Query 017625
Match_columns 368
No_of_seqs 132 out of 1603
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 6.5E-38 1.4E-42 308.3 33.2 313 11-326 221-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 1.6E-35 3.4E-40 289.1 31.3 309 11-322 145-474 (474)
3 PLN02612 phytoene desaturase 100.0 6.3E-35 1.4E-39 290.1 33.1 308 14-327 237-550 (567)
4 TIGR03467 HpnE squalene-associ 100.0 2.4E-31 5.2E-36 257.1 31.6 293 15-323 126-419 (419)
5 TIGR02731 phytoene_desat phyto 100.0 2.1E-31 4.6E-36 260.1 31.1 302 14-322 142-453 (453)
6 PRK07233 hypothetical protein; 100.0 2E-28 4.4E-33 237.8 30.5 302 14-326 126-432 (434)
7 PRK07208 hypothetical protein; 99.9 4.5E-24 9.9E-29 210.0 26.9 310 18-339 131-472 (479)
8 COG3349 Uncharacterized conser 99.9 4.9E-25 1.1E-29 208.1 18.1 334 10-347 139-484 (485)
9 TIGR00562 proto_IX_ox protopor 99.9 1.4E-23 3.1E-28 205.6 26.2 291 18-326 135-461 (462)
10 PRK12416 protoporphyrinogen ox 99.9 2.8E-23 6.1E-28 203.4 25.9 290 17-325 143-461 (463)
11 PLN02576 protoporphyrinogen ox 99.9 2.4E-23 5.2E-28 205.7 24.6 296 17-327 143-489 (496)
12 PRK11883 protoporphyrinogen ox 99.9 5.2E-23 1.1E-27 201.0 25.5 289 15-323 136-450 (451)
13 TIGR02733 desat_CrtD C-3',4' d 99.9 1.3E-22 2.8E-27 200.2 26.8 295 16-324 166-491 (492)
14 COG1232 HemY Protoporphyrinoge 99.9 2E-22 4.4E-27 191.2 21.6 293 13-323 128-444 (444)
15 PLN02268 probable polyamine ox 99.9 1.3E-21 2.8E-26 190.3 21.7 281 16-325 130-434 (435)
16 PLN02529 lysine-specific histo 99.9 1.1E-20 2.3E-25 190.3 28.5 290 16-327 285-600 (738)
17 TIGR02734 crtI_fam phytoene de 99.9 5.8E-21 1.3E-25 188.9 26.0 295 16-329 158-496 (502)
18 PLN03000 amine oxidase 99.9 1.7E-20 3.7E-25 189.6 25.0 260 79-358 375-656 (881)
19 PLN02676 polyamine oxidase 99.9 5.5E-21 1.2E-25 187.1 20.0 263 48-327 189-475 (487)
20 TIGR02730 carot_isom carotene 99.9 6.7E-20 1.5E-24 180.7 26.4 295 17-326 167-493 (493)
21 PLN02328 lysine-specific histo 99.9 9.3E-20 2E-24 184.3 26.4 259 78-358 430-709 (808)
22 PLN02568 polyamine oxidase 99.9 3.6E-20 7.9E-25 182.7 22.0 296 19-326 160-536 (539)
23 PF01593 Amino_oxidase: Flavin 99.9 5.4E-21 1.2E-25 184.8 15.6 297 15-322 138-450 (450)
24 PLN02976 amine oxidase 99.8 3.2E-19 7E-24 185.2 22.1 259 49-328 904-1189(1713)
25 COG1231 Monoamine oxidase [Ami 99.8 1.8E-17 3.9E-22 154.2 20.1 232 81-326 205-448 (450)
26 KOG4254 Phytoene desaturase [C 99.7 4.3E-16 9.4E-21 143.5 23.1 239 76-327 255-548 (561)
27 KOG0029 Amine oxidase [Seconda 99.7 2.5E-15 5.5E-20 146.2 19.5 229 81-327 215-461 (501)
28 COG1233 Phytoene dehydrogenase 99.6 1.1E-14 2.5E-19 142.9 19.3 288 15-324 162-482 (487)
29 KOG1276 Protoporphyrinogen oxi 99.6 1.2E-14 2.6E-19 133.5 16.4 293 15-322 151-490 (491)
30 COG3380 Predicted NAD/FAD-depe 99.6 1.8E-15 3.8E-20 131.1 7.9 220 82-325 105-331 (331)
31 KOG0685 Flavin-containing amin 99.5 1.6E-13 3.5E-18 128.1 16.2 237 81-326 219-492 (498)
32 PRK13977 myosin-cross-reactive 99.4 5.1E-11 1.1E-15 116.4 24.1 303 14-326 157-525 (576)
33 COG2907 Predicted NAD/FAD-bind 99.4 1.7E-11 3.6E-16 110.2 15.9 150 11-171 142-297 (447)
34 PTZ00363 rab-GDP dissociation 99.0 8.6E-09 1.9E-13 99.6 13.7 123 17-142 163-288 (443)
35 PF06100 Strep_67kDa_ant: Stre 98.8 1.5E-06 3.3E-11 83.1 21.5 294 15-318 139-499 (500)
36 TIGR02352 thiamin_ThiO glycine 98.6 1.3E-05 2.8E-10 75.1 20.9 195 86-323 137-335 (337)
37 PRK00711 D-amino acid dehydrog 98.4 4.5E-05 9.7E-10 73.8 21.0 201 86-324 201-402 (416)
38 PF01266 DAO: FAD dependent ox 98.4 7.9E-06 1.7E-10 76.9 15.1 63 86-151 147-209 (358)
39 PF00996 GDI: GDP dissociation 98.3 1.4E-05 2.9E-10 76.9 13.8 120 16-139 162-284 (438)
40 PF07156 Prenylcys_lyase: Pren 98.3 1.7E-05 3.6E-10 74.8 14.2 119 15-146 65-189 (368)
41 TIGR01373 soxB sarcosine oxida 98.1 0.00071 1.5E-08 65.3 21.6 200 87-324 184-385 (407)
42 TIGR03329 Phn_aa_oxid putative 98.0 0.00025 5.4E-09 69.6 17.2 56 86-145 183-238 (460)
43 TIGR03197 MnmC_Cterm tRNA U-34 98.0 0.00041 8.9E-09 66.4 17.7 56 86-145 135-191 (381)
44 TIGR01377 soxA_mon sarcosine o 98.0 0.0025 5.3E-08 60.8 22.3 55 87-144 146-200 (380)
45 PRK12409 D-amino acid dehydrog 97.9 0.0023 4.9E-08 61.8 20.0 58 86-145 197-259 (410)
46 PRK11259 solA N-methyltryptoph 97.7 0.0052 1.1E-07 58.5 19.8 56 87-145 150-205 (376)
47 TIGR02032 GG-red-SF geranylger 97.6 0.0089 1.9E-07 54.5 18.5 55 87-144 92-148 (295)
48 KOG2820 FAD-dependent oxidored 97.5 0.0074 1.6E-07 55.2 16.0 63 88-151 155-218 (399)
49 PRK10157 putative oxidoreducta 97.4 0.0078 1.7E-07 58.6 16.3 55 88-144 110-164 (428)
50 COG0665 DadA Glycine/D-amino a 97.4 0.025 5.5E-07 53.9 19.4 206 87-326 157-369 (387)
51 PRK01747 mnmC bifunctional tRN 97.3 0.009 1.9E-07 61.5 16.7 64 78-145 398-464 (662)
52 PRK10015 oxidoreductase; Provi 97.3 0.054 1.2E-06 52.7 20.8 55 88-144 110-164 (429)
53 PRK11101 glpA sn-glycerol-3-ph 97.3 0.095 2.1E-06 52.7 22.7 57 86-144 149-211 (546)
54 PLN02464 glycerol-3-phosphate 97.2 0.051 1.1E-06 55.5 20.5 58 86-144 232-296 (627)
55 TIGR03377 glycerol3P_GlpA glyc 97.2 0.017 3.6E-07 57.7 16.7 58 86-145 128-191 (516)
56 COG0644 FixC Dehydrogenases (f 97.2 0.069 1.5E-06 51.4 19.8 57 88-145 97-153 (396)
57 PF03486 HI0933_like: HI0933-l 97.1 0.0015 3.4E-08 62.7 8.1 66 76-143 99-165 (409)
58 TIGR03378 glycerol3P_GlpB glyc 97.0 0.0023 4.9E-08 61.3 8.0 64 86-151 263-329 (419)
59 KOG1439 RAB proteins geranylge 96.8 0.0036 7.8E-08 58.3 6.9 129 10-141 154-286 (440)
60 COG4716 Myosin-crossreactive a 96.8 0.0054 1.2E-07 56.8 7.6 107 5-119 151-260 (587)
61 COG2509 Uncharacterized FAD-de 96.7 0.0048 1E-07 58.6 7.0 56 87-144 174-230 (486)
62 PLN02697 lycopene epsilon cycl 96.7 0.64 1.4E-05 46.4 22.2 55 87-144 193-248 (529)
63 COG0578 GlpA Glycerol-3-phosph 96.7 0.055 1.2E-06 53.3 14.3 57 87-146 165-227 (532)
64 PRK13369 glycerol-3-phosphate 96.7 0.43 9.3E-06 47.5 21.1 57 86-145 155-216 (502)
65 PRK12266 glpD glycerol-3-phosp 96.6 0.48 1E-05 47.2 21.4 57 86-145 155-217 (508)
66 COG2081 Predicted flavoprotein 96.6 0.008 1.7E-07 56.3 7.7 63 76-142 101-165 (408)
67 TIGR02485 CobZ_N-term precorri 96.5 0.011 2.4E-07 57.6 8.5 64 79-143 117-182 (432)
68 PRK06847 hypothetical protein; 96.5 0.48 1E-05 45.0 19.5 55 87-144 108-163 (375)
69 PRK06185 hypothetical protein; 96.5 0.25 5.4E-06 47.6 17.6 61 87-149 109-175 (407)
70 TIGR01790 carotene-cycl lycope 96.5 0.88 1.9E-05 43.4 21.3 56 86-144 85-141 (388)
71 PTZ00383 malate:quinone oxidor 96.4 0.011 2.4E-07 58.4 7.7 59 86-146 211-275 (497)
72 TIGR01988 Ubi-OHases Ubiquinon 96.4 0.21 4.5E-06 47.5 16.4 55 87-144 107-163 (385)
73 PRK08773 2-octaprenyl-3-methyl 96.4 0.31 6.7E-06 46.7 17.6 55 87-144 114-169 (392)
74 TIGR01984 UbiH 2-polyprenyl-6- 96.3 0.28 6E-06 46.8 17.1 55 87-144 106-162 (382)
75 KOG2844 Dimethylglycine dehydr 96.3 0.14 3.1E-06 51.1 14.8 57 86-144 187-243 (856)
76 TIGR03862 flavo_PP4765 unchara 96.3 0.054 1.2E-06 51.5 11.4 64 76-144 76-141 (376)
77 COG0579 Predicted dehydrogenas 96.2 0.014 3.1E-07 56.0 7.4 58 87-146 154-213 (429)
78 TIGR00031 UDP-GALP_mutase UDP- 96.1 0.0043 9.3E-08 59.0 3.3 116 20-147 129-250 (377)
79 PRK08274 tricarballylate dehyd 96.1 0.02 4.4E-07 56.3 8.2 57 85-143 130-191 (466)
80 PRK07045 putative monooxygenas 96.0 1.2 2.6E-05 42.5 19.8 60 87-147 107-169 (388)
81 PLN02463 lycopene beta cyclase 96.0 1.8 3.8E-05 42.4 21.3 54 87-144 115-169 (447)
82 PF00890 FAD_binding_2: FAD bi 95.9 0.024 5.3E-07 54.8 7.3 59 85-145 140-204 (417)
83 COG0654 UbiH 2-polyprenyl-6-me 95.9 0.62 1.3E-05 44.6 16.9 62 86-150 104-169 (387)
84 KOG4405 GDP dissociation inhib 95.8 0.063 1.4E-06 50.4 9.2 124 11-139 214-340 (547)
85 KOG2852 Possible oxidoreductas 95.8 0.29 6.2E-06 44.1 12.8 62 86-151 147-214 (380)
86 PRK11728 hydroxyglutarate oxid 95.8 0.03 6.5E-07 53.8 7.5 56 86-144 149-204 (393)
87 PF13738 Pyr_redox_3: Pyridine 95.7 0.024 5.2E-07 48.8 5.9 54 87-143 83-137 (203)
88 PRK12845 3-ketosteroid-delta-1 95.7 0.036 7.8E-07 55.8 7.8 60 81-144 214-278 (564)
89 PRK07121 hypothetical protein; 95.6 0.038 8.3E-07 54.8 7.6 59 85-144 176-239 (492)
90 PRK06134 putative FAD-binding 95.5 0.039 8.5E-07 55.9 7.5 57 86-144 217-278 (581)
91 TIGR00275 flavoprotein, HI0933 95.5 0.06 1.3E-06 51.9 8.3 63 79-144 98-160 (400)
92 TIGR01816 sdhA_forward succina 95.4 0.062 1.3E-06 54.2 8.3 58 85-144 118-181 (565)
93 PRK12835 3-ketosteroid-delta-1 95.3 0.049 1.1E-06 55.2 7.4 58 86-144 213-275 (584)
94 PF01494 FAD_binding_3: FAD bi 95.3 0.92 2E-05 42.2 15.6 62 87-150 112-179 (356)
95 PF06039 Mqo: Malate:quinone o 95.2 0.11 2.5E-06 49.9 9.0 62 87-151 182-250 (488)
96 PRK12844 3-ketosteroid-delta-1 95.2 0.064 1.4E-06 54.1 7.7 57 86-144 208-269 (557)
97 TIGR01813 flavo_cyto_c flavocy 95.2 0.059 1.3E-06 52.6 7.3 58 86-144 130-192 (439)
98 TIGR01320 mal_quin_oxido malat 95.2 0.072 1.6E-06 52.7 7.8 58 86-145 178-241 (483)
99 PRK12843 putative FAD-binding 95.2 0.066 1.4E-06 54.2 7.7 57 86-144 221-282 (578)
100 PRK07494 2-octaprenyl-6-methox 95.1 1.1 2.4E-05 42.8 15.7 55 87-144 112-167 (388)
101 PRK07588 hypothetical protein; 95.1 2.1 4.5E-05 40.9 17.6 54 87-144 104-158 (391)
102 PRK04176 ribulose-1,5-biphosph 95.0 0.097 2.1E-06 47.2 7.6 58 86-144 104-173 (257)
103 PRK05329 anaerobic glycerol-3- 94.9 0.1 2.3E-06 50.4 7.9 55 87-143 260-317 (422)
104 PRK05675 sdhA succinate dehydr 94.9 0.11 2.3E-06 52.6 8.3 59 85-144 125-189 (570)
105 PRK09078 sdhA succinate dehydr 94.8 0.11 2.4E-06 52.8 8.4 59 85-144 148-212 (598)
106 PRK05732 2-octaprenyl-6-methox 94.8 2.5 5.4E-05 40.4 17.3 54 88-144 114-169 (395)
107 PRK06175 L-aspartate oxidase; 94.7 0.12 2.5E-06 50.4 7.9 56 85-142 127-187 (433)
108 PRK06481 fumarate reductase fl 94.7 0.1 2.2E-06 52.0 7.6 55 86-142 190-249 (506)
109 PF05834 Lycopene_cycl: Lycope 94.7 4.2 9.1E-05 38.8 21.9 55 86-144 87-142 (374)
110 PRK05257 malate:quinone oxidor 94.7 0.12 2.5E-06 51.3 7.8 58 87-146 184-248 (494)
111 PRK07843 3-ketosteroid-delta-1 94.7 0.11 2.4E-06 52.3 7.8 58 85-144 207-269 (557)
112 PRK08958 sdhA succinate dehydr 94.6 0.14 3E-06 52.0 8.3 59 85-144 142-206 (588)
113 PRK08244 hypothetical protein; 94.5 5 0.00011 39.8 19.1 59 88-149 102-165 (493)
114 PRK08850 2-octaprenyl-6-methox 94.4 3.1 6.8E-05 40.0 17.0 59 88-149 113-174 (405)
115 PRK08401 L-aspartate oxidase; 94.2 0.16 3.4E-06 50.0 7.7 56 86-144 120-175 (466)
116 TIGR01812 sdhA_frdA_Gneg succi 94.2 0.2 4.2E-06 50.7 8.5 58 85-144 128-191 (566)
117 PRK12842 putative succinate de 94.2 0.14 3.1E-06 51.8 7.5 57 86-144 214-275 (574)
118 COG1252 Ndh NADH dehydrogenase 94.1 0.12 2.5E-06 49.5 6.1 55 83-144 206-262 (405)
119 PF00732 GMC_oxred_N: GMC oxid 94.0 0.16 3.5E-06 46.6 6.9 63 90-152 197-266 (296)
120 PRK12839 hypothetical protein; 94.0 0.17 3.7E-06 51.2 7.5 58 86-144 214-276 (572)
121 TIGR01811 sdhA_Bsu succinate d 94.0 0.22 4.9E-06 50.6 8.4 58 85-143 128-195 (603)
122 PRK05945 sdhA succinate dehydr 94.0 0.24 5.1E-06 50.2 8.5 58 85-144 134-197 (575)
123 PRK06183 mhpA 3-(3-hydroxyphen 93.9 7.7 0.00017 38.9 20.3 59 88-149 115-180 (538)
124 PRK07573 sdhA succinate dehydr 93.9 0.2 4.3E-06 51.3 7.9 53 90-144 174-232 (640)
125 PTZ00139 Succinate dehydrogena 93.9 0.25 5.4E-06 50.4 8.6 57 86-143 166-228 (617)
126 PRK06452 sdhA succinate dehydr 93.9 0.23 4.9E-06 50.2 8.1 57 86-144 136-198 (566)
127 PRK06116 glutathione reductase 93.6 0.27 5.8E-06 48.2 8.0 57 85-143 207-264 (450)
128 PRK09564 coenzyme A disulfide 93.6 0.24 5.3E-06 48.3 7.7 63 85-150 190-252 (444)
129 PRK12837 3-ketosteroid-delta-1 93.6 0.24 5.1E-06 49.5 7.6 56 86-143 173-234 (513)
130 PRK07057 sdhA succinate dehydr 93.5 0.33 7.1E-06 49.3 8.6 59 85-144 147-211 (591)
131 PLN00128 Succinate dehydrogena 93.4 0.32 6.9E-06 49.8 8.3 59 85-144 186-250 (635)
132 TIGR00292 thiazole biosynthesi 93.4 0.4 8.6E-06 43.1 8.0 57 87-143 101-169 (254)
133 PF01134 GIDA: Glucose inhibit 93.4 0.32 6.9E-06 46.4 7.6 53 87-142 96-150 (392)
134 PRK08626 fumarate reductase fl 93.3 0.34 7.3E-06 49.9 8.3 58 85-144 157-220 (657)
135 PRK07512 L-aspartate oxidase; 93.3 0.2 4.2E-06 50.0 6.5 58 85-144 135-197 (513)
136 TIGR00551 nadB L-aspartate oxi 93.2 0.23 5.1E-06 49.2 6.9 57 86-144 128-189 (488)
137 TIGR03364 HpnW_proposed FAD de 93.2 0.21 4.5E-06 47.3 6.3 53 86-145 145-198 (365)
138 PRK08275 putative oxidoreducta 93.2 0.34 7.3E-06 48.9 8.0 58 86-144 137-200 (554)
139 PRK13339 malate:quinone oxidor 93.1 0.28 6.1E-06 48.5 7.2 58 87-146 185-249 (497)
140 PRK07333 2-octaprenyl-6-methox 93.1 0.31 6.8E-06 46.8 7.4 55 87-144 112-167 (403)
141 PRK06263 sdhA succinate dehydr 93.0 0.31 6.8E-06 49.0 7.4 58 86-144 134-197 (543)
142 PRK12834 putative FAD-binding 92.9 0.36 7.7E-06 48.6 7.7 57 86-144 148-227 (549)
143 PRK04965 NADH:flavorubredoxin 92.9 0.42 9E-06 45.6 7.9 56 86-144 183-239 (377)
144 KOG1336 Monodehydroascorbate/f 92.8 0.21 4.7E-06 47.9 5.6 64 86-150 255-319 (478)
145 PRK08205 sdhA succinate dehydr 92.8 0.41 9E-06 48.5 8.1 60 85-144 139-206 (583)
146 PF00070 Pyr_redox: Pyridine n 92.7 0.34 7.4E-06 34.8 5.5 42 83-127 37-78 (80)
147 PRK06416 dihydrolipoamide dehy 92.6 0.51 1.1E-05 46.4 8.3 56 86-144 213-272 (462)
148 PRK05249 soluble pyridine nucl 92.4 0.47 1E-05 46.6 7.8 57 85-144 215-272 (461)
149 PRK07395 L-aspartate oxidase; 92.4 0.37 8E-06 48.5 7.0 59 85-143 133-196 (553)
150 PRK07251 pyridine nucleotide-d 92.3 0.61 1.3E-05 45.5 8.4 56 86-144 198-253 (438)
151 PLN02507 glutathione reductase 92.2 0.58 1.3E-05 46.5 8.1 57 84-143 242-299 (499)
152 TIGR01350 lipoamide_DH dihydro 92.2 0.61 1.3E-05 45.8 8.2 56 86-144 211-269 (461)
153 PRK07804 L-aspartate oxidase; 92.1 0.44 9.5E-06 47.9 7.2 58 86-144 144-210 (541)
154 PRK08010 pyridine nucleotide-d 92.1 0.55 1.2E-05 45.8 7.7 56 86-144 199-254 (441)
155 PRK14694 putative mercuric red 91.9 0.59 1.3E-05 46.1 7.8 56 86-144 218-273 (468)
156 PRK08071 L-aspartate oxidase; 91.9 0.36 7.8E-06 48.1 6.2 56 86-144 130-190 (510)
157 TIGR01423 trypano_reduc trypan 91.8 0.69 1.5E-05 45.8 8.1 57 85-143 230-287 (486)
158 TIGR01424 gluta_reduc_2 glutat 91.8 0.69 1.5E-05 45.2 8.1 56 85-143 206-262 (446)
159 PRK07190 hypothetical protein; 91.7 0.67 1.4E-05 45.9 7.8 56 88-145 111-166 (487)
160 PRK06126 hypothetical protein; 91.5 17 0.00036 36.6 20.8 56 88-145 128-189 (545)
161 PRK09754 phenylpropionate diox 91.5 0.77 1.7E-05 44.1 7.9 58 87-148 187-245 (396)
162 PRK06854 adenylylsulfate reduc 91.4 0.71 1.5E-05 47.1 7.9 57 86-144 132-195 (608)
163 PRK14727 putative mercuric red 91.3 0.7 1.5E-05 45.7 7.6 56 86-144 228-283 (479)
164 TIGR01421 gluta_reduc_1 glutat 91.2 0.96 2.1E-05 44.3 8.3 60 84-145 205-266 (450)
165 PRK07845 flavoprotein disulfid 91.2 0.74 1.6E-05 45.3 7.6 55 86-143 218-273 (466)
166 PRK06834 hypothetical protein; 91.1 0.73 1.6E-05 45.7 7.5 55 87-144 101-156 (488)
167 PF13454 NAD_binding_9: FAD-NA 91.0 0.83 1.8E-05 37.6 6.6 41 100-142 114-155 (156)
168 PRK05714 2-octaprenyl-3-methyl 90.9 0.74 1.6E-05 44.3 7.2 61 87-150 113-175 (405)
169 PRK14989 nitrite reductase sub 90.9 0.75 1.6E-05 48.7 7.6 62 87-149 188-250 (847)
170 PRK06069 sdhA succinate dehydr 90.8 1 2.2E-05 45.7 8.3 57 86-144 137-200 (577)
171 PRK07803 sdhA succinate dehydr 90.8 0.83 1.8E-05 46.8 7.7 55 86-142 138-211 (626)
172 COG5044 MRS6 RAB proteins gera 90.8 0.83 1.8E-05 42.7 6.8 121 11-139 155-279 (434)
173 TIGR01810 betA choline dehydro 90.5 0.54 1.2E-05 47.2 6.0 52 97-150 205-261 (532)
174 PRK13748 putative mercuric red 90.0 1 2.2E-05 45.4 7.6 56 86-144 310-365 (561)
175 PRK07818 dihydrolipoamide dehy 89.9 1.2 2.7E-05 43.7 7.9 55 86-143 213-272 (466)
176 TIGR01292 TRX_reduct thioredox 89.7 1.1 2.4E-05 40.7 7.1 54 86-143 57-111 (300)
177 PRK08163 salicylate hydroxylas 89.7 0.97 2.1E-05 43.2 6.9 56 87-145 110-167 (396)
178 PF04820 Trp_halogenase: Trypt 89.7 1.2 2.6E-05 43.7 7.5 57 87-145 155-212 (454)
179 PRK06184 hypothetical protein; 89.6 1 2.3E-05 44.7 7.2 55 88-145 111-169 (502)
180 PRK09897 hypothetical protein; 89.6 1.2 2.5E-05 44.6 7.4 52 88-142 109-164 (534)
181 TIGR03140 AhpF alkyl hydropero 89.5 1.1 2.4E-05 44.7 7.3 55 86-143 267-322 (515)
182 PRK06327 dihydrolipoamide dehy 89.3 1.5 3.2E-05 43.3 8.0 55 86-143 224-283 (475)
183 PRK06912 acoL dihydrolipoamide 89.0 1.6 3.6E-05 42.8 8.0 55 86-143 211-267 (458)
184 TIGR03385 CoA_CoA_reduc CoA-di 88.9 1.3 2.9E-05 42.9 7.2 60 86-149 179-238 (427)
185 PRK06370 mercuric reductase; V 88.9 1.7 3.6E-05 42.8 8.0 56 86-143 212-270 (463)
186 PTZ00052 thioredoxin reductase 88.9 1.6 3.5E-05 43.4 7.8 59 85-146 221-280 (499)
187 TIGR01176 fum_red_Fp fumarate 88.9 2.1 4.6E-05 43.4 8.8 58 85-144 131-195 (580)
188 PTZ00318 NADH dehydrogenase-li 88.8 1.1 2.4E-05 43.5 6.5 54 84-143 226-279 (424)
189 PTZ00306 NADH-dependent fumara 88.7 1.2 2.6E-05 49.0 7.4 58 87-144 545-620 (1167)
190 TIGR02462 pyranose_ox pyranose 88.7 1.1 2.4E-05 44.8 6.5 63 88-150 216-285 (544)
191 PTZ00058 glutathione reductase 88.6 1.7 3.7E-05 43.8 7.9 57 86-143 278-335 (561)
192 PRK08641 sdhA succinate dehydr 88.5 1.8 4E-05 43.9 8.2 59 85-144 132-200 (589)
193 PLN02815 L-aspartate oxidase 88.5 1.3 2.8E-05 45.0 7.0 58 86-143 155-221 (594)
194 TIGR02053 MerA mercuric reduct 88.2 2.2 4.8E-05 41.9 8.3 55 86-143 207-265 (463)
195 TIGR02374 nitri_red_nirB nitri 88.1 1.4 3E-05 46.5 7.2 55 87-144 183-238 (785)
196 PRK05976 dihydrolipoamide dehy 88.1 2.3 4.9E-05 41.9 8.4 58 86-144 221-281 (472)
197 PRK08020 ubiF 2-octaprenyl-3-m 88.0 1.6 3.5E-05 41.6 7.1 56 87-145 113-170 (391)
198 PRK09231 fumarate reductase fl 88.0 2.1 4.6E-05 43.4 8.2 57 86-144 133-196 (582)
199 PRK15317 alkyl hydroperoxide r 88.0 1.7 3.7E-05 43.4 7.5 55 86-143 266-321 (517)
200 PRK07608 ubiquinone biosynthes 87.8 1.7 3.7E-05 41.4 7.1 54 87-144 112-167 (388)
201 TIGR01438 TGR thioredoxin and 87.7 2.4 5.2E-05 42.0 8.2 56 85-143 219-278 (484)
202 PRK09077 L-aspartate oxidase; 87.1 2.7 5.8E-05 42.3 8.3 60 85-144 137-207 (536)
203 PRK08132 FAD-dependent oxidore 87.0 36 0.00078 34.2 21.7 61 88-150 127-192 (547)
204 PRK06115 dihydrolipoamide dehy 87.0 2.7 5.8E-05 41.4 8.1 57 85-143 214-275 (466)
205 TIGR00136 gidA glucose-inhibit 86.7 2.1 4.6E-05 43.3 7.2 56 87-144 97-154 (617)
206 PRK10262 thioredoxin reductase 86.7 1.6 3.4E-05 40.6 6.0 60 87-148 186-252 (321)
207 PRK05192 tRNA uridine 5-carbox 86.4 2.6 5.5E-05 42.8 7.6 53 88-143 102-156 (618)
208 PLN02172 flavin-containing mon 86.4 2.6 5.6E-05 41.5 7.6 56 86-144 111-173 (461)
209 PRK02106 choline dehydrogenase 86.2 1.1 2.5E-05 45.2 5.1 53 97-151 212-269 (560)
210 PLN02985 squalene monooxygenas 85.9 40 0.00087 33.7 18.6 60 87-149 148-214 (514)
211 TIGR02061 aprA adenosine phosp 85.9 3.3 7.1E-05 42.3 8.2 59 86-144 126-191 (614)
212 COG2509 Uncharacterized FAD-de 85.9 1.9 4.1E-05 41.5 5.9 40 284-326 445-484 (486)
213 PRK04965 NADH:flavorubredoxin 85.8 1.9 4E-05 41.1 6.1 45 94-143 66-110 (377)
214 PRK09126 hypothetical protein; 85.8 2.9 6.3E-05 39.9 7.5 55 87-144 111-167 (392)
215 KOG1335 Dihydrolipoamide dehyd 85.5 3.4 7.5E-05 39.0 7.3 61 82-144 248-314 (506)
216 PLN02661 Putative thiazole syn 85.0 3.5 7.7E-05 38.8 7.3 53 87-141 173-241 (357)
217 PLN02546 glutathione reductase 84.9 3.9 8.4E-05 41.3 8.1 59 84-144 291-350 (558)
218 PRK06617 2-octaprenyl-6-methox 84.8 3 6.6E-05 39.6 7.0 60 87-149 105-166 (374)
219 COG1249 Lpd Pyruvate/2-oxoglut 84.6 3.7 8E-05 40.2 7.5 58 83-143 211-271 (454)
220 PRK05335 tRNA (uracil-5-)-meth 84.5 4.2 9.1E-05 39.4 7.7 82 245-335 290-372 (436)
221 PF13434 K_oxygenase: L-lysine 84.5 1.7 3.7E-05 40.9 5.1 59 82-142 269-339 (341)
222 TIGR01316 gltA glutamate synth 84.5 3 6.4E-05 40.9 7.0 50 92-142 315-385 (449)
223 TIGR03169 Nterm_to_SelD pyridi 84.3 2.8 6.1E-05 39.6 6.6 51 86-143 191-242 (364)
224 KOG2853 Possible oxidoreductas 84.2 37 0.0008 31.8 16.0 80 233-324 401-482 (509)
225 PLN02927 antheraxanthin epoxid 84.0 56 0.0012 33.8 16.1 41 102-145 208-249 (668)
226 PF12831 FAD_oxidored: FAD dep 83.6 0.34 7.4E-06 47.1 0.0 58 92-151 96-157 (428)
227 PRK08013 oxidoreductase; Provi 83.6 3.4 7.3E-05 39.7 6.9 60 87-149 112-174 (400)
228 TIGR02023 BchP-ChlP geranylger 83.6 42 0.0009 32.0 21.6 54 87-144 93-155 (388)
229 PRK12810 gltD glutamate syntha 83.5 2.6 5.6E-05 41.6 6.1 47 93-141 336-397 (471)
230 PRK07846 mycothione reductase; 83.0 4.4 9.6E-05 39.7 7.5 57 86-146 207-264 (451)
231 TIGR02374 nitri_red_nirB nitri 83.0 1.8 3.8E-05 45.7 4.9 48 91-143 59-107 (785)
232 PRK11749 dihydropyrimidine deh 82.5 3.9 8.4E-05 40.1 6.9 32 92-125 317-348 (457)
233 KOG0404 Thioredoxin reductase 82.5 2.9 6.2E-05 36.5 5.1 64 79-146 63-126 (322)
234 PLN00093 geranylgeranyl diphos 82.2 53 0.0012 32.2 22.3 39 288-326 308-348 (450)
235 TIGR03452 mycothione_red mycot 82.0 5.6 0.00012 39.0 7.8 55 86-144 210-265 (452)
236 COG3075 GlpB Anaerobic glycero 82.0 3 6.5E-05 38.6 5.3 60 87-148 259-321 (421)
237 KOG2404 Fumarate reductase, fl 81.8 2.6 5.5E-05 38.9 4.8 55 88-144 141-206 (477)
238 PRK09754 phenylpropionate diox 81.3 3.3 7.2E-05 39.7 5.9 47 94-144 66-112 (396)
239 TIGR03140 AhpF alkyl hydropero 81.3 4.5 9.7E-05 40.4 6.9 51 92-144 393-450 (515)
240 TIGR01318 gltD_gamma_fam gluta 81.2 5.3 0.00012 39.3 7.3 32 94-126 328-359 (467)
241 TIGR02028 ChlP geranylgeranyl 81.1 53 0.0012 31.5 21.7 39 288-326 269-309 (398)
242 TIGR00136 gidA glucose-inhibit 81.0 5.5 0.00012 40.4 7.3 52 287-345 356-407 (617)
243 PRK07364 2-octaprenyl-6-methox 80.8 4.2 9.2E-05 39.1 6.4 57 86-145 121-182 (415)
244 PRK12831 putative oxidoreducta 80.6 4.8 0.0001 39.6 6.8 31 95-126 327-357 (464)
245 PRK11445 putative oxidoreducta 80.6 51 0.0011 30.9 20.4 54 88-145 101-158 (351)
246 PRK13512 coenzyme A disulfide 80.1 5.6 0.00012 38.8 7.0 53 85-144 188-241 (438)
247 KOG1346 Programmed cell death 80.0 2.4 5.3E-05 40.3 4.1 69 81-152 384-457 (659)
248 PRK12769 putative oxidoreducta 79.5 6 0.00013 40.8 7.4 38 286-326 615-652 (654)
249 PRK07236 hypothetical protein; 79.4 5.1 0.00011 38.2 6.4 52 88-144 102-154 (386)
250 TIGR03169 Nterm_to_SelD pyridi 79.2 3.2 7E-05 39.2 5.0 52 88-145 56-108 (364)
251 PRK09564 coenzyme A disulfide 79.1 3.8 8.3E-05 39.9 5.6 50 91-143 61-114 (444)
252 PRK06996 hypothetical protein; 79.1 6.3 0.00014 37.8 6.9 60 87-149 116-181 (398)
253 TIGR03219 salicylate_mono sali 78.9 4.8 0.0001 38.8 6.1 54 87-145 106-160 (414)
254 PF01134 GIDA: Glucose inhibit 78.5 4.7 0.0001 38.5 5.7 75 243-326 314-389 (392)
255 PRK08849 2-octaprenyl-3-methyl 78.5 6.5 0.00014 37.5 6.8 55 88-145 112-168 (384)
256 PRK08243 4-hydroxybenzoate 3-m 78.4 7.7 0.00017 37.1 7.3 60 87-149 104-169 (392)
257 PRK08294 phenol 2-monooxygenas 78.1 88 0.0019 32.2 22.6 61 88-149 143-216 (634)
258 COG0492 TrxB Thioredoxin reduc 77.8 8.1 0.00017 35.7 6.9 57 85-145 60-116 (305)
259 COG0446 HcaD Uncharacterized N 77.7 6.6 0.00014 37.4 6.7 57 86-144 178-237 (415)
260 PRK05868 hypothetical protein; 77.7 6 0.00013 37.6 6.3 48 99-149 117-166 (372)
261 PF07992 Pyr_redox_2: Pyridine 77.2 3.9 8.5E-05 34.7 4.5 51 91-143 63-121 (201)
262 PF01946 Thi4: Thi4 family; PD 77.2 9.8 0.00021 33.2 6.7 57 87-144 97-165 (230)
263 PRK06475 salicylate hydroxylas 76.9 7.7 0.00017 37.2 6.9 60 87-149 108-173 (400)
264 COG0029 NadB Aspartate oxidase 76.0 6.7 0.00015 38.3 6.0 61 80-142 127-194 (518)
265 TIGR01292 TRX_reduct thioredox 75.9 10 0.00023 34.3 7.2 53 88-143 178-237 (300)
266 KOG0405 Pyridine nucleotide-di 75.7 7.9 0.00017 36.2 6.0 60 83-143 227-286 (478)
267 PF00743 FMO-like: Flavin-bind 74.3 12 0.00025 37.6 7.5 59 86-145 84-151 (531)
268 COG0029 NadB Aspartate oxidase 74.1 8.7 0.00019 37.6 6.2 46 282-327 348-399 (518)
269 TIGR03385 CoA_CoA_reduc CoA-di 74.0 7.9 0.00017 37.5 6.2 46 95-143 53-102 (427)
270 KOG0042 Glycerol-3-phosphate d 73.8 32 0.0007 34.3 9.9 65 78-143 215-286 (680)
271 PRK06467 dihydrolipoamide dehy 72.9 14 0.00031 36.4 7.7 56 85-144 214-274 (471)
272 COG1635 THI4 Ribulose 1,5-bisp 72.7 14 0.0003 32.4 6.4 55 88-143 111-177 (262)
273 PRK14989 nitrite reductase sub 72.6 5.5 0.00012 42.4 4.9 47 92-143 65-112 (847)
274 PRK06753 hypothetical protein; 72.5 11 0.00023 35.7 6.6 57 88-149 100-158 (373)
275 COG1251 NirB NAD(P)H-nitrite r 72.5 4.2 9.2E-05 41.6 3.8 51 91-144 192-243 (793)
276 PRK13800 putative oxidoreducta 72.2 13 0.00027 40.1 7.6 56 86-143 139-204 (897)
277 TIGR03143 AhpF_homolog putativ 71.4 13 0.00027 37.6 7.1 53 87-143 61-113 (555)
278 PRK12809 putative oxidoreducta 71.0 13 0.00029 38.2 7.2 29 96-125 499-527 (639)
279 TIGR01989 COQ6 Ubiquinone bios 70.7 13 0.00028 36.2 6.8 58 87-145 118-184 (437)
280 PRK15317 alkyl hydroperoxide r 70.6 12 0.00027 37.3 6.7 52 91-144 391-449 (517)
281 PRK06292 dihydrolipoamide dehy 69.8 17 0.00037 35.6 7.5 55 86-143 210-267 (460)
282 PRK05192 tRNA uridine 5-carbox 69.5 19 0.00042 36.6 7.7 66 243-317 318-384 (618)
283 PRK12778 putative bifunctional 68.6 14 0.0003 38.9 6.8 32 94-126 616-647 (752)
284 PRK13512 coenzyme A disulfide 68.2 13 0.00027 36.3 6.2 46 96-144 68-117 (438)
285 TIGR01372 soxA sarcosine oxida 67.9 18 0.00039 39.3 7.7 58 88-148 353-415 (985)
286 TIGR00292 thiazole biosynthesi 67.2 6.8 0.00015 35.2 3.7 39 288-326 212-254 (254)
287 COG3486 IucD Lysine/ornithine 66.9 14 0.00029 35.4 5.6 59 83-143 268-339 (436)
288 PRK04176 ribulose-1,5-biphosph 66.7 6.6 0.00014 35.3 3.6 39 288-326 213-255 (257)
289 COG1635 THI4 Ribulose 1,5-bisp 66.5 5.6 0.00012 34.7 2.8 39 288-326 218-260 (262)
290 PRK13984 putative oxidoreducta 66.3 17 0.00036 37.1 6.8 28 97-126 473-500 (604)
291 TIGR00137 gid_trmFO tRNA:m(5)U 65.5 20 0.00043 34.9 6.7 83 244-335 288-371 (433)
292 PF13434 K_oxygenase: L-lysine 64.9 13 0.00027 35.1 5.2 53 90-142 99-157 (341)
293 COG2303 BetA Choline dehydroge 64.7 12 0.00026 37.7 5.3 53 96-150 213-272 (542)
294 COG0445 GidA Flavin-dependent 64.1 8.9 0.00019 38.1 4.0 53 90-144 104-158 (621)
295 PTZ00153 lipoamide dehydrogena 63.7 31 0.00067 35.7 8.1 58 86-145 353-428 (659)
296 COG2072 TrkA Predicted flavopr 62.9 27 0.00059 34.1 7.3 57 88-145 84-145 (443)
297 PRK10262 thioredoxin reductase 62.7 28 0.00062 32.1 7.2 54 87-144 64-117 (321)
298 PRK12770 putative glutamate sy 62.5 23 0.00051 33.2 6.6 50 90-142 214-284 (352)
299 COG1251 NirB NAD(P)H-nitrite r 62.2 11 0.00024 38.7 4.4 54 87-145 60-114 (793)
300 PRK12775 putative trifunctiona 62.0 9.3 0.0002 41.5 4.1 41 284-327 716-756 (1006)
301 PRK12775 putative trifunctiona 61.8 21 0.00046 38.9 6.8 49 94-143 617-685 (1006)
302 PRK12769 putative oxidoreducta 61.7 11 0.00025 38.8 4.6 46 88-145 379-425 (654)
303 KOG1336 Monodehydroascorbate/f 61.1 13 0.00029 36.1 4.6 52 88-143 129-180 (478)
304 PLN02785 Protein HOTHEAD 60.5 21 0.00045 36.3 6.2 60 91-150 225-296 (587)
305 PRK12844 3-ketosteroid-delta-1 60.3 13 0.00027 37.7 4.5 44 286-329 505-554 (557)
306 TIGR03862 flavo_PP4765 unchara 60.2 11 0.00024 36.0 3.9 38 287-324 335-374 (376)
307 TIGR02360 pbenz_hydroxyl 4-hyd 60.1 27 0.00059 33.4 6.7 63 86-150 103-170 (390)
308 COG3573 Predicted oxidoreducta 59.6 25 0.00053 32.9 5.7 54 86-141 149-225 (552)
309 TIGR01811 sdhA_Bsu succinate d 59.0 26 0.00056 35.8 6.6 42 283-324 378-424 (603)
310 PRK12831 putative oxidoreducta 58.6 13 0.00029 36.5 4.3 40 284-326 422-461 (464)
311 PRK07538 hypothetical protein; 58.4 35 0.00075 32.8 7.2 61 88-149 104-171 (413)
312 TIGR01424 gluta_reduc_2 glutat 58.0 26 0.00057 34.2 6.3 51 88-144 92-142 (446)
313 PLN02661 Putative thiazole syn 57.5 12 0.00027 35.3 3.6 39 288-326 286-328 (357)
314 PRK12771 putative glutamate sy 56.7 33 0.00071 34.7 6.9 48 95-144 314-380 (564)
315 PTZ00318 NADH dehydrogenase-li 55.4 26 0.00055 34.0 5.7 40 286-326 306-348 (424)
316 COG0445 GidA Flavin-dependent 55.1 20 0.00043 35.8 4.6 51 242-298 317-369 (621)
317 PRK06175 L-aspartate oxidase; 54.9 35 0.00076 33.2 6.5 44 283-326 339-388 (433)
318 TIGR01316 gltA glutamate synth 54.1 18 0.00039 35.4 4.4 38 285-325 412-449 (449)
319 TIGR01318 gltD_gamma_fam gluta 53.8 22 0.00047 35.1 4.9 39 285-326 428-466 (467)
320 PRK06263 sdhA succinate dehydr 53.8 17 0.00036 36.7 4.2 42 284-325 357-403 (543)
321 PRK12810 gltD glutamate syntha 52.9 18 0.00039 35.6 4.2 39 285-326 427-465 (471)
322 COG2081 Predicted flavoprotein 51.6 17 0.00036 34.7 3.5 38 287-324 367-406 (408)
323 PRK07845 flavoprotein disulfid 51.0 50 0.0011 32.5 7.0 38 284-324 300-337 (466)
324 PRK12770 putative glutamate sy 50.7 23 0.00049 33.3 4.4 39 285-326 312-350 (352)
325 COG0562 Glf UDP-galactopyranos 50.0 8.9 0.00019 35.4 1.4 102 31-148 142-245 (374)
326 PRK12839 hypothetical protein; 50.0 20 0.00043 36.4 4.0 41 286-326 523-569 (572)
327 TIGR00551 nadB L-aspartate oxi 48.8 24 0.00053 34.9 4.4 43 283-325 341-389 (488)
328 TIGR01812 sdhA_frdA_Gneg succi 48.6 25 0.00054 35.6 4.5 40 286-325 357-402 (566)
329 TIGR01372 soxA sarcosine oxida 47.9 23 0.00051 38.5 4.4 38 286-327 436-473 (985)
330 PRK12842 putative succinate de 47.7 25 0.00055 35.6 4.4 41 286-326 522-568 (574)
331 TIGR01176 fum_red_Fp fumarate 47.6 27 0.00059 35.5 4.6 44 283-326 365-414 (580)
332 PRK12779 putative bifunctional 47.3 58 0.0013 35.3 7.2 48 96-143 494-561 (944)
333 PRK07121 hypothetical protein; 47.2 24 0.00053 34.9 4.2 39 286-324 447-490 (492)
334 PRK12809 putative oxidoreducta 47.0 24 0.00053 36.3 4.2 39 285-326 597-635 (639)
335 PRK08641 sdhA succinate dehydr 46.5 26 0.00057 35.7 4.3 42 284-325 364-410 (589)
336 PRK13984 putative oxidoreducta 46.3 26 0.00056 35.8 4.2 39 284-326 564-602 (604)
337 TIGR01317 GOGAT_sm_gam glutama 45.9 25 0.00054 34.9 3.9 39 285-326 441-479 (485)
338 PRK11749 dihydropyrimidine deh 45.8 26 0.00056 34.3 4.1 40 284-326 413-452 (457)
339 TIGR03315 Se_ygfK putative sel 45.7 29 0.00062 37.7 4.5 40 285-327 802-841 (1012)
340 TIGR01317 GOGAT_sm_gam glutama 45.5 54 0.0012 32.5 6.2 46 96-142 346-412 (485)
341 TIGR01421 gluta_reduc_1 glutat 45.4 57 0.0012 31.9 6.4 37 284-323 291-327 (450)
342 PLN02546 glutathione reductase 45.2 48 0.001 33.5 5.9 38 284-324 376-413 (558)
343 TIGR01816 sdhA_forward succina 45.0 25 0.00054 35.6 3.9 41 286-326 351-397 (565)
344 PRK12779 putative bifunctional 44.9 28 0.00062 37.6 4.4 45 285-332 589-633 (944)
345 PRK09231 fumarate reductase fl 44.6 28 0.00061 35.4 4.2 43 284-326 367-415 (582)
346 TIGR02485 CobZ_N-term precorri 43.9 27 0.00059 33.9 3.9 39 286-324 385-429 (432)
347 PRK12845 3-ketosteroid-delta-1 43.1 24 0.00053 35.7 3.4 38 286-323 520-563 (564)
348 PRK12834 putative FAD-binding 42.9 24 0.00052 35.6 3.4 38 286-323 502-548 (549)
349 PRK09077 L-aspartate oxidase; 42.9 35 0.00077 34.2 4.6 42 284-325 362-409 (536)
350 PRK12778 putative bifunctional 42.8 34 0.00073 36.0 4.6 39 285-326 712-750 (752)
351 PRK12771 putative glutamate sy 42.6 32 0.00069 34.8 4.2 40 285-327 406-445 (564)
352 PRK09853 putative selenate red 42.3 32 0.00069 37.3 4.2 40 285-327 804-843 (1019)
353 PRK12814 putative NADPH-depend 42.1 34 0.00073 35.3 4.4 40 285-327 463-502 (652)
354 PRK08401 L-aspartate oxidase; 41.9 42 0.0009 33.0 4.8 41 284-324 319-365 (466)
355 COG1252 Ndh NADH dehydrogenase 41.5 37 0.0008 32.7 4.2 53 87-145 58-112 (405)
356 PRK05675 sdhA succinate dehydr 41.4 37 0.0008 34.5 4.4 40 286-325 360-405 (570)
357 PRK06134 putative FAD-binding 41.1 28 0.0006 35.4 3.5 41 286-326 526-572 (581)
358 PRK09078 sdhA succinate dehydr 41.1 33 0.00072 35.0 4.1 41 286-326 383-429 (598)
359 PRK07843 3-ketosteroid-delta-1 41.1 28 0.00061 35.1 3.6 39 286-324 512-556 (557)
360 TIGR03378 glycerol3P_GlpB glyc 40.9 27 0.00059 33.8 3.2 40 280-322 373-419 (419)
361 PRK07573 sdhA succinate dehydr 40.8 59 0.0013 33.5 5.9 38 283-320 414-456 (640)
362 PRK12835 3-ketosteroid-delta-1 40.4 34 0.00075 34.8 4.1 42 286-327 525-572 (584)
363 PRK08958 sdhA succinate dehydr 40.4 39 0.00085 34.4 4.5 40 286-325 378-423 (588)
364 PLN02815 L-aspartate oxidase 40.1 42 0.0009 34.3 4.6 44 282-325 384-433 (594)
365 PRK06452 sdhA succinate dehydr 40.0 43 0.00094 33.9 4.7 42 285-326 356-404 (566)
366 TIGR01789 lycopene_cycl lycope 39.9 54 0.0012 31.2 5.1 38 100-143 100-137 (370)
367 PRK12837 3-ketosteroid-delta-1 39.8 25 0.00053 35.1 2.9 39 286-324 467-511 (513)
368 PLN02852 ferredoxin-NADP+ redu 39.7 33 0.00071 34.1 3.7 40 286-327 384-423 (491)
369 PF03486 HI0933_like: HI0933-l 38.6 29 0.00062 33.6 3.0 34 286-319 373-408 (409)
370 PLN00128 Succinate dehydrogena 38.6 42 0.00091 34.5 4.4 41 286-326 421-467 (635)
371 KOG1298 Squalene monooxygenase 38.5 3.8E+02 0.0081 26.0 11.6 58 87-147 148-212 (509)
372 PRK06116 glutathione reductase 38.4 42 0.00092 32.7 4.3 37 285-324 292-328 (450)
373 PRK07803 sdhA succinate dehydr 38.4 34 0.00074 35.2 3.7 41 285-325 402-447 (626)
374 PRK08626 fumarate reductase fl 38.2 1E+02 0.0022 31.9 7.1 43 284-326 381-430 (657)
375 PRK08071 L-aspartate oxidase; 37.6 40 0.00087 33.6 4.0 42 284-325 341-388 (510)
376 PRK05945 sdhA succinate dehydr 37.6 41 0.00088 34.2 4.1 40 286-325 368-413 (575)
377 PRK05329 anaerobic glycerol-3- 37.6 34 0.00073 33.3 3.4 40 286-326 378-421 (422)
378 PRK06481 fumarate reductase fl 36.6 37 0.00081 33.8 3.6 40 286-325 459-503 (506)
379 PRK08205 sdhA succinate dehydr 36.6 42 0.00092 34.1 4.0 40 286-325 373-418 (583)
380 PRK08274 tricarballylate dehyd 36.3 40 0.00086 33.1 3.7 41 286-326 416-462 (466)
381 PTZ00139 Succinate dehydrogena 36.2 39 0.00085 34.6 3.7 40 286-325 400-445 (617)
382 TIGR03143 AhpF_homolog putativ 35.7 39 0.00084 34.1 3.6 41 285-327 270-310 (555)
383 PRK05976 dihydrolipoamide dehy 35.6 1.1E+02 0.0024 30.1 6.7 37 285-324 307-343 (472)
384 KOG2415 Electron transfer flav 34.5 57 0.0012 31.5 4.1 55 87-142 184-254 (621)
