BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017625
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Closed Form At 1.15 A
Resolution
pdb|2OLO|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For
Nikkomycin Biosynthesis: Open Form At 1.9a Resolution
Length = 397
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 100 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 157
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 167 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 223
Query: 158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 195
E + V WF + P +N GFG
Sbjct: 224 YEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFG 261
>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase
Essential For Nikkomycin Biosynthesis: Open Form At
1.55a Resolution
Length = 397
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 100 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 157
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 167 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 223
Query: 158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 195
E + V WF + P +N GFG
Sbjct: 224 YEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFFGFG 261
>pdb|2Q6U|A Chain A, Semet-Substituted Form Of Nikd
Length = 384
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 100 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST--LQELIKNSILCNR 157
G G VT+ + D + ++ + TY AG VVLA G T L E + + +
Sbjct: 166 GATLRAGETVTELVPDADGVSVT---TDRGTYRAGKVVLACGPYTNDLLEPLGARLAYSV 222
Query: 158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG 195
E + V WF + P +N GFG
Sbjct: 223 YEXAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFG 260
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 195 GDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS 254
GD+ AW F + + +E++ + +Q EL P ++A AVSY + +
Sbjct: 97 GDAEAWQFLGITQAENENEQAAIVALQRCL----ELQPNNLKALMALAVSYTNTSHQQ-D 151
Query: 255 TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNL 291
+ + I++ PK YKY+++ P L
Sbjct: 152 ACEALKNWIKQNPK---------YKYLVKNKKGSPGL 179
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 146 QELIKNSILCNREEFLKVLN-LASID----VVSVKLWFDKKVTVPNVSNACSGFGDSLAW 200
Q+ I+NS+ CN+++ LK+ + L ID ++ WF +K++ + A
Sbjct: 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERL 216
Query: 201 TFFDLNKIYDEHK---DDSATVIQADFYHANELMPLKDDQ 237
D K+ D D + +I+ H LMPL D +
Sbjct: 217 NRIDAKKVKDYINLLIDYMSKLIKDGRCHELSLMPLPDRE 256
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 289 PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIP 335
P + ++TT G+ QE +T N +VDY+ G FS + P
Sbjct: 376 PTFPASSPYVTTVGGTSFQEPFLIT-----NEIVDYISGGGFSNVFP 417
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 289 PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIP 335
P + ++TT G+ QE +T N +VDY+ G FS + P
Sbjct: 357 PTFPASSPYVTTVGGTSFQEPFLIT-----NEIVDYISGGGFSNVFP 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,970,479
Number of Sequences: 62578
Number of extensions: 452198
Number of successful extensions: 1396
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 10
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)