Query 017624
Match_columns 368
No_of_seqs 24 out of 26
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 17:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ciu_A TIM21P, import inner me 98.8 2.8E-08 9.4E-13 84.6 10.8 100 203-306 7-119 (127)
2 3hd7_A Vesicle-associated memb 45.6 23 0.00079 27.8 4.2 47 110-156 37-84 (91)
3 3tc3_A UV damage endonuclease; 45.3 11 0.00038 35.9 2.7 67 161-227 76-156 (310)
4 2kog_A Vesicle-associated memb 40.4 19 0.00064 29.8 3.0 49 111-161 66-114 (119)
5 4bbk_A Kindlin-1, fermitin fam 36.7 26 0.0009 31.3 3.5 49 256-312 69-118 (165)
6 2q5z_A MAZG, hypothetical prot 35.2 35 0.0012 27.2 3.8 30 187-216 81-110 (114)
7 2gta_A Hypothetical protein YP 33.1 33 0.0011 27.5 3.3 31 187-217 69-99 (119)
8 3rvy_A ION transport protein; 28.1 15 0.00051 32.2 0.5 12 355-366 265-276 (285)
9 3gt0_A Pyrroline-5-carboxylate 28.1 1.2E+02 0.004 25.8 6.1 50 197-248 191-240 (247)
10 1gmj_A ATPase inhibitor; coile 26.0 45 0.0015 26.9 2.9 54 314-367 11-65 (84)
11 2q73_A MAZG, hypothetical prot 26.0 63 0.0021 25.0 3.7 32 186-217 60-91 (100)
No 1
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=98.81 E-value=2.8e-08 Score=84.61 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHhhhChhhHHHhCC-C--CCCCceeEEEEe-cC-ccc-c-----cccccccccCceEEEEeecCCcccce
Q 017624 203 PDKVYRMAMRKLNTSAGILEVMGA-P--LSGTSLRAYVMS-GG-GIT-M-----KNFKPRFRSKRCFLIFPIRGSERKGL 271 (368)
Q Consensus 203 PdaVYr~AMRkLnts~gVlEvMGA-P--Ltg~~~RAYv~S-GG-gl~-~-----kk~~PrlrsKr~~liFpl~GserrGL 271 (368)
|-.+|-.|+.|+..+|.|.+++|- | =.+..++||--. .+ -|+ . ..+.-.--.+.+.|-|.|+|+.++|.
T Consensus 7 ~t~~FnrAv~rIk~Dp~v~~~L~~~~G~~~~~~IkayGe~~t~~rw~R~Rpi~s~~~~d~dG~eH~rm~F~VeG~~~~G~ 86 (127)
T 2ciu_A 7 DTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWTRNRPIVSTKKLDKEGRTHHYMRFHVESKKKIAL 86 (127)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCEEECCCCEEEEECTTSCEEEEEEEEEECSSCEEE
T ss_pred chhHHHHHHHHHhcCHHHHHHhcccCCCCCCcceEEecccCCCChhhhccccceEEEECCCCCEEEEEEEEEEcCCCcEE
Confidence 678999999999999999999962 1 244678899775 33 221 1 11122223358899999999999999
Q ss_pred eEEeeeec--cccceeeEEeeeccCCCCCCceEEEec
Q 017624 272 VSVEVKKK--KGQHDTKLLAIDIPMKSGPDQRLFLIG 306 (368)
Q Consensus 272 VSvEakKk--~Gqy~~klLAVDIP~~~G~dqRlfL~G 306 (368)
|.+|++|. .++|+|..|+||||. .+||||+-
T Consensus 87 V~le~~k~~~~~~~ef~Yl~vDV~g----~~Ri~Le~ 119 (127)
T 2ciu_A 87 VHLEAKESKQNYQPDFINMYVDVPG----EKRYYLIK 119 (127)
T ss_dssp EEEEEECCSSCSSCEEEEEEEECTT----SCCEEEEC
T ss_pred EEEEEEecCCCCceEEEEEEEEeCC----CceEEEEC
Confidence 99999994 479999999999975 59999986
No 2
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=45.62 E-value=23 Score=27.76 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=30.0
Q ss_pred hhhccchhhHhhhHHHHHHHhhhhHHHHhhcchhhh-hhhhhHHHHHH