385 PRK12843 putative FAD-binding 33.8 47 0.001 33.7 3.8 41 286-326 527-573 (578)
386 PRK14727 putative mercuric red 33.4 49 0.0011 32.7 3.8 37 285-324 310-346 (479)
387 PRK05249 soluble pyridine nucl 33.1 52 0.0011 32.1 4.0 37 285-324 299-335 (461)
388 PRK06069 sdhA succinate dehydr 33.0 60 0.0013 33.0 4.4 39 287-325 370-414 (577)
389 PRK08275 putative oxidoreducta 32.8 42 0.00091 33.9 3.3 41 283-325 364-404 (554)
390 KOG4716 Thioredoxin reductase 32.1 89 0.0019 29.4 4.8 65 80-146 232-302 (503)
391 PRK07057 sdhA succinate dehydr 31.8 50 0.0011 33.6 3.7 40 286-325 381-426 (591)
392 PRK13748 putative mercuric red 31.6 55 0.0012 32.9 4.0 36 285-323 392-427 (561)
393 PRK06327 dihydrolipoamide dehy 31.6 1.4E+02 0.0031 29.3 6.7 37 285-324 311-347 (475)
394 PRK06416 dihydrolipoamide dehy 31.3 1.3E+02 0.0028 29.4 6.4 37 285-324 298-334 (462)
395 PRK07512 L-aspartate oxidase; 31.2 60 0.0013 32.4 4.1 43 284-326 350-398 (513)
396 COG1053 SdhA Succinate dehydro 30.7 67 0.0015 32.5 4.3 58 86-144 138-202 (562)
397 TIGR01423 trypano_reduc trypan 30.6 71 0.0015 31.7 4.4 37 285-324 315-351 (486)
398 PRK06292 dihydrolipoamide dehy 30.0 62 0.0013 31.6 3.9 36 285-323 295-330 (460)
399 COG1249 Lpd Pyruvate/2-oxoglut 29.7 69 0.0015 31.5 4.1 36 285-323 299-334 (454)
400 PLN02507 glutathione reductase 29.6 70 0.0015 31.8 4.2 38 284-324 326-363 (499)
401 KOG1399 Flavin-containing mono 28.7 1.4E+02 0.0031 29.2 6.1 56 87-144 91-153 (448)
402 PTZ00306 NADH-dependent fumara 28.7 68 0.0015 35.7 4.3 42 286-327 858-904 (1167)
403 PRK14694 putative mercuric red 28.5 69 0.0015 31.5 3.9 38 284-324 298-335 (468)
404 COG0492 TrxB Thioredoxin reduc 28.5 65 0.0014 29.8 3.5 41 284-326 261-301 (305)
405 PRK06467 dihydrolipoamide dehy 28.5 69 0.0015 31.6 3.9 37 285-324 301-337 (471)
406 COG1053 SdhA Succinate dehydro 28.4 1.4E+02 0.0031 30.2 6.2 43 285-327 366-414 (562)
407 TIGR00275 flavoprotein, HI0933 28.3 41 0.00088 32.4 2.2 32 287-318 366-399 (400)
408 PRK07804 L-aspartate oxidase; 27.5 80 0.0017 31.8 4.2 42 284-325 366-413 (541)
409 PTZ00367 squalene epoxidase; P 27.2 6.8E+02 0.015 25.4 16.4 36 288-323 336-373 (567)
410 PRK07818 dihydrolipoamide dehy 27.1 79 0.0017 31.0 4.1 37 285-324 300-336 (466)
411 PRK06115 dihydrolipoamide dehy 26.9 64 0.0014 31.7 3.4 38 284-324 301-338 (466)
412 PF02006 DUF137: Protein of un 26.4 86 0.0019 26.1 3.4 49 87-139 44-96 (178)
413 PRK09853 putative selenate red 26.4 1.8E+02 0.0039 31.8 6.7 49 98-149 719-784 (1019)
414 PRK06444 prephenate dehydrogen 26.2 1.4E+02 0.0031 25.5 5.0 39 88-151 12-50 (197)
415 PRK06370 mercuric reductase; V 26.2 87 0.0019 30.7 4.2 38 284-324 297-334 (463)
416 PRK12814 putative NADPH-depend 25.5 2.1E+02 0.0046 29.5 7.0 45 97-143 372-436 (652)
417 PF03807 F420_oxidored: NADP o 25.1 53 0.0012 23.9 1.9 62 87-151 9-80 (96)
418 COG1445 FrwB Phosphotransferas 24.9 58 0.0013 25.5 2.0 47 88-145 20-69 (122)
419 PRK07395 L-aspartate oxidase; 24.3 99 0.0021 31.3 4.2 41 283-323 355-401 (553)
420 PRK06854 adenylylsulfate reduc 24.3 99 0.0022 31.7 4.3 42 283-325 390-431 (608)
421 PRK13800 putative oxidoreducta 24.1 75 0.0016 34.3 3.5 40 284-325 370-409 (897)
422 TIGR01438 TGR thioredoxin and 24.0 1.1E+02 0.0024 30.3 4.4 38 284-323 306-343 (484)
423 PTZ00052 thioredoxin reductase 22.9 1.1E+02 0.0023 30.5 4.1 38 285-324 304-341 (499)
424 TIGR01350 lipoamide_DH dihydro 22.6 1E+02 0.0022 30.1 3.9 38 285-325 296-333 (461)
425 PF08491 SE: Squalene epoxidas 22.4 2.9E+02 0.0063 25.1 6.3 40 285-324 126-167 (276)
426 COG3634 AhpF Alkyl hydroperoxi 21.3 1.6E+02 0.0034 27.9 4.5 57 87-143 267-324 (520)
427 PF06072 Herpes_US9: Alphaherp 21.1 65 0.0014 21.6 1.4 19 15-33 4-22 (60)
428 KOG2311 NAD/FAD-utilizing prot 20.7 1.4E+02 0.0031 29.5 4.1 69 240-317 344-413 (679)
429 TIGR03452 mycothione_red mycot 20.7 1.2E+02 0.0025 29.7 3.9 37 285-324 292-328 (452)
430 TIGR02053 MerA mercuric reduct 20.2 1.3E+02 0.0028 29.4 4.1 37 285-324 293-329 (463)
431 PRK07846 mycothione reductase; 20.1 1.4E+02 0.0029 29.3 4.2 37 285-324 289-325 (451)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=6.5e-38 Score=308.26 Aligned_cols=313 Identities=20% Similarity=0.252 Sum_probs=253.1
Q ss_pred chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhH
Q 017625 11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFE 90 (368)
Q Consensus 11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~ 90 (368)
.+.|..+|++|+.+|+++++.+++++++||+|++.+.++++++++|+..++..|..+. ...+++++.|++||+++.|++
T Consensus 221 ~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~ 299 (569)
T PLN02487 221 MRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSG 299 (569)
T ss_pred ccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHH
Confidence 4557788999999999998888889999999999999999999999999999886543 344456788999998767999
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCC-Cc--eEEEEEE--C--CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 163 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g--~v~~v~~--~--g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i 163 (368)
++++.|+++|++|+++++|++|..+++ +| +|++|++ + ++.+.+|.||+|+|++.+.+|+++.. +..++++++
T Consensus 300 pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~-~~~~~~~~l 378 (569)
T PLN02487 300 PIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQW-REYEFFDNI 378 (569)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchh-hccHHHhHH
Confidence 999999999999999999999999742 13 4788888 3 34689999999999999999998762 223457788
Q ss_pred hccCccceEEEEEEecCCCCCCCCCc------eeecCCC-----Ccccee-eecccccc-cc-CCCCCeEEEEEeecCCC
Q 017625 164 LNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAWTF-FDLNKIYD-EH-KDDSATVIQADFYHANE 229 (368)
Q Consensus 164 ~~l~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~-~d~s~~~~-~~-~~~~~~v~~~~~~~~~~ 229 (368)
..+.+.++++++|+||+++..+.+.+ -+.+++. ...|.+ .|.+-..+ ++ .+..++++.++++++++
T Consensus 379 ~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~ 458 (569)
T PLN02487 379 YKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDP 458 (569)
T ss_pred hcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCcc
Confidence 89988999999999998865432111 0222221 112322 24221111 12 22346788888888888
Q ss_pred CCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchH
Q 017625 230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQER 309 (368)
Q Consensus 230 ~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~eg 309 (368)
+.+++++++++.++++|.++||...+.++.+..+.+.+++.+.+.||....||.+.|+++|||+||||+.++|| .+|||
T Consensus 459 ~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~Eg 537 (569)
T PLN02487 459 YMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEG 537 (569)
T ss_pred ccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHH
Confidence 88999999999999999999999876668888888899999999999988889999999999999999999999 79999
Q ss_pred HhHHHHHHHHHHHHHhC
Q 017625 310 SYVTGLEAANRVVDYLG 326 (368)
Q Consensus 310 A~~Sg~~aA~~Il~~~~ 326 (368)
|+.||..||+.|+++.+
T Consensus 538 Av~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 538 ATLSGRQAAAYICEAGE 554 (569)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998875
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.6e-35 Score=289.13 Aligned_cols=309 Identities=19% Similarity=0.260 Sum_probs=242.1
Q ss_pred chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhH
Q 017625 11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFE 90 (368)
Q Consensus 11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~ 90 (368)
.+.|..++++|+.+|+++++.++.++++||+|++.+.++.+++++|+..++..++.+. ....++...+++||+++.+.+
T Consensus 145 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s~~~~~~g~~~~~l~~ 223 (474)
T TIGR02732 145 MKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEASKLRMLKGSPDKYLTK 223 (474)
T ss_pred hhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcceeeeecCCcchhHHH
Confidence 3556778999999999998888888999999999999999999999999988877544 334566778889998877899
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCC-Cc--eEEEEEEC-C---eEEecCEEEEeeChhhHHHhhhhccccCchhHHhh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKV 163 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g--~v~~v~~~-g---~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i 163 (368)
+|.+.|+++|++|+++++|++|..+++ ++ +|++|.++ | +++.||+||+|+|++.+.+|+++.. ...+....+
T Consensus 224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~-~~~~~~~~l 302 (474)
T TIGR02732 224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEW-RQFEEFDNI 302 (474)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhh-hcCHHHhhH
Confidence 999999999999999999999998641 12 37777774 3 4689999999999999999998742 123456677
Q ss_pred hccCccceEEEEEEecCCCCCCCCCce------eecCC-----CCcccee-eecccccc-ccC-CCCCeEEEEEeecCCC
Q 017625 164 LNLASIDVVSVKLWFDKKVTVPNVSNA------CSGFG-----DSLAWTF-FDLNKIYD-EHK-DDSATVIQADFYHANE 229 (368)
Q Consensus 164 ~~l~~~~~~~v~l~~~~~~~~~~~~~~------~~~~~-----~~~~~~~-~d~s~~~~-~~~-~~~~~v~~~~~~~~~~ 229 (368)
..+.+.++.+++++|++++..+.+.+. +.+.+ ....|.+ .|.+-..+ .|. +..+.++.++.+.+.+
T Consensus 303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (474)
T TIGR02732 303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDP 382 (474)
T ss_pred hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhh
Confidence 888889999999999987654321110 01111 1112322 23221112 232 1234556666676667
Q ss_pred CCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchH
Q 017625 230 LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQER 309 (368)
Q Consensus 230 ~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~eg 309 (368)
+.+++++++++.++++|+++||...+.++.+..+.+.+++.+.+.||....+|.+.|+++|||+||||+.++|| ++|||
T Consensus 383 ~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~eg 461 (474)
T TIGR02732 383 WMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEG 461 (474)
T ss_pred hcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhH
Confidence 77899999999999999999998776678888888899999999999988899999999999999999999999 79999
Q ss_pred HhHHHHHHHHHHH
Q 017625 310 SYVTGLEAANRVV 322 (368)
Q Consensus 310 A~~Sg~~aA~~Il 322 (368)
|+.||+.||+.|+
T Consensus 462 Av~sG~~aA~~i~ 474 (474)
T TIGR02732 462 ATLSGRQAAAAIL 474 (474)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=6.3e-35 Score=290.13 Aligned_cols=308 Identities=17% Similarity=0.256 Sum_probs=245.4
Q ss_pred hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017625 14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM 93 (368)
Q Consensus 14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~ 93 (368)
+.++|++|+.||+++.++++.+.+.++++++.+.++.+++++|+..++..+..+ +....++.+.+++|++.+.|+++|+
T Consensus 237 ~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~~~~~~G~~~~~l~~~l~ 315 (567)
T PLN02612 237 VEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSKMAFLDGNPPERLCMPIV 315 (567)
T ss_pred hhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCceEeeecCCchHHHHHHHH
Confidence 357889999999999999999999999999999999999999999998877765 3444566777888886578999999
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceE
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 172 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~ 172 (368)
+.|+++|++|++|++|++|..+++ +++++|++. |+++.||+||+|+|+..+..|++.... +.++.+.+..+.+.+++
T Consensus 316 ~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~ 393 (567)
T PLN02612 316 DHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVI 393 (567)
T ss_pred HHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeE
Confidence 999999999999999999998765 666667764 778999999999999999988876432 23556677778888899
Q ss_pred EEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccC
Q 017625 173 SVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKD 252 (368)
Q Consensus 173 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~ 252 (368)
+++++|+++++.+.. ..+++.. .....+.+++..++.+.+++.+++.+++..+.+|.+++++++++.++++|+++||+
T Consensus 394 ~v~l~~dr~~~~~~~-~~~~~~~-~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~ 471 (567)
T PLN02612 394 NVHIWFDRKLKNTYD-HLLFSRS-PLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPD 471 (567)
T ss_pred EEEEEECcccCCCCC-ceeecCC-CCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCc
Confidence 999999999753322 2222211 11122345554444454455677766666667788899999999999999999997
Q ss_pred CC-----CCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 253 FS-----TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 253 ~~-----~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.. ..+++...+.+.|.+++.+.|+....+|.+.+|++||||||||+.++|+ ++||||+.||++||+.|+++++.
T Consensus 472 ~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 472 EISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred ccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 62 1345666666788888877888777788888999999999999998898 79999999999999999999875
No 4
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=2.4e-31 Score=257.09 Aligned_cols=293 Identities=27% Similarity=0.332 Sum_probs=220.7
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 94 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~ 94 (368)
..++++|+.+|++++++++++++.+++|++.++++.+++++|+..++..+...+........+.|++||+++.+.++|++
T Consensus 126 ~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~ 205 (419)
T TIGR03467 126 RALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARR 205 (419)
T ss_pred cccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHH
Confidence 35789999999999888999999999999999999999999999888877654323323345678899976655677999
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEE-ECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccceEE
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVS 173 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~-~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~ 173 (368)
.|+++|++|++|++|++|..++ ++++.+. .+|+++.||+||+|+|++++.+|+++. ...+.+..+++.++.+
T Consensus 206 ~l~~~g~~i~~~~~V~~i~~~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~ 278 (419)
T TIGR03467 206 WLDSRGGEVRLGTRVRSIEANA--GGIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITT 278 (419)
T ss_pred HHHHcCCEEEcCCeeeEEEEcC--CcceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEE
Confidence 9999999999999999999887 4444333 357789999999999999999997652 2345677888888889
Q ss_pred EEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhccCC
Q 017625 174 VKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF 253 (368)
Q Consensus 174 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~ 253 (368)
+++.++++++.+.+...+. .....|. ++.+.. . +...++.+......++.+++++++++.++++|+++||..
T Consensus 279 v~l~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~ 350 (419)
T TIGR03467 279 VHLRLDRAVRLPAPMVGLV--GGLAQWL-FDRGQL----A-GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRV 350 (419)
T ss_pred EEEEeCCCcCCCCCeeeec--CCceeEE-EECCcC----C-CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCcc
Confidence 9999999876443322221 1223342 332211 1 122333333334455677899999999999999999976
Q ss_pred CCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 254 STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 254 ~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
....+++..+.+|.++.+.+.||....+|...++.+|||||||+++++++ ++||||+.||.+||+.|++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 351 AGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred ccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHhC
Confidence 43346666677787777777777655567666788999999999998888 7999999999999999874
No 5
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.1e-31 Score=260.06 Aligned_cols=302 Identities=22% Similarity=0.344 Sum_probs=226.8
Q ss_pred hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHH
Q 017625 14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWM 93 (368)
Q Consensus 14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~ 93 (368)
+.++|++|+.+|+++.++++.+.+.+++|++.++++.+|+++|+..++..+..++ ....+....+.+|+.+..|+++|.
T Consensus 142 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~~~~g~~~~~l~~~l~ 220 (453)
T TIGR02731 142 VEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMAFLDGAPPERLCQPIV 220 (453)
T ss_pred hhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeEeecCCChHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999988877654 322334445566665567999999
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-----EEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA 167 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-----~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~ 167 (368)
+.++++|++|++|++|++|..+++ |+|++|++. |+ ++.||.||+|+|++.+.+|++... +...+.+.+..++
T Consensus 221 ~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~ 298 (453)
T TIGR02731 221 DYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLE 298 (453)
T ss_pred HHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCC
Confidence 999999999999999999987654 667777774 44 789999999999999989986541 1134556677777
Q ss_pred ccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHh
Q 017625 168 SIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLS 247 (368)
Q Consensus 168 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~l~ 247 (368)
+.++.+++++++++++.. . ..++..+... ....+.+.....+.+++++++.+.+.....+.+++++++++.++++|+
T Consensus 299 ~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~ 375 (453)
T TIGR02731 299 GVPVINVHIWFDRKLTTV-D-HLLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELA 375 (453)
T ss_pred CCcEEEEEEEEccccCCC-C-ceeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHH
Confidence 888999999999987532 1 1122211111 111222222122222445666654444556777899999999999999
Q ss_pred hhccCC----CCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017625 248 KCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 322 (368)
Q Consensus 248 ~~~p~~----~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il 322 (368)
++||+. ...++++..+.+.+++.+.+.||....+|...+|++||||||++++.+|+ ++||||+.||..||+.|+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 376 KLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred HhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence 999853 12346666777788887767788655677778899999999999998898 799999999999999873
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.97 E-value=2e-28 Score=237.84 Aligned_cols=302 Identities=19% Similarity=0.225 Sum_probs=221.1
Q ss_pred hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcC--CCcceeeecCCcchhhhHH
Q 017625 14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWCRGTLREKIFEP 91 (368)
Q Consensus 14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~--~~~~~~~~~GG~~~~L~~~ 91 (368)
+.+++++|+++|+++. .+++.++.+++|++...++.+++++|+..++..+........ ......+++||+ +.|+++
T Consensus 126 ~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~ 203 (434)
T PRK07233 126 WRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDA 203 (434)
T ss_pred ccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHH
Confidence 3567899999999985 578888899999999999999999999887766654321111 122356889995 689999
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccce
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDV 171 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~ 171 (368)
|.+.+++.|++|+++++|++|..++ ++++.+..++++++||+||+|+|+..+.+++++.. ....+.+..+.+.+.
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~ 278 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGV 278 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccce
Confidence 9999999999999999999999876 55666666678999999999999999999885421 334556777888888
Q ss_pred EEEEEEecCCCCCCCCCceee-cCCCCccceeeeccccccccCCCCCeEEEEEee-cC-CCCCCCCHHHHHHHHHHHHhh
Q 017625 172 VSVKLWFDKKVTVPNVSNACS-GFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HA-NELMPLKDDQVVAKAVSYLSK 248 (368)
Q Consensus 172 ~~v~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~-~~~~~~~~~e~~~~~~~~l~~ 248 (368)
+++++++++++.. .+.... ..+..... ++..++..+...+++.+++.+..+ .. .++..++++++++.+++.|++
T Consensus 279 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (434)
T PRK07233 279 VCMVLKLRRPLTD--YYWLNINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRK 355 (434)
T ss_pred EEEEEEecCCCCC--CceeeecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence 8889999887542 111111 11111112 233333322222134444333323 22 223456889999999999999
Q ss_pred hccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 249 CIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 249 ~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++|++...++++..+.+|+++.+.+.||....+|...++.+|||||||+....++ ++|++|+.||+.||+.|++.++
T Consensus 356 ~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 356 MFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred hCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence 9998765467788888899998888888666677777889999999996543344 5899999999999999998875
No 7
>PRK07208 hypothetical protein; Provisional
Probab=99.93 E-value=4.5e-24 Score=209.96 Aligned_cols=310 Identities=16% Similarity=0.144 Sum_probs=211.8
Q ss_pred cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHH---------HHHHHhh------------cCCCcc
Q 017625 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILA------------HQKNFD 76 (368)
Q Consensus 18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~---------l~~~~~~------------~~~~~~ 76 (368)
+++|+.+|+++ .+++++++.+++|++...|+.+++++|+.+++.. +...+.. ......
T Consensus 131 ~~~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (479)
T PRK07208 131 EEDSFEDWVIN-RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEE 209 (479)
T ss_pred CCCCHHHHHHH-hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeE
Confidence 67999999997 6899999999999999999999999999865432 2211111 000124
Q ss_pred eeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhhHHHhhhh
Q 017625 77 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 77 ~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
+.+++||++ .|+++|++.+++.|++|++|++|++|..+++ +.++.+..+ |+ ++.||+||+|+|+..+.+++.+
T Consensus 210 ~~~p~gG~~-~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~ 287 (479)
T PRK07208 210 FRYPKLGPG-QLWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDP 287 (479)
T ss_pred EeCCCCCcc-hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCC
Confidence 567899974 7999999999999999999999999998874 444445442 32 5899999999999999988764
Q ss_pred ccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCC-eEEEEEee--cCC
Q 017625 152 SILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADFY--HAN 228 (368)
Q Consensus 152 ~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~-~v~~~~~~--~~~ 228 (368)
. ++ ....+.+..+.+.++.+++++++++...+..+..+.+..... ..+...++..+...+++. ..+...++ ..+
T Consensus 288 ~-~~-~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~ 364 (479)
T PRK07208 288 P-PP-PEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKV-GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGD 364 (479)
T ss_pred C-CC-HHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCcc-ceecccccCCcccCCCCCceEEEEEEEccCCC
Confidence 3 22 345566677888888889999988743222111111111000 001111111122222233 33333232 233
Q ss_pred CCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCC---CCCCCCceEEeccccccCCCCc
Q 017625 229 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSW 305 (368)
Q Consensus 229 ~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~---~~~~~~~L~laGd~~~~~~~~~ 305 (368)
...+++++++++.++++|.++.+ +.+..++...+.+|++++|.|.+++....+. ..++.+|||++|++....| .
T Consensus 365 ~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~ 441 (479)
T PRK07208 365 DLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--N 441 (479)
T ss_pred ccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--C
Confidence 44468899999999999999854 3334688888889999999998876533221 2256799999998875444 4
Q ss_pred cchHHhHHHHHHHHHHHHHhCCCCccccccCCCC
Q 017625 306 SQERSYVTGLEAANRVVDYLGDGSFSKIIPVEED 339 (368)
Q Consensus 306 ~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~ 339 (368)
+|++|+.||..+|+.|++.- ....+||++.|
T Consensus 442 ~~d~a~~sg~~~a~~i~~~~---~~~~~~~~~~~ 472 (479)
T PRK07208 442 NQDHSMLTAMLAVENIIAGE---TKHDIWQVNTE 472 (479)
T ss_pred ChhHHHHHHHHHHHHHhcCC---ccCCceEeccc
Confidence 89999999999999998884 22457776554
No 8
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=4.9e-25 Score=208.05 Aligned_cols=334 Identities=23% Similarity=0.275 Sum_probs=253.7
Q ss_pred CchhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhh
Q 017625 10 TDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 89 (368)
Q Consensus 10 ~~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~ 89 (368)
.++.++++|++|++|||++.+.+...++..|.|+.....+.+++.+|+..++.++..++....++.....++|+..+.+.
T Consensus 139 ~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~ 218 (485)
T COG3349 139 ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLL 218 (485)
T ss_pred hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceee
Confidence 37889999999999999999999999999999999999999999999999998888776555466666677899899999
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCC--CceEEEEEECCe---EEecCEEEEeeChhhHHHhhhhccccCchhHHhhh
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 164 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~~g~---~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~ 164 (368)
.++.+++.+.|.++++..+|++|..+.. +.+++++.+.+. ...++.|+.+...+.+..+++..+. +....+.+.
T Consensus 219 ~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~-~~~~f~~ly 297 (485)
T COG3349 219 QPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP-KWSNFDGLY 297 (485)
T ss_pred ehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-ccccccccc
Confidence 9999999999999999999999998752 145788777643 4677888888888888888887642 245567888
Q ss_pred ccCccceEEEEEEecCCCCCCCCCceeec------CCCCccceeeeccccccccCCCC-CeEEEEEeecCCCCCCCCHHH
Q 017625 165 NLASIDVVSVKLWFDKKVTVPNVSNACSG------FGDSLAWTFFDLNKIYDEHKDDS-ATVIQADFYHANELMPLKDDQ 237 (368)
Q Consensus 165 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~s~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~e 237 (368)
.++..|+++++++++...+.....+..+. .+.+....+.++...++.+..++ ++.+.....+...|...++++
T Consensus 298 ~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~ 377 (485)
T COG3349 298 GLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEA 377 (485)
T ss_pred cccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhh
Confidence 88889999999999865432222110000 11122223445444443443222 233333345666777788999
Q ss_pred HHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHH
Q 017625 238 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEA 317 (368)
Q Consensus 238 ~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~a 317 (368)
+...+.+.+...+|....++ ......+.+++++..+||+..+||.++|+++|++++|||+...+ +++||+|..||+.|
T Consensus 378 ~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~-~~smE~A~~sGl~A 455 (485)
T COG3349 378 IVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPY-LGSMEGATLSGLLA 455 (485)
T ss_pred HHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCC-cCccchhhhhHHHH
Confidence 99999999999999876655 44555568899999999999999999999999999999997654 48999999999999
Q ss_pred HHHHHHHhCCCCccccccCCCCchhHHHHH
Q 017625 318 ANRVVDYLGDGSFSKIIPVEEDEPHIEALR 347 (368)
Q Consensus 318 A~~Il~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (368)
|+.|+..+....+ -......+.+++.+.+
T Consensus 456 A~~v~~~~~~~~~-~~~~~~~~~~~~~vl~ 484 (485)
T COG3349 456 ANAILDNLGHHAP-LDRRDLSDPAPFGVLR 484 (485)
T ss_pred HHHHHHhhhhcCc-cccccccCcCchhhcc
Confidence 9999998886233 2233334555555543
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.93 E-value=1.4e-23 Score=205.56 Aligned_cols=291 Identities=14% Similarity=0.190 Sum_probs=204.9
Q ss_pred cCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH----------Hhhc---C-----------C
Q 017625 18 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI----------ILAH---Q-----------K 73 (368)
Q Consensus 18 d~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~----------~~~~---~-----------~ 73 (368)
.++|+.||+++ .+++++.+.+++|++.+.|+.+++++|+..+...+... +... . .
T Consensus 135 ~d~s~~e~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 213 (462)
T TIGR00562 135 KDESVEEFVRR-RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQ 213 (462)
T ss_pred CCcCHHHHHHH-hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccccccccccc
Confidence 45999999997 58899999999999999999999999998766443211 0000 0 0
Q ss_pred CcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhc
Q 017625 74 NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS 152 (368)
Q Consensus 74 ~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~ 152 (368)
+..+..+.||+ ++|+++|++.+.. ++|+++++|++|..++ +++ .|+++ |++++||+||+|+|++++..|+++.
T Consensus 214 ~~~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~ 287 (462)
T TIGR00562 214 GQDFQTLATGL-ETLPEEIEKRLKL--TKVYKGTKVTKLSHRG--SNY-TLELDNGVTVETDSVVVTAPHKAAAGLLSEL 287 (462)
T ss_pred CCceEecchhH-HHHHHHHHHHhcc--CeEEcCCeEEEEEecC--CcE-EEEECCCcEEEcCEEEECCCHHHHHHHhccc
Confidence 11134467896 5799999988862 7899999999999876 444 36655 6689999999999999999998753
Q ss_pred cccCchhHHhhhccCccceEEEEEEecCCCCCCC-C-CceeecCCC---CccceeeeccccccccCCCCCeEEEEEee--
Q 017625 153 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-V-SNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFY-- 225 (368)
Q Consensus 153 ~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-~-~~~~~~~~~---~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-- 225 (368)
+....+.+..+.+.++.++.+.|+++.+... . +..+..... ...+ +++.+ ..+...+++.+++.....
T Consensus 288 ---~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~ 362 (462)
T TIGR00562 288 ---SNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGA 362 (462)
T ss_pred ---CHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCC
Confidence 2445677888999999999999987654221 1 111111111 1123 33322 223223234445433222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCC----CCCCCCceEEeccccccC
Q 017625 226 HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTSFPNLFMAGDWITTR 301 (368)
Q Consensus 226 ~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~----~~~~~~~L~laGd~~~~~ 301 (368)
....+.+++++++++.+++.|.++++ ++. ++....+.+|++++|.+.+|.....+. .....+|||+||+|..
T Consensus 363 ~~~~~~~~~~ee~~~~v~~~L~~~~g-i~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~-- 438 (462)
T TIGR00562 363 TDESIVDLSENEIINIVLRDLKKVLN-INN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFE-- 438 (462)
T ss_pred CCccccCCCHHHHHHHHHHHHHHHhC-CCC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccC--
Confidence 22345678899999999999999996 443 367778889999999999886433222 1234579999999985
Q ss_pred CCCccchHHhHHHHHHHHHHHHHhC
Q 017625 302 HGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 302 ~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
+ .++++|+.||+.+|++|++.+.
T Consensus 439 -g-~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 439 -G-VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred -C-CcHHHHHHHHHHHHHHHHHhhc
Confidence 2 4789999999999999988764
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.92 E-value=2.8e-23 Score=203.45 Aligned_cols=290 Identities=14% Similarity=0.151 Sum_probs=199.5
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc------CCCcceeee
Q 017625 17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH------QKNFDLVWC 80 (368)
Q Consensus 17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~------~~~~~~~~~ 80 (368)
++++|+.+|+++ ++++++.+++++|++.+.|+.+++++|+...+..+..+. ..+ .....+.++
T Consensus 143 ~~~~sv~~~l~~-~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 221 (463)
T PRK12416 143 TKDTSLALFLES-FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSF 221 (463)
T ss_pred CCCCCHHHHHHH-hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEee
Confidence 478999999997 688999999999999999999999999876444432211 000 112234567
Q ss_pred cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchh
Q 017625 81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREE 159 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~ 159 (368)
+||| .+|+++|++.+++ ++|+++++|++|..++ +++ .|.+. |+++.||+||+|+|++++.+|++++.+
T Consensus 222 ~gG~-~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~l----- 290 (463)
T PRK12416 222 KGGL-STIIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRY-EISFANHESIQADYVVLAAPHDIAETLLQSNEL----- 290 (463)
T ss_pred CCCH-HHHHHHHHHhccc--ccEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcch-----
Confidence 8997 5799999998865 6899999999999877 555 46554 668999999999999999988876432
Q ss_pred HHhhhccCccceEEEEEEecCCCCC-CCC-CceeecCCCCccc-eeeeccccccccCCCCCeEEEEEeec-----CCCCC
Q 017625 160 FLKVLNLASIDVVSVKLWFDKKVTV-PNV-SNACSGFGDSLAW-TFFDLNKIYDEHKDDSATVIQADFYH-----ANELM 231 (368)
Q Consensus 160 ~~~i~~l~~~~~~~v~l~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~d~s~~~~~~~~~~~~v~~~~~~~-----~~~~~ 231 (368)
...+.++.+.++.++++.|+++.+. +.. ...+......... .....++..+... +++.++...++. .+.+.
