Query 017626
Match_columns 368
No_of_seqs 167 out of 441
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11465 putative mechanosensi 99.3 1.9E-10 4.2E-15 124.2 18.0 123 245-368 419-551 (741)
2 PRK10334 mechanosensitive chan 98.5 4.2E-07 9.1E-12 88.8 10.4 82 283-367 25-106 (286)
3 PRK11281 hypothetical protein; 97.9 0.00034 7.3E-09 79.7 17.9 80 285-366 835-914 (1113)
4 PRK10929 putative mechanosensi 97.9 0.00048 1E-08 78.3 17.9 80 286-367 833-912 (1109)
5 COG0668 MscS Small-conductance 97.3 0.0017 3.7E-08 62.0 10.3 46 322-367 78-124 (316)
6 COG3264 Small-conductance mech 95.4 1.3 2.9E-05 49.6 19.1 76 287-364 559-637 (835)
7 PRK10334 mechanosensitive chan 90.8 12 0.00026 36.8 15.6 60 203-276 30-89 (286)
8 PRK11281 hypothetical protein; 86.9 12 0.00026 43.6 14.2 58 291-352 580-641 (1113)
9 PF12794 MscS_TM: Mechanosensi 83.6 52 0.0011 33.1 15.9 72 289-364 84-159 (340)
10 PF11449 DUF2899: Protein of u 78.6 17 0.00038 36.4 9.9 42 323-364 175-220 (298)
11 PF12794 MscS_TM: Mechanosensi 75.3 96 0.0021 31.3 14.5 107 245-357 114-224 (340)
12 PF05552 TM_helix: Conserved T 74.8 6.5 0.00014 29.0 4.5 41 282-325 11-51 (53)
13 PF02674 Colicin_V: Colicin V 69.8 70 0.0015 27.3 11.6 71 185-267 43-114 (146)
14 COG4956 Integral membrane prot 69.1 1.2E+02 0.0026 31.1 13.1 92 194-306 39-130 (356)
15 PRK11465 putative mechanosensi 67.0 2.3E+02 0.0049 32.1 17.4 31 326-356 422-453 (741)
16 PRK10929 putative mechanosensi 64.7 75 0.0016 37.4 12.2 44 321-364 589-632 (1109)
17 PF05552 TM_helix: Conserved T 61.2 26 0.00056 25.8 5.3 30 199-232 17-46 (53)
18 PRK10845 colicin V production 59.4 1.4E+02 0.003 27.0 11.7 63 287-350 61-123 (162)
19 PRK13892 conjugal transfer pro 49.3 78 0.0017 28.4 7.1 65 245-309 43-110 (134)
20 PRK01844 hypothetical protein; 36.0 93 0.002 25.2 5.0 29 202-233 9-37 (72)
21 COG1279 Lysine efflux permease 35.8 2.2E+02 0.0049 27.2 8.4 22 251-272 178-199 (202)
22 PRK11677 hypothetical protein; 35.6 40 0.00087 30.1 3.2 26 199-224 2-27 (134)
23 PF12273 RCR: Chitin synthesis 35.0 33 0.00072 29.6 2.6 17 200-216 2-18 (130)
24 PHA01399 membrane protein P6 34.6 1.9E+02 0.0042 27.7 7.7 70 158-227 4-84 (242)
25 COG2274 SunT ABC-type bacterio 34.0 5.6E+02 0.012 28.8 12.4 43 322-365 378-420 (709)
26 PF03672 UPF0154: Uncharacteri 30.5 96 0.0021 24.5 4.2 27 203-232 3-29 (64)
27 PF03908 Sec20: Sec20; InterP 30.3 70 0.0015 26.0 3.6 54 167-220 29-91 (92)
28 PF04367 DUF502: Protein of un 28.9 3.1E+02 0.0068 23.0 7.5 31 202-232 4-34 (108)
29 PF00957 Synaptobrevin: Synapt 28.9 1.1E+02 0.0024 24.4 4.5 34 159-192 13-52 (89)
30 COG3105 Uncharacterized protei 27.5 86 0.0019 28.2 3.9 33 195-227 3-35 (138)
31 PF06011 TRP: Transient recept 26.8 7.2E+02 0.016 25.7 11.4 22 285-306 239-260 (438)
32 PF03806 ABG_transport: AbgT p 26.6 8.5E+02 0.019 26.4 12.5 34 198-231 202-236 (502)
33 PF03699 UPF0182: Uncharacteri 26.0 1E+03 0.023 27.2 14.2 20 330-349 203-222 (774)
