfer of phosphate from ATP to arginine. Taurocyamine kinase (2.7.3.4 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to taurocyamine. Lombricine kinase (2.7.3.5 from EC), an annelid-specific enzyme that catalyses the transfer of phosphate from ATP to lombricine. Smc74, a cercaria-specific enzyme from Schistosoma mansoni []. Creatine kinase (2.7.3.2 from EC) (CK) [, ], which catalyses the reversible transfer of high energy phosphate from ATP to creatine, generating phosphocreatine and ADP. Creatine kinase plays an important role in energy metabolism of vertebrates. There are at least four different, but very closely related, forms of CK. Two isozymes, M (muscle) and B (brain), are cytosolic, while the other two are mitochondrial. In sea urchins there is a flagellar isozyme, which consists of the triplication of a CK-domain. A cysteine residue is implicated in the catalytic activity of these enzymes and the region around this active site residue is highly conserved.; GO: 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 1U6R_B 2CRK_A 2J1Q_A 1QH4_C 1QK1_F 2GL6_F 3L2F_M 3L2D_D 3L2G_B 3L2E_B ....
Probab=31.83 E-value=24 Score=28.66 Aligned_cols=23 Identities=48% Similarity=0.798 Sum_probs=17.7
Q ss_pred EEecCcchhhccCcchhhcchHHHHHh
Q 017624 303 FLIGDEEEYKVGDGLIAELRDPVVKAM 329 (368)
Q Consensus 303 fL~GdeeeY~~gggli~eLRdP~vkAm 329 (368)
..+||+|-|++ ..+|=|||++..
T Consensus 50 ~~AgD~esY~v----F~~lfdpvI~dy 72 (76)
T PF02807_consen 50 IYAGDEESYDV----FKELFDPVIEDY 72 (76)
T ss_dssp ---SSTTHHHH----THHHHHHHHHHH
T ss_pred eeecChhHHHH----HHHHHHHHHHHH
Confidence 56899999995 899999998753
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.69 E-value=1.4e+02 Score=26.00 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 017624 178 YGFLALSTAIVAFAGLYIRSRF 199 (368)
Q Consensus 178 ~GFlALsta~VafaglYlR~R~ 199 (368)
.+.+|++..+++.+..++-.+.
T Consensus 43 ~~~lAlg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 43 IALLALGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4556777777777777775433
No 41
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=30.57 E-value=78 Score=32.57 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=58.1
Q ss_pred hhhhhhHHHHHHH-----HHHHHhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHhhhhcccChhHHHHHHHHHhhhChh
Q 017624 145 LFGAGGVVVCMLL-----WRIMFGIANTFVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSAG 219 (368)
Q Consensus 145 ~vga~~~~~c~~l-----Wrimf~iss~Fv~LSe~mak~GFlALsta~VafaglYlR~R~tInPdaVYr~AMRkLnts~g 219 (368)
.+|.+|+++|.+| |-+.+-++|.|+++.-.+.-+=++-- ++..|..| --=+-+.--+.++|++.+.+|
T Consensus 218 tlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~-----s~~iLLq~--tPp~~~~~l~~cl~~Is~~~g 290 (354)
T KOG1484|consen 218 TLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKY-----SGKILLQR--TPPHLENSLKQCLRQISTLDG 290 (354)
T ss_pred HhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhc--CChhhhhHHHHHHHHhhcccc
Confidence 4688999999887 55777788888877665554444411 12223333 222223445679999999999
Q ss_pred hHHHhCCC-------CCCCceeEEEEecCcc
Q 017624 220 ILEVMGAP-------LSGTSLRAYVMSGGGI 243 (368)
Q Consensus 220 VlEvMGAP-------Ltg~~~RAYv~SGGgl 243 (368)
|+|+--.. .+.+-++.-|.++.+-
T Consensus 291 V~~v~~~hFWt~~~g~~vGtlhl~V~~dade 321 (354)
T KOG1484|consen 291 VTSVQNPHFWTLESGSVVGTLHLQVSSDADE 321 (354)
T ss_pred ceeeccCceeeccCCceEEEEEEEEecCcch
Confidence 99986543 2444566666666654
No 42
>PF12757 DUF3812: Protein of unknown function (DUF3812); InterPro: IPR024527 This family of fungal proteins represents the eisosome 1 family. Eisosome protein 1 is required for normal formation of eisosomes, large cytoplasmic protein assemblies that localize to specialised domains on plasma membrane and mark the site of endocytosis [].
