Query 017624
Match_columns 368
No_of_seqs 24 out of 26
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 17:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017624.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017624hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j5ya1 a.4.5.1 (A:3-67) Putat 42.2 9.6 0.0007 25.9 3.1 39 194-241 27-65 (65)
2 d2gtaa1 a.204.1.2 (A:1-98) Hyp 41.9 9.5 0.00069 28.0 3.3 67 143-216 32-98 (98)
3 d2oi8a2 a.121.1.1 (A:87-216) P 38.8 16 0.0012 27.3 4.3 62 131-215 67-128 (130)
4 d2ieaa3 c.48.1.1 (A:701-886) P 29.3 14 0.001 30.1 2.7 24 194-217 136-159 (186)
5 d1ryia1 c.3.1.2 (A:1-218,A:307 28.9 7 0.00051 30.5 0.6 26 139-164 2-28 (276)
6 d1zhxa1 d.338.1.1 (A:2-434) Ox 28.8 25 0.0018 32.0 4.6 35 323-364 317-351 (433)
7 d3ebya1 d.17.4.4 (A:6-162) Put 24.4 5.7 0.00041 29.3 -0.7 29 235-263 127-157 (157)
8 d1ykhb1 a.252.1.1 (B:2-130) RN 22.8 24 0.0017 27.6 2.8 31 336-366 91-122 (129)
9 d1qh4a1 a.83.1.1 (A:2-102) Cre 18.7 14 0.001 28.5 0.5 23 303-329 73-95 (101)
10 d1js8a2 b.112.1.1 (A:2792-2892 17.9 47 0.0034 25.5 3.4 43 255-310 2-44 (101)
No 1
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=42.24 E-value=9.6 Score=25.92 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=30.3
Q ss_pred HhhhhcccChhHHHHHHHHHhhhChhhHHHhCCCCCCCceeEEEEecC
Q 017624 194 YIRSRFTINPDKVYRMAMRKLNTSAGILEVMGAPLSGTSLRAYVMSGG 241 (368)
Q Consensus 194 YlR~R~tInPdaVYr~AMRkLnts~gVlEvMGAPLtg~~~RAYv~SGG 241 (368)
-|...++|++..|+|..-. |+..|.|+..+. +.|+..||
T Consensus 27 ~La~~l~VS~~TI~rdi~~--------L~~~G~~I~~~~-gGY~L~~G 65 (65)
T d1j5ya1 27 QLAEELSVSRQVIVQDIAY--------LRSLGYNIVATP-RGYVLAGG 65 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHH--------HHHHTCCCEEET-TEEECCTT
T ss_pred HHHHHHCCCHHHHHHHHHH--------HHHCCCeEEEeC-CCEEeCCC
Confidence 4556789999999988743 677899997755 68888877
No 2
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus subtilis [TaxId: 1423]}
Probab=41.93 E-value=9.5 Score=28.04 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=40.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHhhhhcccChhHHHHHHHHHhhh
Q 017624 143 LLLFGAGGVVVCMLLWRIMFGIANTFVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTINPDKVYRMAMRKLNT 216 (368)
Q Consensus 143 l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~mak~GFlALsta~VafaglYlR~R~tInPdaVYr~AMRkLnt 216 (368)
+.+.+=+|=.+-++.|..--.... ..+--.. ++-=.|=|-+..+.+...++||++++....|.|++|
T Consensus 32 ~~l~~E~GElae~~~~~~~~~~~~----~~~~~~~---l~~ElaDVl~yl~~LA~~l~iDL~~a~~~k~~K~~t 98 (98)
T d2gtaa1 32 ARLTEELGELAREVNHRYGEKPKK----ATEDDKS---MEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKFNT 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCC----SSCSCSH---HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHcCccCCC----CcccHHH---HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHhhcC
Confidence 445566666777888852111000 0111011 222244555666777789999999999999999986
No 3
>d2oi8a2 a.121.1.1 (A:87-216) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=38.81 E-value=16 Score=27.35 Aligned_cols=62 Identities=8% Similarity=0.170 Sum_probs=41.4
Q ss_pred hhhHHHHhhcchhhhhhhhhHHHHHHHHHHHHhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHhhhhcccChhHHHHHH
Q 017624 131 GLQIDAFFKGNYLLLFGAGGVVVCMLLWRIMFGIANTFVGISEGMAKYGFLALSTAIVAFAGLYIRSRFTINPDKVYRMA 210 (368)
Q Consensus 131 ~lqleaFwkrn~l~~vga~~~~~c~~lWrimf~iss~Fv~LSe~mak~GFlALsta~VafaglYlR~R~tInPdaVYr~A 210 (368)
..++++.+.+-..--+-...+.+++.+|-.+.|+.|+-+. |-| ..-+.||+++|+..