34 PRK12768 CysZ-like protein; Re 24.7 6.5E+02 0.014 24.4 15.3 14 179-192 50-63 (240)
35 PRK00523 hypothetical protein; 24.7 1.9E+02 0.0041 23.4 5.0 24 206-232 14-37 (72)
36 PF01810 LysE: LysE type trans 22.5 5.4E+02 0.012 22.7 13.5 91 247-348 100-190 (191)
37 COG5521 Predicted integral mem 21.1 6.7E+02 0.015 25.0 8.9 44 250-303 221-264 (275)
38 PF13268 DUF4059: Protein of u 20.8 3E+02 0.0065 22.3 5.4 25 196-221 9-33 (72)
No 1
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.25 E-value=1.9e-10 Score=124.19 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=89.9
Q ss_pred CCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 017626 245 QVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQ-- 317 (368)
Q Consensus 245 ~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~P~-----~~i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~-- 317 (368)
.+.||+.++++++ |+.+++++++++.+...+... ......++.+..+++++.+++..+.+.+.+.++.+...
T Consensus 419 ~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~ 497 (741)
T PRK11465 419 LNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIH 497 (741)
T ss_pred HhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7789999999999 999999999999876653221 12234456666666666444333333333233333221
Q ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccccccC
Q 017626 318 ---SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWIR 368 (368)
Q Consensus 318 ---~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA~ 368 (368)
.....++++.+++++++++++++++++++|+++|+|+++++|++|++|+|.
T Consensus 498 ~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~Glai 551 (741)
T PRK11465 498 GRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAI 551 (741)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 112457899999999999999999999999999999999999999999973
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=98.55 E-value=4.2e-07 Score=88.79 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhc
Q 017626 283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362 (368)
Q Consensus 283 ~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLG 362 (368)
..+..++...++++.++|++.|+++.+.++++.+. +.|++...++.++.++++++++++++|+.+|+++++++|++|
T Consensus 25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G 101 (286)
T PRK10334 25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG 101 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34566778888899999999999999888777542 578889999999999999999999999999999999999999
Q ss_pred ccccc
Q 017626 363 IGGWI 367 (368)
Q Consensus 363 IGGIA 367 (368)
++|+|
T Consensus 102 ~~gla 106 (286)
T PRK10334 102 AAGLA 106 (286)
T ss_pred HHHHH
Confidence 99987
No 3
>PRK11281 hypothetical protein; Provisional
Probab=97.94 E-value=0.00034 Score=79.65 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (368)
Q Consensus 285 ~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG 364 (368)
.+..+...++++.++|++.|++..+.+.+...+ ...++....++.++++++++++|++++++.+|++++++.+.+|..