Probab=30.12 E-value=54 Score=28.40 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=16.4
Q ss_pred hhcchHHHHHhhhchhhcccccchhhHHHH
Q 017624 319 AELRDPVVKAMAATKEFDDLDRIEDEEDAE 348 (368)
Q Consensus 319 ~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e 348 (368)
...=+|++.-+...-|=++.-+++...+.+
T Consensus 79 ~~rVqPvLdeI~erae~qRa~d~e~k~~~~ 108 (126)
T PF12757_consen 79 RKRVQPVLDEIDERAEAQRARDEEIKLDEE 108 (126)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777666655555554444444433
No 43
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.10 E-value=40 Score=32.76 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=6.9
Q ss_pred ccCceEEEEeecCCc
Q 017624 253 RSKRCFLIFPIRGSE 267 (368)
Q Consensus 253 rsKr~~liFpl~Gse 267 (368)
..|+|.+-|.|-...
T Consensus 213 ~~~~l~~~~~lp~~~ 227 (321)
T PF07946_consen 213 PKKRLIFSFRLPSSS 227 (321)
T ss_pred cCcEEEEEEEeCCCc
Confidence 344555555444333
No 44
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=29.65 E-value=1.4e+02 Score=24.88 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=11.9
Q ss_pred HHHHHHHhhhhcccChhHH
Q 017624 188 VAFAGLYIRSRFTINPDKV 206 (368)
Q Consensus 188 VafaglYlR~R~tInPdaV 206 (368)
++...-++-.|.++|||-+
T Consensus 96 ~~~~l~~~~~k~g~DPd~~ 114 (135)
T PF01769_consen 96 LGYLLPIILWKIGLDPDNA 114 (135)
T ss_dssp HHHHHHHHHHHTT--GGGS
T ss_pred HHHHHHHHHHhcCCCchHh
Confidence 5555556667999999964
No 45
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=29.62 E-value=4.2e+02 Score=23.87 Aligned_cols=91 Identities=11% Similarity=0.039 Sum_probs=41.0
Q ss_pred ccchhhHhhhHHHHH---HHhhhhHHHHhhcchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhc-chhhhHHHHHHHHHHH
Q 017624 113 EKPASVVSSTFSRYR---EAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIANTFVGIS-EGMAKYGFLALSTAIV 188 (368)
Q Consensus 113 ~~p~~~~~~~~~~yr---ea~~lqleaFwkrn~l~~vga~~~~~c~~lWrimf~iss~Fv~LS-e~mak~GFlALsta~V 188 (368)
.+.+..+...+.... ..|.-+.++.++|-....+|... +=..+|.|++|| -+| ..|--..++...+.++
T Consensus 63 ~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~-~q~~~l~rLTf~------e~sWDvMEPVTYfv~~~~~i 135 (180)
T PF04678_consen 63 RKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLV-VQFGILARLTFW------EYSWDVMEPVTYFVGYGTSI 135 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------ccccchhhhHHHHHhHHHHH
Confidence 334444554444432 33444444444443333333222 223345555555 445 4444444443334444
Q ss_pred HHHHHHhhhhcccChhHHHHHH
Q 017624 189 AFAGLYIRSRFTINPDKVYRMA 210 (368)
Q Consensus 189 afaglYlR~R~tInPdaVYr~A 210 (368)
++-.-|++.+-..+.+.++...
T Consensus 136 ~~y~yfl~t~re~sy~~~~~~~ 157 (180)
T PF04678_consen 136 LGYAYFLYTRREYSYESVFQRR 157 (180)
T ss_pred HHHHHHHHhCCCCChHHHHHHH
Confidence 4445556666666666665443
No 46
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.40 E-value=54 Score=33.51 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=28.8
Q ss_pred hhcchHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHhHHHHHHh
Q 017624 319 AELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAERKHREEIKKL 365 (368)
Q Consensus 319 ~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~~ 365 (368)
--+..|+.+.|...++. -.+++++.+.++.|+++++.++++.+++.