T Consensus 291 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 369 (463)
T PRK12416 291 NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTS-GKQKLLVRMFYKSTNPVYETIK 369 (463)
T ss_pred hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcC-CCCeEEEEEEeCCCCCCchhhh
Confidence 2345677788899999999876431 111 1112111111100 0011121112112 234444333331 22356
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCC----CCCCCCCCceEEeccccccCCCCccc
Q 017625 232 PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQ 307 (368)
Q Consensus 232 ~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~----p~~~~~~~~L~laGd~~~~~~~~~~~ 307 (368)
+++++++.+.++++|.++|+ ... +++...+.+|++++|.|.+|+.... +....+.+|||+||+++.. .+|
T Consensus 370 ~~~dee~~~~~~~~L~~~lG-~~~-~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g----~~i 443 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLG-IKG-EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG----VGI 443 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhC-CCC-CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc----ccH
Confidence 67999999999999999996 333 5677888899999998887753211 1112345899999999863 479
Q ss_pred hHHhHHHHHHHHHHHHHh
Q 017625 308 ERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 308 egA~~Sg~~aA~~Il~~~ 325 (368)
++|+.||+.+|++|++.+
T Consensus 444 ~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 444 GACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998764
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.92 E-value=2.4e-23 Score=205.72 Aligned_cols=296 Identities=14% Similarity=0.198 Sum_probs=201.5
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH-----------H---hhc-----------
Q 017625 17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----------I---LAH----------- 71 (368)
Q Consensus 17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~-----------~---~~~----------- 71 (368)
.+++|+.+|+++ ++++++++.+++|++.+.|+.+++++|+..++..+... + ...
T Consensus 143 ~~~~sv~~~l~~-~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~ 221 (496)
T PLN02576 143 GREESVGEFVRR-HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDP 221 (496)
T ss_pred CCCCcHHHHHHH-hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccccccc
Confidence 478999999998 68999999999999999999999999998766553321 0 000
Q ss_pred ----CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C-eEEecCEEEEeeChh
Q 017625 72 ----QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGIS 143 (368)
Q Consensus 72 ----~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~a~p~~ 143 (368)
.........+||| +.|+++|++.+.. ++|++|++|++|..+++ +++ .|++. | ++++||+||+|+|++
T Consensus 222 ~~~~~~~~~~~~~~gG~-~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~-~~~-~v~~~~~~g~~~~~ad~VI~a~P~~ 296 (496)
T PLN02576 222 RLPKPKGQTVGSFRGGL-QTLPDALAKRLGK--DKVKLNWKVLSLSKNDD-GGY-SLTYDTPEGKVNVTAKAVVMTAPLY 296 (496)
T ss_pred ccccccCCeeEeccchH-HHHHHHHHHhhCc--CcEEcCCEEEEEEECCC-CcE-EEEEecCCCceeEEeCEEEECCCHH
Confidence 0112234558896 5799999876631 68999999999998763 323 34432 4 369999999999999
Q ss_pred hHHHhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCC-----CCc---eeecCCCC---ccceeeecccccccc
Q 017625 144 TLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSN---ACSGFGDS---LAWTFFDLNKIYDEH 212 (368)
Q Consensus 144 ~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~-----~~~---~~~~~~~~---~~~~~~d~s~~~~~~ 212 (368)
++.+++.+.. +...+.+..+.+.++.++.+.++++.+... +.. .+...... ..+ +++ +...+..
T Consensus 297 ~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~ 371 (496)
T PLN02576 297 VVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDR 371 (496)
T ss_pred HHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCC
Confidence 9999987531 345677888899999999999988755321 111 11100001 111 222 2222322
Q ss_pred CCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC---CC
Q 017625 213 KDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TS 287 (368)
Q Consensus 213 ~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~---~~ 287 (368)
.+++..++..+.. ..+.+.+++++++++.++++|.++++.....++....+.+|++++|.|.+|+....+... ..
T Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~ 451 (496)
T PLN02576 372 APEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKD 451 (496)
T ss_pred CCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHh
Confidence 2223333332222 224566789999999999999999974321133444567899999999998754322111 12
Q ss_pred C--CceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 288 F--PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 288 ~--~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
. +|||+||||+.. .++++|+.||..+|++|++.+..
T Consensus 452 ~~~~~l~~aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 452 LGLPGLFLGGNYRGG----VALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred cCCCCEEEeccccCC----ccHHHHHHHHHHHHHHHHHHHhh
Confidence 2 799999999962 47899999999999999988653
No 12
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.92 E-value=5.2e-23 Score=200.98 Aligned_cols=289 Identities=17% Similarity=0.190 Sum_probs=198.6
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH----------hhc------CCCccee
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAH------QKNFDLV 78 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~----------~~~------~~~~~~~ 78 (368)
...+++|+.+|+++ ++++.+++.++.|++...|+.+++++|+..+...+..+. ... .......
T Consensus 136 ~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T PRK11883 136 KPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFG 214 (451)
T ss_pred CCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceE
Confidence 34678999999997 689999999999999999999999999876554332211 000 0122334
Q ss_pred eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHHHhhhhccccCc
Q 017625 79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNR 157 (368)
Q Consensus 79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~ 157 (368)
+++||+ ..|++.|++.+... +|+++++|++|..++ +++. |.+ +|++++||+||+|+|+.++.+++.++
T Consensus 215 ~~~~G~-~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----- 283 (451)
T PRK11883 215 TLKGGL-QSLIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYE-IVLSNGGEIEADAVIVAVPHPVLPSLFVAP----- 283 (451)
T ss_pred eeccHH-HHHHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCHHHHHHhccCh-----
Confidence 678996 57999999877643 899999999999876 4453 555 47789999999999999999886542
Q ss_pred hhHHhhhccCccceEEEEEEecCCCC-CCCCCceeecCCCC--ccceeeeccccccccCCCCCeEEEEEee-cCC-CCCC
Q 017625 158 EEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMP 232 (368)
Q Consensus 158 ~~~~~i~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~-~~~~ 232 (368)
+..+.+..+.+.++.++++.+++++. .......++..+.. .....++ ++..+...+++..++...+. ... ...+
T Consensus 284 ~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~ 362 (451)
T PRK11883 284 PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVD 362 (451)
T ss_pred hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhcc
Confidence 23456778888889999999988742 12122233221111 1121232 22222222223444433221 112 2345
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEeccccccCCCCccch
Q 017625 233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGDWITTRHGSWSQE 308 (368)
Q Consensus 233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~----~p~~~~~~~~L~laGd~~~~~~~~~~~e 308 (368)
.+++++++.+++.|+++++. .. ++.+..+.+|.++++.+.++.... ++.... .+|||+||+|+. + .+++
T Consensus 363 ~~~~~~~~~~~~~L~~~~g~-~~-~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~ 435 (451)
T PRK11883 363 ATDEELVAFVLADLSKVMGI-TG-DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLP 435 (451)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CC-CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHH
Confidence 78999999999999999863 22 455677888999999888876432 122222 679999999985 2 4799
Q ss_pred HHhHHHHHHHHHHHH
Q 017625 309 RSYVTGLEAANRVVD 323 (368)
Q Consensus 309 gA~~Sg~~aA~~Il~ 323 (368)
+|+.||+.+|++|+.
T Consensus 436 ~av~sg~~~a~~i~~ 450 (451)
T PRK11883 436 DCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999975
No 13
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.91 E-value=1.3e-22 Score=200.20 Aligned_cols=295 Identities=15% Similarity=0.169 Sum_probs=187.4
Q ss_pred hccCccHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017625 16 KYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 94 (368)
Q Consensus 16 ~ld~~S~~d~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~ 94 (368)
.+..+|+.||+++++ +.++.++.+++..+....+.++++.++...+..+... ... ....+++||+ +.|+++|++
T Consensus 166 ~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~G~~~~~GG~-~~l~~aL~~ 240 (492)
T TIGR02733 166 PLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QAP--HGLWHLHGSM-QTLSDRLVE 240 (492)
T ss_pred hhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--ccC--CCceeecCcH-HHHHHHHHH
Confidence 356799999999864 3444566777754433445567788876654333221 111 2235689996 579999999
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-----eEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCc
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLAS 168 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-----~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~ 168 (368)
.++++|++|+++++|++|..++ +++.+|++. + +++.||+||+|+|+..+.+|+++..++ ..+.+.++++.+
T Consensus 241 ~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~ 317 (492)
T TIGR02733 241 ALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPE 317 (492)
T ss_pred HHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCC
Confidence 9999999999999999999887 556666553 3 578999999999999999988764432 345566777776
Q ss_pred cc-eEEEEEEecCCCC-CCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHH
Q 017625 169 ID-VVSVKLWFDKKVT-VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQV 238 (368)
Q Consensus 169 ~~-~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~~~~~-------~~~~e~ 238 (368)
.+ .+++++.+++... ...+.+....++.. ...++..+...+...+++++++.+... ....|.. ..++++
T Consensus 318 s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~ 396 (492)
T TIGR02733 318 PSGAFVFYLGVKRAALPVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQY 396 (492)
T ss_pred CCceEEEEEeecccccCCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHH
Confidence 54 5578888887421 11111111122211 111222222223334345665533222 1112221 235668
Q ss_pred HHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC-------------CCCc-CCCCCCCCCCCceEEeccccccCCCC
Q 017625 239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF-------------PGSY-KYMMRGFTSFPNLFMAGDWITTRHGS 304 (368)
Q Consensus 239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~-------------pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~ 304 (368)
.+.+++.+++.+|++++ .++...+. +|.++..++ +... ..++..+++++||||||+++++|
T Consensus 397 ~~~il~~le~~~p~l~~-~i~~~~v~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--- 471 (492)
T TIGR02733 397 TQTIIERLGHYFDLLEE-NWVHVELA-TPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--- 471 (492)
T ss_pred HHHHHHHHHHHCCCccc-cEEEEEcc-CCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC---
Confidence 88999999999999986 56655443 444433221 1110 12334468999999999999765
Q ss_pred ccchHHhHHHHHHHHHHHHH
Q 017625 305 WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 305 ~~~egA~~Sg~~aA~~Il~~ 324 (368)
+++.|++.||+.||+.|++.
T Consensus 472 ~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 472 EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CcHHHHHHHHHHHHHHHhhc
Confidence 35788999999999999864
No 14
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.90 E-value=2e-22 Score=191.16 Aligned_cols=293 Identities=17% Similarity=0.204 Sum_probs=206.8
Q ss_pred hhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH-------h---hc--CC----Ccc
Q 017625 13 AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-------L---AH--QK----NFD 76 (368)
Q Consensus 13 ~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-------~---~~--~~----~~~ 76 (368)
.+..-++.|+++|+++ ++++++++++++|++.++|+.+++++|+......+...- . .. +. ...
T Consensus 128 ~~~~~~d~sv~~f~r~-~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~ 206 (444)
T COG1232 128 SWEPKQDISVGEFIRR-RFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEK 206 (444)
T ss_pred CCCCCCCcCHHHHHHH-HHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccc
Confidence 4567799999999998 799999999999999999999999999984433322210 0 10 00 124
Q ss_pred eeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccC
Q 017625 77 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCN 156 (368)
Q Consensus 77 ~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~ 156 (368)
+.+++||+ ++|+++|++.++.+ |+++++|++|..+.. + .+.+..+|++++||.||+|+|++.+.+++++..
T Consensus 207 ~~~~~gG~-~~l~~al~~~l~~~---i~~~~~V~~i~~~~~-~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~--- 277 (444)
T COG1232 207 FGYLRGGL-QSLIEALAEKLEAK---IRTGTEVTKIDKKGA-G-KTIVDVGGEKITADGVISTAPLPELARLLGDEA--- 277 (444)
T ss_pred ccccCccH-HHHHHHHHHHhhhc---eeecceeeEEEEcCC-c-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCcc---
Confidence 56779997 57999999999865 999999999999863 3 455566688999999999999999999998731
Q ss_pred chhHHhhhccCccceEEEEEEecCCCCCCCCCce-eecCCCCc-cceeeeccccccccCCCCCeEEEEEee-cCC-CCCC
Q 017625 157 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA-CSGFGDSL-AWTFFDLNKIYDEHKDDSATVIQADFY-HAN-ELMP 232 (368)
Q Consensus 157 ~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~-~~~~~~~~-~~~~~d~s~~~~~~~~~~~~v~~~~~~-~~~-~~~~ 232 (368)
......++.+.+.+++.+.++++.....+.+. ++..+... ...+.-+++..|...+.+.+++.+.++ ..+ ....
T Consensus 278 --~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~ 355 (444)
T COG1232 278 --VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVST 355 (444)
T ss_pred --hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhc
Confidence 22455777887888888888876221112221 11122111 111222344433333235666665554 222 2356
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCC----CCCCCCCceEEeccccccCCCCccch
Q 017625 233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDWITTRHGSWSQE 308 (368)
Q Consensus 233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p----~~~~~~~~L~laGd~~~~~~~~~~~e 308 (368)
++++|+++.+++.|.++++-..+ .+...+.+|++++|.|.+|+...+. ...+-.+|++.+|.|... + ++.
T Consensus 356 ~~dee~~~~~l~~L~~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g-~---g~~ 429 (444)
T COG1232 356 MSDEELVAAVLDDLKKLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG-V---GLP 429 (444)
T ss_pred cCHHHHHHHHHHHHHHHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC-C---Cch
Confidence 78999999999999999976654 3367788999999999999765322 222234899999988852 2 678
Q ss_pred HHhHHHHHHHHHHHH
Q 017625 309 RSYVTGLEAANRVVD 323 (368)
Q Consensus 309 gA~~Sg~~aA~~Il~ 323 (368)
+++.+|..||++|++
T Consensus 430 d~I~~g~~aa~~l~~ 444 (444)
T COG1232 430 DCIAAGKEAAEQLLS 444 (444)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999863
No 15
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=1.3e-21 Score=190.27 Aligned_cols=281 Identities=17% Similarity=0.110 Sum_probs=183.1
Q ss_pred hccCccHHHHHHHcC----------CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcc
Q 017625 16 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 85 (368)
Q Consensus 16 ~ld~~S~~d~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~ 85 (368)
..+++|+.+|+++.. +.+++++.++.+ +.+.++.+++++|+..+.. ...+ .+. ..+..+|+
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~~~--~g~--~~~~~~G~- 200 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EELL--EGG--HGLMVRGY- 200 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---cccc--CCC--ceeecCCH-
Confidence 468899999876531 344445555566 4556788999998864211 0000 111 12456785
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh-hh-hccccCchhHHh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL-IK-NSILCNREEFLK 162 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l-l~-~~~l~~~~~~~~ 162 (368)
+.|+++|++ +.+|+++++|++|..++ ++++ |++. |+++.||+||+|+|+..+++. +. .+.++ ....+.
T Consensus 201 ~~l~~~l~~-----~~~i~~~~~V~~i~~~~--~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp-~~~~~a 271 (435)
T PLN02268 201 DPVINTLAK-----GLDIRLNHRVTKIVRRY--NGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELP-EWKEEA 271 (435)
T ss_pred HHHHHHHhc-----cCceeCCCeeEEEEEcC--CcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCC-HHHHHH
Confidence 578888864 56899999999999877 4454 5554 668999999999999999753 32 23342 344677
Q ss_pred hhccCccceEEEEEEecCCCCCCCCCceeecCCC--CccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHH
Q 017625 163 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQV 238 (368)
Q Consensus 163 i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~ 238 (368)
++++.+.+..++.+.|++++|.... +++... ......++.. .. .++..++..... .+..+.+++++++
T Consensus 272 i~~~~~g~~~Kv~l~f~~~fw~~~~---~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e~ 343 (435)
T PLN02268 272 ISDLGVGIENKIALHFDSVFWPNVE---FLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEAA 343 (435)
T ss_pred HHhCCccceeEEEEEeCCCCCCCCc---eeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHHH
Confidence 8888888899999999999884322 222211 1111112211 11 123344433222 2234667899999
Q ss_pred HHHHHHHHhhhccCCCCCceeeeEEeecCCCcc------ccCCCCc-CCCCCCCCCCCceEEeccccccCCCCccchHHh
Q 017625 239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLT------HFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSY 311 (368)
Q Consensus 239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~------~~~pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~ 311 (368)
++.++++|.++||... +++...+.+|....+ .+.||.. ...+....|+++|||||++++..++ ++||||+
T Consensus 344 ~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~ 420 (435)
T PLN02268 344 ANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAY 420 (435)
T ss_pred HHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHH
Confidence 9999999999998643 456666777854321 2234432 1222334678899999999987777 7999999
Q ss_pred HHHHHHHHHHHHHh
Q 017625 312 VTGLEAANRVVDYL 325 (368)
Q Consensus 312 ~Sg~~aA~~Il~~~ 325 (368)
.||++||++|++.+
T Consensus 421 ~sG~raA~~v~~~l 434 (435)
T PLN02268 421 STGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999764
No 16
>PLN02529 lysine-specific histone demethylase 1
Probab=99.89 E-value=1.1e-20 Score=190.32 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=179.6
Q ss_pred hccCccHHHHHHHcC------CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhh
Q 017625 16 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 89 (368)
Q Consensus 16 ~ld~~S~~d~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~ 89 (368)
.++++|+.+|+++.. .++.. +.+++..+....+..+..++...+........ ...+.......||+ .+|+
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~--~e~~G~~~~i~GG~-~~Li 360 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDDP--YEMGGDHCFLAGGN-WRLI 360 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhccc--cccCCceEEECCcH-HHHH
Confidence 467899999998653 33432 34555444333333344443322222211110 00111223457896 5799
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH--hhhhccccCchhHHhhhccC
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA 167 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~~~~~~i~~l~ 167 (368)
++|++ +..|++|++|++|..++ +.|+ |.+++++++||+||+|+|+.++++ +...+.++ ....++|.++.
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~~--dGVt-V~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~ 431 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYGN--DGVE-VIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLG 431 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEcC--CeEE-EEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCC
Confidence 99875 34699999999999987 4454 666677899999999999999984 33333443 45578899999
Q ss_pred ccceEEEEEEecCCCCCCCCCceeecCC----CC-cccee-eeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHH
Q 017625 168 SIDVVSVKLWFDKKVTVPNVSNACSGFG----DS-LAWTF-FDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVV 239 (368)
Q Consensus 168 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~----~~-~~~~~-~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~ 239 (368)
+.++.++.+.|++++|..... +++.. .. ..+.. ++.. . . +++.++..... .+..+..+++++++
T Consensus 432 yG~v~KV~L~F~~~FW~~~~~--~fG~l~~~~~~~g~~~~~~~~~---~--~-~ggpvLvafv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEELD--TFGCLNESSNKRGEFFLFYGYH---T--V-SGGPALVALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CceeEEEEEEeCCccccCCCC--ceEEEeccCCCCceEEEEecCC---C--C-CCCCEEEEEECchhhHHHhcCCHHHHH
Confidence 999999999999998844211 11211 01 11111 1111 0 1 12334333222 23346678899999
Q ss_pred HHHHHHHhhhccC--CCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCC-CCceEEeccccccCCCCccchH
Q 017625 240 AKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWSQER 309 (368)
Q Consensus 240 ~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~------~~~pg~~~-~~p~~~~~-~~~L~laGd~~~~~~~~~~~eg 309 (368)
+.+++.|.++|+. .....++...+.+|..+.+ ...|+... .......+ .++|||||++++..|+ ++|||
T Consensus 504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gtVeG 582 (738)
T PLN02529 504 HRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-ATMHG 582 (738)
T ss_pred HHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eEeHH
Confidence 9999999999963 2212455666677754422 11222211 01111233 4789999999998888 79999
Q ss_pred HhHHHHHHHHHHHHHhCC
Q 017625 310 SYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 310 A~~Sg~~aA~~Il~~~~~ 327 (368)
|+.||++||++|++.++.
T Consensus 583 Ai~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 583 AFLSGLREASRILHVARS 600 (738)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998864
No 17
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.89 E-value=5.8e-21 Score=188.94 Aligned_cols=295 Identities=11% Similarity=-0.000 Sum_probs=186.2
Q ss_pred hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHH
Q 017625 16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 95 (368)
Q Consensus 16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~ 95 (368)
.++..|+.+|++++..++ .++.++.. ....++.+|++.++...+..+..+ .....+++||+ ..++++|.+.
T Consensus 158 ~~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~-~~l~~al~~~ 228 (502)
T TIGR02734 158 LLAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER------EWGVWFPRGGT-GALVAAMAKL 228 (502)
T ss_pred ccCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh------hceEEEcCCCH-HHHHHHHHHH
Confidence 456899999999864445 45566652 334567788888875433222111 12335788996 6899999999
Q ss_pred HHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhccccCchhHHhhhccCc-cceE
Q 017625 96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVV 172 (368)
Q Consensus 96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~l~~~~~~~~i~~l~~-~~~~ 172 (368)
++++|++|+++++|++|..++ +++++|++. |++++||.||+|+++..+. .|++....+ ....+.++.+++ ...+
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~ 305 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLF 305 (502)
T ss_pred HHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeee
Confidence 999999999999999999876 677788876 6689999999999997776 455543221 122344455554 3567
Q ss_pred EEEEEec---CCCCCCC-CCceeecCCC--------------Cccceeeec-cccccccCCCCCeEEEEEee-cC-----
Q 017625 173 SVKLWFD---KKVTVPN-VSNACSGFGD--------------SLAWTFFDL-NKIYDEHKDDSATVIQADFY-HA----- 227 (368)
Q Consensus 173 ~v~l~~~---~~~~~~~-~~~~~~~~~~--------------~~~~~~~d~-s~~~~~~~~~~~~v~~~~~~-~~----- 227 (368)
++++.++ +++. .. .++.++..+. .....++.. +...+...+++.+++.+... +.
T Consensus 306 ~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~ 384 (502)
T TIGR02734 306 VLYFGLLGVDGHWP-QLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTAD 384 (502)
T ss_pred EEEEeeccccCcCC-CcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCC
Confidence 7888887 3332 12 2233321110 001111211 22223344355555433222 21
Q ss_pred CCCCCCCHHHHHHHHHHHHhhh-ccCCCCCceeeeEEeecCCCcccc-----------CC--C-CcCCCCC-CCCCCCce
Q 017625 228 NELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIRRFPKSLTHF-----------FP--G-SYKYMMR-GFTSFPNL 291 (368)
Q Consensus 228 ~~~~~~~~~e~~~~~~~~l~~~-~p~~~~~~i~~~~~~~~~~~~~~~-----------~p--g-~~~~~p~-~~~~~~~L 291 (368)
..|.+ .++++.+.+++.+++. +|++++ .|+...+. +|.++..+ .+ . ....||. ..++++||
T Consensus 385 ~~~~~-~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~-TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gL 461 (502)
T TIGR02734 385 VDWSV-EGPRYRDRILAYLEERAIPGLRD-RIVVERTF-TPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNL 461 (502)
T ss_pred CCcHH-HHHHHHHHHHHHHHHhcCCChhH-heEEEEEc-CHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCE
Confidence 12433 3677889999999998 999986 56655443 33322221 11 1 1123553 35789999
Q ss_pred EEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCC
Q 017625 292 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 329 (368)
Q Consensus 292 ~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~ 329 (368)
|+||+++++| +++.+|+.||+.||+.|+++.+.++
T Consensus 462 yl~G~~~~pG---~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 462 YLVGAGTHPG---AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred EEeCCCCCCC---CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999764 3678899999999999999987543
No 18
>PLN03000 amine oxidase
Probab=99.87 E-value=1.7e-20 Score=189.62 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=171.5
Q ss_pred eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH--HhhhhccccC
Q 017625 79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSILCN 156 (368)
Q Consensus 79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~--~ll~~~~l~~ 156 (368)
...||+ ..|+++|++.+ .|+++++|++|..++ +.|. |++++++++||+||+|+|+.+++ .+...+.++
T Consensus 375 ~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~--dgV~-V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP- 444 (881)
T PLN03000 375 FLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGS--NGVK-VIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP- 444 (881)
T ss_pred EeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECC--CeEE-EEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC-
Confidence 457996 57999998766 399999999999887 4454 66666789999999999999998 344444443
Q ss_pred chhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCC---C---CccceeeeccccccccCCCCCeEEEEEee--cCC
Q 017625 157 REEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---D---SLAWTFFDLNKIYDEHKDDSATVIQADFY--HAN 228 (368)
Q Consensus 157 ~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~ 228 (368)
....++|+++.+....++.+.|++++|.... . ++++. . ...+.+++.+ + ..++.++..... .+.
T Consensus 445 ~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~-~-~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~A~ 516 (881)
T PLN03000 445 QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL-D-TFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEAAH 516 (881)
T ss_pred HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCchhH
Confidence 4556889999999999999999999885421 1 22211 0 1111122211 1 023344433222 234
Q ss_pred CCCCCCHHHHHHHHHHHHhhhccC--CCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCCC--CceEEeccc
Q 017625 229 ELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSF--PNLFMAGDW 297 (368)
Q Consensus 229 ~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~------~~~pg~~~-~~p~~~~~~--~~L~laGd~ 297 (368)
.+..++++++++.+++.|+++|+. ..-.+++...+.+|..+.+ .+.||... .......|+ ++|||||++
T Consensus 517 ~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEa 596 (881)
T PLN03000 517 KFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEA 596 (881)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehH
Confidence 567789999999999999999963 2212456677778855422 22233221 111122353 589999999
Q ss_pred cccCCCCccchHHhHHHHHHHHHHHHHhCC-CCccccccCCCCchhHHHHHHHHHHhhhhhc
Q 017625 298 ITTRHGSWSQERSYVTGLEAANRVVDYLGD-GSFSKIIPVEEDEPHIEALRTVNRRFNEIRA 358 (368)
Q Consensus 298 ~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (368)
++..|+ ++|+||+.||++||++|+..+.. ..+.++.-....+++.. .-.|++-||+|--
T Consensus 597 Ts~~~~-GTVhGAieSGlRAA~eIl~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 656 (881)
T PLN03000 597 TTRRYP-ATMHGAFVTGLREAANMAQSAKARGIRKRIDRNPSKNAHSC-AILLADLFRDPDL 656 (881)
T ss_pred HhCCCC-eeHHHHHHHHHHHHHHHHHHhhhccCCcccccCccccccch-hHHHHHHhhCcCc
Confidence 987788 79999999999999999999975 44433332222233322 2338888998743
No 19
>PLN02676 polyamine oxidase
Probab=99.87 E-value=5.5e-21 Score=187.11 Aligned_cols=263 Identities=12% Similarity=0.134 Sum_probs=170.0
Q ss_pred hcCCchhhhHHHHHHHHHHHHhhcCCCcceeee-cCCcchhhhHHHHHHHHHc------CCEEeccceeeeEEecCCCce
Q 017625 48 LFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCC 120 (368)
Q Consensus 48 ~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~-~GG~~~~L~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~g~ 120 (368)
++.+++++|+..++.. ..+ ...++....+. +||+ ++|++.|++.+.++ +.+|++|++|++|..++ +.
T Consensus 189 ~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~-~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~g 262 (487)
T PLN02676 189 FAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGY-ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NG 262 (487)
T ss_pred eccCccccchhhcCcc-ccc--ccCCCceEEeecCCCH-HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--Cc
Confidence 5667788887654321 111 11112222222 5785 67999999877543 25799999999999876 44
Q ss_pred EEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCC
Q 017625 121 ISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS 197 (368)
Q Consensus 121 v~~v~~~-g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~ 197 (368)
|+ |.+. |++++||+||+|+|+..+++ +...+.++ ....+.++.+.+....++.+.|++++|...+...++.....
T Consensus 263 V~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~ 340 (487)
T PLN02676 263 VT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHE 340 (487)
T ss_pred EE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeecc
Confidence 64 6665 66899999999999999985 44444553 44567888889888999999999999854221111111100
Q ss_pred -----ccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC-
Q 017625 198 -----LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS- 269 (368)
Q Consensus 198 -----~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~- 269 (368)
..|..++ ... ++..++...+.. +..+..+++++..+.+++.|.++||.... +++......|..+
T Consensus 341 ~~~~~~~~~~~~-----~~~--~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~-~p~~~~~~~W~~dp 412 (487)
T PLN02676 341 RRGYYPFWQHLE-----NEY--PGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIP-EATDILVPRWWSNR 412 (487)
T ss_pred ccccchhhhhcc-----cCC--CCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC-CcceEEecccCCCC
Confidence 0111111 001 233344332221 23456688999999999999999974222 4555556667433
Q ss_pred -----ccccCCCCcC-CCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 270 -----LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 270 -----~~~~~pg~~~-~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
+..+.||... ..+....|+++|||||++++..++ ++||||+.||++||++|++.++.
T Consensus 413 ~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~-g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 413 FFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYN-GYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccc-cchHHHHHHHHHHHHHHHHHhcc
Confidence 2223344322 122234678999999999987777 79999999999999999999875
No 20
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.87 E-value=6.7e-20 Score=180.75 Aligned_cols=295 Identities=16% Similarity=0.160 Sum_probs=183.6
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHH
Q 017625 17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 96 (368)
Q Consensus 17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l 96 (368)
+-..|+.++++++..++.+ +.++...+......++.+.++......+... ......+++||+ ..|+++|++.+
T Consensus 167 ~~~~s~~~~~~~~~~~~~l-~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~-~~l~~~L~~~~ 239 (493)
T TIGR02730 167 YLPQNAGDIARRYIRDPGL-LKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGV-GQIAESLVKGL 239 (493)
T ss_pred HhhccHHHHHHHhcCCHHH-HHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChH-HHHHHHHHHHH
Confidence 3458999999987666664 4566543322222334677665544333211 112346789996 57999999999
Q ss_pred HHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-HhhhhccccCchhHHhhhccCcc-ceEE
Q 017625 97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLASI-DVVS 173 (368)
Q Consensus 97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~l~~~~~~~~i~~l~~~-~~~~ 173 (368)
+++|++|+++++|++|..++ +++.+|+++ |++++||.||+|++++.+. +|++...++ ......++.++.. ..++
T Consensus 240 ~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~ 316 (493)
T TIGR02730 240 EKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLS 316 (493)
T ss_pred HHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEE
Confidence 99999999999999999876 678889886 6689999999999887665 677654332 2233344455543 5778
Q ss_pred EEEEecCCCCCCC--CCceeec-CC---CCccceeeec-cccccccCCCCCeEEEEEee-cCCCCCC-------CCHHHH
Q 017625 174 VKLWFDKKVTVPN--VSNACSG-FG---DSLAWTFFDL-NKIYDEHKDDSATVIQADFY-HANELMP-------LKDDQV 238 (368)
Q Consensus 174 v~l~~~~~~~~~~--~~~~~~~-~~---~~~~~~~~d~-s~~~~~~~~~~~~v~~~~~~-~~~~~~~-------~~~~e~ 238 (368)
+++.++++..+.. .++.++. +. ......+... +...+...+++.+++.+... ....|.+ ..++++
T Consensus 317 ~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~ 396 (493)
T TIGR02730 317 LHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEAD 396 (493)
T ss_pred EEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHH
Confidence 8999987542111 1222211 10 0111111221 22223344345565433221 1122321 135668
Q ss_pred HHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC--C-CCc---C-------CC-CCCCCCCCceEEeccccccCCCC
Q 017625 239 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--P-GSY---K-------YM-MRGFTSFPNLFMAGDWITTRHGS 304 (368)
Q Consensus 239 ~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~--p-g~~---~-------~~-p~~~~~~~~L~laGd~~~~~~~~ 304 (368)
.+.+++.+++++|++++ .|+...+. +|.++..+. + |.+ . .+ |..+|+++|||+||+++++|
T Consensus 397 ~~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG--- 471 (493)
T TIGR02730 397 AERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG--- 471 (493)
T ss_pred HHHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC---
Confidence 89999999999999986 56554443 444432221 1 111 0 11 34568999999999999764
Q ss_pred ccchHHhHHHHHHHHHHHHHhC
Q 017625 305 WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 305 ~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
+++.+|+.||+.||+.|+++++
T Consensus 472 ~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 472 QGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CCHHHHHHHHHHHHHHHHhhcC
Confidence 4678999999999999998754
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.86 E-value=9.3e-20 Score=184.34 Aligned_cols=259 Identities=14% Similarity=0.126 Sum_probs=167.9
Q ss_pred eeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH--hhhhcccc
Q 017625 78 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILC 155 (368)
Q Consensus 78 ~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~--ll~~~~l~ 155 (368)
....||+ .+|+++|++.+ .|++|++|++|..+++ | |. |..+|++++||+||+|+|+.++++ +...+.++
T Consensus 430 ~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~d-g-V~-V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP 500 (808)
T PLN02328 430 CFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVD-G-VI-VYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELP 500 (808)
T ss_pred EEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCC-e-EE-EEeCCeEEEcCEEEECCCHHHHhhcccccCCCCC
Confidence 3457996 57999998765 3999999999999773 4 53 556688999999999999999984 32333342
Q ss_pred CchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecC---CC-Ccc-ce-eeeccccccccCCCCCeEEEEEee--cC
Q 017625 156 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GD-SLA-WT-FFDLNKIYDEHKDDSATVIQADFY--HA 227 (368)
Q Consensus 156 ~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~-~~~-~~-~~d~s~~~~~~~~~~~~v~~~~~~--~~ 227 (368)
....++|.++.+.++.++.+.|++++|.... . .++. +. ..+ +. +++.+. . .++.++..... .+
T Consensus 501 -~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~-d-~fG~l~~d~s~rG~~~lf~s~s~-----~-~G~~vLvafv~G~~A 571 (808)
T PLN02328 501 -QRKKDAIQRLGYGLLNKVALLFPYNFWGGEI-D-TFGHLTEDPSMRGEFFLFYSYSS-----V-SGGPLLIALVAGDAA 571 (808)
T ss_pred -HHHHHHHHcCCCcceEEEEEEeCCccccCCC-C-ceEEEeecCCCCceEEEEecCCC-----C-CCCcEEEEEecChhh
Confidence 4556889999999999999999999885321 1 1111 11 101 11 122111 0 23444433322 22
Q ss_pred CCCCCCCHHHHHHHHHHHHhhhccC--CCCCceeeeEEeecCCCccc------cCCCCcC-CCCCCCCC--CCceEEecc
Q 017625 228 NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLTH------FFPGSYK-YMMRGFTS--FPNLFMAGD 296 (368)
Q Consensus 228 ~~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~i~~~~~~~~~~~~~~------~~pg~~~-~~p~~~~~--~~~L~laGd 296 (368)
..+..++++++++.+++.|.++|+. .....++...+.+|..+.+. +.+|... ..+....+ .++|||||+
T Consensus 572 ~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGE 651 (808)
T PLN02328 572 VKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGE 651 (808)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEh
Confidence 3456678999999999999999963 21124666777788655322 2233321 11112234 358999999
Q ss_pred ccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHHHHHHHHHhhhhhc
Q 017625 297 WITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEALRTVNRRFNEIRA 358 (368)
Q Consensus 297 ~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (368)
+++..++ ++|+||+.||+++|++|++.++. +....+..- ...-....+|.+-||+|--
T Consensus 652 aTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 709 (808)
T PLN02328 652 ATNKQYP-ATMHGAFLSGMREAANILRVARR--RSLCIDDKV-NNDEEEDDCLDQLFDTPDL 709 (808)
T ss_pred hHhCCCC-eEhHHHHHHHHHHHHHHHHHHhh--cccCCcccc-cccchhhhHHHHHhcCcCc
Confidence 9987777 79999999999999999999874 211111111 1111245668999998743
No 22
>PLN02568 polyamine oxidase
Probab=99.86 E-value=3.6e-20 Score=182.72 Aligned_cols=296 Identities=15% Similarity=0.117 Sum_probs=187.2
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH-----------h--hcCC-----Ccceeee
Q 017625 19 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII-----------L--AHQK-----NFDLVWC 80 (368)
Q Consensus 19 ~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~-----------~--~~~~-----~~~~~~~ 80 (368)
+.|+.+|+++ ++++ ..+.+.+|+..+.+...+++.+...++..+..+. + .... .......
T Consensus 160 ~~Sl~~fl~~-~l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRR-GLDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHH-HHHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 3599999996 4544 5566777877888888888777766555443321 0 0000 0112345
Q ss_pred cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHH------hhhhcc
Q 017625 81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE------LIKNSI 153 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~------ll~~~~ 153 (368)
.||+ +.|+++|++.+. +.+|++|++|++|..++ +.|+ |.+. |+++.||+||+|+|+.++++ +...+.
T Consensus 238 ~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 7895 579999998875 46899999999999887 4454 5554 67899999999999999985 233334
Q ss_pred ccCchhHHhhhccCccceEEEEEEecCCCCCCC------CCceee-cCCC------CccceeeeccccccccCCCCCeEE
Q 017625 154 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN------VSNACS-GFGD------SLAWTFFDLNKIYDEHKDDSATVI 220 (368)
Q Consensus 154 l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~------~~~~~~-~~~~------~~~~~~~d~s~~~~~~~~~~~~v~ 220 (368)
++ ..+.++|+.+.+....++.+.|++++|... +...+. .... ...+.+-......+ .. .+..++
T Consensus 312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~vL 388 (539)
T PLN02568 312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-IH-KNSSVL 388 (539)
T ss_pred CC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-cC-CCCCEE
Confidence 43 445788899999999999999999987421 100010 0000 00000000000111 01 133444
Q ss_pred EEEeec--CCCCCCCCHHHHHHHHHHHHhhhccCCCC---------------------CceeeeEEeecCCC------cc
Q 017625 221 QADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFST---------------------ATVMDHKIRRFPKS------LT 271 (368)
Q Consensus 221 ~~~~~~--~~~~~~~~~~e~~~~~~~~l~~~~p~~~~---------------------~~i~~~~~~~~~~~------~~ 271 (368)
...... +..+..++++++++.+++.|.++|+.... .+++...+.+|..+ +.
T Consensus 389 ~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs 468 (539)
T PLN02568 389 LSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYS 468 (539)
T ss_pred EEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccC
Confidence 433332 23456788999999999999999973210 24566666677433 22
Q ss_pred ccCCCCcCC-CCCCCCCC-------------CceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 272 HFFPGSYKY-MMRGFTSF-------------PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 272 ~~~pg~~~~-~p~~~~~~-------------~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
...||.... +.....|+ ++|||||++++..|+ ++|+||+.||+++|++|++.++
T Consensus 469 ~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 469 YVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 223443221 11112233 379999999998888 7999999999999999998865
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.86 E-value=5.4e-21 Score=184.84 Aligned_cols=297 Identities=20% Similarity=0.152 Sum_probs=174.8
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhh----cCCCcceeeecCCcchhhhH
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFE 90 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~----~~~~~~~~~~~GG~~~~L~~ 90 (368)
...+.+++.+|+....+.+.....++.++.....+..+...++......+...... ...........|+ +..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~ 213 (450)
T PF01593_consen 138 LEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGG----LSL 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTT----THH
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccc----hhH
Confidence 44456677777766555554444345555555555555556655322222211110 0011111222344 334
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccCccc
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASID 170 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~~~~ 170 (368)
.+...++..|++|++|++|++|..++ ++|+.+..+|++++||+||+|+|+..+.++.-.+.++ ....+.++.+.+.+
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~-~~~~~a~~~~~~~~ 290 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP-EDKRRAIENLPYSS 290 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH-HHHHHHHHTEEEEE
T ss_pred HHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhccccc-ccccccccccccCc
Confidence 45555666688999999999999998 6776444557799999999999999999622221221 23456777888888
Q ss_pred eEEEEEEecCCCCCCCC-CceeecCCC-CccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCHHHHHHHHHHHH
Q 017625 171 VVSVKLWFDKKVTVPNV-SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYL 246 (368)
Q Consensus 171 ~~~v~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~e~~~~~~~~l 246 (368)
..++++.++++++.+.. ...+...+. .....+.+.+...+. +++.++..+... ...+.+++++++++.++++|
T Consensus 291 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L 367 (450)
T PF01593_consen 291 VSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDL 367 (450)
T ss_dssp EEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHHHh
Confidence 88999999999875431 111111111 111112222211111 234444333321 13467789999999999999
Q ss_pred hhhccCCCCCceeeeEEeecCCC-cccc-----CCCCc-CCCCCCCCCC-CceEEeccccccCCCCccchHHhHHHHHHH
Q 017625 247 SKCIKDFSTATVMDHKIRRFPKS-LTHF-----FPGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGLEAA 318 (368)
Q Consensus 247 ~~~~p~~~~~~i~~~~~~~~~~~-~~~~-----~pg~~-~~~p~~~~~~-~~L~laGd~~~~~~~~~~~egA~~Sg~~aA 318 (368)
++++|.....++....+.+|... ++.. .++.. ..++...+++ +||||||||++++++ ++++||+.||.+||
T Consensus 368 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~~aA 446 (450)
T PF01593_consen 368 RKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGRRAA 446 (450)
T ss_dssp HHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHHHHH
Confidence 99999522123445555667552 2221 12221 1233445677 699999999998777 79999999999999
Q ss_pred HHHH
Q 017625 319 NRVV 322 (368)
Q Consensus 319 ~~Il 322 (368)
++|+
T Consensus 447 ~~il 450 (450)
T PF01593_consen 447 EEIL 450 (450)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 24
>PLN02976 amine oxidase
Probab=99.83 E-value=3.2e-19 Score=185.19 Aligned_cols=259 Identities=17% Similarity=0.144 Sum_probs=166.3
Q ss_pred cCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecC--------CCce
Q 017625 49 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC 120 (368)
Q Consensus 49 ~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~--------~~g~ 120 (368)
+.+++++|+..+. .......-++. .....||+ .+|+++|++.+ .|++|++|++|...+ +++.
T Consensus 904 aa~L~eVSl~~~~---qd~~y~~fgG~-~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG 973 (1713)
T PLN02976 904 AALLKEVSLPYWN---QDDVYGGFGGA-HCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK 973 (1713)
T ss_pred cCCHHHhhhhhhh---cccccccCCCc-eEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence 5677888875322 10000111111 22357896 57999998755 499999999999842 1133
Q ss_pred EEEEEEC-CeEEecCEEEEeeChhhHH--HhhhhccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC-
Q 017625 121 ISDVVCG-KETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD- 196 (368)
Q Consensus 121 v~~v~~~-g~~~~ad~VV~a~p~~~l~--~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~- 196 (368)
|. |.+. |++++||+||+|+|+.+|+ .+...+.|| ....++|..+.+....++.+.|++++|.... . +++...