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r--l~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL 912 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR--LNLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL 912 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 457788889999999999999998887765332 245667778899999999999999999999999999965554444
Q ss_pred cc
Q 017626 365 GW 366 (368)
Q Consensus 365 GI 366 (368)
|+
T Consensus 913 gV 914 (1113)
T PRK11281 913 SV 914 (1113)
T ss_pred HH
Confidence 44
No 4
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.89 E-value=0.00048 Score=78.34 Aligned_cols=80 Identities=15% Similarity=0.080 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccc
Q 017626 286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365 (368)
Q Consensus 286 l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGG 365 (368)
+..+...++|+.++|++.|++..+.++.+..+ .+.|+.+..++.++++++++++|++++++.+|++++++.+.+|..|
T Consensus 833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galG 910 (1109)
T PRK10929 833 LGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALG 910 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 35667778888899999999999888776443 3578889999999999999999999999999999999877777766
Q ss_pred cc
Q 017626 366 WI 367 (368)
Q Consensus 366 IA 367 (368)
++
T Consensus 911 Vg 912 (1109)
T PRK10929 911 VG 912 (1109)
T ss_pred HH
Confidence 64
No 5
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=97.31 E-value=0.0017 Score=61.97 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=41.9
Q ss_pred cchHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccccc
Q 017626 322 LDREKML-ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGWI 367 (368)
Q Consensus 322 ~D~t~v~-~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGGIA 367 (368)
.+..... ++.++.+++++++++++++..+|+++++++|++|++|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~gla 124 (316)
T COG0668 78 ARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLA 124 (316)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHH
Confidence 3455555 899999999999999999999999999999999999987
No 6
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=1.3 Score=49.57 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH---Hhhhcc
Q 017626 287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI---LTVGGI 363 (368)
Q Consensus 287 ~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaL---LAgLGI 363 (368)
..+...++++.+++++.|++.++.+..+..+ ...|.-+--.+.++++++++++|+++.++++|+|.+++ .+.+|+
T Consensus 559 ~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r--~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsv 636 (835)
T COG3264 559 GALLQAVLLFLITYVLTRNLPGWLEVRVLQR--LDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSV 636 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhh
Confidence 4566777888889999999999888665543 35676677888999999999999999999999999854 344554
Q ss_pred c
Q 017626 364 G 364 (368)
Q Consensus 364 G 364 (368)
|
T Consensus 637 G 637 (835)
T COG3264 637 G 637 (835)
T ss_pred h
Confidence 4
No 7
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=90.85 E-value=12 Score=36.84 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017626 203 PVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV 276 (368)
Q Consensus 203 ~Lliilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll 276 (368)
.++..++..+++|++.+.+.+.+++..++. ..|..+.+.+.+-.+++++++++..+...+
T Consensus 30 ~i~~al~il~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~l~~l 89 (286)
T PRK10334 30 NIVAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRV 89 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455556666666666666665544 356677777888888888888777765544
No 8
>PRK11281 hypothetical protein; Provisional
Probab=86.94 E-value=12 Score=43.65 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 017626 291 RGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACGV 352 (368)
Q Consensus 291 ~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~----~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGV 352 (368)
....-+.+.|+++.+...+ ..... .-+.+++.+..+.+-++-++|++..+++...++.
T Consensus 580 ~~~~~~~~~w~~~~~~~~~----~~~~Gl~~~HF~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~ 641 (1113)
T PRK11281 580 SWSLKLALFWLVFATCYRV----LRPNGVAERHFGMPKEQVSHFRRQIVRLSLALLPLLFWSVVAE 641 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCCCeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445667766655432 12111 1356778888888888888888777777766544
No 9
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=83.60 E-value=52 Score=33.13 Aligned_cols=72 Identities=11% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626 289 AWRGAVILSFVWFLHRWKTNVFTRAMASQS----IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (368)
Q Consensus 289 i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~----~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG 364 (368)
+.....-..+.|+++.+...+ ..++. .=+.+++.++.+.|.++-+++++..+++...+..+...-++...+|
T Consensus 84 l~~~l~~~a~~~~~~~~~~~l----~rp~Gl~~~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LG 159 (340)
T PF12794_consen 84 LGAALLAMALFWLVFEFFRRL----LRPNGLAERHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLG 159 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCCCeEeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHH
Confidence 334444445556666555432 22211 1356788999999999999999999999988876555544444443
No 10
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=78.58 E-value=17 Score=36.44 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH----cCCchhHHHhhhccc
Q 017626 323 DREKMLALDRISSVGLFVIGLMALAEA----CGVAVQSILTVGGIG 364 (368)
Q Consensus 323 D~t~v~~LsKvlrivIiiIGvL~ILq~----lGVnVTaLLAgLGIG 364 (368)
+....+.+....++.+|++++.++++- .|.|++.++..-|+-
T Consensus 175 ~~~~~~a~~hT~~I~~~v~~~~l~~~~~i~~~G~dl~~~l~~~~~~ 220 (298)
T PF11449_consen 175 SHILQKALQHTLFIFVWVFVAFLALELVIEFIGEDLAALLSGNGIL 220 (298)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhCchH
Confidence 344788888999999999999988875 699988888877653
No 11
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=75.34 E-value=96 Score=31.27 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCcchHHHHHHhHHHHHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 017626 245 QVPYEKSFWGALEDPVRYLITFMAFVQIGMMV---APTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAG 321 (368)
Q Consensus 245 ~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll---~P~~~i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~ 321 (368)
+..|++...+.+++=++.+++.+...+..... .|.....+.+.++..++..+.++|+..++.+.-...+..