T Consensus 20 kfl~~Pi~~~l~~R~~~-I~~~L~eAe~a~~ea~~~~~~~e~~L~~A 65 (445)
T PRK13428 20 RFVVPPVRRLMAARQDT-VRQQLAESATAADRLAEADQAHTKAVEDA 65 (445)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888877776654 34455566666667766666655555543
No 47
>PF15050 SCIMP: SCIMP protein
Probab=28.96 E-value=55 Score=29.64 Aligned_cols=21 Identities=14% Similarity=0.607 Sum_probs=14.9
Q ss_pred HhhcchhhhhhhhhHHHHHHH
Q 017624 137 FFKGNYLLLFGAGGVVVCMLL 157 (368)
Q Consensus 137 Fwkrn~l~~vga~~~~~c~~l 157 (368)
+|++|+.+|++.++++|...|
T Consensus 3 WWr~nFWiiLAVaII~vS~~l 23 (133)
T PF15050_consen 3 WWRDNFWIILAVAIILVSVVL 23 (133)
T ss_pred hHHhchHHHHHHHHHHHHHHH
Confidence 699999888876666555443
No 48
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=28.92 E-value=43 Score=29.00 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=23.6
Q ss_pred hhcchhhhhhhhhHHHHHHHHHHHHhh
Q 017624 138 FKGNYLLLFGAGGVVVCMLLWRIMFGI 164 (368)
Q Consensus 138 wkrn~l~~vga~~~~~c~~lWrimf~i 164 (368)
||+..+-+||+....+.+++-|.+|||
T Consensus 72 ~KmwilGlvgTi~gsliia~lr~~fgi 98 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLIIALLRTIFGI 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 788888888888888889999999987
No 49
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.63 E-value=1.7e+02 Score=26.53 Aligned_cols=49 Identities=16% Similarity=0.457 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhh-hhhhcchhhhHHHHHHHHHHHHHHHHHhhhhcccC
Q 017624 153 VCMLLWRIMFGIANT-FVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTIN 202 (368)
Q Consensus 153 ~c~~lWrimf~iss~-Fv~LSe~mak~GFlALsta~VafaglYlR~R~tIn 202 (368)
+..++|=+.|.+.++ ...+.=...-+-.+.++ ++..++..|+|+||.|.
T Consensus 155 ~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig-~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 155 LAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIG-VIAFALRFYLKKKYNIT 204 (206)
T ss_pred HHHHHHHHHHHHHHHccccCCcCCCHHHHHHHH-HHHHHHHHHHHHHhCCC
Confidence 344567667777664 23333334434333333 33444557888898874
No 50
>PRK03826 5'-nucleotidase; Provisional
Probab=27.59 E-value=81 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=26.0
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHhhhhc--ccChhHHHHHHHH
Q 017624 169 VGISEGMAKYGFLALSTAIVAFAGLYIRSRF--TINPDKVYRMAMR 212 (368)
Q Consensus 169 v~LSe~mak~GFlALsta~VafaglYlR~R~--tInPdaVYr~AMR 212 (368)
-+++|||.....+|...|.+ -..++ .|||++|+++|+-
T Consensus 27 EsVAeHs~~vAliA~~La~i------~~~~~~~~vd~~rv~~~aL~ 66 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVI------KNRKFGGNLNAERIALLAMY 66 (195)
T ss_pred CccHHHHHHHHHHHHHHHHH------HHHHcCCCCCHHHHHHHHHh
Confidence 47788888877776554432 12234 5999999999874
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.00 E-value=47 Score=37.79 Aligned_cols=15 Identities=7% Similarity=-0.225 Sum_probs=9.4
Q ss_pred cCCCccccccccccc
Q 017624 43 SRGSSNFTTSTSHIH 57 (368)
Q Consensus 43 Sng~Sq~~~~~s~~~ 57 (368)
-.++|-.+|+..-++
T Consensus 112 ~Gsls~~qpL~~a~p 126 (1118)
T KOG1029|consen 112 MGSLSYSQPLPPAAP 126 (1118)
T ss_pred CCCcCcCCCCCcccc
Confidence 446677777776554
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=26.30 E-value=65 Score=36.29 Aligned_cols=40 Identities=35% Similarity=0.469 Sum_probs=28.8
Q ss_pred hhhchhhcccccchhh-------HHHHHHHHHHHHHhHHHHHHhhcC
Q 017624 329 MAATKEFDDLDRIEDE-------EDAERELQEAERKHREEIKKLEKS 368 (368)
Q Consensus 329 maa~~ef~~~d~~e~e-------~d~e~e~~e~e~~~~~e~~~~~~~ 368 (368)
+-++.+||+.|+.+|. +..||.-+..|+|.+|||||.+++
T Consensus 86 lfa~~pyD~eDeEAd~Iy~sid~rld~rrK~rre~k~ke~iE~y~~e 132 (913)
T KOG0495|consen 86 LFASAPYDDEDEEADAIYDSIDLRLDERRKERREKKLKEEIEKYRKE 132 (913)