T Consensus 974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~-d-~FG~s~e 1049 (1713)
T PLN02976 974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDDSV-D-YFGATAE 1049 (1713)
T ss_pred EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccCCC-C-ccccccc
Confidence 54 5554 6789999999999999997 344444553 3446778999999999999999999885421 1 222211
Q ss_pred -----CccceeeeccccccccCCCCCeEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCC
Q 017625 197 -----SLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 269 (368)
Q Consensus 197 -----~~~~~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~ 269 (368)
...+.+++.. ...+..++...+. .+..+..++++++++.+++.|.++||......++...+.+|...
T Consensus 1050 dtdlrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1050 ETDLRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred cCCCCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 0111111111 1112344433332 22345668899999999999999998532225667777778544
Q ss_pred cc------ccCCCCcC-CCCCCCCCCCc-eEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCC
Q 017625 270 LT------HFFPGSYK-YMMRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDG 328 (368)
Q Consensus 270 ~~------~~~pg~~~-~~p~~~~~~~~-L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~ 328 (368)
.+ ...||... .+.....|+.| |||||++++..|+ ++|+||+.||.+||++|+..+..+
T Consensus 1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G 1189 (1713)
T PLN02976 1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTG 1189 (1713)
T ss_pred CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHcc
Confidence 22 12234321 11122356666 9999999988888 799999999999999999999764
No 25
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.8e-17 Score=154.25 Aligned_cols=232 Identities=16% Similarity=0.140 Sum_probs=158.0
Q ss_pred cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChhhHHHhhhhccccCchh
Q 017625 81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREE 159 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~ 159 (368)
-||| ..|.+++++.+ |..|+++++|++|..++ .+|+ |++.+ +++.+|+||||+|+.++.+|--.+.+ ++++
T Consensus 205 ~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~--~gV~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~~ 276 (450)
T COG1231 205 LGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDG--DGVT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAEY 276 (450)
T ss_pred CccH-HHHHHHHHHHh---hceEEecCceeeEEEcC--CeEE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHHH
Confidence 3896 67999988655 56899999999999887 4475 77776 89999999999999999987655433 3566
Q ss_pred HHhhhccCccceEEEEEEecCCCCCCCC-CceeecCCCCccceeeeccccccccCCCCCeEEEEEee---cCCCCCCCCH
Q 017625 160 FLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY---HANELMPLKD 235 (368)
Q Consensus 160 ~~~i~~l~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~ 235 (368)
.++++.+.|.+..++.+.|++++|.+.. .+...-.|.......++ ++. +. .+..|+...+. .+..|..+++
T Consensus 277 ~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~-s~~---~~-~G~gVl~g~~~~g~~A~~~~~~~~ 351 (450)
T COG1231 277 KQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYP-SAP---FA-DGPGVLLGSYAFGDDALVIDALPE 351 (450)
T ss_pred HHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecC-ccc---cC-CCceEEEeeeeccccceeEecCCH
Confidence 7788888899999999999999996543 11111012221111122 211 11 23344433222 2345778999
Q ss_pred HHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCc------cccCCCCc-CCCCCCCCCCCceEEeccccccCCCCccch
Q 017625 236 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQE 308 (368)
Q Consensus 236 ~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~------~~~~pg~~-~~~p~~~~~~~~L~laGd~~~~~~~~~~~e 308 (368)
++.++.++..+.++||+...........++|.... ..+.||.. ...|....+.++++|||....+.++ +++|
T Consensus 352 ~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~e 430 (450)
T COG1231 352 AERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWLE 430 (450)
T ss_pred HHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-chhH
Confidence 99999999999999995432123332555564432 22334432 2334445688999999944444677 7999
Q ss_pred HHhHHHHHHHHHHHHHhC
Q 017625 309 RSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 309 gA~~Sg~~aA~~Il~~~~ 326 (368)
||+.||..||.+|...+.
T Consensus 431 GAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 431 GAIRSGQRAAAEIHALLS 448 (450)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988765
No 26
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.75 E-value=4.3e-16 Score=143.48 Aligned_cols=239 Identities=15% Similarity=0.129 Sum_probs=152.4
Q ss_pred ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH-Hhhhhcc
Q 017625 76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSI 153 (368)
Q Consensus 76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~-~ll~~~~ 153 (368)
.+.|+.|||+ .+.+++++.++++|++|.+++.|++|..++ |++.||++. |.++.+..||+++.++.+. +|++...
T Consensus 255 ~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~ 331 (561)
T KOG4254|consen 255 GWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEA 331 (561)
T ss_pred cccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCcc
Confidence 4568999986 699999999999999999999999999988 999999987 7789999999999998887 8999887
Q ss_pred ccCchhHHhhhccCcc-ceEE----EEEEecCCCCCCCCCceee---cCCC-----------------Cccceeee-ccc
Q 017625 154 LCNREEFLKVLNLASI-DVVS----VKLWFDKKVTVPNVSNACS---GFGD-----------------SLAWTFFD-LNK 207 (368)
Q Consensus 154 l~~~~~~~~i~~l~~~-~~~~----v~l~~~~~~~~~~~~~~~~---~~~~-----------------~~~~~~~d-~s~ 207 (368)
++ .++ .++++.+. ++.+ .++..+..-..+.|+..+. +.+. ...-..+. .|.
T Consensus 332 LP-eef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 332 LP-EEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred CC-chh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 74 333 44555442 2221 2233222111122322221 1110 00000111 133
Q ss_pred cccccCCCCCeEEEEEe-ecCCCC-------CCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccc-------
Q 017625 208 IYDEHKDDSATVIQADF-YHANEL-------MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTH------- 272 (368)
Q Consensus 208 ~~~~~~~~~~~v~~~~~-~~~~~~-------~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~------- 272 (368)
+.+.+.+++.+++.+.. |....| .+..+++..+++++.+++++|++++ +++.+.+. +|.+..+
T Consensus 409 lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvg-TP~t~qr~l~~~~G 486 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVG-TPPTHQRFLGRPGG 486 (561)
T ss_pred cCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecC-CCchhhHHhcCCCC
Confidence 34456667777765532 222223 3344677889999999999999987 56544443 3332221
Q ss_pred -cCCC---C---cCCCCCC-----CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 273 -FFPG---S---YKYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 273 -~~pg---~---~~~~p~~-----~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
+.++ . +-.+|.. .+|++|||+||+.+++|. ++.+|. |+++|...+.+.++
T Consensus 487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg---GV~a~a--G~~~A~~a~~~~~~ 548 (561)
T KOG4254|consen 487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG---GVMAAA--GRLAAHSAILDRKL 548 (561)
T ss_pred cccCcccccccccccCCccccccCCCCCCceEEecCCCCCCC---Cccccc--hhHHHHHHhhhhhh
Confidence 1121 1 1135544 689999999999997753 344443 89999888777663
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=2.5e-15 Score=146.16 Aligned_cols=229 Identities=22% Similarity=0.265 Sum_probs=156.4
Q ss_pred cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHH--hhhhccccCc
Q 017625 81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQE--LIKNSILCNR 157 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~--ll~~~~l~~~ 157 (368)
.+|+ +.++..++. |.+|+++.+|.+|.+.++ +.+ .++.. +..+.+|+||+|+|+.+++. +...+.+ +.
T Consensus 215 ~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L-p~ 285 (501)
T KOG0029|consen 215 KGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDD-GAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL-PR 285 (501)
T ss_pred hCCc-cHHHhhcCC-----CcceeeceeeEEEEEecC-Cce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC-cH
Confidence 5775 457777764 899999999999999875 542 34433 44599999999999999986 4444444 24
Q ss_pred hhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCC-C--ccc--eeeeccccccccCCCCCeEEEEEee--cCCCC
Q 017625 158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-S--LAW--TFFDLNKIYDEHKDDSATVIQADFY--HANEL 230 (368)
Q Consensus 158 ~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~--~~~--~~~d~s~~~~~~~~~~~~v~~~~~~--~~~~~ 230 (368)
...++|+.++.....++.+.|++.+|.+. .-+++... . ..+ .+++.. +. .+..++.+... .+..+
T Consensus 286 ~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~--~d~fg~~~~~~~~~~~~~f~~~~---~~---~~~~~l~~~~~~~~a~~~ 357 (501)
T KOG0029|consen 286 WKQEAIDRLGFGLVNKVILEFPRVFWDQD--IDFFGIVPETSVLRGLFTFYDCK---PV---AGHPVLMSVVVGEAAERV 357 (501)
T ss_pred HHHHHHHhcCCCceeEEEEEeccccCCCC--cCeEEEccccccccchhhhhhcC---cc---CCCCeEEEEehhhhhHHH
Confidence 55789999999999999999999999522 11333211 1 111 122222 11 12233322222 23456
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCc------cccCCCCcCC-CCCCCCCCCc-eEEeccccccCC
Q 017625 231 MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL------THFFPGSYKY-MMRGFTSFPN-LFMAGDWITTRH 302 (368)
Q Consensus 231 ~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~------~~~~pg~~~~-~p~~~~~~~~-L~laGd~~~~~~ 302 (368)
..++++++++.++..|+++|++.....+++..+.+|.... +...++.... ......++.| +||||+++...|
T Consensus 358 ~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~ 437 (501)
T KOG0029|consen 358 ETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKY 437 (501)
T ss_pred hcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccC
Confidence 7889999999999999999994333457777887784331 1122222111 1223467777 999999999888
Q ss_pred CCccchHHhHHHHHHHHHHHHHhCC
Q 017625 303 GSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 303 ~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
+ ++|+||+.||..+|..|+..+..
T Consensus 438 ~-~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 438 P-GTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred C-CchHHHHHhhHHHHHHHHHHHHh
Confidence 8 89999999999999999999883
No 28
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=1.1e-14 Score=142.87 Aligned_cols=288 Identities=13% Similarity=0.069 Sum_probs=155.1
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 94 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~ 94 (368)
..+...|+.+++... +..+..+.++........ .+|.+.+ +. ..++... . ....+.|++||| .+|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~-a~-~~~~~~~--~--~~~G~~~p~GG~-~al~~aL~~ 232 (487)
T COG1233 162 LGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPP-AL-YLLLSHL--G--LSGGVFYPRGGM-GALVDALAE 232 (487)
T ss_pred HHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchh-HH-HHHHHHh--c--ccCCeeeeeCCH-HHHHHHHHH
Confidence 345778889999886 766666666654322222 5566665 22 2222211 2 134567899997 579999999
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhccC-ccceE
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA-SIDVV 172 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l~-~~~~~ 172 (368)
.++++||+|+++++|++|.+++ |+.++++.. |+.+++|.||+++.+.....+.+.... . +...... ....+
T Consensus 233 ~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~al 305 (487)
T COG1233 233 LAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR----P-RYRGSYLKSLSAL 305 (487)
T ss_pred HHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh----h-ccccchhhhhHHH
Confidence 9999999999999999999988 665556665 458999999999999555555443210 0 0001111 11122
Q ss_pred EEEEEecCCCCCCCCCceeecCCCC----cc---------ceeee-ccccccccCCCCCeEEEEEee--cCCCCCCCCHH
Q 017625 173 SVKLWFDKKVTVPNVSNACSGFGDS----LA---------WTFFD-LNKIYDEHKDDSATVIQADFY--HANELMPLKDD 236 (368)
Q Consensus 173 ~v~l~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~d-~s~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~ 236 (368)
..++.++.........+.++..+.. .. +.+.. .+...+...+++++.+...+. +...+.+..++
T Consensus 306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~ 385 (487)
T COG1233 306 SLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKE 385 (487)
T ss_pred HhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHH
Confidence 2333333320001011111111100 00 11111 222223344344441111222 21122223345
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccC--------------CCCcCCCCCC-CCCCCceEEeccccccC
Q 017625 237 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF--------------PGSYKYMMRG-FTSFPNLFMAGDWITTR 301 (368)
Q Consensus 237 e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~--------------pg~~~~~p~~-~~~~~~L~laGd~~~~~ 301 (368)
++.+. +..+++.+|++++ .+++..+. ++..+..+. ......||.. .|+++|||+||+++++|
T Consensus 386 ~~~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG 462 (487)
T COG1233 386 SLADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPG 462 (487)
T ss_pred HHHHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCC
Confidence 55555 6689999999987 56655554 332221111 1122345544 48999999999999875
Q ss_pred CCCccchHHhHHHHHHHHHHHHH
Q 017625 302 HGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 302 ~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
- ++.++..++..++..+..+
T Consensus 463 ~---Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 463 G---GVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred C---CcchhhhhHHHHHhhhccc
Confidence 3 4555555555555544443
No 29
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.63 E-value=1.2e-14 Score=133.51 Aligned_cols=293 Identities=13% Similarity=0.120 Sum_probs=194.2
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHH---------------Hhhc--------
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI---------------ILAH-------- 71 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~---------------~~~~-------- 71 (368)
.+..++|+.+|++| ++++++.+++++|||.++|+++++++|+......+... +-+.
T Consensus 151 ~~~~dESV~sF~~R-rfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~ 229 (491)
T KOG1276|consen 151 DPSADESVESFARR-RFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETA 229 (491)
T ss_pred CCCccccHHHHHHH-hhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccch
Confidence 45678999999998 78999999999999999999999999997654433211 1000
Q ss_pred ------CCCcceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce-EEecCEEEEeeC
Q 017625 72 ------QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TYSAGAVVLAVG 141 (368)
Q Consensus 72 ------~~~~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~~ad~VV~a~p 141 (368)
.+.+.+.-.+||+ +.|.+++.+.|.+..+.|.++-++..+..... |+ |.+.+. +. .+..++++.|+|
T Consensus 230 ~~~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~-~~~tl~~~~~~~~~~~~~~~~t~~ 306 (491)
T KOG1276|consen 230 LSAQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRS-GN-WSLTLVDHSGTQRVVVSYDAATLP 306 (491)
T ss_pred hhhhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhccccccccccccc-CC-ceeEeEcCCCceeeeccccccccc
Confidence 1122222347896 78999999999999999999999999987654 54 344443 32 456677777999
Q ss_pred hhhHHHhhhhccccCchhHHhhhccCccceEEEEEEecCC-CCCCC-CCceeecCCC----CccceeeeccccccccCCC
Q 017625 142 ISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVPN-VSNACSGFGD----SLAWTFFDLNKIYDEHKDD 215 (368)
Q Consensus 142 ~~~l~~ll~~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~d~s~~~~~~~~~ 215 (368)
+..+.++++... ......+.++.|.+++.|.+.|+++ ...+. .+..+....+ ..-.++||.....++.+
T Consensus 307 ~~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~-- 381 (491)
T KOG1276|consen 307 AVKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSP-- 381 (491)
T ss_pred hHHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecccCCCCCC--
Confidence 999999988753 2334677888999999998888764 32222 3333322111 01123566432222221
Q ss_pred CCeEEEEEee---cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-----CCC
Q 017625 216 SATVIQADFY---HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-----FTS 287 (368)
Q Consensus 216 ~~~v~~~~~~---~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-----~~~ 287 (368)
...++...+. ........+.+|+++.+.++|.+++. ++. ++....++-|+..+|+|+.|+....-.. ..+
T Consensus 382 s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lg-i~~-~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~ 459 (491)
T KOG1276|consen 382 SPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLG-ISN-KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSP 459 (491)
T ss_pred CceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhC-CCC-CcccccceehhhcccceecchHHHHHHHHHHHHhCC
Confidence 2122211111 11112346789999999999999984 332 3444455569999999999976432111 123
Q ss_pred CCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017625 288 FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 322 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il 322 (368)
-.+|+++|.|... .++..++.||+.+|..++
T Consensus 460 g~~l~l~G~~y~G----v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 460 GLGLFLGGNHYGG----VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred CCceEeeccccCC----CChhHHHHhhHHHHHhhc
Confidence 3589999999963 356789999999887764
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.60 E-value=1.8e-15 Score=131.15 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=144.7
Q ss_pred CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhhHHHhhhhc--cccCc
Q 017625 82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQELIKNS--ILCNR 157 (368)
Q Consensus 82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~l~~ll~~~--~l~~~ 157 (368)
-||+ +|++.|+. ..+|+++++|++|...+ + .|.+.++ ++...||.||+|+|++++..|+... .+ +.
T Consensus 105 pgms-alak~LAt-----dL~V~~~~rVt~v~~~~--~-~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~-p~ 174 (331)
T COG3380 105 PGMS-ALAKFLAT-----DLTVVLETRVTEVARTD--N-DWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDL-PA 174 (331)
T ss_pred cchH-HHHHHHhc-----cchhhhhhhhhhheecC--C-eeEEEecCCCcccccceEEEecCCCcchhhcCcccccc-hH
Confidence 4654 56665543 45799999999999885 4 4778885 3578999999999999999888542 22 23
Q ss_pred hhHHhhhccCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeec--CCCCCCCCH
Q 017625 158 EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKD 235 (368)
Q Consensus 158 ~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~ 235 (368)
..++.+..+.|.|++.+.+.|..+...+.+. .+..+..+.|.-.|.++ +... +.+.++.+...+ ...+.+.++
T Consensus 175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK--~g~~-p~~~~~vvqasp~wSr~h~~~~~ 249 (331)
T COG3380 175 ALRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASK--KGHV-PDGEIWVVQASPDWSREHLDHPA 249 (331)
T ss_pred HHHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccC--CCCC-CcCceEEEEeCchHHHHhhcCCH
Confidence 4678888999999988888887766433332 22223455674334332 1111 233344344332 233456777
Q ss_pred HHHHHHHHHHHhhhcc-CCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHH
Q 017625 236 DQVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTG 314 (368)
Q Consensus 236 ~e~~~~~~~~l~~~~p-~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg 314 (368)
++.+..+......+++ .+. ++.....++|+++.+.-..+.. +.....-.+||+||||++. +-+|||+.||
T Consensus 250 e~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~~---~L~ad~~~~l~~cGDwc~G----grVEgA~LSG 320 (331)
T COG3380 250 EQVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAGP---PLDADRELPLYACGDWCAG----GRVEGAVLSG 320 (331)
T ss_pred HHHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccCC---ccccCCCCceeeecccccC----cchhHHHhcc
Confidence 7777666666666665 333 4555666789999875443321 1111344689999999974 5789999999
Q ss_pred HHHHHHHHHHh
Q 017625 315 LEAANRVVDYL 325 (368)
Q Consensus 315 ~~aA~~Il~~~ 325 (368)
..+|.+|++.+
T Consensus 321 lAaA~~i~~~L 331 (331)
T COG3380 321 LAAADHILNGL 331 (331)
T ss_pred HHHHHHHHhcC
Confidence 99999998753
No 31
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.55 E-value=1.6e-13 Score=128.08 Aligned_cols=237 Identities=17% Similarity=0.183 Sum_probs=148.1
Q ss_pred cCCcchhhhHHHHHHHHHc----C--CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh---hh
Q 017625 81 RGTLREKIFEPWMDSMRTR----G--CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL---IK 150 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~----G--~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l---l~ 150 (368)
.-|+ ..+.+.|++.+.+. | .+++++++|.+|..+++ ++|. |+|. |+.++||+||||++..++++- +.
T Consensus 219 ~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF 295 (498)
T KOG0685|consen 219 KKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQHHKLF 295 (498)
T ss_pred hhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhhhhhc
Confidence 4464 46888888765432 2 46778899999999865 7665 6665 889999999999999999862 23
Q ss_pred hccccCchhHHhhhccCccceEEEEEEecCCCCCCCCCcee--ecCCCC--------ccceeeeccccccccCCCCCeEE
Q 017625 151 NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNAC--SGFGDS--------LAWTFFDLNKIYDEHKDDSATVI 220 (368)
Q Consensus 151 ~~~l~~~~~~~~i~~l~~~~~~~v~l~~~~~~~~~~~~~~~--~~~~~~--------~~~~~~d~s~~~~~~~~~~~~v~ 220 (368)
.+++| ..+.++|+.+.+....+++|-|.+++|++. .+.+ .-.+.. ..| +-+.....+-.. ...++
T Consensus 296 ~P~LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~-~~~i~~lw~~e~l~e~r~~~~~w-~~~~~~f~~v~~--~~~vL 370 (498)
T KOG0685|consen 296 VPPLP-AEKQRAIERLGFGTVNKIFLEFEEPFWPSD-WNGIQLLWLDEDLEELRSTLDAW-EEDIMGFQPVSW--APNVL 370 (498)
T ss_pred CCCCC-HHHHHHHHhccCCccceEEEEccCCCCCCC-CceeEEEEecCcHHHHhhhhHHH-HhhceEEEEcCc--chhhh
Confidence 33453 567789999999999999999999988542 2211 111100 011 001111111000 11343
Q ss_pred EEEee--cCCCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEEeec------CCCccccCCCCcC------CCCCC--
Q 017625 221 QADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF------PKSLTHFFPGSYK------YMMRG-- 284 (368)
Q Consensus 221 ~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~------~~~~~~~~pg~~~------~~p~~-- 284 (368)
..+.. .+.-..+++++++.+.+...|++++++..-+++....-..| ++++....+|+.. ..|..
T Consensus 371 ~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~ 450 (498)
T KOG0685|consen 371 LGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLT 450 (498)
T ss_pred heeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCcc
Confidence 33222 22234678999999999999999997654223322222223 2222222223211 11221
Q ss_pred -CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 -FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 -~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.++-+.+.|||++++..+- .++.||+.||++.|++|+..+.
T Consensus 451 ~~~~~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 451 LVTGRPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred ccCCCceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHH
Confidence 2345689999999986555 6999999999999999999765
No 32
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.43 E-value=5.1e-11 Score=116.42 Aligned_cols=303 Identities=14% Similarity=0.107 Sum_probs=175.3
Q ss_pred hhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh---hcCCCcceeeecCCcchhhhH
Q 017625 14 WRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL---AHQKNFDLVWCRGTLREKIFE 90 (368)
Q Consensus 14 ~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~---~~~~~~~~~~~~GG~~~~L~~ 90 (368)
-++||+.|+.||+++..+.. ....+|.. .++..+..||.++...+++++. +......+.+.++...++|+.
T Consensus 157 e~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t-----~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~ 230 (576)
T PRK13977 157 EEKLDDKTIEDWFSPEFFET-NFWYYWRT-----MFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVL 230 (576)
T ss_pred HHHhCCcCHHHHHhhcCchh-HHHHHHHH-----HHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHH
Confidence 48899999999999866644 34444443 3566899999999999987731 222233444556667899999
Q ss_pred HHHHHHHHcCCEEeccceeeeEEec--CCCceEEEEEEC--Ce-----EEecCEEEEeeChhhHHHhhhhcccc------
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVCG--KE-----TYSAGAVVLAVGISTLQELIKNSILC------ 155 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~--~~~g~v~~v~~~--g~-----~~~ad~VV~a~p~~~l~~ll~~~~l~------ 155 (368)
+|.+.|+++|++|+++++|++|..+ ++.++|++|.+. |+ ....|.||+|.+.-+-..=+++..-+
T Consensus 231 PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~ 310 (576)
T PRK13977 231 PLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRE 310 (576)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCC
Confidence 9999999999999999999999985 222568888763 22 24789999998765432222211000
Q ss_pred -CchhH--Hhhh----ccCc----------cceEEEEEEecCC-C-------CCCCCCc------eeecCCCCccceeee
Q 017625 156 -NREEF--LKVL----NLAS----------IDVVSVKLWFDKK-V-------TVPNVSN------ACSGFGDSLAWTFFD 204 (368)
Q Consensus 156 -~~~~~--~~i~----~l~~----------~~~~~v~l~~~~~-~-------~~~~~~~------~~~~~~~~~~~~~~d 204 (368)
...|. +.+. .++. +.+.+..+-++.+ + ....|.. .+..+. ..+|. .+
T Consensus 311 ~~~~w~LW~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~-dS~W~-~s 388 (576)
T PRK13977 311 LGGSWTLWKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK-DSNWL-MS 388 (576)
T ss_pred CCccHHHHHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe-cCCee-EE
Confidence 01110 1221 1110 1111111211111 1 0001111 111111 12342 22
Q ss_pred cc-ccccccCCCCCeEEEEEeecC----------CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEE----eecCCC
Q 017625 205 LN-KIYDEHKDDSATVIQADFYHA----------NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKI----RRFPKS 269 (368)
Q Consensus 205 ~s-~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~----~~~~~~ 269 (368)
.+ ..+|.+++.+..+..++.|.. .+..+++.+|+.++++-+|. +|...-.++..... ...|+.
T Consensus 389 ~~v~~QP~F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~--~~~~~~~~i~~~~~~~ip~~MP~i 466 (576)
T PRK13977 389 ITVNRQPHFKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLG--VPEDKIEELAADSANTIPVMMPYI 466 (576)
T ss_pred EEecCCCCCCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcC--CchhhHHHHHhhcCceEeeccchh
Confidence 22 234556544444443444411 23457899999999888873 22110001220111 114555
Q ss_pred ccccCCCCcCCCCCCCC-CCCceEEeccccccCCC-CccchHHhHHHHHHHHHHHHHhC
Q 017625 270 LTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 270 ~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~-~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
...+.|-....||.... +..||-|.|.++..... +.++|-++.+|++|+-.++.--+
T Consensus 467 ta~f~pR~~gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~~~~ 525 (576)
T PRK13977 467 TSQFMPRAKGDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLGVDR 525 (576)
T ss_pred hhhhCCCCCCCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhCCCC
Confidence 55666766667886653 57899999999964222 27899999999999999887654
No 33
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=110.16 Aligned_cols=150 Identities=15% Similarity=0.048 Sum_probs=114.2
Q ss_pred chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCC------cceeeecCCc
Q 017625 11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN------FDLVWCRGTL 84 (368)
Q Consensus 11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~------~~~~~~~GG~ 84 (368)
..+...-.++|+.+||+++++++.+.+.++.|+..+++.++..+++...+...+... .+++. ..+....||
T Consensus 142 ~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~--~nhGll~l~~rp~wrtV~gg- 218 (447)
T COG2907 142 PSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT--DNHGLLYLPKRPTWRTVAGG- 218 (447)
T ss_pred chhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH--hccCceecCCCCceeEcccc-
Confidence 444566688999999999999999999999999999999988887776555444322 22221 111233577
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 164 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~ 164 (368)
+...+++|++.+ +++|.++++|.+|..-.+ | |+.+..+|+...||.||.++.+++...|++++. +++.+.+.
T Consensus 219 S~~yvq~laa~~---~~~i~t~~~V~~l~rlPd-G-v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~ 290 (447)
T COG2907 219 SRAYVQRLAADI---RGRIETRTPVCRLRRLPD-G-VVLVNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLG 290 (447)
T ss_pred hHHHHHHHhccc---cceeecCCceeeeeeCCC-c-eEEecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHH
Confidence 677888887555 478999999999998775 6 554555688999999999999999999999863 45667778
Q ss_pred ccCccce
Q 017625 165 NLASIDV 171 (368)
Q Consensus 165 ~l~~~~~ 171 (368)
.+.|...
T Consensus 291 a~~Ys~n 297 (447)
T COG2907 291 ALRYSAN 297 (447)
T ss_pred hhhhhhc
Confidence 8888643
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.97 E-value=8.6e-09 Score=99.61 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=83.1
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHHHH
Q 017625 17 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMD 94 (368)
Q Consensus 17 ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l~~ 94 (368)
++.+|+.||++++++++...+ ++..++.........+.++...+..+..+. ++.-+...+.||.||++ .|++++++
T Consensus 163 ~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g-~L~qal~r 240 (443)
T PTZ00363 163 LKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLG-GLPQAFSR 240 (443)
T ss_pred cccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHH-HHHHHHHH
Confidence 568999999999999998765 333222221111111223333333332221 12111233468899975 69999999
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 142 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~ 142 (368)
.++..|++++++++|++|..+++ |++++|++. |+++.|+.||++...
T Consensus 241 ~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 241 LCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccc
Confidence 99999999999999999998764 677888885 779999999995443
No 35
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.79 E-value=1.5e-06 Score=83.08 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=162.0
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---CcceeeecCCcchhhhHH
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEP 91 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~GG~~~~L~~~ 91 (368)
++|++.++.||+....+.. .||- ++++.++-....||.++...+++++-.-.+ ...+.+.+-..+++++.+
T Consensus 139 ~~L~~~~I~d~F~~~FF~S----nFW~--~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~P 212 (500)
T PF06100_consen 139 EDLGDKRIEDWFSESFFES----NFWY--MWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILP 212 (500)
T ss_pred HHhCcccHHHhcchhhhcC----chhH--hHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHH
Confidence 6789999999998643322 3443 345566677889999999988888522111 122223355567899999
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCc--eEEEEEEC--Ce--EE---ecCEEEEeeChhhHHHhhhhcccc-------
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVCG--KE--TY---SAGAVVLAVGISTLQELIKNSILC------- 155 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g--~v~~v~~~--g~--~~---~ad~VV~a~p~~~l~~ll~~~~l~------- 155 (368)
|.+.|+++|+++++||+|+.|..+.+++ .++.+.+. |+ ++ .-|.|+.|.+.-+-..-.++..-+
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~ 292 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKEL 292 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCC
Confidence 9999999999999999999999864312 24444442 32 33 568999987764322211111000
Q ss_pred CchhH--Hhhh----ccC----------ccce-EEEEEEecCC-C-------CCCCC------CceeecCCCCccceeee
Q 017625 156 NREEF--LKVL----NLA----------SIDV-VSVKLWFDKK-V-------TVPNV------SNACSGFGDSLAWTFFD 204 (368)
Q Consensus 156 ~~~~~--~~i~----~l~----------~~~~-~~v~l~~~~~-~-------~~~~~------~~~~~~~~~~~~~~~~d 204 (368)
...|. +.|. .++ ...+ .+..+-++.+ + .-..| .+.+..+ ...+|. .+
T Consensus 293 ~~~W~LW~~la~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~-~DS~Wl-mS 370 (500)
T PF06100_consen 293 GGSWSLWKNLAAKSPDFGNPEKFCTRIPESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITF-KDSNWL-MS 370 (500)
T ss_pred CchHHHHHHHHhcCcCCCChhhhcCCcccceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEe-ccCCeE-EE
Confidence 01110 1111 111 1111 1112222111 1 10011 0111111 122342 22
Q ss_pred cc-ccccccCCCCCeEEEEEeecC----------CCCCCCCHHHHHHHHHHHHhhhccCCCCCceeeeEE----eecCCC
Q 017625 205 LN-KIYDEHKDDSATVIQADFYHA----------NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKI----RRFPKS 269 (368)
Q Consensus 205 ~s-~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~----~~~~~~ 269 (368)
.+ ..+|.+++.+..+..++.|+. .+..+++.+|+.++++.+|. +|.....++..... .-.|+.
T Consensus 371 ~~i~~QP~F~~QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~HLg--~~~~~~~~~~~~~~~tiP~~MP~i 448 (500)
T PF06100_consen 371 ITIPRQPHFPDQPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYHLG--FPDDEIEELAKQSTNTIPCMMPYI 448 (500)
T ss_pred EEECCCCccCCCCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHhcC--CChhhhhHhhccCceEEEeccccc
Confidence 22 234556544444444444421 23456899999999988885 33321101110111 124555
Q ss_pred ccccCCCCcCCCCCCCC-CCCceEEeccccccCCC-CccchHHhHHHHHHH
Q 017625 270 LTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHG-SWSQERSYVTGLEAA 318 (368)
Q Consensus 270 ~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~-~~~~egA~~Sg~~aA 318 (368)
...+.|-....||...+ +..||-|.|.++..... +.++|-++.+|++|+
T Consensus 449 ts~fmpR~~gDRP~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 449 TSQFMPRAKGDRPQVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred hhhccCCCCCCCCCcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 55666766667886653 56899999999964222 268999999999885
No 36
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.57 E-value=1.3e-05 Score=75.08 Aligned_cols=195 Identities=12% Similarity=0.120 Sum_probs=108.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 165 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~ 165 (368)
..++..+.+.++++|++|+.+++|++|..++ +++++|.++++++.||.||+|++++.-. +.+ ..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~~------------ 200 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-LP------------ 200 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-CC------------
Confidence 4688999999999999999999999999876 6677888776689999999999997654 433 11
Q ss_pred cCccceEEEEEEecCCC-C-CCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHH
Q 017625 166 LASIDVVSVKLWFDKKV-T-VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAV 243 (368)
Q Consensus 166 l~~~~~~~v~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~ 243 (368)
+.... ...+.+..+. . ...+..... .+ . ..++ .+ . +++.++.-.......+....+++..+.++
T Consensus 201 ~~~~~--g~~~~~~~~~~~~~~~~~~~~~-~~-~--~~y~-----~p-~--~~g~~~iG~~~~~~~~~~~~~~~~~~~l~ 266 (337)
T TIGR02352 201 LRPVR--GQPLRLEAPAVPLLNRPLRAVV-YG-R--RVYI-----VP-R--RDGRLVVGATMEESGFDTTPTLGGIKELL 266 (337)
T ss_pred ccccC--ceEEEeeccccccCCcccceEE-Ec-C--CEEE-----EE-c--CCCeEEEEEeccccCccCCCCHHHHHHHH
Confidence 11111 1112222110 0 000100000 00 0 0011 01 0 12333222112112233233456778899
Q ss_pred HHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC--CCCCceEEeccccccCCCCccchHHhHHHHHHHHHH
Q 017625 244 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 321 (368)
Q Consensus 244 ~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~--~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~I 321 (368)
+.+.++||.+...++... |-. +..++++. .|... ...+|+|+++.+- ++ ++--+...|+..|+.|
T Consensus 267 ~~~~~~~P~l~~~~~~~~----~~g-~r~~t~D~---~piig~~~~~~~~~~~~g~~--g~---G~~~~p~~g~~la~~i 333 (337)
T TIGR02352 267 RDAYTILPALKEARLLET----WAG-LRPGTPDN---LPYIGEHPEDRRLLIATGHY--RN---GILLAPATAEVIADLI 333 (337)
T ss_pred HHHHHhCCCcccCcHHHh----eec-CCCCCCCC---CCEeCccCCCCCEEEEcccc--cC---ceehhhHHHHHHHHHH
Confidence 999999998875444322 211 11123332 23221 2357999988655 23 3445778899999998
Q ss_pred HH
Q 017625 322 VD 323 (368)
Q Consensus 322 l~ 323 (368)
+.
T Consensus 334 ~~ 335 (337)
T TIGR02352 334 LG 335 (337)
T ss_pred hc
Confidence 74
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.42 E-value=4.5e-05 Score=73.81 Aligned_cols=201 Identities=12% Similarity=0.036 Sum_probs=107.4
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhc
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 165 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~ 165 (368)
..++..|.+.++++|++|+++++|++|..++ +++++|+++++++.||+||+|++++.. .+++..... . .+..
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~-~l~~~~g~~-~----pi~p 272 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYST-ALLKPLGVD-I----PVYP 272 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchH-HHHHHhCCC-c----ccCC
Confidence 3688889999999999999999999998876 567678777778999999999999753 243321100 0 0111
Q ss_pred cCccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Q 017625 166 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY 245 (368)
Q Consensus 166 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (368)
.+ ...+.+-++.... .+...+. +... ...+ +. .++.++.........+....+.+..+.+.+.
T Consensus 273 ~r---g~~~~~~~~~~~~--~p~~~~~--~~~~-~~~~------~~---~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~ 335 (416)
T PRK00711 273 LK---GYSLTVPITDEDR--APVSTVL--DETY-KIAI------TR---FDDRIRVGGMAEIVGFDLRLDPARRETLEMV 335 (416)
T ss_pred cc---ceEEEEecCCCCC--CCceeEE--eccc-CEEE------ee---cCCceEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 11 1111221221110 1110010 0000 0000 00 1223321111111112222234566778888
Q ss_pred HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+.++||.+.+..+... |.. +..++++.. |.. ..+.+|+|++..+. ++| +.-|..+|+..|+.|+..
T Consensus 336 ~~~~~P~l~~~~~~~~----w~G-~r~~t~D~~---PiIG~~~~~gl~~a~G~~--g~G---~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 336 VRDLFPGGGDLSQATF----WTG-LRPMTPDGT---PIVGATRYKNLWLNTGHG--TLG---WTMACGSGQLLADLISGR 402 (416)
T ss_pred HHHHCCCcccccccce----eec-cCCCCCCCC---CEeCCcCCCCEEEecCCc--hhh---hhhhhhHHHHHHHHHcCC
Confidence 9999999875444322 211 112333322 211 12358999988665 333 445888999999988754
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.41 E-value=7.9e-06 Score=76.88 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=52.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
..+++.|.+.+++.|++|+++++|++|..++ ++|++|.++++.+.||+||+|++++... |++.
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence 4699999999999999999999999999988 7788899987679999999999987544 5544
No 39
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.30 E-value=1.4e-05 Score=76.85 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=82.8
Q ss_pred hccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCch-hhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhhhHHH
Q 017625 16 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE-QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPW 92 (368)
Q Consensus 16 ~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L~~~l 92 (368)
+++++|+.++++++++++...+.+... .+++..+.. +-++...+..++.++ ++.-+...+.||..|.++ |++++
T Consensus 162 ~~~~~~~~e~~~~f~L~~~~~~~i~ha--iaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~F 238 (438)
T PF00996_consen 162 DPEKKTFQELLKKFGLSENLIDFIGHA--IALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAF 238 (438)
T ss_dssp -TTTSBHHHHHHHTTS-HHHHHHHHHH--TS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHH
T ss_pred ccccccHHHHHHhcCCCHHHHHHHHHh--hhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHH
Confidence 345899999999999999876544322 122222211 234556666666653 333234466789988775 99999
Q ss_pred HHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEe
Q 017625 93 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 139 (368)
Q Consensus 93 ~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a 139 (368)
.+...=.||...||++|.+|.++++ |++.+|..+|+++.|+.||+.
T Consensus 239 cRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 239 CRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEEE
T ss_pred HHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEEC
Confidence 9988888999999999999999766 888899888999999999963
No 40
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.30 E-value=1.7e-05 Score=74.83 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=78.6
Q ss_pred hhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCCcceeeecCCcchhhhHHHHH
Q 017625 15 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 94 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~~~~~~~~GG~~~~L~~~l~~ 94 (368)
-.+-+.|.+|||++.|+++.+.+.++.+.+..-|+.+. ++++.. .... +.+.. .+..-.+|| +..+.+.|.
T Consensus 65 ~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~--G~vS--la~a~--~gl~sV~GG-N~qI~~~ll- 135 (368)
T PF07156_consen 65 LNLTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFA--GLVS--LAGAT--GGLWSVEGG-NWQIFEGLL- 135 (368)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhh--hhee--eeecc--CCceEecCC-HHHHHHHHH-
Confidence 44567899999999999999999999988877787753 344432 2211 11211 122234688 677888885
Q ss_pred HHHHcCCEEeccceeeeE-EecCCCce-EEEEEEC---Ce-EEecCEEEEeeChhhHH
Q 017625 95 SMRTRGCEFLDGRRVTDF-IYDEERCC-ISDVVCG---KE-TYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I-~~~~~~g~-v~~v~~~---g~-~~~ad~VV~a~p~~~l~ 146 (368)
++.|++| ++++|++| ...++ +. .+.|... +. .-.+|.||+|+|.....
T Consensus 136 --~~S~A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 136 --EASGANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred --HHccCcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 5678999 99999999 44443 32 2334333 22 34679999999996443
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.11 E-value=0.00071 Score=65.31 Aligned_cols=200 Identities=13% Similarity=0.158 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhccccCchhHHhhhcc
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 166 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~l~~~~~~~~i~~l 166 (368)
.+...|.+.++++|++++.+++|++|...++ +++++|+++++++.+++||+++..+.-. +....... .+ +
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~~~-l~~~~g~~-~~-------~ 253 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHSSV-VAAMAGFR-LP-------I 253 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhhHH-HHHHcCCC-CC-------c
Confidence 4666778888999999999999999986533 5567788776689999998888876532 22211000 00 0
Q ss_pred CccceEEEEEEecCCCCCCCCCceeecCCCCccceeeeccccccccCCCCCeEEEEEeec-CCCCCCCCHHHHHHHHHHH
Q 017625 167 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVSY 245 (368)
Q Consensus 167 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~e~~~~~~~~ 245 (368)
... ...+.+.++.. +.....+.. . .... ++ .+ .+++.++...... ........+.+..+.+++.
T Consensus 254 ~~~---~~~~~~~~~~~-~~~~~~~~~-~-~~~~-y~-----~p---~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 254 ESH---PLQALVSEPLK-PIIDTVVMS-N-AVHF-YV-----SQ---SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred Ccc---cceEEEecCCC-CCcCCeEEe-C-CCce-EE-----EE---cCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 011 11111222221 110011110 0 0000 11 01 0223333221111 1111122345677888999
Q ss_pred HhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 246 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 246 l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~-~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+.++||++++..+.. .|. +...++|+.. |.. ..+.+|+|++.-+. ++| +..|..+|+.+|+.|+..
T Consensus 319 ~~~~~P~l~~~~~~~----~w~-G~~~~t~D~~---PiIg~~~~~gl~~a~G~~--g~G---~~~ap~~G~~la~li~~~ 385 (407)
T TIGR01373 319 ILEMFPILSRVRMLR----SWG-GIVDVTPDGS---PIIGKTPLPNLYLNCGWG--TGG---FKATPASGTVFAHTLARG 385 (407)
T ss_pred HHHhCCCcCCCCeEE----Eec-cccccCCCCC---ceeCCCCCCCeEEEeccC--Ccc---hhhchHHHHHHHHHHhCC
Confidence 999999987544332 242 2222344432 322 12358999988665 333 344778899999988754
No 42
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.05 E-value=0.00025 Score=69.64 Aligned_cols=56 Identities=16% Similarity=0.032 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
..++..|++.+++.|++|+.+++|++|.. + +. +.|+++++++.||.||+|+..+.-
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~--~~-~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G--QP-AVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-C--Cc-eEEEeCCcEEECCEEEEccccccc
Confidence 35789999999999999999999999974 3 32 357777668999999999988643
No 43
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.02 E-value=0.00041 Score=66.37 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
..++..|.+.+++ |++|+.+++|++|..++ ++ +.|+++ |+.++||.||+|++++..