T Consensus 114 HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~------ 187 (340)
T PF12794_consen 114 HFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQP------ 187 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccC------
Confidence 56888999999999999988876555532222 233345566777777777778888888777643222222
Q ss_pred cchHHHHHHHHHHHHHHHHHH-HHHHHHHcCCchhHH
Q 017626 322 LDREKMLALDRISSVGLFVIG-LMALAEACGVAVQSI 357 (368)
Q Consensus 322 ~D~t~v~~LsKvlrivIiiIG-vL~ILq~lGVnVTaL 357 (368)
.++.....+.++...++++.- +++++-.+||--|++
T Consensus 188 ~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~ 224 (340)
T PF12794_consen 188 KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTAL 224 (340)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 122234555555555544443 344445567766653
No 12
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=74.84 E-value=6.5 Score=29.02 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchH
Q 017626 282 ASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDRE 325 (368)
Q Consensus 282 i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t 325 (368)
+..|++++...++|+.++|++.|++..+.++.+.+. +.|++
T Consensus 11 ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~---~~d~~ 51 (53)
T PF05552_consen 11 IIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKR---GVDKT 51 (53)
T ss_dssp --GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence 345788999999999999999999999999888764 45554
No 13
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=69.78 E-value=70 Score=27.29 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=38.4
Q ss_pred HHHHHHhhcCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHH
Q 017626 185 PQIEQLLDAHP-YLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYL 263 (368)
Q Consensus 185 P~~q~~l~~~~-~L~~wlI~Lliilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~l 263 (368)
|.+.++++.+. ...+.+.....+++..++.+++.+.+.+.+++..++. ...+-|.+..++=.-++.+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~iaf~~~f~~~~~i~~~i~~~l~~~~~~~------------~~~~~dr~lG~~~G~~~~~ 110 (146)
T PF02674_consen 43 PPLAPFLSNYFSSLSPPFANIIAFIILFVLVYIIVRIIGKLLRRIVKKP------------FLGWLDRLLGALLGLAKGL 110 (146)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------cccHHHHHHHHHHHHHHHH
Confidence 44444444321 2233334444445555555666666667777766666 5556666666666666555
Q ss_pred HHHH
Q 017626 264 ITFM 267 (368)
Q Consensus 264 I~~i 267 (368)
+.+.
T Consensus 111 li~~ 114 (146)
T PF02674_consen 111 LILS 114 (146)
T ss_pred HHHH
Confidence 5554
No 14
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=69.08 E-value=1.2e+02 Score=31.09 Aligned_cols=92 Identities=13% Similarity=0.262 Sum_probs=46.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHH
Q 017626 194 HPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIG 273 (368)
Q Consensus 194 ~~~L~~wlI~Lliilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa 273 (368)
++++..++.++..++++..+...+. ...++++...+|. +..+.+..++.--+.+++..+...-.
T Consensus 39 n~~v~~ligai~~~li~~~~~~~~~-~~~~~le~~i~k~--------------~~~~ilf~tiGLiiGLlia~l~~~pL- 102 (356)
T COG4956 39 NEYVDALIGAIIFFLISFWFGKYVL-NWLKRLEEQIRKL--------------PVTTILFGTIGLIIGLLIAVLLSSPL- 102 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhc--------------CHHHHHHHHHHHHHHHHHHHHHhhHH-
Confidence 5566656555555555555544444 3456677777666 45566665544433322222111100
Q ss_pred HHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 274 MMVAPTTIASQYLAQAWRGAVILSFVWFLHRWK 306 (368)
Q Consensus 274 ~ll~P~~~i~~~l~~i~~iaiIl~i~Wfl~Rlv 306 (368)
...|. .+++.+..+.+.+.++++.+++.