T ss_pred hhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456677777765543 366777788889999999988764
No 53
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=26.14 E-value=3.6e+02 Score=21.93 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=35.4
Q ss_pred HhhhHHHHHHHhhhhHHHHhhcchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhcch---hhhHHHHHHHHHHHHHH
Q 017624 119 VSSTFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIANTFVGISEG---MAKYGFLALSTAIVAFA 191 (368)
Q Consensus 119 ~~~~~~~yrea~~lqleaFwkrn~l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~---mak~GFlALsta~Vafa 191 (368)
+..-+.-.-|-..++++.-.++-.- .++..++++...+.=++|........+.+. ..-.+++..+...+..+
T Consensus 12 ~~~lv~~~i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la 86 (121)
T PF07332_consen 12 LSTLVRTRIELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLA 86 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 3344444556666666666655432 222233333333444566666666777432 23356665444444333
No 54
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.02 E-value=1.7e+02 Score=23.92 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=29.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhhhcch----hhhHHHHHHHHHHHHHH
Q 017624 143 LLLFGAGGVVVCMLLWRIMFGIANTFVGISEG----MAKYGFLALSTAIVAFA 191 (368)
Q Consensus 143 l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~----mak~GFlALsta~Vafa 191 (368)
.+++-.+.+++++++||+...+-++--.++.. --+=|--+|..++++++
T Consensus 19 ~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~al~ 71 (108)
T PF07219_consen 19 ALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLIALA 71 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677788888877776654444322 33345556777777765
No 55
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=25.86 E-value=60 Score=29.06 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=39.4
Q ss_pred cchhhHhhhHHHHHHHhh-hhHHHHhhcchhhhhhhhhHHHHHHHHHHHH
Q 017624 114 KPASVVSSTFSRYREAIG-LQIDAFFKGNYLLLFGAGGVVVCMLLWRIMF 162 (368)
Q Consensus 114 ~p~~~~~~~~~~yrea~~-lqleaFwkrn~l~~vga~~~~~c~~lWrimf 162 (368)
|.....--++.|+--++. ..=|.+|+|++..++....+..+...|.+..
T Consensus 95 Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~ 144 (275)
T PF02118_consen 95 QYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFI 144 (275)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHc
Confidence 455566666778877766 6779999999988888888888899999887
No 56
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=25.24 E-value=4.6e+02 Score=22.87 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccChh-HHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCcccccccccc
Q 017624 177 KYGFLALSTAIVAFAGLYIRSRFTINPD-KVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNFKPR 251 (368)
Q Consensus 177 k~GFlALsta~VafaglYlR~R~tInPd-aVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~~Pr 251 (368)
-.+.+......|.+++-++++-=+-.|| .+|+....++.++-. +| . ..|+..-|.|.++.-+|+
T Consensus 55 pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g~----l~------~-~~lI~~sg~W~~rR~~~~ 119 (121)
T PF11990_consen 55 PTGALLGPILGVFVGGKLLARLKRGKPEGYLYRRLQWRLARRGP----LG------G-SRLITRSGAWSLRRTRRR 119 (121)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHcCCchhHHHHHHHHHHHHhcc----cC------C-CCcEEeeCcEecccccCC
Confidence 3445556667778888899988889999 888888877776522 11 1 345656666877765543
No 57
>COG1824 Permease, similar to cation transporters [Inorganic ion transport and metabolism]
Probab=25.16 E-value=67 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhcccChhHHH
Q 017624 182 ALSTAIVAFAGLYIRSRFTINPDKVY 207 (368)
Q Consensus 182 ALsta~VafaglYlR~R~tInPdaVY 207 (368)
+.....|+++..+.-.|.++|||.|.