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 4688889888888 99999999999999876 54 456666 556899999999998754
No 44
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.98 E-value=0.0025 Score=60.82 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
.+...|.+.++++|++++.+++|++|..++ +++. |+++++++.+|.||+|++.+.
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~-v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLVT-VKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCcch
Confidence 577888888888999999999999998765 5553 666666899999999999864
No 45
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.87 E-value=0.0023 Score=61.85 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C----eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g----~~~~ad~VV~a~p~~~l 145 (368)
..++..|.+.+++.|++|+.+++|++|..++ +.++....+ + .+++||+||+|++++..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 4577888899999999999999999998766 545422222 2 26899999999999864
No 46
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.72 E-value=0.0052 Score=58.47 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
.++..+.+.+.+.|++|+++++|++|..++ +.+ .|.++++++.||.||+|++++..
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchh
Confidence 466677777788899999999999999866 544 46676568999999999998754
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.59 E-value=0.0089 Score=54.53 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.|.+.+++.|++++++++|++|..++ ++++ +... ++++++|.||.|.+...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcch
Confidence 477788888888999999999999998876 4443 3332 46899999999999853
No 48
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.0074 Score=55.16 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHHHhhhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
-.+++...++++|+.++-+..|+.|...++.+....|++ +|..+.|+.+|+|+++++.+ +++.
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 446677778999999999999999986543243344554 47789999999999999877 6664
No 49
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.41 E-value=0.0078 Score=58.56 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
+-..|.+.+++.|++|+++++|++|..++ +++.++..+|++++||.||.|.+...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44567777888999999999999998776 66666766678899999999998754
No 50
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.38 E-value=0.025 Score=53.94 Aligned_cols=206 Identities=15% Similarity=0.078 Sum_probs=105.7
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhhcc-ccCchhHHhhh
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSI-LCNREEFLKVL 164 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~~~-l~~~~~~~~i~ 164 (368)
.++..+++.++++| ..+..+++|+.+..++ +++.|.+.+++++||+||+|+.++.-. +..... +
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~~~---------- 222 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLGEL---------- 222 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcCCC----------
Confidence 57889999999999 5677799999998751 256788886669999999999987544 222110 0
Q ss_pred ccCccceEEEEEEecCCCCCCCCCc--eeecCCCCccceeeeccccccccCCCCCeE-EEEEeecCCCC-CCCCHHH-HH
Q 017625 165 NLASIDVVSVKLWFDKKVTVPNVSN--ACSGFGDSLAWTFFDLNKIYDEHKDDSATV-IQADFYHANEL-MPLKDDQ-VV 239 (368)
Q Consensus 165 ~l~~~~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~s~~~~~~~~~~~~v-~~~~~~~~~~~-~~~~~~e-~~ 239 (368)
.+.-.+.....+.++.......... ..... ..... ++ .+. .++.+ +.........+ .+...++ ..
T Consensus 223 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-y~-----~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (387)
T COG0665 223 PLPLRPVRGQALTTEPPEGLLADGLAPVVLVV-DDGGG-YI-----RPR---GDGRLRVGGTDEEGGDDPSDPEREDLVI 292 (387)
T ss_pred cCccccccceEEEecCCCccccccccceEEEe-cCCce-EE-----EEc---CCCcEEEeecccccCCCCccccCcchhH
Confidence 0011111111122211110000000 00000 00000 11 010 12333 22211111011 1111222 46
Q ss_pred HHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccccCCCCccchHHhHHHHHHHH
Q 017625 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAAN 319 (368)
Q Consensus 240 ~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~ 319 (368)
..++..+.+++|.+....+.. .|....+..+|+..+.. ....+.+|+|++..+.+ +| +.-+..+|+.+|+
T Consensus 293 ~~l~~~~~~~~P~l~~~~~~~----~w~g~~~~t~pd~~P~i-G~~~~~~~l~~a~G~~~--~G---~~~~p~~g~~lA~ 362 (387)
T COG0665 293 AELLRVARALLPGLADAGIEA----AWAGLRPPTTPDGLPVI-GRAAPLPNLYVATGHGG--HG---FTLAPALGRLLAD 362 (387)
T ss_pred HHHHHHHHHhCccccccccce----eeeccccCCCCCCCcee-CCCCCCCCEEEEecCCC--cC---hhhccHHHHHHHH
Confidence 788999999999987544433 24333322224433211 10123789999987763 33 3347788999999
Q ss_pred HHHHHhC
Q 017625 320 RVVDYLG 326 (368)
Q Consensus 320 ~Il~~~~ 326 (368)
.|+....
T Consensus 363 li~g~~~ 369 (387)
T COG0665 363 LILGGEP 369 (387)
T ss_pred HHcCCCC
Confidence 9988644
No 51
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.34 E-value=0.009 Score=61.52 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=48.9
Q ss_pred eeecCCc--chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChhhH
Q 017625 78 VWCRGTL--REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 78 ~~~~GG~--~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~~l 145 (368)
.++.+|+ ...++++|.+.+++ |++|+.+++|++|..++ ++++ |.+++ ..+.||.||+|++.+..
T Consensus 398 ~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 398 FYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred EeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 3445542 23688888888888 99999999999998876 5554 66664 45789999999998753
No 52
>PRK10015 oxidoreductase; Provisional
Probab=97.30 E-value=0.054 Score=52.73 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
+-..|.+.+++.|++|+.+++|++|..++ +++.++..++++++||.||.|.+...
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 44457777888899999999999998766 66777777677899999999988753
No 53
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.27 E-value=0.095 Score=52.70 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~ 144 (368)
..|+.++++.++++|++|+++++|++|..++ ++|++|++ ++ .++.||.||.|++++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4577888888899999999999999999876 67887775 23 3789999999999985
No 54
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.23 E-value=0.051 Score=55.47 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecC-CCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..|+.++++.++++|++|+.+++|++|..++ + |++++|++ +++ ++.||.||.|++++.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4688899999999999999999999998763 2 66777665 344 589999999999985
No 55
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.22 E-value=0.017 Score=57.72 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~~l 145 (368)
..++.++++.++++|++|+++++|++|..++ +++++|++ +| .++.|+.||.|++++.-
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 4688889899999999999999999999876 66777765 24 27899999999999854
No 56
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.16 E-value=0.069 Score=51.38 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
+-+-|++..++.|++++.+++|+.+..+++ +.+.++..++.+++|+.||.|-++...
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 556688888899999999999999998875 544444444568999999999987643
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.15 E-value=0.0015 Score=62.72 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=47.5
Q ss_pred ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
...||.-.-...+++.|.+.++++|++|+++++|++|..++ +++..|.+ +++.+.||.||+|++-.
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence 34577643467899999999999999999999999999887 55677888 68899999999998753
No 58
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.04 E-value=0.0023 Score=61.33 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChhhHHHhhhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
.+|.++|.+.++++|++|+.+++|+++..++ +++++|.++ + ..++||.||+|++.+....|+..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 4699999999999999999999999999887 678877755 3 38999999999999855555443
No 59
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0036 Score=58.33 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=84.3
Q ss_pred CchhhhhccCc--cHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcc
Q 017625 10 TDVAWRKYDSI--TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLR 85 (368)
Q Consensus 10 ~~~~~~~ld~~--S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~ 85 (368)
+...|..++.. |+.+++.+.++.++.++ +.--.........--+.++...+..+..|+ +..-+.+...||.+|++
T Consensus 154 ~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlg 232 (440)
T KOG1439|consen 154 DPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLG 232 (440)
T ss_pred ccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccCcc
Confidence 34456666554 99999999988887664 221111111111122344545555444443 12222333568899988
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeC
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVG 141 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p 141 (368)
+ |++..++.-.=-||+..+|.++.+|..+.+ |++.+|..+++...+..|||.-.
T Consensus 233 E-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 233 E-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVICDPS 286 (440)
T ss_pred h-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEecCc
Confidence 6 999999876666999999999999998655 88888888888888888877543
No 60
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.76 E-value=0.0054 Score=56.76 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=71.3
Q ss_pred ccccCCchhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---Ccceeeec
Q 017625 5 IDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCR 81 (368)
Q Consensus 5 ~~~~~~~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~ 81 (368)
+.|..... ++||+.|+.||+....+.. .||- .+...++-....|+.++...+.+++....+ ...+.+.+
T Consensus 151 ~kL~~t~E--E~L~~~tI~d~Fse~FF~s----NFW~--yW~tmFAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftk 222 (587)
T COG4716 151 IKLLMTPE--EKLDDLTIEDWFSEDFFKS----NFWY--YWQTMFAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTK 222 (587)
T ss_pred HHHHcCcH--HhcCCccHHHhhhHhhhhh----hHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccc
Confidence 34444443 7899999999998644433 3442 233444545667777777766655432211 22223334
Q ss_pred CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCc
Q 017625 82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC 119 (368)
Q Consensus 82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g 119 (368)
-..+++|+.+|..+|++||+++..++.|+.|.++...|
T Consensus 223 yNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~g 260 (587)
T COG4716 223 YNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPG 260 (587)
T ss_pred cchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcc
Confidence 45578999999999999999999999999999875324
No 61
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.70 E-value=0.0048 Score=58.61 Aligned_cols=56 Identities=25% Similarity=0.210 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.++.-|.+.|+++|++|+++|+|.+|.+.+ +.+.+|.+. |+++.+|+||+|.+=..
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch
Confidence 467788888999999999999999999987 556777776 77999999999987643
No 62
>PLN02697 lycopene epsilon cyclase
Probab=96.67 E-value=0.64 Score=46.42 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+.+.|+++ ++++|++|..++ +.+..+.+ +|+++.|+.||.|.++..
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~--~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS--DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC--CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 46677888888889998 788999998766 33443444 477899999999999976
No 63
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.66 E-value=0.055 Score=53.34 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhHH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l~ 146 (368)
+|+-..+.....+|++|++.++|+++..++ | |++|++. |+ .+.|+.||.|++++.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 577777788888999999999999999987 7 8999875 33 58999999999998754
No 64
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.65 E-value=0.43 Score=47.50 Aligned_cols=57 Identities=19% Similarity=0.058 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C--eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~a~p~~~l 145 (368)
..|+..++...+++|++|+.+++|++|..++ +. +.|.+. | .++.|+.||.|++++.-
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG--GL-WRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CE-EEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 4577778888889999999999999998865 53 445543 2 25899999999999753
No 65
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.65 E-value=0.48 Score=47.20 Aligned_cols=57 Identities=23% Similarity=0.142 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l 145 (368)
..|+..+++.+.++|++|+++++|++|..++ +. ++|.+. |+ ++.|+.||.|++++.-
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN--GL-WHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4577888888889999999999999998765 53 345432 43 6899999999999753
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.59 E-value=0.008 Score=56.35 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=51.4
Q ss_pred ceeeec-CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017625 76 DLVWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 142 (368)
Q Consensus 76 ~~~~~~-GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~ 142 (368)
...||+ .. .+.++++|.+.+++.|++|+++++|.+|..++ ... .+.+. |+++.||.+|+|++-
T Consensus 101 Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f-~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 101 GRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGF-RLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred ceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceE-EEEcCCCCEEEccEEEEecCC
Confidence 334676 55 56899999999999999999999999999876 333 46666 558999999999883
No 67
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.49 E-value=0.011 Score=57.58 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=50.4
Q ss_pred eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChh
Q 017625 79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 143 (368)
Q Consensus 79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~ 143 (368)
++.++ +..+++.|.+.++++|++|+++++|++|..++++++|.+|... +.++.++.||+|++-.
T Consensus 117 ~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 33344 3579999999999999999999999999876311778777764 3478999999999853
No 68
>PRK06847 hypothetical protein; Provisional
Probab=96.47 E-value=0.48 Score=45.00 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+++.|++|+++++|++|..++ +++. |.+ +|+++++|.||.|.+...
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence 477888888888899999999999998766 4444 554 477899999999999854
No 69
>PRK06185 hypothetical protein; Provisional
Probab=96.46 E-value=0.25 Score=47.58 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC---Ce-EEecCEEEEeeChhh-HHHhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~~ad~VV~a~p~~~-l~~ll 149 (368)
.+.+.|.+.+.+. |++++.+++|+++..++ +++++|.+. |+ +++||.||.|-+... +.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 4677777777664 89999999999998876 566655542 43 789999999998864 34443
No 70
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.45 E-value=0.88 Score=43.44 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
..|.+.|.+.+.+.|++++ +++|+.+..+++ + .+.|+++ |++++|+.||.|.+...
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 4577888888888899886 668988887642 3 3456665 55899999999999875
No 71
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.37 E-value=0.011 Score=58.40 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHH----cC--CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH
Q 017625 86 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 86 ~~L~~~l~~~l~~----~G--~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~ 146 (368)
..|+..+.+.+++ +| ++|+++++|++|..++ +.++.|.++.+++.||.||+|++.+...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 3688999999988 78 6799999999999875 3356687776689999999999998654
No 72
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.37 E-value=0.21 Score=47.51 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+++.| ++|+.+++|++|..++ ++++ |+.. |+++++|.||.|-+...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence 48888888888888 9999999999998776 5554 5554 66899999999888753
No 73
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.36 E-value=0.31 Score=46.71 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+++.|++|+.+++|++|..++ ++++ |+++ |+++++|.||.|.+...
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 578888888988999999999999998776 4454 6654 67899999999998864
No 74
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.35 E-value=0.28 Score=46.76 Aligned_cols=55 Identities=11% Similarity=0.168 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+.+ .|++++.+++|++|..++ +.++ |.+. |+++.||.||.|.+...
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVR-VTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCCh
Confidence 588888888887 499999999999998766 4454 5554 66899999999999864
No 75
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.35 E-value=0.14 Score=51.13 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..++.+|+...++.|+.|..+++|++|.... +++++|.+.-+.+++.+||-|++.+.
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVET--DKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccceeccCcceecceEEechhHHH
Confidence 4699999999999999999999999999877 45678988877899999999999987
No 76
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.27 E-value=0.054 Score=51.46 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=50.4
Q ss_pred ceeeecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeChhh
Q 017625 76 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 144 (368)
Q Consensus 76 ~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~~~ 144 (368)
...||.-.-+..++++|.+.+++.|++|+++++|++| ++ ++ ..+.+. ++.++||+||+|++-..
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 3457754446789999999999999999999999999 33 33 356654 35799999999998754
No 77
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.24 E-value=0.014 Score=56.02 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeE-EecCEEEEeeChhhHH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQ 146 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~-~~ad~VV~a~p~~~l~ 146 (368)
.++.+|++.+.++|++|++|++|+.|...++ | ++.+.+. |++ ++|+.||.+++.....
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 5889999999999999999999999999875 5 5555555 555 9999999999987654
No 78
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.13 E-value=0.0043 Score=58.97 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=78.7
Q ss_pred ccHHHHH---HHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCC---CcceeeecCCcchhhhHHHH
Q 017625 20 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEPWM 93 (368)
Q Consensus 20 ~S~~d~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~---~~~~~~~~GG~~~~L~~~l~ 93 (368)
.++.+|. .+ .+++.+++.|+.|+..-.|+.+|+++++.++..+ -..+..... ..-..+|++| ..+|++.|.
T Consensus 129 ~~~~e~~d~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~Rv-P~~~~~d~~yf~d~~q~~P~~G-yt~~~~~ml 205 (377)
T TIGR00031 129 EELQEIADPDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRV-PVVLSEDSSYFPDRYQGLPKGG-YTKLFEKML 205 (377)
T ss_pred CCHHHHHHHHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEec-ceEecCCCCccccccccccccc-HHHHHHHHH
Confidence 4456665 54 6899999999999999999999999999876521 111101100 1123578999 567888775
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHH
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 147 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ 147 (368)
++.+.+|++|+.+..|...+ +++ ...++.+. +.||.|.|++.+..
T Consensus 206 ---~~~~i~v~l~~~~~~~~~~~--~~~---~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 206 ---DHPLIDVKLNCHINLLKDKD--SQL---HFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred ---hcCCCEEEeCCccceeeccc--cce---eecccccc-CcEEEecCchHHHh
Confidence 45578999999888887544 433 23333333 88999999987764
No 79
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.12 E-value=0.02 Score=56.27 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=47.9
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C--eEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~a~p~~ 143 (368)
+..++..|.+.+++.|++|+++++|++|..++ ++|++|.+. + ..+.++.||+|++..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 35699999999999999999999999999865 788888763 2 368999999999853
No 80
>PRK07045 putative monooxygenase; Reviewed
Probab=96.04 E-value=1.2 Score=42.51 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHH
Q 017625 87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQE 147 (368)
Q Consensus 87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ 147 (368)
.|.+.|.+.+.. .|++|+++++|++|..+++ +.++.|+++ |+++++|.||.|-+... +.+
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 466677777654 5799999999999998764 544557765 67899999999988865 344
No 81
>PLN02463 lycopene beta cyclase
Probab=95.98 E-value=1.8 Score=42.41 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|-+.|.+.+.+.|++++ .++|++|..++ +++ .|+++ |++++||.||.|.+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE--SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 466777777888899996 57999998776 444 46666 56899999999998753
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.87 E-value=0.024 Score=54.79 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=47.2
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhhH
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 145 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~l 145 (368)
...++..|.+.++++|++|+++++|++|..++ ++|++|... |+ ++.|+.||+|+.-..-
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35699999999999999999999999999986 889998764 44 5789999999887653
No 83
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.86 E-value=0.62 Score=44.63 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE--CCeEEecCEEEEeeChhh-HHHhhh
Q 017625 86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST-LQELIK 150 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~~~~ad~VV~a~p~~~-l~~ll~ 150 (368)
..|.+.|.+.+.+.+ ++++++++|+.+..++ +.|+ +++ +|++++||.||-|=+... +.+.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 358889999998876 8999999999999987 4566 544 467899999999888754 344444
No 84
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.063 Score=50.39 Aligned_cols=124 Identities=12% Similarity=0.061 Sum_probs=84.4
Q ss_pred chhhhhccCccHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHH--hhcCCCcceeeecCCcchhh
Q 017625 11 DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKI 88 (368)
Q Consensus 11 ~~~~~~ld~~S~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~--~~~~~~~~~~~~~GG~~~~L 88 (368)
+..+.+..+.++.|||+..++++++..-++. ++-....++.++..-+.....|+ +++-+..-+.||--|.++ |
T Consensus 214 ~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~----aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-L 288 (547)
T KOG4405|consen 214 PDEYVEFRERPFSEYLKTMRLTPKLQSIVLH----AIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-L 288 (547)
T ss_pred cHHHHHhhcCcHHHHHHhcCCChhhHHHHHH----HHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-c
Confidence 4456778889999999999999987643332 23333456666666555544443 233233445677777666 9
Q ss_pred hHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE-EEECCeEEecCEEEEe
Q 017625 89 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVCGKETYSAGAVVLA 139 (368)
Q Consensus 89 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~-v~~~g~~~~ad~VV~a 139 (368)
.+...+...=.|+=.-++.+|+.|..+.++.+++. +...|+++.+.++|+.
T Consensus 289 pQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 289 PQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred hHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeec
Confidence 99999988778999999999999999874232221 2223778888887765
No 85
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.80 E-value=0.29 Score=44.13 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-----CeEEecCEEEEeeChhhHHHhhhh
Q 017625 86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
+.+...|.+.+++.| +++.++ .|.++..+. +|+.++... ....+.+++|++++||+-+ |++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence 358888888888776 889888 677787443 666665543 2356888999999998766 5443
No 86
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.79 E-value=0.03 Score=53.80 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.++|.+.+++.|++|+++++|++|..++ +++ .|.++++++.||.||+|++.+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 4688999999999999999999999998766 544 5666666899999999999874
No 87
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.70 E-value=0.024 Score=48.77 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 143 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~ 143 (368)
.+.+.+.+.++++|.+|+++++|++|..++ ++ |.|++.. ++++||+||+|++..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEEecceeeeeeEEEeeecc
Confidence 477888888999999999999999999987 44 6688874 589999999999963
No 88
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.67 E-value=0.036 Score=55.83 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred cCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017625 81 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 144 (368)
Q Consensus 81 ~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~ 144 (368)
.+| ..|+.+|.+.+++.|++|+++++|++|..++ |+|++|... |+ .+.+ +.||+|++-..
T Consensus 214 ~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 214 AGG--QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred CCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 455 5799999999999999999999999998654 889998653 43 3566 57999887654
No 89
>PRK07121 hypothetical protein; Validated
Probab=95.59 E-value=0.038 Score=54.78 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=48.9
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~ 144 (368)
+..+.+.|.+.+++.|++|+++++|++|..+++ |+|++|... ++ ++.| +.||+|++...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 356999999999999999999999999988754 688888764 33 5788 99999998754
No 90
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.52 E-value=0.039 Score=55.88 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~ 144 (368)
..|+..|.+.++++|++|+++++|++|..++ |+|++|... ++ ++.| +.||+|++...
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4689999999999999999999999998875 788887653 33 5788 99999998865
No 91
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.47 E-value=0.06 Score=51.89 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=50.3
Q ss_pred eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
||.......+.+.+.+.+++.|++|+++++|++|..++ +. +.|.++++++.+|.||+|++...
T Consensus 98 ~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 98 FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence 44433346799999999999999999999999997655 43 45677777899999999999743
No 92
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.39 E-value=0.062 Score=54.25 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=48.6
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..|+..|.+.+++.|++|+.+++|++|..++ |+|.|+.. +|+ .+.|+.||+|++-..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 45799999999998999999999999999865 88988875 243 579999999988753
No 93
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.33 E-value=0.049 Score=55.17 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~ 144 (368)
..++..|.+.+++.|++|+++++|++|..+++ |+|++|... ++ .+.|+ .||+|++-..
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 46888898899999999999999999998754 889998764 43 47887 5988887754
No 94
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.29 E-value=0.92 Score=42.22 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh-HHHhhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST-LQELIK 150 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~-l~~ll~ 150 (368)
.|-+.|.+.+++.|++|+.+++|+.+..+. ++++.+... |+ +++||.||-|-+... +.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccc--cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 477788888888999999999999998877 445433332 32 689999999988865 344443
No 95
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.23 E-value=0.11 Score=49.87 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhhHHHhhhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
.|++.|.+.+++. |++++++++|++|...+| |+ |.|.+. | .++.|+.|++.++...+. |+..
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-LLqk 250 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALP-LLQK 250 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECCEEEECCchHhHH-HHHH
Confidence 5999999999887 999999999999999876 64 445541 3 479999999999998877 5444
No 96
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.19 E-value=0.064 Score=54.06 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~ 144 (368)
..|+..|.+.+++.|++|+++++|++|..++ |+|++|.+. |+ ++.|+ .||+|++-..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 5699999999999999999999999999876 889998763 44 47885 6888887654
No 97
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.17 E-value=0.059 Score=52.57 Aligned_cols=58 Identities=28% Similarity=0.312 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~ 144 (368)
..+++.|.+.+++.|++|+++++|++|..+++ |+|++|.+. ++ .+.++.||+|++...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 35889999999999999999999999998654 678877653 33 368999999998754
No 98
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.15 E-value=0.072 Score=52.65 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-C--eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-K--ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g--~~~~ad~VV~a~p~~~l 145 (368)
..++.+|.+.+++.|++|+++++|++|..+++ +.+. +.+ + | .+++||+||+|++.+..
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 46899999999999999999999999987653 4333 332 2 3 26899999999998764
No 99
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.15 E-value=0.066 Score=54.20 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEec-CEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~a-d~VV~a~p~~~ 144 (368)
..|+..|.+.++++|++|+++++|++|..++ ++|++|... ++ ++.+ +.||+|++...
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 4699999999999999999999999998765 788888764 33 4676 68999988754
No 100
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.11 E-value=1.1 Score=42.78 Aligned_cols=55 Identities=18% Similarity=-0.016 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.|.+.+.+.|+..+.+++|++|..++ +.++ |+++ |++++||.||.|-+...
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE--DEVT-VTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEE-EEECCCCEEEEeEEEEecCCCc
Confidence 577888888887766569999999998776 4454 5555 66899999999988854
No 101
>PRK07588 hypothetical protein; Provisional
Probab=95.07 E-value=2.1 Score=40.95 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+. .|++|+++++|++|..++ +.|+ |++. |+++++|.||.|-+...
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 35566666554 378999999999998776 4454 5554 77889999999988754
No 102
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.00 E-value=0.097 Score=47.15 Aligned_cols=58 Identities=26% Similarity=0.260 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~~ 144 (368)
..+...|.+.+.+.|++|++++.|++|..+++ ++|.++.++ + .++.|+.||.|++.+.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 45888899999999999999999999987663 477777653 1 3689999999998653
No 103
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.87 E-value=0.1 Score=50.44 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C--eEEecCEEEEeeChh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g--~~~~ad~VV~a~p~~ 143 (368)
.+.+.|.+.+++.|++|+++++|+++..++ +++..+... + ..+++|.||+|++..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 589999999999999999999999998876 667665443 3 258999999998863
No 104
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.86 E-value=0.11 Score=52.60 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=48.9
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~~ 144 (368)
+..|..+|.+.+++.|++|+.+++++++..+++ |+|.||.. + |+ .+.|+.||+|++-..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 356999999998889999999999999998644 88999875 2 43 578999999988754
No 105
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.83 E-value=0.11 Score=52.78 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..+...|.+.+++.|++|+++++|++|..+++ |+|.||.. +|+ .+.|+.||+|++-..
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 356999999999889999999999999988654 78888875 243 678999999988754
No 106
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.81 E-value=2.5 Score=40.35 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=41.2
Q ss_pred hhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
|-+.|.+.+.+ .|++|+.+++|++|..++ +++. |++. |+++.+|.||.|.+...
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVR-VTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCh
Confidence 55666666665 479999999999998765 4454 6654 66899999999999864
No 107
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.72 E-value=0.12 Score=50.43 Aligned_cols=56 Identities=13% Similarity=0.288 Sum_probs=45.0
Q ss_pred chhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeCh
Q 017625 85 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGI 142 (368)
Q Consensus 85 ~~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~ 142 (368)
+..+++.|.+.+++ .|++|+++++|++|..++ ++|.+|.. +++ ++.|+.||+|++.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 35688999888875 499999999999998765 77888653 344 5899999999887
No 108
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.70 E-value=0.1 Score=51.96 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--C-e--EEecCEEEEeeCh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGI 142 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VV~a~p~ 142 (368)
..+++.|.+.++++|++|+++++|++|..++ |+|++|.+. + + ++.|+.||+|++-
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 3588999999999999999999999998765 788887663 2 2 5899999999974
No 109
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.67 E-value=4.2 Score=38.76 Aligned_cols=55 Identities=25% Similarity=0.155 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
..|-+.+.+.+. .++.+++++.|++|..++ +.+ .|+++ |++++|+.||-+.++..
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~-~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG--DGV-LVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceE-EEEECCCCEEEeeEEEECCCccc
Confidence 356777777777 567899999999999877 423 35555 67999999999988643
No 110
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.66 E-value=0.12 Score=51.31 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhhHH
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~l~ 146 (368)
.+.++|.+.++++| ++|+++++|++|..+++ +++. |.+ + |+ +++|++||++++.+...
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 58999999999887 69999999999998654 5333 332 2 43 68999999999997643
No 111
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.66 E-value=0.11 Score=52.35 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=46.0
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~ 144 (368)
+..+...|.+.+++.|++|+++++|++|..++ ++|++|.+. ++ .+.|+ .||+|++-..
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 35688999999999999999999999999865 788887763 43 47886 5888766543
No 112
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.56 E-value=0.14 Score=51.97 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..|+..|.+.+.+.|++|++++.|+++..+++ |+|.||.. +|+ .+.|+.||+|++-..
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 457999999988888999999999999998644 88999875 243 578999999988754
No 113
>PRK08244 hypothetical protein; Provisional
Probab=94.51 E-value=5 Score=39.78 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC-eEEecCEEEEeeChhh-HHHhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VV~a~p~~~-l~~ll 149 (368)
+-+.|.+.+++.|++|+.+++|++|..++ ++++ |++ +| ++++||+||.|-+... +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 55666677778899999999999998776 4454 333 24 4799999999988754 34443
No 114
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.39 E-value=3.1 Score=39.97 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhh
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll 149 (368)
|.+.|.+.+.+. |++|+++++|++|..++ +.++ |.+. |++++||.||.|-+... +.+.+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~ 174 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAW-LTLDNGQALTAKLVVGADGANSWLRRQM 174 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEE-EEECCCCEEEeCEEEEeCCCCChhHHHc
Confidence 556777777664 79999999999998766 4443 5554 77899999999999753 44443
No 115
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.23 E-value=0.16 Score=50.04 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.|.+.+++.|++++.+ .|+.|..++ |+|.+|..+++.+.++.||+|++...
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCc
Confidence 469999999999999999876 899987655 77888888888899999999998864
No 116
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.22 E-value=0.2 Score=50.72 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..+...|.+.+++.|++|+.++.|++|..++ |+|.+|.. +|+ .+.|+.||+|++...
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 34688899998888899999999999998875 88888764 243 579999999999753
No 117
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.21 E-value=0.14 Score=51.80 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~~ 144 (368)
..|++.|.+.++++|++|+++++|++|..++ ++|++|.+. ++ .+.++ .||+|++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4689999999999999999999999999876 788888763 33 47786 6888888754
No 118
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.05 E-value=0.12 Score=49.46 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=44.3
Q ss_pred CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce-EEecCEEEEeeChhh
Q 017625 83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE-TYSAGAVVLAVGIST 144 (368)
Q Consensus 83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~-~~~ad~VV~a~p~~~ 144 (368)
.+.+.+.+...+.|+++|++|+++++|++|..+ + | +++ |+ ++.++.||.|++...
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~---~-v---~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD---G-V---TLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC---c-E---EEccCCeeEecCEEEEcCCCcC
Confidence 345778898999999999999999999999643 2 3 343 55 599999999998853
No 119
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.02 E-value=0.16 Score=46.56 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce----EEecCEEEEeeChhhHHHhhhhc
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE----TYSAGAVVLAVGISTLQELIKNS 152 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~----~~~ad~VV~a~p~~~l~~ll~~~ 152 (368)
.-|...+++.+.+|++++.|++|..+++++++++|.+. ++ .+.++.||+++++-...+||-..
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence 33444454458999999999999886333788888864 32 46789999999998887776554
No 120
>PRK12839 hypothetical protein; Provisional
Probab=94.01 E-value=0.17 Score=51.16 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce-EE-ecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~-~~-~ad~VV~a~p~~~ 144 (368)
..|+..|.+.+++.|++|+++++|++|..+++ |+|++|... ++ ++ .++.||+|++...
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 46899999999999999999999999987644 789998753 33 34 4589999987754
No 121
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.00 E-value=0.22 Score=50.62 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=44.5
Q ss_pred chhhhHHHHHHHHHc----CCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~----G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~ 143 (368)
+..+...|.+.+++. |++|+++++|++|..+++ |+|+||.+. |+ .+.|+.||+|++-.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 346777777766543 899999999999988653 688888752 33 57899999999763
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.98 E-value=0.24 Score=50.22 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=47.8
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..+.+.|.+.+++.|++|++++.|++|..++ |+|.|+.. +|+ .+.|+.||+|++...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 35699999999998999999999999998765 77887753 243 589999999998853
No 123
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=93.93 E-value=7.7 Score=38.94 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChhhH-HHhh
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGISTL-QELI 149 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~~l-~~ll 149 (368)
+-+.|.+.+.+. |++|+.+++|++|..++ ++|+ |++ +| .+++||.||-|-+.... .+.+
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 444555666654 89999999999998876 4454 443 35 37899999999888654 3444
No 124
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.91 E-value=0.2 Score=51.35 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~ 144 (368)
+.|.+.+++.|++|++++.|++|..++ |+|.||.+. |+ .+.|+.||+|++-..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 566667888899999999999998875 788888752 43 579999999988743
No 125
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.90 E-value=0.25 Score=50.43 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~ 143 (368)
..+...|.+.++++|++|+.+++|+++..+++ |+|.||.. + |+ .+.|+.||+|++-.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 56899999999889999999999999988433 78888864 2 43 57899999999654
No 126
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.87 E-value=0.23 Score=50.21 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~ 144 (368)
..++..|.+.+++.|++|++++.|+++..++ |+|+||.+. ++ .+.|+.||+|++-..
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688999998888899999999999999875 889998752 33 578999999998754
No 127
>PRK06116 glutathione reductase; Validated
Probab=93.64 E-value=0.27 Score=48.18 Aligned_cols=57 Identities=14% Similarity=0.245 Sum_probs=45.0
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
...+.+.+.+.++++|++|+++++|++|..+++ +.+. +.+ +|+++.+|.||++++..
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCCC
Confidence 345778888889999999999999999987653 4343 454 46789999999998764
No 128
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.64 E-value=0.24 Score=48.30 Aligned_cols=63 Identities=25% Similarity=0.371 Sum_probs=48.4
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~ 150 (368)
.+.+.+.+.+.+++.|++|+++++|++|.. + +++..+..+++++.+|.||++++...-..++.
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~--~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~ 252 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIG-E--DKVEGVVTDKGEYEADVVIVATGVKPNTEFLE 252 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEec-C--CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHH
Confidence 345778888889999999999999999963 2 44556667777899999999998754333443
No 129
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.57 E-value=0.24 Score=49.46 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecC-EEEEeeChh
Q 017625 86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad-~VV~a~p~~ 143 (368)
..++..+.+.+.+. |++|+++++|++|..++ |+|++|... ++ ++.|+ .||+|++-.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 35888888877664 99999999999998875 889888764 43 57886 688888775
No 130
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.49 E-value=0.33 Score=49.34 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=47.9
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~~ 144 (368)
+..|...|.+.+.+.|++|+.++.|+++..+++ |+|.||.+ + |+ .+.|+.||+|++-..
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 356899999988889999999999999998644 77888865 2 43 578999999988754
No 131
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.41 E-value=0.32 Score=49.81 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=48.0
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..+++.|.+.+.+.|++|+.++.+++|..+++ |+|.||.. +|+ .+.|+.||+|++-..
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 356899999988888999999999999987643 78888765 243 579999999988754
No 132
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.37 E-value=0.4 Score=43.13 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIS 143 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~ 143 (368)
.+.+.|.+.+.+.|++|+.++.|++|..+++..+|.+|.++ | .++.|+.||.|++..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 47888888888899999999999999987631168887764 1 268999999999854
No 133
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.35 E-value=0.32 Score=46.36 Aligned_cols=53 Identities=28% Similarity=0.351 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeCh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 142 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~ 142 (368)
.+...+.+.++++ +.+|+ ...|++|..++ ++|++|.+. |+.+.+|.||+|+++
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 3556666777775 56764 77999999988 889999987 779999999999999
No 134
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.28 E-value=0.34 Score=49.87 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=46.9
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
...|...|.+.+.+.|++|+.+++|++|..++ |+|.|+.+ +|+ .+.|+.||+|++-..
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 34688889888888999999999999999876 78888765 243 468999999998643
No 135
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.27 E-value=0.2 Score=50.03 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=47.1
Q ss_pred chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~~ 144 (368)
+..+++.|.+.+++. |++|+.+++|++|..++ |+|.+|.+. ++ .+.|+.||+|++-..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 356999999988875 89999999999998765 788887753 33 589999999998843
No 136
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.24 E-value=0.23 Score=49.17 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC--C--eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~a~p~~~ 144 (368)
..+.+.|.+.+++ .|++|++++.|++|..++ ++|.+|.+. + ..+.++.||+|++...
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688999999987 699999999999998765 778877654 3 3689999999998864
No 137
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.22 E-value=0.21 Score=47.34 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
..++..|.+.+.+. |++|+.+++|++|. . + .|+++++.+.||+||+|++++.-
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~--~---~v~t~~g~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVE--T--G---TVRTSRGDVHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEe--c--C---eEEeCCCcEEeCEEEECCCCChh
Confidence 35778888888775 99999999999995 2 3 25566556889999999999753
No 138
>PRK08275 putative oxidoreductase; Provisional
Probab=93.16 E-value=0.34 Score=48.86 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.||.. +|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 46889999999999999999999999988633 77888763 243 479999999998853
No 139
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.15 E-value=0.28 Score=48.52 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEE---EC-Ce--EEecCEEEEeeChhhHH
Q 017625 87 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 87 ~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~---~~-g~--~~~ad~VV~a~p~~~l~ 146 (368)
.|.++|.+.+.+ .|++|+++++|++|..+++ +.+ .+. ++ ++ +++||+||+|++.+...
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 588899888864 4899999999999987733 443 343 23 42 68999999999998743
No 140
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.09 E-value=0.31 Score=46.75 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+++.|++|+.+++|++|..++ +.+. |.+. |++++||.||.|.+...
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 588889888888899999999999998766 4454 5554 67899999999988753
No 141
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.95 E-value=0.31 Score=48.97 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..+...|.+.+++.|++|++++.|+++..+++ ++|.+|.. +|+ .+.|+.||+|++-..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 56889999988889999999999999988763 45887653 243 589999999998753
No 142
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.87 E-value=0.36 Score=48.64 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHH---c-CCEEeccceeeeEEecCCCceEEEEEEC-----------------Ce--EEecCEEEEeeCh
Q 017625 86 EKIFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVCG-----------------KE--TYSAGAVVLAVGI 142 (368)
Q Consensus 86 ~~L~~~l~~~l~~---~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----------------g~--~~~ad~VV~a~p~ 142 (368)
..++..|.+.+++ . |++|+++++++++..++ |+|+||.+. ++ ++.|+.||+|++-
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 3588888777652 3 59999999999999865 889998741 12 5789999999876
Q ss_pred hh
Q 017625 143 ST 144 (368)
Q Consensus 143 ~~ 144 (368)
..
T Consensus 226 f~ 227 (549)
T PRK12834 226 IG 227 (549)
T ss_pred cc
Confidence 54
No 143
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.87 E-value=0.42 Score=45.61 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
..+...+.+.+++.|++++++++|++|..++ +.+ .|.+. |+++.+|.||++++...
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccC--CEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 3466677788899999999999999998655 433 35554 67899999999998754
No 144
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=92.80 E-value=0.21 Score=47.94 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=53.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~ 150 (368)
..+-+.+...++++|+++++++.|.++..+.+ |++.-|.+. |.++.||.||+-+++....+++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 45778888889999999999999999998766 888777776 77999999999999875554433
No 145
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.79 E-value=0.41 Score=48.54 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCC--CceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..+.+.|.+.+++.|++|++++.|++|..+++ +|+|.|+.. +|+ .+.|+.||+|++-..
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356889999999999999999999999987641 157888764 244 578999999988754
No 146
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.73 E-value=0.34 Score=34.84 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=34.7
Q ss_pred CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC
Q 017625 83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG 127 (368)
Q Consensus 83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~ 127 (368)
.+.+.+...+.+.+++.|++|++++.|++|..+++ + ++ |++.
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~~ 78 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTLE 78 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEEE
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEEe
Confidence 44566888888999999999999999999998875 5 66 6653
No 147
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.59 E-value=0.51 Score=46.36 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC---eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.++++|++|+++++|++|..++ +.+. +.+ ++ +++++|.||++++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 4577788888999999999999999998665 4443 443 34 5799999999988753
No 148
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.43 E-value=0.47 Score=46.56 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
...+.+.+.+.+++.|++|+++++|++|..++ +.+. +.+. |+++++|.||++++...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 34577888888999999999999999998765 4343 4444 67899999999998753
No 149
>PRK07395 L-aspartate oxidase; Provisional
Probab=92.36 E-value=0.37 Score=48.54 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=46.7
Q ss_pred chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~ 143 (368)
+..+++.|.+.+++. |++|++++.|++|..++++|+|.||... |+ .+.|+.||+|++-.
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 356999999988754 8999999999999876422778887653 44 37899999999874
No 150
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.34 E-value=0.61 Score=45.46 Aligned_cols=56 Identities=25% Similarity=0.243 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.+++.|++++++++|++|..++ +++. +..+++++.+|.||++++...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~-v~~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVL-VVTEDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEE-EEECCeEEEcCEEEEeeCCCC
Confidence 4466677777889999999999999998654 4443 455677899999999987643
No 151
>PLN02507 glutathione reductase
Probab=92.19 E-value=0.58 Score=46.50 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=44.9
Q ss_pred cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
+...+.+.+.+.+++.|++|++++.|++|..++ +++. +..+ |+++++|.||++++..
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCC
Confidence 345577788888999999999999999998654 4443 4444 6689999999998865
No 152
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.19 E-value=0.61 Score=45.78 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.+++.|++|+++++|++|..++ +++. +.. +| .++++|.||++++...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 4567788888999999999999999998765 5554 444 35 4799999999988653
No 153
>PRK07804 L-aspartate oxidase; Provisional
Probab=92.11 E-value=0.44 Score=47.89 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C--eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g--~~~~ad~VV~a~p~~~ 144 (368)
..+.+.|.+.+++.|++|+.++.|++|..+++ |+|.++.+. + ..+.|+.||+|++...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46899999999999999999999999988654 678887652 2 2579999999998743
No 154
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.07 E-value=0.55 Score=45.83 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.++++|+++++++.|++|..++ +++ .+..+++++.+|.||++++...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCc
Confidence 4577788888999999999999999998765 544 3555555789999999987643
No 155
>PRK14694 putative mercuric reductase; Provisional
Probab=91.91 E-value=0.59 Score=46.05 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.+++.|++|++++.|++|..++ +.+ .+..+++++++|.||++++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCCC
Confidence 4578888889999999999999999998655 433 3555666899999999987654
No 156
>PRK08071 L-aspartate oxidase; Provisional
Probab=91.85 E-value=0.36 Score=48.11 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~ 144 (368)
..+.++|.+.++ .|++|+.++.|++|..++ |+|.+|.+. ++ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 458888888776 589999999999998765 778887653 33 579999999998744
No 157
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.83 E-value=0.69 Score=45.83 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
...+.+.+.+.++++|++|++++.|++|..+++ +. ..+.+ +|+++++|.||++++..