T Consensus 103 -~~~~i----p~~~~ii~vi~t~il~y~G~~~~ 130 (356)
T COG4956 103 -FLLPI----PFISTIIPVILTIILAYFGFQLA 130 (356)
T ss_pred -hhCCc----cHHHhHHHHHHHHHHHHHhhHHh
Confidence 11222 25566666666666677666554
No 15
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=66.99 E-value=2.3e+02 Score=32.14 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CchhH
Q 017626 326 KMLALDRISSVGLFVIGLMALAEACG-VAVQS 356 (368)
Q Consensus 326 ~v~~LsKvlrivIiiIGvL~ILq~lG-VnVTa 356 (368)
..+.+.++++.+++++.++.+++.|| ++...
T Consensus 422 ~~~~~l~~lr~l~~~~~vl~ll~a~~~l~l~~ 453 (741)
T PRK11465 422 WLSAALKTARILTVCVAVMLLLNAWGLFDFWN 453 (741)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence 34566777777788888888888888 35554
No 16
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=64.69 E-value=75 Score=37.39 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=26.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626 321 GLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (368)
Q Consensus 321 ~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG 364 (368)
+.++..+..+.|-.+..+|++.-+++...++.+...-++...+|
T Consensus 589 ~w~~~~v~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lg 632 (1109)
T PRK10929 589 GWPRERVARAMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLG 632 (1109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHH
Confidence 45677778777877777777666666555544443344443443
No 17
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=61.17 E-value=26 Score=25.78 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017626 199 DVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (368)
Q Consensus 199 ~wlI~Lliilia~lla~lv~r~VlrrL~k~a~kT 232 (368)
+.+.+++++++|..++.++. +.++|..++.
T Consensus 17 ~iv~AilIl~vG~~va~~v~----~~~~~~l~~~ 46 (53)
T PF05552_consen 17 NIVGAILILIVGWWVAKFVR----KLVRRLLEKR 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHc
Confidence 44445555555554444444 4555555555
No 18
>PRK10845 colicin V production protein; Provisional
Probab=59.39 E-value=1.4e+02 Score=27.02 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 017626 287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEAC 350 (368)
Q Consensus 287 ~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~l 350 (368)
......++++.++|+..+++..+.....+...-...| .....+--++|-.+++..++.+++.+
T Consensus 61 ~~~~af~~iFi~v~~~~~i~~~~l~~l~~~~~Lg~~d-r~lG~ifG~~rg~liv~v~l~~l~~~ 123 (162)
T PRK10845 61 RNGIAIAVLFIATLIVGAIVNYVIGQLVEKTGLSGTD-RVLGVCFGALRGVLIVAAILFFLDTF 123 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456677788888888887777776543212333 45666667777777777777676654
No 19
>PRK13892 conjugal transfer protein TrbC; Provisional
Probab=49.30 E-value=78 Score=28.44 Aligned_cols=65 Identities=11% Similarity=0.246 Sum_probs=46.8
Q ss_pred CCcch---HHHHHHhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 245 QVPYE---KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNV 309 (368)
Q Consensus 245 ~~~~D---d~Ll~ALe~Plr~lI~~ig~~laa~ll~P~~~i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~ 309 (368)
..+|| +.+.+++..|+-..+-++++..+...+.-......+..++..+++.+++.....++...+
T Consensus 43 glPWE~pL~~I~~SitGPVA~~isvI~Iv~aG~~LaFGge~~gf~R~li~vVl~lsi~~~A~n~~~~f 110 (134)
T PRK13892 43 SLPYESWLTNLRNSVTGPVAFALSIIGIVVAGGILIFGGELNGFFRTLIFIVLVMALLVGAQNMMSTF 110 (134)
T ss_pred CCCchhHHHHHHHHhhchHHHHHHHHHHHHhChHhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665 578899999999999999998854333222224567788888888888887777776655
No 20
>PRK01844 hypothetical protein; Provisional