T Consensus 153 ~~~v~~va~~la~~s~R~glDPDnvv 178 (203)
T COG1824 153 TVLVLLVAVLLAIASYRLGLDPDNVV 178 (203)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 34455667777788899999999874
No 58
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.87 E-value=1.2e+02 Score=23.82 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=20.6
Q ss_pred ccchhhHhhhHHHHHHHhhhhHHHHhhcchhhh
Q 017624 113 EKPASVVSSTFSRYREAIGLQIDAFFKGNYLLL 145 (368)
Q Consensus 113 ~~p~~~~~~~~~~yrea~~lqleaFwkrn~l~~ 145 (368)
+|--.....+..=.+.|-.+.-..+|+++.+.+
T Consensus 38 ~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~ 70 (89)
T PF00957_consen 38 DKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYI 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445556788888888888876443
No 59
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=24.21 E-value=45 Score=29.39 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=27.5
Q ss_pred ceEEEecCcchhhccCcchhhcchHHHHHhhhchhhcccccchhhHHHHHHHHHHHH
Q 017624 300 QRLFLIGDEEEYKVGDGLIAELRDPVVKAMAATKEFDDLDRIEDEEDAERELQEAER 356 (368)
Q Consensus 300 qRlfL~GdeeeY~~gggli~eLRdP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~ 356 (368)
-|+.-.++.+.|.++||.+..-.|= |.-++..-|. .++++ .+.+++.+++||+
T Consensus 51 v~i~~~~~~~~~avsgGf~eV~~n~-V~Ilad~a~~--~edID-~~~a~~a~~~Ae~ 103 (136)
T PRK13443 51 LRAHGPSGTQEYAVTGGFAEINATS-ISVLAEKAIP--VEELT-GAVLDEFIAEARE 103 (136)
T ss_pred EEEEECCCeEEEEEcceEEEEECCE-EEEEeCeeEE--hhhCC-HHHHHHHHHHHHH
Confidence 4454445556688888888776663 3444444333 34442 3333334444433
No 60
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.03 E-value=68 Score=30.85 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=16.1
Q ss_pred hHHHHhhcchhhhh-hhhhHHHHHHHHH
Q 017624 133 QIDAFFKGNYLLLF-GAGGVVVCMLLWR 159 (368)
Q Consensus 133 qleaFwkrn~l~~v-ga~~~~~c~~lWr 159 (368)
+|-.|||+|...+| |....+..++=||
T Consensus 13 ~ik~wwkeNGk~li~gviLg~~~lfGW~ 40 (207)
T COG2976 13 AIKDWWKENGKALIVGVILGLGGLFGWR 40 (207)
T ss_pred HHHHHHHHCCchhHHHHHHHHHHHHHHH
Confidence 56789999995443 3333333444565
No 61
>PF12643 MazG-like: MazG-like family
Probab=23.78 E-value=2.3e+02 Score=23.84 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=34.7
Q ss_pred hhhhhhhhhcchhh--hHHHH-HHHHHHHHHHHHHhhhhcccChhHHHHHHHHHhhhCh
Q 017624 163 GIANTFVGISEGMA--KYGFL-ALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNTSA 218 (368)
Q Consensus 163 ~iss~Fv~LSe~ma--k~GFl-ALsta~VafaglYlR~R~tInPdaVYr~AMRkLnts~ 218 (368)
-++.+|..+.++.. +=-.. .||..+++|- .|..|++|||..+=++...||..+.