Q 017624 110 KVFEKPASVVSSTFSRYREAIGLQIDAFFKGNYLLL-FGAGGVVVCML 156 (368)
Q Consensus 110 ~~~~~p~~~~~~~~~~yrea~~lqleaFwkrn~l~~-vga~~~~~c~~ 156 (368)
.+.+|.-..-..+..=++.|-.|.-..+||+..+.+ +|++++++.++
T Consensus 37 ~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 37 ELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345565555556666677888999999999877544 44444444333
No 3
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=45.34 E-value=11 Score=35.93 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=46.0
Q ss_pred HHhhhhhhhhhcc-hhhhHHHHHHHHHHHHHHHHHhh---hhcccChh----------HHHHHHHHHhhhChhhHHHhCC
Q 017624 161 MFGIANTFVGISE-GMAKYGFLALSTAIVAFAGLYIR---SRFTINPD----------KVYRMAMRKLNTSAGILEVMGA 226 (368)
Q Consensus 161 mf~iss~Fv~LSe-~mak~GFlALsta~VafaglYlR---~R~tInPd----------aVYr~AMRkLnts~gVlEvMGA 226 (368)
+|.|||-+.-+.. --..+-+........+-+|-+.| -|.+.+|+ .|...+.+-|+-|+.++|.||.
T Consensus 76 ~yRiSS~l~P~~thp~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~HPgqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~ 155 (310)
T 3tc3_A 76 FFRISSNTIPLASHPKFHVNWKDKLSHILGDIGDFIKENSIRISMHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGI 155 (310)
T ss_dssp EEECCTTSSTTTTSTTCCCCHHHHTHHHHHHHHHHHHHTTCEEEECCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCcccCCCccccccccchHHHHHHHHHHHHHHHHHcCcEEEecCCCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5778884433432 12223333333455566677766 67888885 5999999999999999999998
Q ss_pred C
Q 017624 227 P 227 (368)
Q Consensus 227 P 227 (368)
+
T Consensus 156 ~ 156 (310)
T 3tc3_A 156 E 156 (310)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=40.44 E-value=19 Score=29.82 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=28.2
Q ss_pred hhccchhhHhhhHHHHHHHhhhhHHHHhhcchhhhhhhhhHHHHHHHHHHH
Q 017624 111 VFEKPASVVSSTFSRYREAIGLQIDAFFKGNYLLLFGAGGVVVCMLLWRIM 161 (368)
Q Consensus 111 ~~~~p~~~~~~~~~~yrea~~lqleaFwkrn~l~~vga~~~~~c~~lWrim 161 (368)
+.+|--.....+..-++.|-.|.-..+||+..+.++ +++++++++|=|+
T Consensus 66 L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~ii--i~~iv~iii~iIi 114 (119)
T 2kog_A 66 LDDRADALQAGASQFETSAAKLKRKYWWKNLKMMII--LGVICAIILIIII 114 (119)
T ss_dssp CCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 344444444445555677888888888888775444 3333344444333
No 5
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=36.71 E-value=26 Score=31.26 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=35.7
Q ss_pred ceEEEEeecCCcccceeEEeeeeccccceeeEEeeeccCCCCCCceEEEecCcc-hhh
Q 017624 256 RCFLIFPIRGSERKGLVSVEVKKKKGQHDTKLLAIDIPMKSGPDQRLFLIGDEE-EYK 312 (368)
Q Consensus 256 r~~liFpl~GserrGLVSvEakKk~Gqy~~klLAVDIP~~~G~dqRlfL~Gdee-eY~ 312 (368)
-|--.+.|+|-| |+-+|.=.++.|.|+|+ ||.+ .....+||..|.| +|.