Probab=36.02 E-value=93 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 017626 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGP 233 (368)
Q Consensus 202 I~Lliilia~lla~lv~r~VlrrL~k~a~kT~ 233 (368)
+.++.++++.++..++.| +.++++.++.|
T Consensus 9 l~I~~li~G~~~Gff~ar---k~~~k~lk~NP 37 (72)
T PRK01844 9 VGVVALVAGVALGFFIAR---KYMMNYLQKNP 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHCC
Confidence 344455556656555554 55677777773
No 21
>COG1279 Lysine efflux permease [General function prediction only]
Probab=35.78 E-value=2.2e+02 Score=27.22 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 017626 251 SFWGALEDPVRYLITFMAFVQI 272 (368)
Q Consensus 251 ~Ll~ALe~Plr~lI~~ig~~la 272 (368)
..|+-+..-....+|.++++++
T Consensus 178 k~~riin~vva~vM~~ia~~L~ 199 (202)
T COG1279 178 KAWRIINLVVAVVMWALAVKLA 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777888888764
No 22
>PRK11677 hypothetical protein; Provisional
Probab=35.61 E-value=40 Score=30.11 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 199 DVIVPVSCYLTGTVLAWVVMPRVLRR 224 (368)
Q Consensus 199 ~wlI~Lliilia~lla~lv~r~Vlrr 224 (368)
.|+++++.+++|+++++++.|+.-+.
T Consensus 2 ~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 2 TWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccch
Confidence 38888889999999999998765544
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=34.99 E-value=33 Score=29.63 Aligned_cols=17 Identities=0% Similarity=-0.005 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017626 200 VIVPVSCYLTGTVLAWV 216 (368)
Q Consensus 200 wlI~Lliilia~lla~l 216 (368)
|++.++++++++++..+
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 55555444444444333
No 24
>PHA01399 membrane protein P6
Probab=34.61 E-value=1.9e+02 Score=27.71 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=39.4
Q ss_pred hhhhhhhhhccchhhhhhhhhhhhhchHHHHH---HhhcC-----chhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 158 FDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQ---LLDAH-----PYLRDVI---VPVSCYLTGTVLAWVVMPRVLRRFH 226 (368)
Q Consensus 158 ~~~~~~~~~~~~~a~~~~~~~~~d~~lP~~q~---~l~~~-----~~L~~wl---I~Lliilia~lla~lv~r~VlrrL~ 226 (368)
+.++|.+-++.+|++-.-.++++|.+..-+.. ..++- ....... -.++++++..+.+|++.+.+...++
T Consensus 4 fks~kk~~k~vv~~vvkvvk~vv~~~v~~ika~vk~ikkivsvi~~fiskifs~ig~il~~il~~~~awf~fpa~IAIIK 83 (242)
T PHA01399 4 FKSIKKAIKKVVDAVVKVVKAVVDAIVKAIKAIVKIIKKIVSVILDFISKIFSKIGIILIIILIIIAAWFFFPAFAAFLQ 83 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999888888876665533222 11110 0111111 1222344455667888887776666
Q ss_pred H
Q 017626 227 K 227 (368)
Q Consensus 227 k 227 (368)
.
T Consensus 84 N 84 (242)
T PHA01399 84 S 84 (242)
T ss_pred H
Confidence 5
No 25
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=33.98 E-value=5.6e+02 Score=28.79 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhcccc
Q 017626 322 LDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG 365 (368)
Q Consensus 322 ~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIGG 365 (368)
...+...++.++..+++..+|+.++++. .+.++.++|+-.+.|
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~-~lTlG~LiAf~~l~~ 420 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEG-ELTLGQLVAFNMLAG 420 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH
Confidence 3466788899999999999999999998 899999999877654
No 26
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=30.54 E-value=96 Score=24.55 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017626 203 PVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (368)
Q Consensus 203 ~Lliilia~lla~lv~r~VlrrL~k~a~kT 232 (368)
.++.++++.++++++.| +.++++.++.