T Consensus 18 el~elfq~~~~~~~~~~e~i~deLAdvii~~y--lLa~rLGid~~~lD~~i~~KL~~~~ 74 (98)
T PF12643_consen 18 ELLELFQWLTSGSEVAQEAIKDELADVIIYCY--LLADRLGIDFRELDEIIKEKLKKNI 74 (98)
T ss_pred HHHHHHhhcccCcchHHHHHHHHHHHHHHHHH--HHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 45567888876665 11222 3554444442 3446899998888888888887765
No 62
>PF04882 Peroxin-3: Peroxin-3; InterPro: IPR006966 Peroxin 3 (Pex3p), also known as Peroxisomal biogenesis factor 3, has been identified and characterised as a peroxisomal membrane protein in yeasts and mammals []. Two putative peroxisomal membrane-bound Pex3p homologues have also been found in Arabidopsis thaliana []. They possess a membrane peroxisomal targeting signal. Pex3p is an integral membrane protein of peroxisomes, exposing its N- and C-terminal parts to the cytosol []. Peroxin is involved in peroxisome biosynthesis and integrity; it assembles membrane vesicles before the matrix proteins are translocated. In humans, defects in PEX3 are the cause of peroxisome biogenesis disorders [], which include Zellweger syndrome (ZWS), neonatal adrenoleukodystrophy (NALD), infantile Refsum disease (IRD), and classical rhizomelic chondrodysplasia punctata (RCDP). These are peroxisomal disorders that are the result of proteins failing to be imported into the peroxisome.; GO: 0007031 peroxisome organization, 0005779 integral to peroxisomal membrane; PDB: 3MK4_A 3AJB_A.
Probab=23.20 E-value=27 Score=35.42 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHhhcch-hhhhhhhhHHHHHHHHH
Q 017624 134 IDAFFKGNY-LLLFGAGGVVVCMLLWR 159 (368)
Q Consensus 134 leaFwkrn~-l~~vga~~~~~c~~lWr 159 (368)
+-.||+||. .+++++|.+|.+|++-+
T Consensus 4 ~~~f~~Rhr~k~~~~~~v~g~~y~~~~ 30 (432)
T PF04882_consen 4 LRSFFRRHRRKIIVTGGVVGGGYLLYQ 30 (432)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 457999999 66777777777776544
No 63
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=21.87 E-value=2e+02 Score=27.44 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHH------------HHHHHHHhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHh
Q 017624 142 YLLLFGAGGVVVCM------------LLWRIMFGIANTFVGISEGMAKYGFLALSTAIVAFAGLYI 195 (368)
Q Consensus 142 ~l~~vga~~~~~c~------------~lWrimf~iss~Fv~LSe~mak~GFlALsta~VafaglYl 195 (368)
+++++|+..+.+|+ ++=..+=-|+-+++-.|-..-.+++.++.++++.....+.
T Consensus 103 yv~~~G~vsf~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l~~~~l~~~ 168 (249)
T PF10225_consen 103 YVLVVGLVSFAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAIILLLLWKSLYYP 168 (249)
T ss_pred HHHHHHHHHHHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhH
Confidence 46778888999999 7766777777788888888888888766655554444433
No 64
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=21.59 E-value=1.2e+02 Score=27.80 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=26.6
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHHHhhhhc-ccChhHHHHHHHH
Q 017624 169 VGISEGMAKYGFLALSTAIVAFAGLYIRSRF-TINPDKVYRMAMR 212 (368)
Q Consensus 169 v~LSe~mak~GFlALsta~VafaglYlR~R~-tInPdaVYr~AMR 212 (368)
-+++++|...+++|+..+.+. .... .|||++++++||-
T Consensus 32 eSvaeHs~~va~la~~la~~~------~~~~~~vn~~k~~~~AL~ 70 (193)
T COG1896 32 ESVAEHSFRVAILALLLADIL------NAKGGEVNPEKVALMALV 70 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHH------HhcccccCHHHHHHHHHh
Confidence 467788888888866554432 2212 3899999999984
No 65
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=21.18 E-value=3.4e+02 Score=23.69 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=37.3