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNAD-GS-KHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ce-EEEEEcCCCEEEcCEEEEeeCCC
Confidence 456788899999999999999999999986643 42 33554 46789999999998864
No 158
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.80 E-value=0.69 Score=45.25 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=43.8
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
...+.+.+.+.+++.|+++++++.|++|..+++ + +. +.+ +|+++++|.||++++..
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~-~-~~-v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTDD-G-LK-VTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-e-EE-EEEcCCcEeecCEEEEeeCCC
Confidence 345667788889999999999999999986552 3 33 444 46789999999998864
No 159
>PRK07190 hypothetical protein; Provisional
Probab=91.67 E-value=0.67 Score=45.94 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
+-..|.+.+++.|++|+.+++|++|..++ ++++....+|++++|++||.|.+....
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~--~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQ--AGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 44556667888899999999999999877 345433334678999999999998653
No 160
>PRK06126 hypothetical protein; Provisional
Probab=91.50 E-value=17 Score=36.57 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE--C-Ce--EEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--G-KE--TYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-g~--~~~ad~VV~a~p~~~l 145 (368)
|-..|.+.+++. |++|+++++|++|..++ ++|+.+.. . |+ ++++|+||.|-+....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA--DGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC--CeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 455666666654 78999999999998776 44553222 1 43 6899999999988653
No 161
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.47 E-value=0.77 Score=44.11 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL 148 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~l 148 (368)
.+.+.+.+.++++|++|+++++|++|.. + +.+. +.+. |+++.+|.||++++...-..+
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~-v~l~~g~~i~aD~Vv~a~G~~pn~~l 245 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVE-LTLQSGETLQADVVIYGIGISANDQL 245 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEE-EEECCCCEEECCEEEECCCCChhhHH
Confidence 3556677778889999999999999975 3 4343 5554 778999999999987533333
No 162
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=91.40 E-value=0.71 Score=47.08 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..+...|.+.++++| ++|+.+++|++|..++ ++|++|.. +++ .+.|+.||+|++...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357888888887775 9999999999998766 77888753 243 689999999999754
No 163
>PRK14727 putative mercuric reductase; Provisional
Probab=91.33 E-value=0.7 Score=45.66 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
+.+.+.+.+.+++.|++|+++++|++|..++ +.+ .+..+++++.+|.||++++...
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCC
Confidence 4567778888999999999999999998765 433 3555556799999999998864
No 164
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.19 E-value=0.96 Score=44.34 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=45.4
Q ss_pred cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-C-eEEecCEEEEeeChhhH
Q 017625 84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K-ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g-~~~~ad~VV~a~p~~~l 145 (368)
+...+.+.+.+.+++.|+++++++.|++|..+++ +.+ .+.++ | +.+++|.||++++...-
T Consensus 205 ~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 205 FDSMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKL-VIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceE-EEEECCCcEEEEcCEEEEeeCCCcC
Confidence 3445778888889999999999999999986542 433 35554 5 47999999999987533
No 165
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.19 E-value=0.74 Score=45.34 Aligned_cols=55 Identities=18% Similarity=0.165 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.++++|++|+++++|++|..++ +++. +.+ +|+++++|.||++++..
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCC
Confidence 4466778888999999999999999998655 4454 444 46789999999998764
No 166
>PRK06834 hypothetical protein; Provisional
Probab=91.10 E-value=0.73 Score=45.69 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.+-+.|.+.+++.|++|+.+++|++|..++ +.|. |++. |++++||+||.|.+...
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~-v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD--TGVD-VELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCC
Confidence 466777788888899999999999999876 4454 5554 56899999999988854
No 167
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=91.01 E-value=0.83 Score=37.63 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCEE-eccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeCh
Q 017625 100 GCEF-LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 142 (368)
Q Consensus 100 G~~i-~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~ 142 (368)
|++| +...+|++|...++ + ...+..+|..+.||.||+|++-
T Consensus 114 ~i~v~~~~~~V~~i~~~~~-~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDD-G-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCC-c-EEEEECCCCEEEeCEEEECCCC
Confidence 5443 35679999998874 4 3323344778999999999864
No 168
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.91 E-value=0.74 Score=44.29 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELIK 150 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll~ 150 (368)
.|.+.|.+.+++.|++|+.+++|++|..++ +.++ |++. |++++||.||.|-+... +.+.+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG--DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 466788888888899999999999998776 4454 5554 66899999999998854 345543
No 169
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.85 E-value=0.75 Score=48.74 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll 149 (368)
...+.+.+.++++|++|++++.|++|..+++ +.+..+... |+++.+|.||++++...-..|+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~ 250 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA 250 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence 3456777889999999999999999976432 334445554 7789999999999876443443
No 170
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.82 E-value=1 Score=45.74 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..+.+.|.+.+.+ .|++|+.++.|++|..++ |+|.||.. +++ .+.|+.||+|++-..
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4588999988766 589999999999998765 77888754 244 579999999998853
No 171
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.79 E-value=0.83 Score=46.78 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHc--------C-----CEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeCh
Q 017625 86 EKIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGI 142 (368)
Q Consensus 86 ~~L~~~l~~~l~~~--------G-----~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~ 142 (368)
..+++.|.+.++++ | ++|+++++|++|..++ |+|.++.. +++ .+.|+.||+|++.
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 46889999888776 7 9999999999999765 77887753 243 5799999999986
No 172
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=0.83 Score=42.65 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=70.9
Q ss_pred chhhhhccC-ccHH-HHHHHcCCCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHh--hcCCCcceeeecCCcch
Q 017625 11 DVAWRKYDS-ITAR-ELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTLRE 86 (368)
Q Consensus 11 ~~~~~~ld~-~S~~-d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~--~~~~~~~~~~~~GG~~~ 86 (368)
...|+++.. .+.. ...+.++++....+-+.-.++-.+ + -+.++...+..+..|+. +.-+-+...||+-|.++
T Consensus 155 ~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~E 230 (434)
T COG5044 155 KSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGE 230 (434)
T ss_pred hhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchh
Confidence 334444433 3333 334456666654443333322211 1 34555555555544431 11122345578877776
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEe
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 139 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a 139 (368)
|.+..++.-.=.||++.+|+++.+|.... . |.+|..++.+..|..||..
T Consensus 231 -l~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~~ka~KiI~~ 279 (434)
T COG5044 231 -LSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLTQKAGKIISS 279 (434)
T ss_pred -hhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcceeecCcccCC
Confidence 99999987766799999999999998765 2 4445555668888888864
No 173
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=90.48 E-value=0.54 Score=47.16 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce---EEecCEEEEeeChhhHHHhhh
Q 017625 97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VV~a~p~~~l~~ll~ 150 (368)
++.+.+|++++.|++|..++ +++++|++. ++ .+.++.||+++++-...+||-
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl 261 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQ 261 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence 35579999999999999986 788998864 32 258899999999866666554
No 174
>PRK13748 putative mercuric reductase; Provisional
Probab=90.01 E-value=1 Score=45.44 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=44.7
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+..+++++.+|.||++++...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCc
Confidence 4577888888999999999999999998655 543 3555556799999999988743
No 175
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.94 E-value=1.2 Score=43.73 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---CC--eEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g--~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.++++|++|+++++|++|..++ +.+. +.+ +| +++++|.||++++..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVT-VTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEE-EEEEecCCCeEEEEeCEEEECcCcc
Confidence 4577888888999999999999999997654 4343 332 34 379999999998864
No 176
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.72 E-value=1.1 Score=40.72 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|+++++ +.|++|..++ +.+ .|.+. ++++.+|+||+|++..
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC--Cee-EEEeCCCCEEEeCEEEECCCCC
Confidence 35778888888999999999 8999998765 433 35555 5689999999999974
No 177
>PRK08163 salicylate hydroxylase; Provisional
Probab=89.68 E-value=0.97 Score=43.23 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.|.+.|.+.+.+.| ++++.+++|++|..++ +.++ |... |+++.||.||.|.+....
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence 36777888877765 8999999999998765 4454 5544 678999999999888654
No 178
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=89.66 E-value=1.2 Score=43.67 Aligned_cols=57 Identities=28% Similarity=0.296 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.+-+-|.+...+.|++++.++ |+++..+++ |.|+.|++. |++++||.||=|.+...+
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence 466778888888999999885 888887765 888889886 778999999999987543
No 179
>PRK06184 hypothetical protein; Provisional
Probab=89.64 E-value=1 Score=44.70 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-CeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~~~~ad~VV~a~p~~~l 145 (368)
+-+.|.+.+++.|++|+++++|++|..++ +.|+ +.+ + +++++||+||.|.+....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDA--DGVT-ARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEE-EEEEeCCCeEEEEeCEEEECCCCchH
Confidence 55677777888899999999999998776 3454 333 3 468999999999998653
No 180
>PRK09897 hypothetical protein; Provisional
Probab=89.59 E-value=1.2 Score=44.61 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHcC--CEEeccceeeeEEecCCCceEEEEEEC--CeEEecCEEEEeeCh
Q 017625 88 IFEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGI 142 (368)
Q Consensus 88 L~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~ad~VV~a~p~ 142 (368)
..+.+.+.+++.| ++|+.+++|++|..++ +++ .|.++ ++.+.||.||+|++-
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~-~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGV-MLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEE-EEEECCCCeEEEcCEEEECCCC
Confidence 4444555566666 6888999999998876 444 36653 367999999999885
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.54 E-value=1.1 Score=44.68 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|++++++++|++|..++ +.. .|.+. |+.+.+|+||+|++..
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETED--GLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 3578888889999999999999999998765 433 45554 6689999999999985
No 182
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=89.30 E-value=1.5 Score=43.30 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C--C--eEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.++++|++|+++++|++|..++ +++. +.. + | +++++|.||++++..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCc
Confidence 4577888888999999999999999998665 4443 433 2 3 468999999998864
No 183
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=89.02 E-value=1.6 Score=42.78 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC--eEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g--~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+..+| .++++|.||++++..
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCc
Confidence 4477788888999999999999999997554 433 244444 368999999999864
No 184
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.93 E-value=1.3 Score=42.95 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 149 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll 149 (368)
..+.+.+.+.+++.|+++++++.|++|..+ +.+ .+..+|+++.+|.||++++...-..++
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~---~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGE---ERV-KVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecC---CCE-EEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 346677778889999999999999999743 333 233457789999999998875433343
No 185
>PRK06370 mercuric reductase; Validated
Probab=88.87 E-value=1.7 Score=42.76 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEE-EEEEC--CeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCG--KETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~-~v~~~--g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|++|+++++|++|..++ +.+. .+... ++++++|.||++++..
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 3466778888999999999999999998765 3332 22222 3479999999998864
No 186
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.86 E-value=1.6 Score=43.41 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=45.4
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhhHH
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~l~ 146 (368)
...+.+.+.+.+++.|+++++++.|++|...+ +.+. +.. +|+++.+|.||++++...-.
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCCCc
Confidence 34567788888999999999999999998654 3333 444 47789999999999875433
No 187
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=88.86 E-value=2.1 Score=43.40 Aligned_cols=58 Identities=26% Similarity=0.219 Sum_probs=46.4
Q ss_pred chhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
+..|.++|.+.+.+. |++++.++.|++|..++ |+|.||.. +|+ .+.|+.||+|++-..
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356999999887764 78999999999999875 78888764 243 579999999987744
No 188
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.75 E-value=1.1 Score=43.50 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=42.0
Q ss_pred cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
+.+.+.+.+.+.++++|++|+++++|++|. + +.|. ..+|+++.+|.||++.+..
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~--~~v~--~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVL--D--KEVV--LKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEe--C--CEEE--ECCCCEEEccEEEEccCCC
Confidence 345577888888999999999999999985 3 3232 2347789999999998753
No 189
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.70 E-value=1.2 Score=49.01 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHc---CCEEeccceeeeEEecCC---Cc----eEEEEEEC------Ce--EEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTR---GCEFLDGRRVTDFIYDEE---RC----CISDVVCG------KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~---G~~i~~~t~V~~I~~~~~---~g----~v~~v~~~------g~--~~~ad~VV~a~p~~~ 144 (368)
.++..|.+.+++. |++|+++++|+++..+++ +| +|+||.+. |+ .+.|+.||+|++-..
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 4778888887754 899999999999998641 12 78888753 33 579999999998744
No 190
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=88.65 E-value=1.1 Score=44.81 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCC-ceEEEEEE----CCe--EEecCEEEEeeChhhHHHhhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-g~v~~v~~----~g~--~~~ad~VV~a~p~~~l~~ll~ 150 (368)
|..++.+.+++...+|++++.|++|..++++ ++|++|.+ +|+ ++.|+.||+|+..=...+||-
T Consensus 216 ~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 216 FDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred hhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 3343333333334899999999999987542 36777754 243 589999999999866666653
No 191
>PTZ00058 glutathione reductase; Provisional
Probab=88.61 E-value=1.7 Score=43.81 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=43.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECC-eEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g-~~~~ad~VV~a~p~~ 143 (368)
+.+.+.+.+.+++.|++|++++.|++|..+++ +++..+..++ +++++|.||++++..
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcCCC
Confidence 45778888889999999999999999986542 3343222233 479999999998864
No 192
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.52 E-value=1.8 Score=43.93 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=45.5
Q ss_pred chhhhHHHHHHHHHcC----CEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G----~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~ 144 (368)
+..|...|.+.+++.+ ++|+.++.|+++..+++ |+|.||.+. ++ .+.|+.||+|++-..
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 3568888888776554 77999999999998644 789988752 33 478999999988754
No 193
>PLN02815 L-aspartate oxidase
Probab=88.46 E-value=1.3 Score=45.02 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCc--eEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC-G---KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g--~v~~v~~-~---g~--~~~ad~VV~a~p~~ 143 (368)
..+..+|.+.++++ |++|+.++++++|..+++++ +|.|+.. + |+ .+.|+.||+|++-.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 46889998888765 89999999999999864313 3778764 2 43 56899999999864
No 194
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.19 E-value=2.2 Score=41.92 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C--CeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~--g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|++|+++++|++|..++ +.+ .+.+ + ++++++|.||++++..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~-~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGK-IITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEE-EEEEEeCCCceEEEeCEEEEeECCC
Confidence 4467778888899999999999999998755 322 2333 2 3579999999998864
No 195
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=88.15 E-value=1.4 Score=46.49 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.+.+.++++|++|++++.|++|.-+ +++..|.+. |+++.+|.||++++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA---TKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC---CceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34566777889999999999999999643 335566665 77899999999998753
No 196
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.14 E-value=2.3 Score=41.94 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.++++|++|++++.|++|..+.+ +++..+.. +| +++.+|.||++++...
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 44777888889999999999999999976212 33443433 45 3689999999998853
No 197
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=88.04 E-value=1.6 Score=41.62 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.|-+.|.+.+++. |++|+.+++|+++..++ +.+ .|.++ |++++||.||.|.+....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD--DGW-ELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeE-EEEECCCCEEEeCEEEEeCCCCch
Confidence 4667777777776 99999999999998766 434 45554 668999999999998653
No 198
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.03 E-value=2.1 Score=43.41 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..|...|.+.+.+. |++|+.++.|++|..++ |+|.||.. +|+ .+.|+.||+|++-..
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46888888877765 78999999999999875 77887654 243 679999999998643
No 199
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.00 E-value=1.7 Score=43.37 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++.|.+++++++|++|..++ +. +.|.+. |+++.+|.||+|++..
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~-~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GL-IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--Ce-EEEEECCCCEEEcCEEEECCCCC
Confidence 3588899999999999999999999998865 43 345555 6689999999999984
No 200
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=87.76 E-value=1.7 Score=41.36 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.|.+.+++.| ++++ ++.|++|..++ +.+. |.+. |++++||.||.|.+...
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP--DAAT-LTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEE-EEECCCCEEEeeEEEEeCCCCc
Confidence 57888888888887 8899 99999998766 4443 6664 56899999999999853
No 201
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.66 E-value=2.4 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=43.2
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC---eEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g---~~~~ad~VV~a~p~~ 143 (368)
...+.+.+.+.+++.|++|++++.|++|...+ +.+. |.. ++ +++++|.||++++..
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence 34577888888999999999999999998654 4333 443 33 379999999999864
No 202
>PRK09077 L-aspartate oxidase; Provisional
Probab=87.14 E-value=2.7 Score=42.26 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=45.8
Q ss_pred chhhhHHHHHHHHHc-CCEEeccceeeeEEecC----CCceEEEEEEC----Ce--EEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVCG----KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~----~~g~v~~v~~~----g~--~~~ad~VV~a~p~~~ 144 (368)
+..+...|.+.++++ |++|+.+++|+++..++ ++|+|.+|... |+ .+.++.||+|++...
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 356888888888765 89999999999998753 12678887652 43 579999999988754
No 203
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=87.01 E-value=36 Score=34.23 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEE-EEEC-Ce-EEecCEEEEeeChhh-HHHhhh
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISD-VVCG-KE-TYSAGAVVLAVGIST-LQELIK 150 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~-v~~~-g~-~~~ad~VV~a~p~~~-l~~ll~ 150 (368)
+-+.|.+.+.+. |++|+++++|+++..++ +.++. +... ++ ++++|.||.|.+... +.+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 445566666665 68999999999998776 44432 2222 43 689999999998754 444443
No 204
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.97 E-value=2.7 Score=41.39 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=42.4
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE-EEE--CC--eEEecCEEEEeeChh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVC--GK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~-v~~--~g--~~~~ad~VV~a~p~~ 143 (368)
...+.+.+.+.+++.|++|++++.|++|..++ +.+.. +.. +| +++++|.||++++..
T Consensus 214 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 214 DTETAKTLQKALTKQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CHHHHHHHHHHHHhcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 34577888888999999999999999998654 33321 221 22 479999999999864
No 205
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=86.72 E-value=2.1 Score=43.26 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.+...+.+.+++. |++++. ..|+++..+++ +++.+|.+. |..+.|+.||+|++...
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 4556777778877 567764 47888876633 678888887 56899999999999984
No 206
>PRK10262 thioredoxin reductase; Provisional
Probab=86.69 E-value=1.6 Score=40.58 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-----C--eEEecCEEEEeeChhhHHHh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----K--ETYSAGAVVLAVGISTLQEL 148 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g--~~~~ad~VV~a~p~~~l~~l 148 (368)
.+.+.+.+.+++.|+++++++.|++|.-++ +++.+|++. + +++.+|.||++++...-..+
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l 252 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAI 252 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhH
Confidence 366777777888899999999999997544 345555542 1 36999999999987543333
No 207
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=86.43 E-value=2.6 Score=42.76 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
+...+.+.+++. |++|+ .+.|++|..++ ++|.+|.+. |..+.|+.||.|++..
T Consensus 102 y~kaL~e~L~~~~nV~I~-q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQPNLDLF-QGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcc
Confidence 456666667665 67874 66799998877 778888887 6689999999999964
No 208
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=86.43 E-value=2.6 Score=41.46 Aligned_cols=56 Identities=18% Similarity=-0.051 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHcCCE--EeccceeeeEEecCCCceEEEEEEC--C-e--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVCG--K-E--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~--i~~~t~V~~I~~~~~~g~v~~v~~~--g-~--~~~ad~VV~a~p~~~ 144 (368)
+.+.+-|.+++++.|.+ |+++++|++|...+ ++ |.|++. + . +..+|+||+|++...
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence 35888888888888887 99999999998765 54 445543 2 2 468999999999753
No 209
>PRK02106 choline dehydrogenase; Validated
Probab=86.20 E-value=1.1 Score=45.17 Aligned_cols=53 Identities=9% Similarity=0.130 Sum_probs=41.6
Q ss_pred HHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce---EEecCEEEEeeChhhHHHhhhh
Q 017625 97 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~---~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
++.+.+|++++.|++|..++ +++++|++. ++ .+.++.||++++.-...+||-.
T Consensus 212 ~~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~ 269 (560)
T PRK02106 212 KRPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL 269 (560)
T ss_pred CCCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh
Confidence 34579999999999999986 788888863 22 3588999999998777766543
No 210
>PLN02985 squalene monooxygenase
Probab=85.90 E-value=40 Score=33.70 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE---CCe--EEecCEEEEeeChhh-HHHhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g~--~~~ad~VV~a~p~~~-l~~ll 149 (368)
.|.+.|.+.+++. |++++.+ .|+++..++ +.+.+|++ +|+ +++||.||.|-+... +.+.+
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l 214 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSL 214 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHh
Confidence 4778888877766 6888866 577776554 55666765 354 467999999988754 33433
No 211
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=85.88 E-value=3.3 Score=42.29 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCC-CceEEEEEE----CCe--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC----GKE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~-~g~v~~v~~----~g~--~~~ad~VV~a~p~~~ 144 (368)
..+...+.+.+++.+++|+.+++|+++..+++ +|+|.||.. +|+ .+.|+.||+|++...
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 35666777777777789999999999998642 157888765 243 578999999999864
No 212
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=85.87 E-value=1.9 Score=41.55 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=35.1
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
+.+.++|||-+||.. |+. +++..|...|..+|+.|+++.+
T Consensus 445 ~~t~i~gLy~aGdGA--G~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGA--GLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccc--ccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 457889999999998 676 6888999999999999998875
No 213
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=85.79 E-value=1.9 Score=41.13 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
+.+++.|++++++++|++|..++ .. |.++++++.+|++|+|++..
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--QV---VKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--CE---EEECCeEEeCCEEEECCCCC
Confidence 44677899999999999998754 32 44678889999999999975
No 214
>PRK09126 hypothetical protein; Provisional
Probab=85.76 E-value=2.9 Score=39.89 Aligned_cols=55 Identities=24% Similarity=0.202 Sum_probs=41.2
Q ss_pred hhhHHHHHHHH-HcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.|.+.+. ..|++|+.+++|+++..++ +.+. |.+. |++++||.||.|-+...
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQ-VTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEE-EEEcCCCEEEeCEEEEeCCCCc
Confidence 35566666654 4589999999999998765 4443 5554 67899999999998753
No 215
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=85.53 E-value=3.4 Score=38.98 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017625 82 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 82 GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~ 144 (368)
|+|-.-+.....+.|...|.+++++|+|+.+..++| |.|. |.+. + ++++||.++++++=.-
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccCcc
Confidence 445445888888889999999999999999999887 6654 4432 3 4789999888876543
No 216
>PLN02661 Putative thiazole synthesis
Probab=84.98 E-value=3.5 Score=38.79 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.9
Q ss_pred hhhHHHHHHHH-HcCCEEeccceeeeEEecCCCceEEEEEEC---------C------eEEecCEEEEeeC
Q 017625 87 KIFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG---------K------ETYSAGAVVLAVG 141 (368)
Q Consensus 87 ~L~~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---------g------~~~~ad~VV~a~p 141 (368)
.+...|.+.+. +.|++|+.++.|.++..++ +++.||..+ + ..+.|++||+|++
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 34566776554 4689999999999999876 778887741 1 1579999999998
No 217
>PLN02546 glutathione reductase
Probab=84.93 E-value=3.9 Score=41.30 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=43.3
Q ss_pred cchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeE-EecCEEEEeeChhh
Q 017625 84 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIST 144 (368)
Q Consensus 84 ~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~-~~ad~VV~a~p~~~ 144 (368)
+.+.+.+.+.+.++++|++|++++.|++|..+++ +.+ .+..++++ ..+|.||++++...
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence 3455667777889999999999999999986543 544 35555444 45899999988754
No 218
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.76 E-value=3 Score=39.63 Aligned_cols=60 Identities=5% Similarity=0.142 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh-HHHhh
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~-l~~ll 149 (368)
.|.+.|.+.+++.+ ++++++++|++|..++ ++|. |.+++++++||.||.|=+... +.+.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~~~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSI-IKFDDKQIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEE-EEEcCCEEeeCEEEEeCCCCchhHHhc
Confidence 47788888887765 8899999999998776 4454 666666999999999988864 33444
No 219
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=84.56 E-value=3.7 Score=40.20 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=45.6
Q ss_pred CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-Ce--EEecCEEEEeeChh
Q 017625 83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~--~~~ad~VV~a~p~~ 143 (368)
++-+-+.+.+.+.+++.|.+++++++|+++...++ + + .+.+. |+ ++++|.|++|++=.
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~-~-v-~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD-G-V-LVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC-e-E-EEEEecCCCCEEEeeEEEEccCCc
Confidence 44566888999999998899999999999988763 3 4 35554 43 78999999998864
No 220
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=84.53 E-value=4.2 Score=39.37 Aligned_cols=82 Identities=20% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC-CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 245 YLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 245 ~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~-~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
.+-++.|++..++++..=+. .++++- ..|... .+... ..++||||||+-+. .- +.+-|+.+|..|+..+..
T Consensus 290 ~~~r~Ipgle~a~~~r~G~~-~~~~~i-~~p~~l--~~~l~~k~~~~l~~AGqi~g--~~--Gy~ea~a~G~~Ag~n~~~ 361 (436)
T PRK05335 290 RVFRMIPGLENAEFVRYGVM-HRNTFI-NSPKLL--DPTLQLKKRPNLFFAGQITG--VE--GYVESAASGLLAGINAAR 361 (436)
T ss_pred HHHhcccchhceEEEeceEE-eecccc-CChhhC--chhccccCCCCEEeeeeecC--ch--HHHHHHHHHHHHHHHHHH
Confidence 44557899987655432221 122211 011111 11222 25799999999884 32 335677889988888877
Q ss_pred HhCCCCcccccc
Q 017625 324 YLGDGSFSKIIP 335 (368)
Q Consensus 324 ~~~~~~~~~~~~ 335 (368)
.+. +.+..+.|
T Consensus 362 ~~~-g~~~~~~~ 372 (436)
T PRK05335 362 LAL-GKEPVIPP 372 (436)
T ss_pred Hhc-CCCCCCCC
Confidence 765 34444444
No 221
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.52 E-value=1.7 Score=40.85 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=37.7
Q ss_pred CCcchhhhHHHHHHHHH------cCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeCh
Q 017625 82 GTLREKIFEPWMDSMRT------RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGI 142 (368)
Q Consensus 82 GG~~~~L~~~l~~~l~~------~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~ 142 (368)
+|.+..+++.|.+.+-+ .-.+|+.+++|+++...++ |++. +.+. + .++++|.||+|++.
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVR-LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEE-EEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEE-EEEEECCCCCeEEEecCEEEEcCCc
Confidence 56666788777765421 2368999999999998874 4543 4443 2 36899999999975
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.51 E-value=3 Score=40.88 Aligned_cols=50 Identities=24% Similarity=0.217 Sum_probs=34.9
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----------C-----------eEEecCEEEEeeCh
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----------K-----------ETYSAGAVVLAVGI 142 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----------g-----------~~~~ad~VV~a~p~ 142 (368)
..+.+++.|++|++++.+++|..+++ |++++|.+. | .++.+|.||++++.
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 34557788999999999999976443 667666541 1 14677777777765
No 223
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.27 E-value=2.8 Score=39.59 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.++++|++++++++|++|. + +. |.+ +|+++.+|.||++++..
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCC
Confidence 3466777888999999999999999884 3 32 344 47789999999999864
No 224
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=84.17 E-value=37 Score=31.84 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCC--CCCCCCCceEEeccccccCCCCccchHH
Q 017625 233 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM--RGFTSFPNLFMAGDWITTRHGSWSQERS 310 (368)
Q Consensus 233 ~~~~e~~~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p--~~~~~~~~L~laGd~~~~~~~~~~~egA 310 (368)
.+.+-..+.++-.|....|.+..+++... |. +++.+ ..+...+ +.-.-..|||+|-.+. ||| +..+
T Consensus 401 VD~d~F~qkiwP~L~nRVP~fetakVqsa----Wa-GyyD~--NtfD~ngViG~HP~y~Nly~atGFs--ghG---vqqs 468 (509)
T KOG2853|consen 401 VDHDYFYQKIWPHLANRVPAFETAKVQSA----WA-GYYDH--NTFDDNGVIGEHPLYTNLYMATGFS--GHG---VQQS 468 (509)
T ss_pred cChHHHHhhhhHHHHhcccccceeeeeeh----hc-ccccc--cccccCCcccCCcceeeeeeeeccc--ccc---hhcc
Confidence 34455678888888888898876555432 32 22211 1111111 1112247999987666 554 4556
Q ss_pred hHHHHHHHHHHHHH
Q 017625 311 YVTGLEAANRVVDY 324 (368)
Q Consensus 311 ~~Sg~~aA~~Il~~ 324 (368)
...|+..|+.|+.-
T Consensus 469 ~avgRAiaElIldG 482 (509)
T KOG2853|consen 469 PAVGRAIAELILDG 482 (509)
T ss_pred hHHHHHHHHHHhcC
Confidence 67788888888764
No 225
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=84.03 E-value=56 Score=33.80 Aligned_cols=41 Identities=24% Similarity=0.210 Sum_probs=32.4
Q ss_pred EEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 102 EFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 102 ~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.++.+++|++|..++ ++|+ |.+. |+++++|.||.|-+....
T Consensus 208 ~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S~ 249 (668)
T PLN02927 208 VIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWSK 249 (668)
T ss_pred EEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCcH
Confidence 478999999998776 5566 5554 668999999999998653
No 226
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=83.65 E-value=0.34 Score=47.14 Aligned_cols=58 Identities=28% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C-eEEecCEEEEeeChhhHHHhhhh
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
+.+.+++.|++|++++.|.++..++ ++|++|++. | .++.|+.||=|++-..+..+..-
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 3344567899999999999999987 789998875 2 37899999999997766655443
No 227
>PRK08013 oxidoreductase; Provisional
Probab=83.62 E-value=3.4 Score=39.73 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh-HHHhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~-l~~ll 149 (368)
.|-+.|.+.+++. |++|+++++|++|..++ +.+. |++ +|++++||.||-|-+... +.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAF-LTLKDGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHc
Confidence 4667777777775 78999999999998766 3343 444 477899999999988764 33444
No 228
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=83.60 E-value=42 Score=31.99 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C--eEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g--~~~~ad~VV~a~p~~~ 144 (368)
.|-+.|.+.+.+.|++++.+ .|++|..++ +.+. |.+. + .+++||.||.|-+...
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR--DGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEE-EEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 35566777778889999766 599998766 4443 4332 2 3789999999999754
No 229
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.52 E-value=2.6 Score=41.59 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------------C--eEEecCEEEEeeC
Q 017625 93 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------------K--ETYSAGAVVLAVG 141 (368)
Q Consensus 93 ~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------------g--~~~~ad~VV~a~p 141 (368)
.+.+++.|+++++++.+++|.-++ |+|++|.+. | .++.+|.||++++
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 445677899999999999997544 777776542 1 2456666666655
No 230
>PRK07846 mycothione reductase; Reviewed
Probab=82.97 E-value=4.4 Score=39.69 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHH
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~ 146 (368)
..+.+.+.+.+ +.|++++++++|++|..++ +++. +.++ |+++++|.||++++...-.
T Consensus 207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 207 DDISERFTELA-SKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCccCc
Confidence 33555554433 4689999999999998655 4443 5554 6789999999999875433
No 231
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=82.96 E-value=1.8 Score=45.69 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
...+.++++|++++++++|++|..++ .. |.+. |+++.+|++|+|++..
T Consensus 59 ~~~~~~~~~gv~~~~g~~V~~Id~~~--k~---V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 59 NSKDWYEKHGITLYTGETVIQIDTDQ--KQ---VITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred CCHHHHHHCCCEEEcCCeEEEEECCC--CE---EEECCCcEeeCCEEEECCCCC
Confidence 34456778899999999999998765 32 3444 6689999999999975
No 232
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.54 E-value=3.9 Score=40.14 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=23.1
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCceEEEEE
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV 125 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~ 125 (368)
..+.+++.|++|++++.|++|..++ +++++|.
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~--~~~~~v~ 348 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDE--GRVTGVE 348 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecC--CceEEEE
Confidence 4556778899999999999997554 3334443
No 233
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=2.9 Score=36.51 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=48.8
Q ss_pred eecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHH
Q 017625 79 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 79 ~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~ 146 (368)
+|+|=.+..|.+.+.+.-++.|-+|.+. .|.++..+. ...+ +.++.+.+.+|.||+++++..-.
T Consensus 63 FPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF~-l~td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 63 FPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPFK-LWTDARPVTADAVILATGASAKR 126 (322)
T ss_pred CCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCeE-EEecCCceeeeeEEEecccceee
Confidence 5565223459999999999999999988 578888776 4343 55667789999999999986543
No 234
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=82.16 E-value=53 Score=32.19 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=31.0
Q ss_pred CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.+|+.++||..+.-.|. .++.-|+.||..||+.|.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 46899999987643332 6778899999999999998764
No 235
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=82.02 E-value=5.6 Score=38.98 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.+ +.|.++++++.|++|..++ +++. +.+. |+++++|.||++++...
T Consensus 210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHHH-hcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 34555555434 4689999999999998665 4443 4444 66899999999998653
No 236
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=82.01 E-value=3 Score=38.58 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---CeEEecCEEEEeeChhhHHHh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KETYSAGAVVLAVGISTLQEL 148 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~~~~ad~VV~a~p~~~l~~l 148 (368)
++-+.|.+.+++.||.+..+-+|.+....+ |+|+.|-+. +-.++||.+|+|.+.-.-+.|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 589999999999999999999999999988 888877665 225799999999887544433
No 237
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=81.79 E-value=2.6 Score=38.87 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHc------CCEEeccceeeeEEecCCCceEEEEEEC---Ce--EEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~--~~~ad~VV~a~p~~~ 144 (368)
++.+|...+++. -++|.++++|++|..++ |+|.+|..- |+ .+.+|.||++++-..
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 777777666543 26899999999999655 889988752 44 578888888877654
No 238
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.31 E-value=3.3 Score=39.73 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=36.0
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
+.+.+.|+++++++.|+.|..++ ..| +..+|+++.+|++|+|++...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~--~~v--~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT--REL--VLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC--CEE--EECCCCEEEcCEEEEccCCCC
Confidence 34567899999999999998765 432 223477899999999999863
No 239
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.26 E-value=4.5 Score=40.41 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=38.3
Q ss_pred HHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017625 92 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 92 l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~ 144 (368)
+.+.+++ +|++|++++.|++|.-++ +++.+|.+. + +++++|.||++++...
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 4555665 599999999999997654 566666542 2 3689999999998754
No 240
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=81.22 E-value=5.3 Score=39.34 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=23.6
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 126 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~ 126 (368)
+.+++.|+++++++.+++|..+++ |++++|.+
T Consensus 328 ~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~ 359 (467)
T TIGR01318 328 ANAREEGVEFLFNVQPVYIECDED-GRVTGVGL 359 (467)
T ss_pred HHHHhcCCEEEecCCcEEEEECCC-CeEEEEEE
Confidence 446678999999999999976543 66766543
No 241
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=81.06 E-value=53 Score=31.48 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=31.3
Q ss_pred CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.+|+.++||.-+.-.|. .++.-|+.||..||+.|.+.+.
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 37899999988643332 6788899999999999998764
No 242
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=80.98 E-value=5.5 Score=40.38 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=32.1
Q ss_pred CCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccccccCCCCchhHHH
Q 017625 287 SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIPVEEDEPHIEA 345 (368)
Q Consensus 287 ~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~~~~~~~~~~~~~~ 345 (368)
.++||||||+-. |. .+.+-|+.+|..|+-.+...+. +.+..+.+ .++.-+++
T Consensus 356 ~~~gLf~AGqi~--Gt--~Gy~eAaa~Gl~Ag~naa~~~~-~~~~~~l~--r~~~yiGv 407 (617)
T TIGR00136 356 LIQGLFFAGQIN--GT--TGYEEAAAQGLMAGINAALKLQ-NKEPFILK--RSEAYIGV 407 (617)
T ss_pred CCCCeEEccccC--Cc--chHHHHHHHHHHHHHHHHHHhc-CCCCCCCC--cccchHhH
Confidence 479999999955 33 2456777888888766555544 24444444 33443444
No 243
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=80.76 E-value=4.2 Score=39.10 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC--C--eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~a~p~~~l 145 (368)
..|.+.|.+.+.+. |++++.+++|++|..++ +.+. |++. + .+++||.||.|-+....
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAAT-VTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeE-EEEccCCcceEEeeeEEEEeCCCCch
Confidence 34777787777765 79999999999998766 4443 5543 3 36999999999887543
No 244
>PRK12831 putative oxidoreductase; Provisional
Probab=80.63 E-value=4.8 Score=39.61 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=22.7
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 126 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~ 126 (368)
.+++.|++|++++.+++|..+++ |+|++|.+
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~ 357 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKC 357 (464)
T ss_pred HHHHcCCEEEecccceEEEecCC-CeEEEEEE
Confidence 35667999999999999976543 66766543
No 245
>PRK11445 putative oxidoreductase; Provisional
Probab=80.62 E-value=51 Score=30.94 Aligned_cols=54 Identities=11% Similarity=-0.041 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~~~l 145 (368)
+-+.|.+. ...|++++.++.|++|..++ +.+. |+. +|+ +++||.||.|.+....
T Consensus 101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 101 FDLWLKSL-IPASVEVYHNSLCRKIWRED--DGYH-VIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHHHHHH-HhcCCEEEcCCEEEEEEEcC--CEEE-EEEecCCcEEEEEeCEEEECCCCCcH
Confidence 33444443 34689999999999998766 3343 443 353 6899999999998643
No 246
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=80.05 E-value=5.6 Score=38.78 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=41.6
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CCeEEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.+.+.+.+++.|++++++++|++|. + .. |.+ +|+++++|.||++++...
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~--~~---v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAIN--G--NE---VTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEe--C--CE---EEECCCCEEEeCEEEECcCCCc
Confidence 34577788888999999999999999995 2 32 333 467899999999988754
No 247
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=79.97 E-value=2.4 Score=40.32 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=53.2
Q ss_pred cCCcchhhhHHHHH----HHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhHHHhhhhc
Q 017625 81 RGTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNS 152 (368)
Q Consensus 81 ~GG~~~~L~~~l~~----~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l~~ll~~~ 152 (368)
++.|+..|.+.|.+ .+++.|++|+-|+.|+++.... +.+. +.+. |.++..|.||.+++-.--.+|....
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~~s 457 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLV-LKLSDGSELRTDLVVVAVGEEPNSELAEAS 457 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceE-EEecCCCeeeeeeEEEEecCCCchhhcccc
Confidence 46777777777764 5888899999999999998876 5443 5565 7799999999999887666665544
No 248
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.49 E-value=6 Score=40.80 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=28.1
Q ss_pred CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
|..+|+|.+||-+. + + ..+..|+..|+.||..|.+.++
T Consensus 615 Ts~~gVfAaGD~~~-g-~-~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVR-G-A-DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCC-C-C-cHHHHHHHHHHHHHHHHHHHhC
Confidence 45678888888874 2 2 3556788888888888888776
No 249
>PRK07236 hypothetical protein; Provisional
Probab=79.35 E-value=5.1 Score=38.23 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
|.+.|.+.+ .+.+|+++++|++|..++ +.|+ |... |++++||.||.|=+...
T Consensus 102 l~~~L~~~~--~~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 102 LYRALRAAF--PAERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 444444333 246899999999998776 4455 5554 77899999999977644
No 250
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=79.20 E-value=3.2 Score=39.18 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
+...+.+.+++.|++++.+ +|++|..++ .. |.++ |+++.+|++|+|++....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCCC
Confidence 5555666777889999886 799998765 43 4444 668999999999997643
No 251
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=79.05 E-value=3.8 Score=39.88 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CCeEEe--cCEEEEeeChh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 143 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~~~~--ad~VV~a~p~~ 143 (368)
...+.+++.|+++++++.|++|..++ ..|. +.. ++++++ +|++|+|++..
T Consensus 61 ~~~~~~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 61 RTPEEFIKSGIDVKTEHEVVKVDAKN--KTIT-VKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCHHHHHHCCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEEecCCEEEECCCCC
Confidence 33456777899999999999998766 4443 433 245666 99999999985
No 252
>PRK06996 hypothetical protein; Provisional
Probab=79.05 E-value=6.3 Score=37.82 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC---C-eEEecCEEEEeeCh--hhHHHhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K-ETYSAGAVVLAVGI--STLQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g-~~~~ad~VV~a~p~--~~l~~ll 149 (368)
.|.+.|.+.+++.|++++++++|++|..++ ..|+ +.+. | ++++||.||-|-+. ..+.+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~--~~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDA--DGVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecC--CeEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 477888888998899999999999997665 3354 4443 2 48999999999773 3444443
No 253
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=78.94 E-value=4.8 Score=38.81 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.|.+.|.+.+. .+.++++++|++|..++ ++++ |... |++++||.||.|-+....