T Consensus 3 iilali~G~~~Gff~ar---~~~~k~l~~N 29 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR---KYMEKQLKEN 29 (64)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHC
Confidence 34455667777777665 4566677766
No 27
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.28 E-value=70 Score=26.03 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=30.3
Q ss_pred ccchhhhhhhhhhhhhchHHH------HHH---hhcCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 017626 167 SVVDGVSYTGQKAKDELSPQI------EQL---LDAHPYLRDVIVPVSCYLTGTVLAWVVMPR 220 (368)
Q Consensus 167 ~~~~a~~~~~~~~~d~~lP~~------q~~---l~~~~~L~~wlI~Lliilia~lla~lv~r~ 220 (368)
..++..+++.+++.|++-.+- .++ +++......+++.+++.++...++|++.|+
T Consensus 29 ~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~~rR 91 (92)
T PF03908_consen 29 QTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYILWRR 91 (92)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc
Confidence 445666666666533333211 111 222334456777777777777788887754
No 28
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=28.90 E-value=3.1e+02 Score=22.96 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017626 202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (368)
Q Consensus 202 I~Lliilia~lla~lv~r~VlrrL~k~a~kT 232 (368)
..+++++++.++...+.+.+++++.+...|-
T Consensus 4 ~l~~i~~iG~l~~~~~g~~l~~~~e~ll~ri 34 (108)
T PF04367_consen 4 LLLLIFLIGLLARNYFGKWLLNWLERLLQRI 34 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455667777777777777778887777766
No 29
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=28.86 E-value=1.1e+02 Score=24.39 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=21.4
Q ss_pred hhhhhhhhccchhhhhhhhhh------hhhchHHHHHHhh
Q 017626 159 DKIKDAWKSVVDGVSYTGQKA------KDELSPQIEQLLD 192 (368)
Q Consensus 159 ~~~~~~~~~~~~a~~~~~~~~------~d~~lP~~q~~l~ 192 (368)
+..++.-...+|-.-++|+++ ++++.-..++|-.
T Consensus 13 ~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k 52 (89)
T PF00957_consen 13 EEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKK 52 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHH
Confidence 445566667778888888885 5555555555443
No 30
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.51 E-value=86 Score=28.20 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=24.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 195 PYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHK 227 (368)
Q Consensus 195 ~~L~~wlI~Lliilia~lla~lv~r~VlrrL~k 227 (368)
+...-|..+++.+++|++++.+++|+.-+.++.
T Consensus 3 wt~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 3 WTFMTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 345678888888999999999998766555433
No 31
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=26.84 E-value=7.2e+02 Score=25.66 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017626 285 YLAQAWRGAVILSFVWFLHRWK 306 (368)
Q Consensus 285 ~l~~i~~iaiIl~i~Wfl~Rlv 306 (368)
.+.-+.-.+.++.+.|+.+|.+
T Consensus 239 ~lA~i~~~~~~~~~~~~~~~i~ 260 (438)
T PF06011_consen 239 VLAVILFALWIVLLGYFVFRII 260 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 3455555555566667776643
No 32
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=26.61 E-value=8.5e+02 Score=26.44 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=17.9
Q ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 017626 198 RDVIVPVSCYL-TGTVLAWVVMPRVLRRFHKYAIQ 231 (368)
Q Consensus 198 ~~wlI~Lliil-ia~lla~lv~r~VlrrL~k~a~k 231 (368)
.+|.......+ +..+..|+..|++..|+.++..+
T Consensus 202 ~N~yF~~aSt~~l~~v~~~vt~kivePrl~~~~~~ 236 (502)
T PF03806_consen 202 MNYYFMIASTFVLTIVGTWVTEKIVEPRLGKYDGD 236 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Confidence 45554444444 44444455565666777665544
No 33
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=25.95 E-value=1e+03 Score=27.21 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017626 330 LDRISSVGLFVIGLMALAEA 349 (368)
Q Consensus 330 LsKvlrivIiiIGvL~ILq~ 349 (368)
++-++-++..++|+-..|+.