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~~~~a~~~Ws~lHGlvsLei~--------G~l---------------~~~~~d~~~lf~~~ 123 (130)
T d2oi8a2 67 DAHLDTHRQWAGDRPAPSSALHRALSFWSRLHGVLSLELA--------GQF---------------TGMGFDSALLFEAE 123 (130)
T ss_dssp HHHHHHSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHT--------TTT---------------TTSCSCHHHHHHHH
T ss_pred hhHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHh--------CCC---------------CCCCCCHHHHHHHH
Confidence 3456665554333334457788999999999999886441 111 13467999999999
Q ss_pred HHHhh
Q 017624 211 MRKLN 215 (368)
Q Consensus 211 MRkLn 215 (368)
|+.|-
T Consensus 124 l~~L~ 128 (130)
T d2oi8a2 124 LKDLL 128 (130)
T ss_dssp HHHHS
T ss_pred HHHHc
Confidence 98763
No 4
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}
Probab=29.28 E-value=14 Score=30.07 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.5
Q ss_pred HhhhhcccChhHHHHHHHHHhhhC
Q 017624 194 YIRSRFTINPDKVYRMAMRKLNTS 217 (368)
Q Consensus 194 YlR~R~tInPdaVYr~AMRkLnts 217 (368)
=||.+|+||+|.+...|++.|.+.
T Consensus 136 ~L~~~Fgi~~~~Iv~aAl~~L~~~ 159 (186)
T d2ieaa3 136 NLRHHFEVDASYVVVAALGELAKR 159 (186)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999998765
No 5
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}
Probab=28.90 E-value=7 Score=30.52 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.8
Q ss_pred hcch-hhhhhhhhHHHHHHHHHHHHhh
Q 017624 139 KGNY-LLLFGAGGVVVCMLLWRIMFGI 164 (368)
Q Consensus 139 krn~-l~~vga~~~~~c~~lWrimf~i 164 (368)
|+|+ .+|||+|.+|++.+++=.--|.