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQA--EEVQ-VLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecC--CcEE-EEEcCCCEEEeeEEEECCCccHH
Confidence 35666665553 36789999999998766 4443 5544 678999999999888654
No 254
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=78.54 E-value=4.7 Score=38.53 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=37.4
Q ss_pred HHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCC-CCCceEEeccccccCCCCccchHHhHHHHHHHHHH
Q 017625 243 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRV 321 (368)
Q Consensus 243 ~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~I 321 (368)
...+-+..|+++.++++..-+. ..+++. .|- ...+...+ .++||||||+-.. .- |. +-|+.+|..|+..+
T Consensus 314 Q~~~~r~IpGLe~a~~~r~Gy~-~ey~~v--~~~--~l~~~l~~k~~~~lf~AGqi~G--~~-Gy-~eaaa~G~~ag~na 384 (392)
T PF01134_consen 314 QKRIFRSIPGLENAEILRPGYA-HEYDFV--DPP--QLLNTLETKKIPGLFFAGQING--TE-GY-EEAAAQGLIAGINA 384 (392)
T ss_dssp HHHHHTTSTTTTT--EEE--EE-EEEEEE---GG--GBBTTSBBSSSBTEEE-GGGGT--B--SH-HHHHHHHHHHHHHH
T ss_pred HHHHhhcCCChhcChhhheEEe-eeeeEE--ehh--hcccceEECCCCCceECCCCcc--hh-HH-HHHHHHHHHHHHHH
Confidence 3445567899987655432111 111110 011 11123333 4899999999984 32 34 44556888877766
Q ss_pred HHHhC
Q 017625 322 VDYLG 326 (368)
Q Consensus 322 l~~~~ 326 (368)
...+.
T Consensus 385 ~~~~~ 389 (392)
T PF01134_consen 385 ARRLQ 389 (392)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66543
No 255
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=78.46 E-value=6.5 Score=37.48 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
|-..|.+.+.+. |++|+.+++|+++..++ +.++ |++. |.+++||.||.|-+....
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNR-VTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEE-EEECCCCEEEeeEEEEecCCCch
Confidence 445566665553 68999999999998876 4454 5554 679999999999988643
No 256
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=78.38 E-value=7.7 Score=37.11 Aligned_cols=60 Identities=12% Similarity=-0.025 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEe-cCCCceEEEEEE--CCe--EEecCEEEEeeChhh-HHHhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~-~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~~~-l~~ll 149 (368)
.+.+.|.+.+.+.|++++++++|++|.. ++ ..+ .|+. +|+ +++||.||-|=+... +.+.+
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~--~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~ 169 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS--DRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI 169 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC--Cce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence 4667777777778999999999999975 33 323 3444 453 689999999888754 34444
No 257
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=78.07 E-value=88 Score=32.23 Aligned_cols=61 Identities=30% Similarity=0.317 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHcCC--EEeccceeeeEEecCCC-ceEEEEEE-------CC--eEEecCEEEEeeChhh-HHHhh
Q 017625 88 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 88 L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~-g~v~~v~~-------~g--~~~~ad~VV~a~p~~~-l~~ll 149 (368)
+-+.|.+.+++.|+ +++.+++|+++..++++ ..|+ |++ +| ++++||+||-|=+... +.+.+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 55667777777765 78999999999876431 2343 333 24 4799999999988753 44544
No 258
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=8.1 Score=35.73 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=44.3
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
...|.+.+.++.+..|.++.. ..|.++...+ . .-.|.++.++++|++||+|++...-
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGAR 116 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCccc
Confidence 456999999999988999888 7788887654 2 3346776556999999999998643
No 259
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=77.74 E-value=6.6 Score=37.37 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEE---EEECCeEEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD---VVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~---v~~~g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.+.+.++.+|+++++++.|.+|...+ +.+.. +...++.+.+|.|+.+.+...
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG--NTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc--CcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 3588888899999999999999999999776 33332 334477899999999988754
No 260
>PRK05868 hypothetical protein; Validated
Probab=77.68 E-value=6 Score=37.64 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred cCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhh
Q 017625 99 RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 99 ~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll 149 (368)
.|++|+++++|++|..++ ++|+ |... |++++||.||-|=+... +.+.+
T Consensus 117 ~~v~i~~~~~v~~i~~~~--~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDG--DSVR-VTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred CCcEEEeCCEEEEEEecC--CeEE-EEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 589999999999998655 4454 5554 77899999999988754 44544
No 261
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=77.24 E-value=3.9 Score=34.66 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCCceE----EEE---EEC-CeEEecCEEEEeeChh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v----~~v---~~~-g~~~~ad~VV~a~p~~ 143 (368)
.+.+.+.+.+.+++++++|.+|.... +++ ..+ ... +.++.+|+||+|++..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCccc
Confidence 55556677899999999999998776 432 112 222 4579999999999953
No 262
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=77.21 E-value=9.8 Score=33.20 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~~ 144 (368)
.++..|+...-+.|++|+..+.|+.+...++ +||.||..+ | -.++++.||-+++-+.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 3667777666668999999999999998875 789998774 1 2789999999996653
No 263
>PRK06475 salicylate hydroxylase; Provisional
Probab=76.86 E-value=7.7 Score=37.21 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE---CC-eEEecCEEEEeeChhhH-HHhh
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGISTL-QELI 149 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~---~g-~~~~ad~VV~a~p~~~l-~~ll 149 (368)
.|.+.|.+.+.+. |++|+++++|+++..++ ++++ ++. ++ ++++||.||-|=+.... .+.+
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~--~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~ 173 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG--NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKA 173 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC--CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhc
Confidence 5777888877664 78999999999998765 4454 333 33 47899999999888643 4444
No 264
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=76.05 E-value=6.7 Score=38.32 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=48.4
Q ss_pred ecCCcchhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCc-eEEEEEEC---C--eEEecCEEEEeeCh
Q 017625 80 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERC-CISDVVCG---K--ETYSAGAVVLAVGI 142 (368)
Q Consensus 80 ~~GG~~~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g-~v~~v~~~---g--~~~~ad~VV~a~p~ 142 (368)
.+|..++.+..+|.+.+++ .+.+|+.++.+.+|.+++ + .+.||.+. + ..+.++.||+|++-
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 3455567899999999987 589999999999999987 5 55577764 2 36789999998765
No 265
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=75.92 E-value=10 Score=34.28 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEE----CC--eEEecCEEEEeeChh
Q 017625 88 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 88 L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~----~g--~~~~ad~VV~a~p~~ 143 (368)
....+.+.++++ |+++++++.|++|..+ +++..+.. .+ +++.+|.||++++..
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 345566677777 9999999999999753 33444443 13 478999999999864
No 266
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.75 E-value=7.9 Score=36.19 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=46.4
Q ss_pred CcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 83 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 83 G~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
|+-+-+.+-+.++++..|.++|.++.|+++....+ |....+...|....+|.++.|++=.
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 55566777788889999999999999999998776 5444344446555699999998864
No 267
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=74.29 E-value=12 Score=37.61 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHcCC--EEeccceeeeEEecCC---CceEEEEEEC--Ce--EEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEE---RCCISDVVCG--KE--TYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~---~g~v~~v~~~--g~--~~~ad~VV~a~p~~~l 145 (368)
+.+.+-|.+++++.+. .|++||+|++|...+| +|+ |.|++. |+ +..+|+||+|++....
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~-W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGK-WEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETE-EEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCce-EEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 3577888888887765 6999999999987653 143 667665 43 4579999999887543
No 268
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=74.14 E-value=8.7 Score=37.59 Aligned_cols=46 Identities=33% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCCCCCCCceEEeccccccC-CCC-----ccchHHhHHHHHHHHHHHHHhCC
Q 017625 282 MRGFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 282 p~~~~~~~~L~laGd~~~~~-~~~-----~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
...+|.++|||.+|+-.++| ||. .++--+++.|..||+.|..+...
T Consensus 348 ~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~~~ 399 (518)
T COG0029 348 ANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAP 399 (518)
T ss_pred CCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccccc
Confidence 33468899999999988764 443 23333677899999999988644
No 269
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=74.02 E-value=7.9 Score=37.49 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEEC--CeEEe--cCEEEEeeChh
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 143 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~~~~--ad~VV~a~p~~ 143 (368)
.+++.|+++++++.|++|..++ +.+. +..+ ++++. +|+||+|++..
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDER--QTVV-VRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEecCCCEEEECCCCC
Confidence 3477899999999999998765 5443 4333 34677 99999999974
No 270
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=73.79 E-value=32 Score=34.25 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=44.7
Q ss_pred eeecCCcchh-hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC----Ce--EEecCEEEEeeChh
Q 017625 78 VWCRGTLREK-IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 78 ~~~~GG~~~~-L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g~--~~~ad~VV~a~p~~ 143 (368)
.|.+|-.+.+ +.-.++=-.-++|+.+....+|.++..+.+ |+|.|+++. |+ .+.|..||-|+++-
T Consensus 215 VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpf 286 (680)
T KOG0042|consen 215 VYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPF 286 (680)
T ss_pred EEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCc
Confidence 3556643332 222232224567999999999999999876 777776653 55 57899999999884
No 271
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.93 E-value=14 Score=36.38 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=41.6
Q ss_pred chhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-C--C--eEEecCEEEEeeChhh
Q 017625 85 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 85 ~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~--g--~~~~ad~VV~a~p~~~ 144 (368)
...+.+.+.+.+++. ++|++++.|++|..++ +.+. +.+ + + +++++|.||++++...
T Consensus 214 d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 214 DKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIY-VTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred CHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEE-EEEEeCCCcceEEEeCEEEEeecccc
Confidence 345677777888888 9999999999998765 4343 443 2 2 3699999999998753
No 272
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=72.71 E-value=14 Score=32.42 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C-----eEEecCEEEEeeChh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIS 143 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g-----~~~~ad~VV~a~p~~ 143 (368)
++..|+...-+.|++|+.++.|+.+.+.++ .+|.||..+ + -+++++.||-+++-+
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 666666666678999999999999998873 378888764 1 246677777766654
No 273
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=72.57 E-value=5.5 Score=42.37 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 92 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 92 l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
..+.++++|++++++++|++|..+. . + |.++ |+++.+|++|+|++..
T Consensus 65 ~~~~~~~~gI~~~~g~~V~~Id~~~--~-~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 65 REGFYEKHGIKVLVGERAITINRQE--K-V--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred CHHHHHhCCCEEEcCCEEEEEeCCC--c-E--EEECCCcEEECCEEEECCCCC
Confidence 3455678899999999999997654 3 2 4444 6689999999999975
No 274
>PRK06753 hypothetical protein; Provisional
Probab=72.51 E-value=11 Score=35.70 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh-HHHhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST-LQELI 149 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~-l~~ll 149 (368)
|.+.|.+.++ +.+|+++++|++|..++ ++++ |++. |+++.+|.||-|-+... +.+.+
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET--DKVT-IHFADGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC--CcEE-EEECCCCEEecCEEEECCCcchHHHHHh
Confidence 4455544443 46899999999998665 5554 5554 77899999999988754 33443
No 275
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=72.46 E-value=4.2 Score=41.61 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
.|.+.+++.|.++++++.+++|.- + +++.+++.. |..+.||.||.++...-
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g-~--~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG-E--DKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc-C--cceeeEeecCCCcccceeEEEeccccc
Confidence 455667888999999999999976 3 567888876 67899999999998853
No 276
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.19 E-value=13 Score=40.05 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHc----CCEEeccceeeeEEecCCCceEEEEEE-C---Ce--EEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC-G---KE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~----G~~i~~~t~V~~I~~~~~~g~v~~v~~-~---g~--~~~ad~VV~a~p~~ 143 (368)
..+...|.+.+++. ++++..++.+.++..++ |+|.||.. + |+ .+.|+.||+|++-.
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 204 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPC 204 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCcc
Confidence 45778888887655 45677777777887765 88888764 2 54 47999999999874
No 277
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.42 E-value=13 Score=37.63 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
.+.+.+.+.+++.|++++ +++|+.|..++ . +..|.+.++.+.+|+||+|++..
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCc
Confidence 577888888888899985 77899998754 3 34466665678999999999985
No 278
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.98 E-value=13 Score=38.18 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=21.9
Q ss_pred HHHcCCEEeccceeeeEEecCCCceEEEEE
Q 017625 96 MRTRGCEFLDGRRVTDFIYDEERCCISDVV 125 (368)
Q Consensus 96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~ 125 (368)
+++.|++|++++.+++|..+++ |+|++|.
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~ 527 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDED-GRLTAVG 527 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCC-CeEEEEE
Confidence 4567999999999999976544 6676654
No 279
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=70.73 E-value=13 Score=36.25 Aligned_cols=58 Identities=9% Similarity=0.145 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHcC---CEEeccceeeeEEec-----CCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G---~~i~~~t~V~~I~~~-----~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.|.+.|.+.+++.+ ++++++++|++|..+ ++...|+ |++. |++++||.||-|=+....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~-v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH-ITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE-EEEcCCCEEEeeEEEEecCCCCh
Confidence 46677888887765 899999999999753 1112343 5554 779999999999888643
No 280
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.56 E-value=12 Score=37.32 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=38.4
Q ss_pred HHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChhh
Q 017625 91 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 91 ~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~~ 144 (368)
.+.+.+.+ .|++|++++.|++|.-++ +++.++.+. | +++.+|.|+.+++...
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 34455555 599999999999998654 666666542 3 3689999999988853
No 281
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=69.84 E-value=17 Score=35.59 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-CC--eEEecCEEEEeeChh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-~g--~~~~ad~VV~a~p~~ 143 (368)
..+.+.+.+.+++. ++|+++++|++|..+++ .+++ ++. ++ +++++|.||++++..
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 34667777788888 99999999999976542 2343 222 23 479999999998764
No 282
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=69.46 E-value=19 Score=36.61 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCC-CCCceEEeccccccCCCCccchHHhHHHHHH
Q 017625 243 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 317 (368)
Q Consensus 243 ~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~~~~~egA~~Sg~~a 317 (368)
...+-+..|++..++++..-.. ..+++- .|.. ..+...+ .++||||||.-.. .. |..|+| .+|+.|
T Consensus 318 Q~~~~r~ipGle~a~i~r~gy~-ieyd~i--~p~~--L~~~Le~k~~~~lf~AGQinG--t~-GYeEaa-aqGl~A 384 (618)
T PRK05192 318 QLEMLRSIPGLENAEILRPGYA-IEYDYV--DPRQ--LKPTLETKKIKGLFFAGQING--TT-GYEEAA-AQGLIA 384 (618)
T ss_pred HHHHHhcCcCccceeEeecccc-eeeccc--Chhh--cchhheecCCCCeEECcccCC--Ch-HHHHHH-HHHHHH
Confidence 3345567889886554321110 112111 1221 2233333 5799999998874 32 454544 444444
No 283
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=68.62 E-value=14 Score=38.93 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 126 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~ 126 (368)
+.+++.|++|++++.+.+|..+++ |++++|.+
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~ 647 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVL 647 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC-CEEEEEEE
Confidence 346778999999999999976543 67766654
No 284
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.20 E-value=13 Score=36.31 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=33.9
Q ss_pred HHHcCCEEeccceeeeEEecCCCceEEEEEEC--Ce--EEecCEEEEeeChhh
Q 017625 96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g~--~~~ad~VV~a~p~~~ 144 (368)
.++.|.+++++++|++|..++ ..|. +... ++ ++.+|++|+|++...
T Consensus 68 ~~~~~i~v~~~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 68 YDRKQITVKTYHEVIAINDER--QTVT-VLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HHhCCCEEEeCCEEEEEECCC--CEEE-EEECCCCcEEeeecCEEEECCCCCC
Confidence 355799999999999998766 5443 3332 23 468999999999854
No 285
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=67.88 E-value=18 Score=39.31 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-----CeEEecCEEEEeeChhhHHHh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQEL 148 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-----g~~~~ad~VV~a~p~~~l~~l 148 (368)
+...+.+.++++|++|++++.|++|.-+ +++.+|++. ++++.+|.|+++.+...-..|
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 4556677788999999999999999643 335555432 357899999999887544334
No 286
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=67.22 E-value=6.8 Score=35.18 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=28.5
Q ss_pred CCceEEeccccccCCC---C-ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHG---S-WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~---~-~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.||||.+|-..+.-++ + ..+-|-+.||+.||+.|+++++
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 5999999987753222 1 3444556899999999999874
No 287
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.86 E-value=14 Score=35.39 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.7
Q ss_pred CcchhhhHHHHHHHH--Hc-----CCEEeccceeeeEEecCCCceEEEEEEC----C--eEEecCEEEEeeChh
Q 017625 83 TLREKIFEPWMDSMR--TR-----GCEFLDGRRVTDFIYDEERCCISDVVCG----K--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 83 G~~~~L~~~l~~~l~--~~-----G~~i~~~t~V~~I~~~~~~g~v~~v~~~----g--~~~~ad~VV~a~p~~ 143 (368)
|.+..+++.|.+.+- +. .++++.++.|++++..++ |++ .+.+. | ++++.|.||+|++..
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-GRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-ceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 445567777776642 22 358999999999999886 764 34442 3 478999999999987
No 288
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=66.71 E-value=6.6 Score=35.28 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCceEEeccccccCCC---C-ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHG---S-WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~---~-~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.||||.+|-....-++ + ..+-|-+.||+.||+.|+++++
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence 5999999977753222 1 3444557899999999999986
No 289
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=66.45 E-value=5.6 Score=34.74 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCceEEeccccccCCC---C-ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHG---S-WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~---~-~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.||||.||-.++.-|+ + ...-|-+.||..||+.|+++++
T Consensus 218 ~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 218 YPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhh
Confidence 5899999987753222 1 3444567899999999999986
No 290
>PRK13984 putative oxidoreductase; Provisional
Probab=66.32 E-value=17 Score=37.14 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=20.6
Q ss_pred HHcCCEEeccceeeeEEecCCCceEEEEEE
Q 017625 97 RTRGCEFLDGRRVTDFIYDEERCCISDVVC 126 (368)
Q Consensus 97 ~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~ 126 (368)
.+.|++|++++.+++|..++ |++++|.+
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~--g~v~~v~~ 500 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIEN--DKVKGVKF 500 (604)
T ss_pred HHcCCEEEeCCCCEEEEccC--CEEEEEEE
Confidence 35699999999998886544 66776654
No 291
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=65.47 E-value=20 Score=34.88 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=42.1
Q ss_pred HHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCC-CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHH
Q 017625 244 SYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 322 (368)
Q Consensus 244 ~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~-~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il 322 (368)
..+-++.|+++.++++.+-+. .++++-. .|.. ..+... ..++||||||.-+. .- |+.| |+.+|+.|+-...
T Consensus 288 ~~~~r~ipgle~a~~~r~g~~-~~~~~i~-~p~~--L~~~l~~k~~~~lf~AGQi~G--~~-GY~E-aaa~Gl~agina~ 359 (433)
T TIGR00137 288 KRVFRLIPGLENAEFVRMGVM-HRNTFIN-SPQL--LTASLHFKDRQTLFFAGQLTG--VE-GYVA-STAGGWLAGINAA 359 (433)
T ss_pred HHHHhcCcCccceEEeecceE-EeeeeeC-CHHH--hhHHhccCCCCCEEECccccc--ch-HHHH-HHHHHHHHHHHHH
Confidence 344567899987665432221 1122110 0111 112222 35799999999884 32 4544 4456666655555
Q ss_pred HHhCCCCcccccc
Q 017625 323 DYLGDGSFSKIIP 335 (368)
Q Consensus 323 ~~~~~~~~~~~~~ 335 (368)
..+. +.+..+.|
T Consensus 360 ~~~~-~~~~~~~~ 371 (433)
T TIGR00137 360 RLAL-GEPLLTLP 371 (433)
T ss_pred HHHc-CCCCCCCC
Confidence 4443 24445455
No 292
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=64.88 E-value=13 Score=35.06 Aligned_cols=53 Identities=26% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCCCc-eEEEEEE-----CCeEEecCEEEEeeCh
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGI 142 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g-~v~~v~~-----~g~~~~ad~VV~a~p~ 142 (368)
+-+.-.+++.+..++.+++|++|...++.+ ..+.|.+ +++++.|+.||++++.
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 333333445555699999999999876311 3456776 2458999999999884
No 293
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=64.73 E-value=12 Score=37.68 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHcCCEEeccceeeeEEecCCCceEEEEEEC--C----e-EEecCEEEEeeChhhHHHhhh
Q 017625 96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--K----E-TYSAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~--g----~-~~~ad~VV~a~p~~~l~~ll~ 150 (368)
.++.+.+|++++.|++|..++ +++++|... + + .+.++.||+++..-...+|+-
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~ 272 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLL 272 (542)
T ss_pred hcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHH
Confidence 344468999999999999998 677777653 2 2 257788999988876666543
No 294
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=64.08 E-value=8.9 Score=38.07 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=37.5
Q ss_pred HHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhh
Q 017625 90 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 144 (368)
Q Consensus 90 ~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~ 144 (368)
..+.+.++.. +.+|+-+ .|++|..+++ .+|++|.+. |..+.|+.||+|++...
T Consensus 104 ~~mk~~le~~~NL~l~q~-~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 104 RAMKNELENQPNLHLLQG-EVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred HHHHHHHhcCCCceehHh-hhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccc
Confidence 3444445543 4555544 7788888662 368999887 77999999999998754
No 295
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=63.75 E-value=31 Score=35.66 Aligned_cols=58 Identities=3% Similarity=-0.019 Sum_probs=39.8
Q ss_pred hhhhHHHHHHH-HHcCCEEeccceeeeEEecCCCce-EEEEEEC----C------------eEEecCEEEEeeChhhH
Q 017625 86 EKIFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCC-ISDVVCG----K------------ETYSAGAVVLAVGISTL 145 (368)
Q Consensus 86 ~~L~~~l~~~l-~~~G~~i~~~t~V~~I~~~~~~g~-v~~v~~~----g------------~~~~ad~VV~a~p~~~l 145 (368)
..+.+.+.+.+ ++.|++|++++.|++|..+++ ++ +. +.+. + +++++|.||++++...-
T Consensus 353 ~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~-~~~v~-v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 353 ADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG-NQPVI-IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEE-EEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 34556666654 578999999999999986542 32 32 3221 1 26999999999987543
No 296
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=62.92 E-value=27 Score=34.12 Aligned_cols=57 Identities=25% Similarity=0.151 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC-CeE--EecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~--~~ad~VV~a~p~~~l 145 (368)
+-+-+...++..+. +|+.+++|+.+..+.+ ++.|.|+++ |.+ ++||.||+|++....
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~ 145 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHLSE 145 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence 66777777887764 6999999999888876 546778776 333 669999999998543
No 297
>PRK10262 thioredoxin reductase; Provisional
Probab=62.71 E-value=28 Score=32.10 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
.+.+.+.+.+...+.+++.+ .|++|...+ +.+ .+..+.+.+.+|+||+|++...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~-~v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN--RPF-RLTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC--CeE-EEEecCCEEEECEEEECCCCCC
Confidence 35677777777778888876 577887765 543 3444445789999999999863
No 298
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.54 E-value=23 Score=33.24 Aligned_cols=50 Identities=24% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE-------------------C--CeEEecCEEEEeeCh
Q 017625 90 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------G--KETYSAGAVVLAVGI 142 (368)
Q Consensus 90 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-------------------~--g~~~~ad~VV~a~p~ 142 (368)
..+.+.++++|++|++++.|++|.-+ +++..|.. . +.++.+|.||++++.
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE---GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC---CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 44456688889999999999998643 23433332 1 235777777777665
No 299
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=62.21 E-value=11 Score=38.71 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.++..--..++++|++++++.+|+.|..++ + .|.++ |.++.+|..|+|+....+
T Consensus 60 di~l~~~dwy~~~~i~L~~~~~v~~idr~~---k--~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 60 DISLNRNDWYEENGITLYTGEKVIQIDRAN---K--VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HHhccchhhHHHcCcEEEcCCeeEEeccCc---c--eEEccCCcEeecceeEEecCcccc
Confidence 344444456789999999999999998765 3 24555 789999999999887654
No 300
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.96 E-value=9.3 Score=41.54 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=34.0
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
..|..+|+|.+||-+. + + ..+-.|+..|+.||..|.+.+..
T Consensus 716 ~~Ts~pgVFAaGDv~~-G-~-~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT-G-G-ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred cCCCCCCEEEecCcCC-C-c-cHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577899999999985 2 2 46678999999999999999875
No 301
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.81 E-value=21 Score=38.87 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHHcCCEEeccceeeeEEecCCCceEEEEEEC------------------C--eEEecCEEEEeeChh
Q 017625 94 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------------K--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 94 ~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~------------------g--~~~~ad~VV~a~p~~ 143 (368)
+.+++.|++|++++.+++|..+++ |+|++|.+. | .++++|.||++++..
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 356678999999999999976544 777776431 1 258999999999864
No 302
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.73 E-value=11 Score=38.79 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHcCCEEeccceeee-EEecCCCceEEEEEECCeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTD-FIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~-I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l 145 (368)
+.+...+.+++.|+++++++.|.. |..+. ....+|+||++++....
T Consensus 379 ~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~~------------~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 379 LLARRREIFSAMGIEFELNCEVGKDISLES------------LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHHHHHHCCeEEECCCEeCCcCCHHH------------HHhcCCEEEEeCCCCCC
Confidence 444455667788899998887631 11111 12368999999987543
No 303
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=61.10 E-value=13 Score=36.07 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
+....-+.+++.|.++++++.|+++.... ..+ +..+|+++.+++.|+|++..
T Consensus 129 ~a~r~~e~Yke~gIe~~~~t~v~~~D~~~--K~l--~~~~Ge~~kys~LilATGs~ 180 (478)
T KOG1336|consen 129 LAKRTPEFYKEKGIELILGTSVVKADLAS--KTL--VLGNGETLKYSKLIIATGSS 180 (478)
T ss_pred ccccChhhHhhcCceEEEcceeEEeeccc--cEE--EeCCCceeecceEEEeecCc
Confidence 44455567889999999999999999876 422 33448899999999999983
No 304
>PLN02785 Protein HOTHEAD
Probab=60.46 E-value=21 Score=36.35 Aligned_cols=60 Identities=10% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCEEeccceeeeEEecCCC--ceEEEEEEC---CeEE-------ecCEEEEeeChhhHHHhhh
Q 017625 91 PWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCG---KETY-------SAGAVVLAVGISTLQELIK 150 (368)
Q Consensus 91 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~--g~v~~v~~~---g~~~-------~ad~VV~a~p~~~l~~ll~ 150 (368)
.+....+..+.+|++++.|++|..++++ ++++||+.. |.+. ...-||++++.-...+||-
T Consensus 225 ~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~ 296 (587)
T PLN02785 225 ELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLL 296 (587)
T ss_pred HHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHH
Confidence 3434445567999999999999987521 278898862 4322 1356888887755555543
No 305
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=60.28 E-value=13 Score=37.68 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHHhCCCC
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLGDGS 329 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~~~~~~ 329 (368)
.+++|||.||..+.. .|+. .++-.|+++|++|++.+.+.....+
T Consensus 505 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~ 554 (557)
T PRK12844 505 SVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADP 554 (557)
T ss_pred CCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCC
Confidence 589999999986532 2321 3567789999999999988766433
No 306
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=60.15 E-value=11 Score=35.98 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=27.6
Q ss_pred CCCceEEecccccc--CCCCccchHHhHHHHHHHHHHHHH
Q 017625 287 SFPNLFMAGDWITT--RHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 287 ~~~~L~laGd~~~~--~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.++||||||+-+.- .-|+-.+.-|..||+.|++.+.+-
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 57999999987742 111124677999999999887653
No 307
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=60.11 E-value=27 Score=33.38 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--CCe--EEecCEEEEeeChhh-HHHhhh
Q 017625 86 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 150 (368)
Q Consensus 86 ~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~g~--~~~ad~VV~a~p~~~-l~~ll~ 150 (368)
..|...|.+.+.+.|+++++++.++++...++ ..+ .|++ +|+ +++||.||-|=+... +.+.++
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~-~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAG-DRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC-Ccc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 35677788888888999999999888864221 222 2444 454 689999998888754 444443
No 308
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=59.57 E-value=25 Score=32.85 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHH---cC-CEEeccceeeeEEecCCCceEEEEEEC------------------Ce-EEecCEEEEeeC
Q 017625 86 EKIFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVCG------------------KE-TYSAGAVVLAVG 141 (368)
Q Consensus 86 ~~L~~~l~~~l~~---~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~------------------g~-~~~ad~VV~a~p 141 (368)
..+.+++++.+++ .| +++++.++|.++...+ |+|++|+-+ |+ +++|..||++..
T Consensus 149 Pgvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 149 PGVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred cchhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 4578888887765 33 7899999999999998 888887521 23 467888888854
No 309
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=59.04 E-value=26 Score=35.81 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=30.0
Q ss_pred CCCCCCCceEEeccccccCCCC-----ccchHHhHHHHHHHHHHHHH
Q 017625 283 RGFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~~~~~-----~~~egA~~Sg~~aA~~Il~~ 324 (368)
...|.++|||.||+....-||. .++-.++..|+.|++.+.+.
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999975333432 34566788899998887764
No 310
>PRK12831 putative oxidoreductase; Provisional
Probab=58.56 E-value=13 Score=36.53 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..|..+|+|.+||-+. +. ..+..|+..|+.||..|.+.+.
T Consensus 422 ~~Ts~pgVfAaGD~~~-g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 422 GLTSKEGVFAGGDAVT-GA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CccCCCCEEEeCCCCC-Cc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999885 22 3667899999999999988875
No 311
>PRK07538 hypothetical protein; Provisional
Probab=58.42 E-value=35 Score=32.84 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=40.6
Q ss_pred hhHHHHHHHHH-cCC-EEeccceeeeEEecCCCceEEEEEEC--C--eEEecCEEEEeeChhhH-HHhh
Q 017625 88 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL-QELI 149 (368)
Q Consensus 88 L~~~l~~~l~~-~G~-~i~~~t~V~~I~~~~~~g~v~~v~~~--g--~~~~ad~VV~a~p~~~l-~~ll 149 (368)
|-+.|.+.+.+ .|. +|+++++|+++..+++ +.+..+... | ++++||.||-|-+.... .+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 55667766654 464 6999999999987664 423223221 2 37999999999888643 3443
No 312
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=58.05 E-value=26 Score=34.15 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 144 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~ 144 (368)
+.+.+.+.+++.|++++.+ +|+.+. . ..+. +..+|+.+++|+||+|++...
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~--~--~~v~-v~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVG--P--NTVE-VLQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEec--C--CEEE-EecCCeEEEcCEEEEecCCcC
Confidence 4455556677889999887 566553 2 3332 334567899999999999753
No 313
>PLN02661 Putative thiazole synthesis
Probab=57.49 E-value=12 Score=35.25 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCceEEeccccccCCC---C-ccchHHhHHHHHHHHHHHHHhC
Q 017625 288 FPNLFMAGDWITTRHG---S-WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~---~-~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.||||.+|-.+..-++ + ..+-|-+.||+.||+.|+++++
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 5999999987753221 1 3444567899999999999998
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.66 E-value=33 Score=34.71 Aligned_cols=48 Identities=27% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHcCCEEeccceeeeEEecCCCceEEEEEE-----------------CC--eEEecCEEEEeeChhh
Q 017625 95 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 95 ~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~-----------------~g--~~~~ad~VV~a~p~~~ 144 (368)
.+.+.|++|++++.+++|..+++ +.+ ++.+ .| .++++|.||++++...
T Consensus 314 ~a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 314 EALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HHHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCC
Confidence 34567999999999999976543 432 4321 12 2689999999998643
No 315
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.43 E-value=26 Score=34.01 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCCCceEEecccccc---CCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT---RHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~---~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
+..+|+|.+||.... .++ .....|...|..+|+.|.+.+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~-~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLP-TLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCC-CchHHHHHHHHHHHHHHHHHhc
Confidence 467999999998852 123 2445688999999999999875
No 316
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=55.06 E-value=20 Score=35.75 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=27.1
Q ss_pred HHHHHhhhccCCCCCceeeeEEeecCCCccc-cCCCCcCCCCCCCC-CCCceEEecccc
Q 017625 242 AVSYLSKCIKDFSTATVMDHKIRRFPKSLTH-FFPGSYKYMMRGFT-SFPNLFMAGDWI 298 (368)
Q Consensus 242 ~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~-~~pg~~~~~p~~~~-~~~~L~laGd~~ 298 (368)
+..++-+-.|++..+++ .+.-+++.. +. ......|...+ .++||||||.--
T Consensus 317 VQ~~~irsipGlEna~i-----~rpgYAIEYD~v-~p~qL~~tLEtK~I~GLf~AGQIN 369 (621)
T COG0445 317 VQEQIIRSIPGLENAEI-----LRPGYAIEYDYV-DPRQLKPTLETKKIKGLFFAGQIN 369 (621)
T ss_pred HHHHHHHhCccccccee-----eccceeeeeccc-ChhhcccchhhceecceEEccccc
Confidence 44455566788876443 333333221 11 11112344444 579999999765
No 317
>PRK06175 L-aspartate oxidase; Provisional
Probab=54.89 E-value=35 Score=33.22 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 283 RGFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..+++++|||-||+.+. .-|+. .++-.++..|++|++.+.....
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~ 388 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID 388 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34479999999999864 22321 3456678999999999876553
No 318
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=54.10 E-value=18 Score=35.41 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=30.0
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHh
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
.|..+|+|.+||.+. +. ..+..|+..|+.||..|.+.+
T Consensus 412 ~Ts~~~VfA~GD~~~-g~--~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 412 RTSIPGVFAGGDIIL-GA--ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred ccCCCCEEEecCCCC-Cc--HHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999985 22 356678999999999987653
No 319
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=53.79 E-value=22 Score=35.05 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.|..+++|.+||-..+ . ..+..|+..|+.||..|.+.++
T Consensus 428 ~T~~~gVfa~GD~~~~-~--~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRG-A--DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred cCCCCCEEEECCcCCC-c--cHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999852 2 2456799999999999988775
No 320
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.76 E-value=17 Score=36.66 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCCCCCceEEeccccccCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..++++|||.||+.+..-|+. .++-.|+.+|+.|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 347999999999976422331 345568889999999987654
No 321
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.89 E-value=18 Score=35.62 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=32.1
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.|..+|+|.+||.+. +. ..+..|+..|+.||..|.+.+.
T Consensus 427 ~Ts~~gVfa~GD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 427 QTSNPKVFAAGDMRR-GQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred cCCCCCEEEccccCC-Cc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999986 22 2456799999999999999886
No 322
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=51.57 E-value=17 Score=34.69 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=27.1
Q ss_pred CCCceEEecccccc-CCC-CccchHHhHHHHHHHHHHHHH
Q 017625 287 SFPNLFMAGDWITT-RHG-SWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 287 ~~~~L~laGd~~~~-~~~-~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|||||||+-+.- +|- +-.+..|..||..|++.+...
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~ 406 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAW 406 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 68999999975531 111 124677999999999988764
No 323
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=50.99 E-value=50 Score=32.48 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+|+|.+||-+. .++ ....|...|..||+.|+..
T Consensus 300 ~~Ts~~~IyA~GD~~~-~~~--l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 300 SRTSVPGIYAAGDCTG-VLP--LASVAAMQGRIAMYHALGE 337 (466)
T ss_pred cccCCCCEEEEeeccC-Ccc--chhHHHHHHHHHHHHHcCC
Confidence 3567899999999995 233 4566888999999999853
No 324
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=50.75 E-value=23 Score=33.33 Aligned_cols=39 Identities=31% Similarity=0.429 Sum_probs=30.7
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.+..+++|.+||.+. .+ ..+..|+..|..||..|.+.+.
T Consensus 312 ~t~~~~vyaiGD~~~--~~-~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 312 MTSREGVFAAGDVVT--GP-SKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ccCCCCEEEEccccc--Cc-chHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999885 23 3567789999999999988764
No 325
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=50.03 E-value=8.9 Score=35.44 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHhhhcCCchhhhHHHHHHHHHHHHhhcCCC--cceeeecCCcchhhhHHHHHHHHHcCCEEeccce
Q 017625 31 CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN--FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRR 108 (368)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~~l~~~~~~~~~~--~~~~~~~GG~~~~L~~~l~~~l~~~G~~i~~~t~ 108 (368)
+++.+++.++.+++.-.|+.+|+++++..+..+=..+...+.-. --.+.|++|+ .++.+.| +.+...+|++||.
T Consensus 142 vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GY-T~~~~kM---l~hp~I~V~Lntd 217 (374)
T COG0562 142 VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGY-TAMFEKM---LDHPNIDVRLNTD 217 (374)
T ss_pred HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccH-HHHHHHH---hcCCCceEEecCc
Confidence 56778999999999999999999999977554311111011100 1113678884 5565555 4566789999988
Q ss_pred eeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHh
Q 017625 109 VTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 148 (368)
Q Consensus 109 V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~l 148 (368)
-..+.... . .+.+..||.|.|++.....
T Consensus 218 ~~~~~~~~--~----------~~~~~~VvytG~iD~~Fdy 245 (374)
T COG0562 218 FFDVKDQL--R----------AIPFAPVVYTGPIDAYFDY 245 (374)
T ss_pred HHHHhhhh--c----------ccCCCceEEecchHhhhcc
Confidence 77765332 1 1356689999999887654
No 326
>PRK12839 hypothetical protein; Provisional
Probab=49.95 E-value=20 Score=36.39 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=30.9
Q ss_pred CCCCceEEecccccc----CCC--CccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT----RHG--SWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~--~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.+|+|||.||+.+.. .|+ ..++-.|+.+|++|++.+.+.-+
T Consensus 523 ~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 523 TPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 589999999986532 232 14566789999999999987765
No 327
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=48.77 E-value=24 Score=34.92 Aligned_cols=43 Identities=33% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCCCCCCceEEecccccc-CCC-----CccchHHhHHHHHHHHHHHHHh
Q 017625 283 RGFTSFPNLFMAGDWITT-RHG-----SWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~-~~~-----~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
...++++|||.||+.... -|+ ..++-.|+..|+.|++.+.+..
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 389 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRRP 389 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 345789999999998632 232 1345668899999999987653
No 328
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=48.57 E-value=25 Score=35.58 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
|+++|||.||+-... .|+. .++-.|+.+|++|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 789999999997642 2431 356678899999999987654
No 329
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=47.89 E-value=23 Score=38.47 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.8
Q ss_pred CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 286 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
|..+++|.|||.+. . ..+..|+..|..||..|..+++.
T Consensus 436 t~v~gVyaaGD~~g--~--~~~~~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 436 DAVQGCILAGAANG--L--FGLAAALADGAAAGAAAARAAGF 473 (985)
T ss_pred CCCCCeEEeeccCC--c--cCHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999773 3 35677999999999999999985
No 330
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=47.68 E-value=25 Score=35.63 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=30.6
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||..+.. .|+. .++-.|+.+|++|++.+.+...
T Consensus 522 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 522 TPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 589999999976532 2321 3466689999999999987765
No 331
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=47.64 E-value=27 Score=35.47 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCCCCCceEEeccccccC-CCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 283 RGFTSFPNLFMAGDWITTR-HGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~~-~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
...|+++|||.||+....| |+. .++-.|+..|+.|++.+.....
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999875322 432 3556688899999999876543
No 332
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.31 E-value=58 Score=35.28 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=34.1
Q ss_pred HHHcCCEEeccceeeeEEecCCCceEEEEEE------------------CC--eEEecCEEEEeeChh
Q 017625 96 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 143 (368)
Q Consensus 96 l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~------------------~g--~~~~ad~VV~a~p~~ 143 (368)
..+.|++++.++.+++|..+++.++|+++.+ .| .++.||.||+|++..
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 3457999999999999976532145655432 12 258999999998864
No 333
>PRK07121 hypothetical protein; Validated
Probab=47.21 E-value=24 Score=34.91 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=28.7
Q ss_pred CCCCceEEecccccc----CC-CCccchHHhHHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT----RH-GSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~-~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+++|||.||+.... .| +..++-.|+.+|+.|++.+.+.
T Consensus 447 ~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 447 APIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 589999999987532 12 1145666899999999988764
No 334
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=47.01 E-value=24 Score=36.30 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.|..+++|.+||-+. + + ..+..|+..|+.||..|.+.+.
T Consensus 597 ~Ts~~gVfA~GD~~~-g-~-~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 597 QTHLKKVFAGGDAVH-G-A-DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred ccCCCCEEEcCCCCC-C-c-hHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999885 2 2 3567799999999999998875
No 335
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=46.45 E-value=26 Score=35.67 Aligned_cols=42 Identities=31% Similarity=0.481 Sum_probs=30.1
Q ss_pred CCCCCCceEEeccccccCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..|+++|||.||+....-|+. .++-.|+..|+.|++.+.+..
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 457899999999976433332 245568888998888876553
No 336
>PRK13984 putative oxidoreductase; Provisional
Probab=46.27 E-value=26 Score=35.80 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=30.8
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..|..+++|.+||-+.. + .+-.|+..|+.||..|.+.+.
T Consensus 564 ~~Ts~~gVfAaGD~~~~--~--~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHG--P--DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CccCCCCEEEecCcCCc--h--HHHHHHHHHHHHHHHHHHHhc
Confidence 35678999999999852 2 235689999999999988764
No 337
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.89 E-value=25 Score=34.87 Aligned_cols=39 Identities=33% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.|..+|+|.+||-+. +. ..+..|+..|+.||..|.+.+.
T Consensus 441 ~Ts~~gVfAaGD~~~-g~--~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 441 STSIPGVFAAGDCRR-GQ--SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred eECCCCEEEeeccCC-Cc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999885 22 3456689999999999998875
No 338
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.83 E-value=26 Score=34.34 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..|..+++|.+||... +. ..+..|+..|..||..|.+.+.
T Consensus 413 ~~Ts~~~VfA~GD~~~-~~--~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVT-GA--ATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCC-Cc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 3466899999999884 22 3556799999999999998876
No 339
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=45.66 E-value=29 Score=37.69 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=32.4
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.|..+|+|.+||... .+ ..+..|+..|+.||..|++..+.
