BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>017626
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL
HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY
SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK
DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGG
LSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVW
FLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTV
GGIGGWIR

High Scoring Gene Products

Symbol, full name Information P value
AT4G00290 protein from Arabidopsis thaliana 2.1e-77
AT4G00234 protein from Arabidopsis thaliana 1.1e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  017626
        (368 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2126061 - symbol:AT4G00290 species:3702 "Arabi...   779  2.1e-77   1
TAIR|locus:505006411 - symbol:AT4G00234 "AT4G00234" speci...   725  1.1e-71   1


>TAIR|locus:2126061 [details] [associations]
            symbol:AT4G00290 species:3702 "Arabidopsis thaliana"
            [GO:0005886 "plasma membrane" evidence=ISM] [GO:0016020 "membrane"
            evidence=IEA;ISS] [GO:0055085 "transmembrane transport"
            evidence=IEA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR006685 InterPro:IPR011014 Pfam:PF00924
            GO:GO:0016021 GO:GO:0005739 EMBL:CP002687 GO:GO:0031966
            GO:GO:0009941 GO:GO:0005216 EMBL:AF013293 EMBL:AF195115
            EMBL:AL161471 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0004146
            SUPFAM:SSF82861 eggNOG:COG0668 EMBL:AY064027 EMBL:AY096611
            EMBL:AK176463 EMBL:AK176579 IPI:IPI00546994 PIR:T01542
            RefSeq:NP_567165.2 UniGene:At.27096 ProteinModelPortal:Q8VZL4
            SMR:Q8VZL4 PRIDE:Q8VZL4 EnsemblPlants:AT4G00290.1 GeneID:828077
            KEGG:ath:AT4G00290 TAIR:At4g00290 HOGENOM:HOG000030145
            InParanoid:Q8VZL4 OMA:AELTIGC PhylomeDB:Q8VZL4
            ProtClustDB:CLSN2690271 Genevestigator:Q8VZL4 Uniprot:Q8VZL4
        Length = 497

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 171/317 (53%), Positives = 211/317 (66%)

Query:    62 SALNSINNQLKVHGFAPI--GKTQCH-KANAVSSYL------PTSKNFCSR-RLATFASI 111
             S L SI   +K H  A    G    H +A    + L      P+  +F S  RL   A  
Sbjct:     7 SLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKP 66

Query:   112 SPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDG 171
               +LGH SY+  F SK+D    I V +  +GS     N    G+D  +K KD  ++ VD 
Sbjct:    67 FNYLGHSSYARAFSSKSDDFGSI-VASGVTGSGDGNGN----GNDWVEKAKDVLQTSVDA 121

Query:   172 VSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKY 228
             V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ AWVVMPR+LRRFH Y
Sbjct:   122 VTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTY 181

Query:   229 AIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQ 288
             A+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY + 
Sbjct:   182 AMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSP 241

Query:   289 AWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAE 348
               +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AE
Sbjct:   242 TVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAE 301

Query:   349 ACGVAVQSILTVGGIGG 365
             ACGVAVQSILTVGG+GG
Sbjct:   302 ACGVAVQSILTVGGVGG 318


>TAIR|locus:505006411 [details] [associations]
            symbol:AT4G00234 "AT4G00234" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002687 IPI:IPI00540799 RefSeq:NP_567158.1
            UniGene:At.54054 EnsemblPlants:AT4G00234.1 GeneID:826310
            KEGG:ath:AT4G00234 Uniprot:F4JH25
        Length = 263

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 151/267 (56%), Positives = 191/267 (71%)

Query:    99 NFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDS 157
             +F S  RL + A    +L H SY+  F SK+D    I V +  +GS     N    G+D 
Sbjct:     3 SFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSI-VASGVTGSGD--GN----GNDW 55

Query:   158 FDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA 214
              +K KD  ++ V+ V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ A
Sbjct:    56 VEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFA 115

Query:   215 WVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274
             W+VMPR+LRRFH YA+Q    LL  G S E +PYEKSFWGALEDP RYL+TF+AF QI  
Sbjct:   116 WIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAA 175

Query:   275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
             MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDR+K+L LD++S
Sbjct:   176 MVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVS 235

Query:   335 SVGLFVIGLMALAEACGVAVQSILTVG 361
             SVGLF IGLMA AEACGVAVQSILTVG
Sbjct:   236 SVGLFAIGLMASAEACGVAVQSILTVG 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      368       368   0.00085  117 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  242 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.92u 0.11s 36.03t   Elapsed:  00:00:02
  Total cpu time:  35.92u 0.11s 36.03t   Elapsed:  00:00:02
  Start:  Mon May 20 21:15:02 2013   End:  Mon May 20 21:15:04 2013

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