T Consensus 2 ~~~~DvvIIGaGi~Gls~A~~La~~G~ 28 (276)
T d1ryia1 2 KRHYEAVVIGGGIIGSAIAYYLAKENK 28 (276)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCC
Confidence 3444 8999999999999987655443
No 6
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4, KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.76 E-value=25 Score=32.01 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=23.0
Q ss_pred hHHHHHhhhchhhcccccchhhHHHHHHHHHHHHHhHHHHHH
Q 017624 323 DPVVKAMAATKEFDDLDRIEDEEDAERELQEAERKHREEIKK 364 (368)
Q Consensus 323 dP~vkAmaa~~ef~~~d~~e~e~d~e~e~~e~e~~~~~e~~~ 364 (368)
.|+.+||.. .+.++.+++.++|||++|+.|.+.|+
T Consensus 317 r~d~~ale~-------Gd~d~A~~eK~~LEe~QR~~Rk~re~ 351 (433)
T d1zhxa1 317 YDVAGAIKL-------GDFNLIAKTKTELEETQRELRKEEEA 351 (433)
T ss_dssp HHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688788865 34555666667777777776665554
No 7
>d3ebya1 d.17.4.4 (A:6-162) Putative hydroxylase subunit Saro3860 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=24.43 E-value=5.7 Score=29.32 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEEecCcccccccccccccCceE--EEEee
Q 017624 235 AYVMSGGGITMKNFKPRFRSKRCF--LIFPI 263 (368)
Q Consensus 235 AYv~SGGgl~~kk~~PrlrsKr~~--liFpl 263 (368)
-|+-++|+|++++.+.-+.+.++. ++|||
T Consensus 127 ~~~r~~g~Wri~~R~v~~D~~~~~~~~~~p~ 157 (157)
T d3ebya1 127 RFDLSGGTVRLKSRTCIYDTLRIATLLATPI 157 (157)
T ss_dssp EEECCTTCCEEEEEEEEECCSCCCCSSCCCC
T ss_pred EEEEECCEEEEEEEEEEEeCcccCcceeccC
Confidence 456778888888877777666654 66664
No 8
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.77 E-value=24 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=16.5
Q ss_pred cccccchhh-HHHHHHHHHHHHHhHHHHHHhh
Q 017624 336 DDLDRIEDE-EDAERELQEAERKHREEIKKLE 366 (368)
Q Consensus 336 ~~~d~~e~e-~d~e~e~~e~e~~~~~e~~~~~ 366 (368)
++..+.|+| +.++.||+++-++..+..++++
T Consensus 91 ~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~ 122 (129)
T d1ykhb1 91 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 3555666666666655555554
No 9
>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken (Gallus gallus), brain-type [TaxId: 9031]}
Probab=18.74 E-value=14 Score=28.52 Aligned_cols=23 Identities=48% Similarity=0.787 Sum_probs=19.8
Q ss_pred EEecCcchhhccCcchhhcchHHHHHh
Q 017624 303 FLIGDEEEYKVGDGLIAELRDPVVKAM 329 (368)
Q Consensus 303 fL~GdeeeY~~gggli~eLRdP~vkAm 329 (368)
..+||+|.|.+ ..+|=|||++..
T Consensus 73 ~~AgD~esY~v----F~~lFDpvI~dy 95 (101)
T d1qh4a1 73 CVAGDEESYEV----FKELFDPVIEDR 95 (101)
T ss_dssp CCCSSTTHHHH----THHHHHHHHHHH
T ss_pred eecCChHHHHH----HHHHHHHHHHHH
Confidence 57899999998 899999998753
No 10
>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]}
Probab=17.89 E-value=47 Score=25.49 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=33.7
Q ss_pred CceEEEEeecCCcccceeEEeeeeccccceeeEEeeeccCCCCCCceEEEecCcch
Q 017624 255 KRCFLIFPIRGSERKGLVSVEVKKKKGQHDTKLLAIDIPMKSGPDQRLFLIGDEEE 310 (368)
Q Consensus 255 Kr~~liFpl~GserrGLVSvEakKk~Gqy~~klLAVDIP~~~G~dqRlfL~Gdeee 310 (368)
-|+|--|-|+|=..++.|.+.+.+..+.-. ....+++-|++.|
T Consensus 2 DRVFAgFlL~Gig~SA~V~~~ic~~~~~c~-------------~AG~F~vLGG~~E 44 (101)
T d1js8a2 2 DRVFAGFLLRTIGQSADVNFDVCTKDGECT-------------FGGTFCILGGEHE 44 (101)
T ss_dssp CEEEEEECCBCCSSCEEEEEEEEETTSCEE-------------EEEEEEECCCTTC
T ss_pred CcEEEEeeeccCCceeEEEEEEECCCCCcc-------------eeeEEEEecCCcc
Confidence 389999999999999999999998775311 1346777788766
Done!