T Consensus 69 eP~~~inLrGCE----VtPDVnva~~Kf~ikL~---ip~~-~gm~e~~LrcdsE~QYa 118 (165)
T 4bbk_A 69 EPIEKLNLRGCE----IVPDVNVSGRKFGIKLL---IPVA-DGMNEVYLRCDHEDQYA 118 (165)
T ss_dssp CCSEEEECTTCE----EEEEEETTTTEEEEEEE---EEET-TEEEEEEEEESSHHHHH
T ss_pred CCceEEecCccE----EecccccccceeeEEEe---cCCC-CcceeeeeecCCHHHHH
Confidence 455667788866 67777778899999996 3444 4478899999955 454
No 6
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=35.24 E-value=35 Score=27.22 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHhhh
Q 017624 187 IVAFAGLYIRSRFTINPDKVYRMAMRKLNT 216 (368)
Q Consensus 187 ~VafaglYlR~R~tInPdaVYr~AMRkLnt 216 (368)
=|-|..+-+...++|||+.+.+..|.|..+
T Consensus 81 DvL~~l~~LA~~lgiDle~al~~k~~K~~~ 110 (114)
T 2q5z_A 81 DVLYYVCALANIHGVNLEKTRELKEVLNKV 110 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344445566678999999999999998754
No 7
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=33.06 E-value=33 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHhhhC
Q 017624 187 IVAFAGLYIRSRFTINPDKVYRMAMRKLNTS 217 (368)
Q Consensus 187 ~VafaglYlR~R~tInPdaVYr~AMRkLnts 217 (368)
=|-|..+.+...++|||+.+.+.+|.|+.+-
T Consensus 69 DvLf~lv~lA~~l~idle~al~~~~~K~~~R 99 (119)
T 2gta_A 69 DVLFVLVCLANSLDISLEEAHDRVMHKFNTR 99 (119)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 3444555566789999999999999998754
No 8
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=28.12 E-value=15 Score=32.24 Aligned_cols=12 Identities=50% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHhHHHHHHhh
Q 017624 355 ERKHREEIKKLE 366 (368)
Q Consensus 355 e~~~~~e~~~~~ 366 (368)
-++-++|+++|+
T Consensus 265 ~~~l~~~~~~l~ 276 (285)
T 3rvy_A 265 IIKLREEIVELK 276 (285)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444554444
No 9
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=28.06 E-value=1.2e+02 Score=25.80 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=25.4
Q ss_pred hhcccChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecCccccccc
Q 017624 197 SRFTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGGGITMKNF 248 (368)
Q Consensus 197 ~R~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGGgl~~kk~ 248 (368)
.+.++||+.+++++..=+..++..++.-|. .+.++|--|+|-||.|....
T Consensus 191 ~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~~--~p~~l~~~v~spgG~t~~gl 240 (247)
T 3gt0_A 191 VLDGMPRNQAYKFAAQAVLGSAKMVLETGI--HPGELKDMVCSPGGTTIEAV 240 (247)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHSCC----------------------
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHhcCCCCchHHHHH
Confidence 489999999999999888888888776554 68999999999999887653
No 10
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=26.04 E-value=45 Score=26.90 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred cCcchhhcchHHHHHhhhch-hhcccccchhhHHHHHHHHHHHHHhHHHHHHhhc
Q 017624 314 GDGLIAELRDPVVKAMAATK-EFDDLDRIEDEEDAERELQEAERKHREEIKKLEK 367 (368)
Q Consensus 314 gggli~eLRdP~vkAmaa~~-ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~~~~ 367 (368)
|||-|.+--+.+-+-=+|.+ +|-+..+.|.=..-...+++.-.+|++||+.||+
T Consensus 11 gggsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 11 SAGAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665566655444433 3334333333332222233333456666666654
No 11
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=26.01 E-value=63 Score=25.03 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhcccChhHHHHHHHHHhhhC
Q 017624 186 AIVAFAGLYIRSRFTINPDKVYRMAMRKLNTS 217 (368)
Q Consensus 186 a~VafaglYlR~R~tInPdaVYr~AMRkLnts 217 (368)
|=|-|..+-|..+++|||+.+.+..|.+-..-
T Consensus 60 gDvL~~l~~lA~~lgiDle~al~~k~~~n~~k 91 (100)
T 2q73_A 60 YDVLYYVCALANIHGVNLEKTHELKEVLNKVK 91 (100)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 33445556666799999999999999886543
Done!