T Consensus 203 L~~L~~~~~l~~a~~y~L~r 222 (774)
T PF03699_consen 203 LSILLALFFLLKAVGYWLDR 222 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555
No 34
>PRK12768 CysZ-like protein; Reviewed
Probab=24.75 E-value=6.5e+02 Score=24.42 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=7.2
Q ss_pred hhhhchHHHHHHhh
Q 017626 179 AKDELSPQIEQLLD 192 (368)
Q Consensus 179 ~~d~~lP~~q~~l~ 192 (368)
++|+++|.+.+|++
T Consensus 50 ~~~~~~~~~p~wl~ 63 (240)
T PRK12768 50 WAEQLLPGFPDWAG 63 (240)
T ss_pred HHHHHHhcCccHHH
Confidence 46666554444444
No 35
>PRK00523 hypothetical protein; Provisional
Probab=24.67 E-value=1.9e+02 Score=23.44 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 017626 206 CYLTGTVLAWVVMPRVLRRFHKYAIQG 232 (368)
Q Consensus 206 iilia~lla~lv~r~VlrrL~k~a~kT 232 (368)
.++++.++..++.| +.++++.++.
T Consensus 14 ~li~G~~~Gffiar---k~~~k~l~~N 37 (72)
T PRK00523 14 LLIVGGIIGYFVSK---KMFKKQIREN 37 (72)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHC
Confidence 34445555555443 5567777776
No 36
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=22.54 E-value=5.4e+02 Score=22.74 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=43.7
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHH
Q 017626 247 PYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREK 326 (368)
Q Consensus 247 ~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~P~~~i~~~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~ 326 (368)
.+-+-++-++-.|-.++.|+..+...... +.. ...........++..+.|+..=.. ...+..++ .....
T Consensus 100 ~f~~g~~~~~~NPk~il~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~-----~~~~~ 168 (191)
T PF01810_consen 100 SFLTGFLLNLLNPKAILFWLAVFPQFISP--EYS--STQFLVFILGIFLGSLLWFLLLAL--LGSRLRRK-----FSSRR 168 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccCc--ccc--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HhhhH
Confidence 45556666677888766555444332211 111 111122223334444455432111 11111111 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 017626 327 MLALDRISSVGLFVIGLMALAE 348 (368)
Q Consensus 327 v~~LsKvlrivIiiIGvL~ILq 348 (368)
...+.++.-++++.+|+.++.+
T Consensus 169 ~~~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 169 IRWINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3388888999999998887764
No 37
>COG5521 Predicted integral membrane protein [Function unknown]
Probab=21.08 E-value=6.7e+02 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=23.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 017626 250 KSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLH 303 (368)
Q Consensus 250 d~Ll~ALe~Plr~lI~~ig~~laa~ll~P~~~i~~~l~~i~~iaiIl~i~Wfl~ 303 (368)
...++++.-|.-.++.+--+++ .+ ..+-.+-...+++.++|.++
T Consensus 221 ~l~lnclalP~laa~algff~q-----d~-----ttim~vqs~g~vLml~w~Fy 264 (275)
T COG5521 221 SLALNCLALPALAAAALGFFHQ-----DL-----TTIMMVQSCGVVLMLSWAFY 264 (275)
T ss_pred HHHHHhhhhHHHHHHHHHHHhh-----cH-----HHHHHHHHHHHHHHHHHHHh
Confidence 4677888888754433322222 11 11233335666777888774
No 38
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.77 E-value=3e+02 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=11.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017626 196 YLRDVIVPVSCYLTGTVLAWVVMPRV 221 (368)
Q Consensus 196 ~L~~wlI~Lliilia~lla~lv~r~V 221 (368)
|++..++.... ++.....|++.|..
T Consensus 9 YlqgL~ls~i~-V~~~~~~wi~~Ra~ 33 (72)
T PF13268_consen 9 YLQGLLLSSIL-VLLVSGIWILWRAL 33 (72)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45554444432 33333457766433
Done!