T Consensus 802 ~Ts~pgVFAaGD~a~--GP-~tVv~AIaqGr~AA~nIl~~~~~ 841 (1012)
T TIGR03315 802 ETNITNVFVIGDANR--GP-ATIVEAIADGRKAANAILSREGL 841 (1012)
T ss_pred ccCCCCEEEEeCcCC--Cc-cHHHHHHHHHHHHHHHHhccccC
Confidence 467899999999874 23 46788999999999999976654
No 340
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.47 E-value=54 Score=32.50 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHcCCE-EeccceeeeEEecCCCceEEEEEE---------CC-----------eEEecCEEEEeeCh
Q 017625 96 MRTRGCE-FLDGRRVTDFIYDEERCCISDVVC---------GK-----------ETYSAGAVVLAVGI 142 (368)
Q Consensus 96 l~~~G~~-i~~~t~V~~I~~~~~~g~v~~v~~---------~g-----------~~~~ad~VV~a~p~ 142 (368)
++..|++ +++++.+++|.-+++ |+|++|.+ +| .++++|.||++++.
T Consensus 346 ~~~~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 346 AAHYGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred hhhcCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3334654 457888888865433 56776653 12 26899999999885
No 341
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=45.36 E-value=57 Score=31.88 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
..|..+|+|.+||.+.. + ....-|...|+.+|+.|+.
T Consensus 291 ~~T~~p~IyAiGD~~~~-~--~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGK-V--ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCC-c--ccHHHHHHHHHHHHHHHhc
Confidence 34678999999999852 3 3456788999999999984
No 342
>PLN02546 glutathione reductase
Probab=45.18 E-value=48 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=29.2
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+|+|.+||-+.. .+ ...-|...|..+|+.|+..
T Consensus 376 l~Ts~p~IYAaGDv~~~-~~--l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDR-IN--LTPVALMEGGALAKTLFGN 413 (558)
T ss_pred ceeCCCCEEEeeccCCC-cc--cHHHHHHHHHHHHHHHcCC
Confidence 35678999999999952 32 4556888899999998753
No 343
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=45.02 E-value=25 Score=35.63 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||+-.. ..|+. .++-.|+.+|++|++.+.+...
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 68999999999864 22432 2456788999999999876543
No 344
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.86 E-value=28 Score=37.59 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCCCCccc
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSK 332 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~~~~~~ 332 (368)
.|..+|+|.+||-..+ . ..+--|+..|+.||..|.+.++.....+
T Consensus 589 ~Ts~pgVFAaGD~~~G-~--~~vv~Ai~eGr~AA~~I~~~L~~~~~~~ 633 (944)
T PRK12779 589 RTSIKGVYSGGDAARG-G--STAIRAAGDGQAAAKEIVGEIPFTPAEI 633 (944)
T ss_pred ccCCCCEEEEEcCCCC-h--HHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 4678999999999862 2 3677799999999999999988654444
No 345
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=44.55 E-value=28 Score=35.40 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..|+++|||.||+-... -|+. .++-.|+..|++|++.+.+...
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 35789999999997532 2331 3456688899999998877653
No 346
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=43.90 E-value=27 Score=33.88 Aligned_cols=39 Identities=21% Similarity=0.070 Sum_probs=27.6
Q ss_pred CCCCceEEecccccc-----CCC-CccchHHhHHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT-----RHG-SWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-----~~~-~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.|++|||.||+.+.. .|. ..++-.|+..|++|++.+.+.
T Consensus 385 ~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 385 VAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 589999999975421 121 134566889999999988664
No 347
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=43.13 E-value=24 Score=35.70 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~ 323 (368)
.+++|||.||..+.. .|+. .++-.|+..|++|++.+.+
T Consensus 520 ~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 520 SVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 589999999977632 2331 3566788999999998754
No 348
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=42.90 E-value=24 Score=35.55 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCCceEEeccccc------cCC---CCccchHHhHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWIT------TRH---GSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 286 ~~~~~L~laGd~~~------~~~---~~~~~egA~~Sg~~aA~~Il~ 323 (368)
.+++|||.||+... .++ +..++-.|+.+|++|++.+.+
T Consensus 502 ~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 502 TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 58999999998863 122 113566688999999998754
No 349
>PRK09077 L-aspartate oxidase; Provisional
Probab=42.89 E-value=35 Score=34.24 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=30.9
Q ss_pred CCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..++++|||.||+... ..|+. .++-.|+..|++|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 4478999999999763 23431 356668889999999987654
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=42.79 E-value=34 Score=36.01 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=31.9
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.|..+|+|.+||-.. + + ..+..|+..|+.||..|.+.+.
T Consensus 712 ~Ts~~gVfA~GD~~~-g-~-~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 712 QSSIPGIYAGGDIVR-G-G-ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCCCCEEEeCCccC-C-c-HHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999985 2 2 3567799999999999988774
No 351
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=42.60 E-value=32 Score=34.82 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.|..+|+|.+||.+. + + ..+..|+..|+.||..|.+.+..
T Consensus 406 ~ts~~~Vfa~GD~~~-g-~-~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 406 MTGRPGVFAGGDMVP-G-P-RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred cCCCCCEEeccCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999885 2 2 46678999999999999888863
No 352
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=42.33 E-value=32 Score=37.33 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.|..+|+|.+||... .+ .++..|+..|+.||..|++..+.
T Consensus 804 qTs~pgVFAaGD~a~--Gp-~tvv~Ai~qGr~AA~nI~~~~~~ 843 (1019)
T PRK09853 804 ETSLTNVYMIGDVQR--GP-STIVAAIADARRAADAILSREGI 843 (1019)
T ss_pred ccCCCCEEEEecccc--Cc-hHHHHHHHHHHHHHHHHhhhcCC
Confidence 467899999999874 23 46778999999999999988763
No 353
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.14 E-value=34 Score=35.35 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=32.4
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.|..+|+|.+||-+. + + .....|+..|+.||..|.+.+..
T Consensus 463 ~Ts~pgVfA~GDv~~-g-~-~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 463 QTSVAGVFAGGDCVT-G-A-DIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred cCCCCCEEEcCCcCC-C-c-hHHHHHHHHHHHHHHHHHHHHcC
Confidence 467899999999885 2 2 35567899999999999999864
No 354
>PRK08401 L-aspartate oxidase; Provisional
Probab=41.87 E-value=42 Score=33.05 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~ 324 (368)
..|+++|||.||+... .-|+. .++-.++..|+.|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 4478999999999864 22442 23344678899999998764
No 355
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=41.46 E-value=37 Score=32.73 Aligned_cols=53 Identities=30% Similarity=0.334 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHcC-CEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChhhH
Q 017625 87 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 87 ~L~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~~l 145 (368)
.+..++.+.+++.+ +++..+ .|++|..++ .+ |.++ ++.+.+|+.|++++..+-
T Consensus 58 ~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~--k~---V~~~~~~~i~YD~LVvalGs~~~ 112 (405)
T COG1252 58 EIAIPLRALLRKSGNVQFVQG-EVTDIDRDA--KK---VTLADLGEISYDYLVVALGSETN 112 (405)
T ss_pred heeccHHHHhcccCceEEEEE-EEEEEcccC--CE---EEeCCCccccccEEEEecCCcCC
Confidence 47778888888665 777766 799999876 54 4455 478999999999998653
No 356
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.38 E-value=37 Score=34.46 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=29.3
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||-||+-... .|+. .++-.|+..|++|++.+.+.+
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999997642 2331 345678899999999887654
No 357
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=41.09 E-value=28 Score=35.40 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=30.1
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++|+|||.||+.+.. .|+. .++-.|+.+|++|++.+.+...
T Consensus 526 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 526 QPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 589999999975421 2321 3566688999999999987665
No 358
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.06 E-value=33 Score=34.99 Aligned_cols=41 Identities=27% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||+-... .|+. .++-.|+..|++|++.+.+...
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 579999999997642 2331 2566788999999999877653
No 359
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=41.05 E-value=28 Score=35.14 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+++|||.||+.+.. .|+. .++-.|+.+|++|++.+.++
T Consensus 512 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 512 SVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 589999999988742 2321 24556899999999988653
No 360
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=40.87 E-value=27 Score=33.81 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=26.8
Q ss_pred CCCCCC-CCCCceEEeccccccCCC-----C-ccchHHhHHHHHHHHHHH
Q 017625 280 YMMRGF-TSFPNLFMAGDWITTRHG-----S-WSQERSYVTGLEAANRVV 322 (368)
Q Consensus 280 ~~p~~~-~~~~~L~laGd~~~~~~~-----~-~~~egA~~Sg~~aA~~Il 322 (368)
.||... ..++|||++|.-+. ||. + +++ |+.||+.||+.|+
T Consensus 373 lrp~~~g~~~~Nl~a~G~vL~-G~d~~~~gcG~GV--ai~Ta~~aa~~i~ 419 (419)
T TIGR03378 373 LRPSRGGQTIENLYAIGAVLG-GYDPIFEGCGSGV--AVSTALHAAEQII 419 (419)
T ss_pred cCccCCCcccccceEechhhc-CCChHhcCCCchh--HHHHHHHHHHhhC
Confidence 455322 24899999997765 222 1 233 8899999999874
No 361
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.78 E-value=59 Score=33.53 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCCCCCCceEEeccccccCCCC-----ccchHHhHHHHHHHHH
Q 017625 283 RGFTSFPNLFMAGDWITTRHGS-----WSQERSYVTGLEAANR 320 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~~~~~-----~~~egA~~Sg~~aA~~ 320 (368)
..+|.++|||.||+....-|+. .++-.|+.-|+.|++.
T Consensus 414 ~~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 414 NLMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CCccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 3457899999999975434552 2355677888887655
No 362
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=40.44 E-value=34 Score=34.78 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHHhCC
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
++++|||.||+.... .|+. .++-.|+.+|++|++.+.+....
T Consensus 525 ~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 525 SVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 589999999977532 2332 23566899999999999887653
No 363
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.40 E-value=39 Score=34.41 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+-.. ..|+. .++-.|+..|+.|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999764 22432 244668889999999887654
No 364
>PLN02815 L-aspartate oxidase
Probab=40.15 E-value=42 Score=34.27 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCCCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 282 MRGFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 282 p~~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
....|+++|||.||+-.. .-||. .++-.++..|++|++.+....
T Consensus 384 ~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~ 433 (594)
T PLN02815 384 LQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHM 433 (594)
T ss_pred CCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 344578999999999864 22331 345667889999999887543
No 365
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.95 E-value=43 Score=33.91 Aligned_cols=42 Identities=29% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCC-CCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 285 FTS-FPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 285 ~~~-~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.++ ++|||.||+.... -|+. .++-.|+..|++|++.+.+...
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 465 9999999998642 2331 2567788999999998876543
No 366
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=39.93 E-value=54 Score=31.18 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChh
Q 017625 100 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 143 (368)
Q Consensus 100 G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~ 143 (368)
+..|+++++|+++ +. ++|+ + .+|++++||.||-|.+..
T Consensus 100 ~~~i~~~~~V~~v--~~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGL--DA--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEE--eC--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 3348889999988 33 3343 3 457899999999999976
No 367
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=39.77 E-value=25 Score=35.15 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+++|||.||+.+.. .|+. .++-.|++.|++|++.+.++
T Consensus 467 ~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 467 RPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred CEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 589999999987532 3432 23677899999999988543
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=39.72 E-value=33 Score=34.08 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 286 TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
|.++|+|.+||-.++.. +.+-.+...|..+|+.|++++..
T Consensus 384 T~ipGvyAaGDi~~Gp~--gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 384 DTEPGLYVVGWLKRGPT--GIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCCCCEEEeeeEecCCC--CeeeecHhhHHHHHHHHHHHHHc
Confidence 67899999999997322 35666888999999999999864
No 369
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=38.61 E-value=29 Score=33.59 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=23.2
Q ss_pred CCCCceEEecccccc--CCCCccchHHhHHHHHHHH
Q 017625 286 TSFPNLFMAGDWITT--RHGSWSQERSYVTGLEAAN 319 (368)
Q Consensus 286 ~~~~~L~laGd~~~~--~~~~~~~egA~~Sg~~aA~ 319 (368)
..++||||||+-+.- .-|+=.+..|..||+.|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 358999999987742 1111246789999999986
No 370
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=38.58 E-value=42 Score=34.55 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=30.7
Q ss_pred CCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||+... .-|+. .++-.|+..|++|++.+.+...
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~ 467 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAK 467 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 67999999999764 22432 2566788999999999877643
No 371
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=38.47 E-value=3.8e+02 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHc-CCEEeccceeeeEEecCCCceEEEEEEC---CeEE--ecC-EEEEeeChhhHHH
Q 017625 87 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---KETY--SAG-AVVLAVGISTLQE 147 (368)
Q Consensus 87 ~L~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~g~v~~v~~~---g~~~--~ad-~VV~a~p~~~l~~ 147 (368)
++++.|.+..-+. .+++.-+ .|.++..++ |-|+||+.. |+++ .|. .|||..=...+.+
T Consensus 148 RFvq~lR~ka~slpNV~~eeG-tV~sLlee~--gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRr 212 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRLEEG-TVKSLLEEE--GVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRR 212 (509)
T ss_pred HHHHHHHHHHhcCCCeEEeee-eHHHHHhcc--CeEEeEEEecCCCceEEEecceEEEecchhHHHHH
Confidence 5888888877654 4555555 566676555 778899875 4444 444 4777766666653
No 372
>PRK06116 glutathione reductase; Validated
Probab=38.39 E-value=42 Score=32.70 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.1
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||.+. +.+ ....|...|+.+|+.|+..
T Consensus 292 ~Ts~~~IyA~GD~~~-~~~--~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 292 NTNVPGIYAVGDVTG-RVE--LTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CcCCCCEEEEeecCC-CcC--cHHHHHHHHHHHHHHHhCC
Confidence 467899999999884 232 4567899999999999753
No 373
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=38.38 E-value=34 Score=35.15 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCCCceEEeccccccCCC-----CccchHHhHHHHHHHHHHHHHh
Q 017625 285 FTSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~-----~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
.|+++|||.||+-...-|| ..++-.|+..|+.|++.+.+..
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 4789999999997542233 1356678889999988877654
No 374
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=38.17 E-value=1e+02 Score=31.93 Aligned_cols=43 Identities=28% Similarity=0.334 Sum_probs=30.2
Q ss_pred CCC-CCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFT-SFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~-~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..+ +++|||.||+.... -|+. .++-.|+..|+.|++.+.+...
T Consensus 381 ~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~ 430 (657)
T PRK08626 381 GESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCL 430 (657)
T ss_pred CCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 345 69999999998642 2332 3456688899999998876543
No 375
>PRK08071 L-aspartate oxidase; Provisional
Probab=37.64 E-value=40 Score=33.64 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..|+++|||.||+-... -|+. .++-.++..|++|++.+....
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~~ 388 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTKA 388 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 45789999999997642 2321 345667889999999986553
No 376
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.62 E-value=41 Score=34.17 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+-... -||. .++-.|+..|++|++.+.+..
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 479999999997642 2331 346678899999999887654
No 377
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=37.57 E-value=34 Score=33.26 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCceEEeccccccCCCC---ccch-HHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITTRHGS---WSQE-RSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~~---~~~e-gA~~Sg~~aA~~Il~~~~ 326 (368)
+.++|||.+|+-+.. +.- ++=+ -|+.||+.|+++|.+...
T Consensus 378 ~~~~nl~a~G~vl~g-~d~~~~~~g~Gva~~ta~~a~~~~~~~~~ 421 (422)
T PRK05329 378 PVIENLYAAGAVLGG-YDPIREGCGSGVALATALHAAEQIAEEAG 421 (422)
T ss_pred eeccceEEeeehhcC-CchHHhCCCchhHHHHHHHHHHHHHHhhc
Confidence 458999999988862 221 1111 278899999999987643
No 378
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=36.65 E-value=37 Score=33.79 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCCCceEEeccccccCCC-----CccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~-----~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+.+..-|+ ..++-.|+.+|+.|++.+.+..
T Consensus 459 ~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 459 SPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred CEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 589999999997642221 1345568889999999887653
No 379
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.57 E-value=42 Score=34.10 Aligned_cols=40 Identities=30% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+-.. ..|+. .++-.|+..|+.|++.+.+..
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 67999999999764 22331 256668889999998887654
No 380
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=36.34 E-value=40 Score=33.08 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=29.0
Q ss_pred CCCCceEEecccccc-----CCCC-ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT-----RHGS-WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-----~~~~-~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||+.+.. +|+. .++-.|+..|++|++.+.+...
T Consensus 416 ~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 416 RPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 489999999986432 2221 3456678899999998877643
No 381
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=36.20 E-value=39 Score=34.62 Aligned_cols=40 Identities=35% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+-... -|+. .++-.|+..|++|++.+.+..
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 479999999997642 2331 256678899999999987764
No 382
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=35.71 E-value=39 Score=34.14 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
+|..+|+|.+||-+..... .+..|+..|..||..|.+.+..
T Consensus 270 ~Ts~p~IyAaGDv~~~~~~--~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 270 ETNVPGVYAAGDLRPKELR--QVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred ccCCCCEEEceeccCCCcc--hheeHHhhHHHHHHHHHHHHHh
Confidence 4567999999998643222 3456889999999998766643
No 383
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=35.63 E-value=1.1e+02 Score=30.06 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=27.8
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
++..+++|.+||.+. +. .....|...|..||+.|...
T Consensus 307 ~ts~~~IyAiGD~~~-~~--~~~~~A~~~g~~aa~~i~g~ 343 (472)
T PRK05976 307 QTKERHIYAIGDVIG-EP--QLAHVAMAEGEMAAEHIAGK 343 (472)
T ss_pred ccCCCCEEEeeecCC-Cc--ccHHHHHHHHHHHHHHHcCC
Confidence 456799999999984 22 24566888999999988643
No 384
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=34.49 E-value=57 Score=31.53 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-------C---------eEEecCEEEEeeCh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGI 142 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-------g---------~~~~ad~VV~a~p~ 142 (368)
.++.-|.+..++.|++|.-+.-+.++.+++| |.|.||.++ | =.+.|..-|+|-+-
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 3677788889999999999999999999987 889998763 1 14677777777544
No 385
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=33.77 E-value=47 Score=33.73 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=29.0
Q ss_pred CCCCceEEecccccc----CCCC--ccchHHhHHHHHHHHHHHHHhC
Q 017625 286 TSFPNLFMAGDWITT----RHGS--WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 286 ~~~~~L~laGd~~~~----~~~~--~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
++++|||.||..+.. .|+. .++-.|+..|++|++.+.+...
T Consensus 527 ~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 527 QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred CCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 589999999966632 2321 2345588999999998876643
No 386
>PRK14727 putative mercuric reductase; Provisional
Probab=33.42 E-value=49 Score=32.68 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+++|.+||-+. .+ ....-|...|..||+.|+..
T Consensus 310 ~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 310 ETSAPDIYAAGDCSD--LP-QFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred ecCCCCEEEeeecCC--cc-hhhhHHHHHHHHHHHHHcCC
Confidence 467899999999884 33 35567888999999999753
No 387
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=33.07 E-value=52 Score=32.14 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||-+. .+ .....|...|..||+.|+..
T Consensus 299 ~t~~~~IyAiGD~~~--~~-~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 299 QTAVPHIYAVGDVIG--FP-SLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred ccCCCCEEEeeecCC--Cc-ccHhHHHHHHHHHHHHHcCC
Confidence 466899999999883 33 24566899999999999843
No 388
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.99 E-value=60 Score=32.98 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 287 SFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 287 ~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
+++|||.||+.... .|+. .++-.|+..|++|++.+.+..
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 59999999998642 2431 345668889999999887654
No 389
>PRK08275 putative oxidoreductase; Provisional
Probab=32.81 E-value=42 Score=33.86 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=30.2
Q ss_pred CCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHh
Q 017625 283 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..+|.++|||.||+....++ ..+..|+..|+.|++.+.+..
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~--~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH--NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh--HHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999764333 355668888998888876554
No 390
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=32.09 E-value=89 Score=29.41 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=48.9
Q ss_pred ecCCcchhhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhhHH
Q 017625 80 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGISTLQ 146 (368)
Q Consensus 80 ~~GG~~~~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~l~ 146 (368)
+--|+-+.+++.++++++++|.++.-.+..++|+.-++ |+. .|.. + ++ .-.+|.|+.|++=..+.
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcE-EEEeecccccccccchhhhhhhhhccccch
Confidence 34577888999999999999999999988888987665 652 2322 1 32 45889999998876554
No 391
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.77 E-value=50 Score=33.64 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 286 TSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 286 ~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++++|||.||+-... .|+. .++-.|+..|+.|++.+.+..
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 379999999997642 2432 256678899999999887654
No 392
>PRK13748 putative mercuric reductase; Provisional
Probab=31.59 E-value=55 Score=32.95 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
+|..+|+|.+||.+. .+ ..+..|...|..||..|+.
T Consensus 392 ~Ts~~~IyA~GD~~~--~~-~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 392 RTSVPHIYAAGDCTD--QP-QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred ccCCCCEEEeeecCC--Cc-cchhHHHHHHHHHHHHHcC
Confidence 467899999999984 33 3556688899999999974
No 393
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=31.57 E-value=1.4e+02 Score=29.35 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||.+.. + ....-|...|..||+.|...
T Consensus 311 ~Ts~~~VyA~GD~~~~--~-~~~~~A~~~G~~aa~~i~g~ 347 (475)
T PRK06327 311 RTNVPNVYAIGDVVRG--P-MLAHKAEEEGVAVAERIAGQ 347 (475)
T ss_pred ccCCCCEEEEEeccCC--c-chHHHHHHHHHHHHHHHcCC
Confidence 4678999999998852 2 24456888999999999753
No 394
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=31.28 E-value=1.3e+02 Score=29.42 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=29.0
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+++|.+||.+. .+ .....|...|..+|+.|...
T Consensus 298 ~t~~~~VyAiGD~~~--~~-~~~~~A~~~g~~aa~ni~~~ 334 (462)
T PRK06416 298 RTNVPNIYAIGDIVG--GP-MLAHKASAEGIIAAEAIAGN 334 (462)
T ss_pred ccCCCCEEEeeecCC--Cc-chHHHHHHHHHHHHHHHcCC
Confidence 467899999999984 22 24566889999999999863
No 395
>PRK07512 L-aspartate oxidase; Provisional
Probab=31.20 E-value=60 Score=32.42 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=30.3
Q ss_pred CCCCCCceEEecccccc-CCCC-----ccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITT-RHGS-----WSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~-~~~~-----~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
..|+++|||.||+.... -|+. .++-.|+..|+.|++.+.+...
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44789999999997632 2332 2345577889999999876643
No 396
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=30.71 E-value=67 Score=32.53 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHH-cCCEEeccceeeeEEecCCCceEEEEEE---C-Ce--EEecCEEEEeeChhh
Q 017625 86 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC---G-KE--TYSAGAVVLAVGIST 144 (368)
Q Consensus 86 ~~L~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~g~v~~v~~---~-g~--~~~ad~VV~a~p~~~ 144 (368)
+.+...|.+.+.+ ++.+|..+..|.++..+++ +.|.++.. . |+ .+.++.||+|++...
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4588888888777 6678999999999998864 43556543 2 44 468889999997765
No 397
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=30.58 E-value=71 Score=31.68 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=29.2
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||-+. .+ ....-|...|..+|+.|+..
T Consensus 315 ~Ts~~~IyA~GDv~~--~~-~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 315 RTNVPNIYAIGDVTD--RV-MLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred cCCCCCEEEeeecCC--Cc-ccHHHHHHHHHHHHHHHhCC
Confidence 467899999999985 23 35566889999999999853
No 398
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=29.98 E-value=62 Score=31.63 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
+|..+|+|.+||.+. .+ .....|...|..||+.|..
T Consensus 295 ~ts~~~IyA~GD~~~--~~-~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 295 QTSVPGIYAAGDVNG--KP-PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred ccCCCCEEEEEecCC--Cc-cchhHHHHHHHHHHHHhcC
Confidence 467899999999985 22 2446688999999999976
No 399
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=29.72 E-value=69 Score=31.48 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
+|.++|+|.+||.+.. + ....-|..-|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV~~~--~-~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGG--P-MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCC--c-ccHhHHHHHHHHHHHHHhC
Confidence 3568999999999852 3 2556688999999999997
No 400
>PLN02507 glutathione reductase
Probab=29.59 E-value=70 Score=31.79 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.5
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+|+|.+||.+.. +. ....|...|+.+|+.|+..
T Consensus 326 ~~Ts~p~IyAiGDv~~~-~~--l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNR-IN--LTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CcCCCCCEEEeeEcCCC-Cc--cHHHHHHHHHHHHHHHcCC
Confidence 35788999999999952 22 4466888999999999753
No 401
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.74 E-value=1.4e+02 Score=29.21 Aligned_cols=56 Identities=16% Similarity=-0.008 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHcCC--EEeccceeeeEEecCCCceEEEEEEC---C--eEEecCEEEEeeChhh
Q 017625 87 KIFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIST 144 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~--~i~~~t~V~~I~~~~~~g~v~~v~~~---g--~~~~ad~VV~a~p~~~ 144 (368)
.+.+-|..++++.+. .|++++.|.++...++ |+ |.|... + +...+|.||+|++-..
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GK-WRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccC-Cc-eeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 477888888887764 7999999999987653 44 666653 2 3678999999888773
No 402
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=28.71 E-value=68 Score=35.72 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=29.9
Q ss_pred CCCCceEEeccccccCCC-----CccchHHhHHHHHHHHHHHHHhCC
Q 017625 286 TSFPNLFMAGDWITTRHG-----SWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 286 ~~~~~L~laGd~~~~~~~-----~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.+++|||.||+.+..-++ +.++-.|+..|+.|++.+.+.+..
T Consensus 858 ~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~ 904 (1167)
T PTZ00306 858 RPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQK 904 (1167)
T ss_pred ceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999997632111 134455788999999988887654
No 403
>PRK14694 putative mercuric reductase; Provisional
Probab=28.54 E-value=69 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=29.4
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+++|.+||-+. .+ ..+.-|...|..||..|+..
T Consensus 298 ~~Ts~~~IyA~GD~~~--~~-~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 298 LQTTVSGIYAAGDCTD--QP-QFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred cccCCCCEEEEeecCC--Cc-ccHHHHHHHHHHHHHHhcCC
Confidence 3467899999999984 33 35567888999999998743
No 404
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=28.49 E-value=65 Score=29.77 Aligned_cols=41 Identities=29% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHhC
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 326 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~~ 326 (368)
.+|.++|+|.|||-....+. -+.-|+..|..||..+.+.+.
T Consensus 261 ~~TsvpGifAaGDv~~~~~r--qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 261 METSVPGIFAAGDVADKNGR--QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred cccCCCCEEEeEeeccCccc--EEeehhhhHHHHHHHHHHHhh
Confidence 56889999999999964331 345577788888887777654
No 405
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.46 E-value=69 Score=31.56 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+++|.+||.+. .+ ....-|...|+.||+.|...
T Consensus 301 ~t~~p~VyAiGDv~~--~~-~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 301 RTNVPHIFAIGDIVG--QP-MLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred ccCCCCEEEehhhcC--Cc-ccHHHHHHHHHHHHHHHcCC
Confidence 467899999999874 23 24566889999999999753
No 406
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=28.37 E-value=1.4e+02 Score=30.19 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCCCCceEEeccccccCC-C-----CccchHHhHHHHHHHHHHHHHhCC
Q 017625 285 FTSFPNLFMAGDWITTRH-G-----SWSQERSYVTGLEAANRVVDYLGD 327 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~-~-----~~~~egA~~Sg~~aA~~Il~~~~~ 327 (368)
.+.+++||.||+.....+ + ...+.+++..|+.|+....+.+..
T Consensus 366 ~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~ 414 (562)
T COG1053 366 ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKE 414 (562)
T ss_pred ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999985211 1 146777888999888887777764
No 407
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=28.25 E-value=41 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCCceEEecccccc-C-CCCccchHHhHHHHHHH
Q 017625 287 SFPNLFMAGDWITT-R-HGSWSQERSYVTGLEAA 318 (368)
Q Consensus 287 ~~~~L~laGd~~~~-~-~~~~~~egA~~Sg~~aA 318 (368)
.++||||||+-+.- | -|+-.+.-|..||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 57999999987742 1 11124567899999886
No 408
>PRK07804 L-aspartate oxidase; Provisional
Probab=27.47 E-value=80 Score=31.78 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=29.2
Q ss_pred CCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..|+++|||.||+-.. .-|+. .++..++..|+.|++.+.+..
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~ 413 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAHA 413 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999864 22331 234456778999998887654
No 409
>PTZ00367 squalene epoxidase; Provisional
Probab=27.16 E-value=6.8e+02 Score=25.45 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=26.0
Q ss_pred CCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHH
Q 017625 288 FPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 288 ~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~ 323 (368)
.+|+.+.||..+.-+|. .+|.-|+.-+..-++.|..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 47899999999876663 5666677777766666643
No 410
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=27.15 E-value=79 Score=31.01 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+++|.+||.+.. .+ ....|...|..||+.|...
T Consensus 300 ~Ts~p~IyAiGD~~~~-~~--l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 300 RTNVPHIYAIGDVTAK-LQ--LAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred ccCCCCEEEEeecCCC-cc--cHhHHHHHHHHHHHHHcCC
Confidence 4678999999999852 32 4566889999999999753
No 411
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=26.90 E-value=64 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+++|.+||-+. .+ ....-|...|..+|+.|+..
T Consensus 301 ~~Ts~~~IyA~GD~~~--~~-~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 301 HRTSVPGVWVIGDVTS--GP-MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred eecCCCCEEEeeecCC--Cc-ccHHHHHHHHHHHHHHHcCC
Confidence 3567899999999985 22 24566888999999999764
No 412
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=26.41 E-value=86 Score=26.09 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHcCCEEeccceeee---EE-ecCCCceEEEEEECCeEEecCEEEEe
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTD---FI-YDEERCCISDVVCGKETYSAGAVVLA 139 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~---I~-~~~~~g~v~~v~~~g~~~~ad~VV~a 139 (368)
.=.+.+++.++++|.+-.+|..-.. |- .+. .| +.....+.+.||.|++-
T Consensus 44 eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~--~R--~~v~~~GIy~ADVVLVP 96 (178)
T PF02006_consen 44 ERVEKIAELLREHGAEEVLGVNPDASERIPGLDH--ER--AKVSKEGIYSADVVLVP 96 (178)
T ss_pred HHHHHHHHHHHHcCCCEeeccCCcccccCCCCCC--cc--ceECcccceeccEEEec
Confidence 3568899999999998888874322 21 111 12 12233568999999863
No 413
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=26.41 E-value=1.8e+02 Score=31.84 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=32.1
Q ss_pred HcCCEEeccceeeeEEecCCCceEEE----------------EEEC-CeEEecCEEEEeeChhhHHHhh
Q 017625 98 TRGCEFLDGRRVTDFIYDEERCCISD----------------VVCG-KETYSAGAVVLAVGISTLQELI 149 (368)
Q Consensus 98 ~~G~~i~~~t~V~~I~~~~~~g~v~~----------------v~~~-g~~~~ad~VV~a~p~~~l~~ll 149 (368)
+.|++++.++.+++|.. + |+++. +..+ +.++.+|.||.+++...-.+++
T Consensus 719 eeGVe~~~~~~p~~I~~-d--G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntell 784 (1019)
T PRK09853 719 EDGVEFKELLNPESFDA-D--GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELL 784 (1019)
T ss_pred HcCCEEEeCCceEEEEc-C--CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHH
Confidence 46899999998888852 2 33221 1222 2478999999999886444444
No 414
>PRK06444 prephenate dehydrogenase; Provisional
Probab=26.22 E-value=1.4e+02 Score=25.54 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEECCeEEecCEEEEeeChhhHHHhhhh
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~g~~~~ad~VV~a~p~~~l~~ll~~ 151 (368)
+-..+++.+++.|-.|. .-.||.||+++|+..+.+++..
T Consensus 12 mG~~~~~~~~~~g~~v~-------------------------~~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY-------------------------IKKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred HHHHHHHHHHhCCCEEE-------------------------ECCCCEEEEeCCHHHHHHHHHH
Confidence 55677777787775553 1268999999999998877664
No 415
>PRK06370 mercuric reductase; Validated
Probab=26.16 E-value=87 Score=30.66 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.+|..+|+|.+||.+.. + .....|...|..||+.|+..
T Consensus 297 l~t~~~~IyAiGD~~~~-~--~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGR-G--AFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CcCCCCCEEEeeecCCC-c--ccHHHHHHHHHHHHHHHhCC
Confidence 34678999999999852 3 24567888999999999854
No 416
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=25.47 E-value=2.1e+02 Score=29.55 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHcCCEEeccceeeeEEecCCCceE--EEEEE----------------CCe--EEecCEEEEeeChh
Q 017625 97 RTRGCEFLDGRRVTDFIYDEERCCI--SDVVC----------------GKE--TYSAGAVVLAVGIS 143 (368)
Q Consensus 97 ~~~G~~i~~~t~V~~I~~~~~~g~v--~~v~~----------------~g~--~~~ad~VV~a~p~~ 143 (368)
.+.|++|++++.+++|..++ +++ ..+.. +|+ ++.+|.||++++..
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 35699999999999987654 433 22211 122 58999999999864
No 417
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=25.06 E-value=53 Score=23.91 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHcC---CEEecc--ceeeeE---EecCCCceEEEEEEC-CeE-EecCEEEEeeChhhHHHhhhh
Q 017625 87 KIFEPWMDSMRTRG---CEFLDG--RRVTDF---IYDEERCCISDVVCG-KET-YSAGAVVLAVGISTLQELIKN 151 (368)
Q Consensus 87 ~L~~~l~~~l~~~G---~~i~~~--t~V~~I---~~~~~~g~v~~v~~~-g~~-~~ad~VV~a~p~~~l~~ll~~ 151 (368)
.+..+|.+.+.+.| .+|... ..-.++ ...- + +.....+ .+. -.+|.||+++|+..+..++..
T Consensus 9 ~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~--~-~~~~~~~~~~~~~~advvilav~p~~~~~v~~~ 80 (96)
T PF03807_consen 9 NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY--G-VQATADDNEEAAQEADVVILAVKPQQLPEVLSE 80 (96)
T ss_dssp HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC--T-TEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh--c-cccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence 48888888888887 455422 111111 1111 1 1111112 222 269999999999999887665
No 418
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.92 E-value=58 Score=25.48 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEE--C-CeEEecCEEEEeeChhhH
Q 017625 88 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KETYSAGAVVLAVGISTL 145 (368)
Q Consensus 88 L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~--~-g~~~~ad~VV~a~p~~~l 145 (368)
-.++|.+..+++|.+|+ |++.+. .|+.. . .+.-.||.||++++...-
T Consensus 20 AAeaLe~~A~~~g~~IK-------VETqGs----~G~eN~LT~edI~~Ad~VI~AaD~~i~ 69 (122)
T COG1445 20 AAEALEKAAKKLGVEIK-------VETQGA----VGIENRLTAEDIAAADVVILAADIEVD 69 (122)
T ss_pred HHHHHHHHHHHcCCeEE-------EEcCCc----ccccCcCCHHHHHhCCEEEEEeccccc
Confidence 34677777788888874 444442 23322 2 345589999999998653
No 419
>PRK07395 L-aspartate oxidase; Provisional
Probab=24.31 E-value=99 Score=31.26 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCCCCCCceEEeccccc-cCCCC-----ccchHHhHHHHHHHHHHHH
Q 017625 283 RGFTSFPNLFMAGDWIT-TRHGS-----WSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~-~~~~~-----~~~egA~~Sg~~aA~~Il~ 323 (368)
..+|+++|||.||+... .-|+. .++-.++..|+.|++.+..
T Consensus 355 ~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 355 NNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CCcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999764 22332 2233456778898888753
No 420
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=24.25 E-value=99 Score=31.65 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=28.4
Q ss_pred CCCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHh
Q 017625 283 RGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 283 ~~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
...|.++|||.|||-...+.. ....++...|+.|++.+.+.+
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~-~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPH-KFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred ccccCCCCEEEeeecCCCCcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 345789999999998753222 234556667777777776654
No 421
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=24.07 E-value=75 Score=34.27 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.0
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHh
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
..|.++|||.|||.....+ .++-+|+.-|..|++.+.+..
T Consensus 370 ~~T~v~GLfAaGE~a~~~~--nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLACVPH--NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccCcch--hhhhhHHHhHHHHHHHHHHHH
Confidence 4578999999999765333 356668888888888887653
No 422
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=24.01 E-value=1.1e+02 Score=30.28 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHH
Q 017625 284 GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 323 (368)
Q Consensus 284 ~~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~ 323 (368)
.+|..+++|.+||-+.. .+ ....-|...|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~-~~-~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILED-KQ-ELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCC-Cc-cchHHHHHHHHHHHHHHhc
Confidence 34678999999998852 22 2345688899999999985
No 423
>PTZ00052 thioredoxin reductase; Provisional
Probab=22.92 E-value=1.1e+02 Score=30.54 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=29.0
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
.|..+++|.+||-+.. .+ ....-|...|+.+|+.|+..
T Consensus 304 ~Ts~p~IyAiGDv~~~-~~-~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEG-RP-ELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred cCCCCCEEEEEEecCC-Cc-ccHHHHHHHHHHHHHHHhCC
Confidence 4678999999998742 23 24567889999999999753
No 424
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=22.61 E-value=1e+02 Score=30.12 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHHh
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 325 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~~ 325 (368)
++..+++|.+||.... + .....|...|..+|+.|....
T Consensus 296 ~t~~~~IyaiGD~~~~--~-~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--P-MLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred ccCCCCEEEeeecCCC--c-ccHHHHHHHHHHHHHHHcCCC
Confidence 4567999999998842 2 245668899999999998643
No 425
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.36 E-value=2.9e+02 Score=25.14 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=26.4
Q ss_pred CCCCCceEEeccccccCCCC--ccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGS--WSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~--~~~egA~~Sg~~aA~~Il~~ 324 (368)
....+|+.+.||..+.-||. ++|.-|+..+...++.+...
T Consensus 126 ~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~ 167 (276)
T PF08491_consen 126 PNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI 167 (276)
T ss_pred CCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh
Confidence 34458999999999766663 56666666655555555443
No 426
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=1.6e+02 Score=27.92 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHcCCEEeccceeeeEEecCCCceEEEEEEC-CeEEecCEEEEeeChh
Q 017625 87 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 143 (368)
Q Consensus 87 ~L~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~g~v~~v~~~-g~~~~ad~VV~a~p~~ 143 (368)
.|..+|.+++++-.++|....+.+++......+....|++. |-.+.+..||+++++.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 59999999999999999999999999875321323457776 6689999999999984
No 427
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.15 E-value=65 Score=21.63 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=15.7
Q ss_pred hhccCccHHHHHHHcCCCH
Q 017625 15 RKYDSITARELFKQFGCSE 33 (368)
Q Consensus 15 ~~ld~~S~~d~l~~~~~~~ 33 (368)
.+-||+|..+||.|.|-.+
T Consensus 4 SESDnETA~~FL~RvGr~q 22 (60)
T PF06072_consen 4 SESDNETATEFLRRVGRQQ 22 (60)
T ss_pred CccccccHHHHHHHHhHHH
Confidence 4679999999999877655
No 428
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=20.74 E-value=1.4e+02 Score=29.54 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCC-CCCceEEeccccccCCCCccchHHhHHHHHH
Q 017625 240 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT-SFPNLFMAGDWITTRHGSWSQERSYVTGLEA 317 (368)
Q Consensus 240 ~~~~~~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~pg~~~~~p~~~~-~~~~L~laGd~~~~~~~~~~~egA~~Sg~~a 317 (368)
+.+.-.|-+..|++...+++ +--++...-...-...-|...| .++||||||.--.+ -+.|-|+..|..|
T Consensus 344 ee~Q~~lir~IpGLEn~~i~-----qP~YgVeYDyv~prQlk~sLeTkkV~GLF~AGQINGT----TGYEEAAAQGIiA 413 (679)
T KOG2311|consen 344 EELQLQLIRSIPGLENAEIL-----QPGYGVEYDYVDPRQLKPSLETKKVQGLFFAGQINGT----TGYEEAAAQGIIA 413 (679)
T ss_pred HHHHHHHHHhccCcccceee-----cccccceecccChHHcchhhhhhhccceEEeeeecCc----cchHHHHhhhhHh
No 429
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=20.71 E-value=1.2e+02 Score=29.72 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=28.5
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+++|.+||-+.. ++ ...-|...|+.+|+.|+..
T Consensus 292 ~Ts~~~IyA~GD~~~~-~~--l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 292 RTSARGVWALGDVSSP-YQ--LKHVANAEARVVKHNLLHP 328 (452)
T ss_pred ccCCCCEEEeecccCc-cc--ChhHHHHHHHHHHHHhcCC
Confidence 4678999999999853 33 3355888999999999754
No 430
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=20.25 E-value=1.3e+02 Score=29.44 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=28.7
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||.+.. +. ...-|...|..||..|+..
T Consensus 293 ~Ts~~~VyAiGD~~~~-~~--~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 293 RTSNPGIYAAGDVTGG-LQ--LEYVAAKEGVVAAENALGG 329 (463)
T ss_pred cCCCCCEEEeeecCCC-cc--cHhHHHHHHHHHHHHhcCC
Confidence 4678999999999853 22 3456888999999999754
No 431
>PRK07846 mycothione reductase; Reviewed
Probab=20.15 E-value=1.4e+02 Score=29.29 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=28.3
Q ss_pred CCCCCceEEeccccccCCCCccchHHhHHHHHHHHHHHHH
Q 017625 285 FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDY 324 (368)
Q Consensus 285 ~~~~~~L~laGd~~~~~~~~~~~egA~~Sg~~aA~~Il~~ 324 (368)
+|..+|+|.+||-+.. ++ ....|...|+.+|+.|+..
T Consensus 289 ~Ts~p~IyA~GD~~~~-~~--l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 289 RTSAEGVFALGDVSSP-YQ--LKHVANHEARVVQHNLLHP 325 (451)
T ss_pred ccCCCCEEEEeecCCC-cc--ChhHHHHHHHHHHHHHcCC
Confidence 4678999999999852 33 3455888899999999753
Done!