Q ss_pred hhhhhhhhHH------HHHHHHHHHHhhhh-hhhhhcchhhh-----HHHHH--HHHH--HHHHH--HHHhhhhcccChh
Q 017624 143 LLLFGAGGVV------VCMLLWRIMFGIAN-TFVGISEGMAK-----YGFLA--LSTA--IVAFA--GLYIRSRFTINPD 204 (368)
Q Consensus 143 l~~vga~~~~------~c~~lWrimf~iss-~Fv~LSe~mak-----~GFlA--Lsta--~Vafa--glYlR~R~tInPd 204 (368)
++.+|..|+. ...+--++|++-++ -||..|.-... |+++. +++| +|+.+ ..+.|.|-|||-|
T Consensus 14 LF~IGl~Gv~~rrN~i~~LmSiElmlNAvnl~~Va~~~y~~~~~gQvfaifvitvAAaE~aVGLailv~~yR~~~ti~id 93 (100)
T COG0713 14 LFTIGLYGLLTRRNLIVMLMSIELMLNAVNLNFVAFSSYLGDLDGQVFAIFVITVAAAEAAVGLAILVALYRRRGTINID 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccc
Confidence 4556666653 23445578888777 56666543332 55554 3333 33333 3456779999988
Q ss_pred HHH
Q 017624 205 KVY 207 (368)
Q Consensus 205 aVY 207 (368)
.+=
T Consensus 94 ~l~ 96 (100)
T COG0713 94 DLN 96 (100)
T ss_pred HHH
Confidence 763
No 66
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=21.17 E-value=4.2e+02 Score=26.84 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhhcccChhHHHHHHHH
Q 017624 183 LSTAIVAFAGLYIRSRFTINPDKVYRMAMR 212 (368)
Q Consensus 183 Lsta~VafaglYlR~R~tInPdaVYr~AMR 212 (368)
+.+++++...-++-.|+++||+-+-.-.+.
T Consensus 399 ~~~~~~G~~lp~~~~k~~~DPa~~s~p~it 428 (449)
T TIGR00400 399 TVAKILGGLLPIVAKLLKLDPALMSGPLIT 428 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhhhhhHHH
Confidence 445556566667778999999976544443
No 67
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=20.68 E-value=1.8e+02 Score=27.77 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHH----h-hhhcccChhHHHHHHHHHhhhCh
Q 017624 178 YGFLALSTAIVAFAGLY----I-RSRFTINPDKVYRMAMRKLNTSA 218 (368)
Q Consensus 178 ~GFlALsta~VafaglY----l-R~R~tInPdaVYr~AMRkLnts~ 218 (368)
+-++++..++++....+ + .+.|-+||+.+..+|-+-+.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~l~~~~YiFdp~~l~~ia~~~ia~~~ 48 (216)
T PF04622_consen 3 LRFLALFLAVIAVLLYALQYWLLPKSYIFDPKVLHEIAKKAIARHP 48 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHhhcC
Confidence 44555555555444333 3 36779999999999998888664
No 68
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=20.65 E-value=1.2e+02 Score=27.69 Aligned_cols=22 Identities=50% Similarity=0.588 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhc
Q 017624 346 DAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 346 d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
..+..+++.+.+|++||+.|.+
T Consensus 156 ~~~e~~~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 156 REEELRQEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778889999988764
No 69
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=20.51 E-value=91 Score=35.76 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.3
Q ss_pred ccccccCCCCCcccccccchhhhcc
Q 017624 53 TSHIHSTKLPSKFTSANLGLAQILS 77 (368)
Q Consensus 53 ~s~~~s~~f~skpts~n~glsq~l~ 77 (368)
|+-|.|.|=.|+-++--|-=||||+
T Consensus 662 t~FiRCiKPN~kM~~~~FeGs~iLs 686 (1259)
T KOG0163|consen 662 THFIRCIKPNSKMIDRHFEGSAILS 686 (1259)
T ss_pred CeeEEeecCccccccccccHHHHHH
Confidence 5557898888999999999999988
No 70
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=20.26 E-value=89 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhccc
Q 017624 175 MAKYGFLALSTAIVAFAGLYIRSRFTI 201 (368)
Q Consensus 175 mak~GFlALsta~VafaglYlR~R~tI 201 (368)
|++|...+|+.-+|+.+|.-+.....|
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~qs~~i 27 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWYQSQRI 27 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333333333
Done!