Query 017626
Match_columns 368
No_of_seqs 167 out of 441
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vv5_A MSCS, small-conductance 98.5 1.8E-07 6E-12 89.3 7.5 80 285-367 27-106 (286)
2 3udc_A Small-conductance mecha 98.2 4.3E-06 1.5E-10 79.6 10.1 80 288-367 20-105 (285)
3 2vv5_A MSCS, small-conductance 85.7 8 0.00027 36.3 11.9 58 206-277 33-90 (286)
4 3udc_A Small-conductance mecha 70.8 67 0.0023 29.8 15.9 68 201-276 21-88 (285)
5 3tx3_A Uncharacterized protein 53.0 1.4E+02 0.0048 27.5 14.8 41 306-349 178-218 (249)
6 3hd7_A Vesicle-associated memb 31.6 58 0.002 25.6 4.5 35 158-192 14-54 (91)
7 2kog_A Vesicle-associated memb 28.8 30 0.001 28.8 2.5 33 158-190 42-80 (119)
8 2f95_B Sensory rhodopsin II tr 6.4 2.1E+02 0.0073 22.5 1.8 27 204-230 66-92 (163)
9 4ex8_A ALNA; alpha/beta/alpha- 5.8 1.6E+02 0.0054 28.7 0.7 20 344-366 120-139 (316)
10 2jo1_A Phospholemman; FXYD1, N 5.7 7.5E+02 0.026 19.0 4.3 28 322-349 11-38 (72)
No 1
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=98.49 E-value=1.8e-07 Score=89.31 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhhccc
Q 017626 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG 364 (368)
Q Consensus 285 ~l~~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgLGIG 364 (368)
++.++...++++.++|++.|++..+..++..+. +.|++..+++.+++++++++++++++|+.+|+++++++|++|++
T Consensus 27 ~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~ 103 (286)
T 2vv5_A 27 YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAA 103 (286)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456777888888999999999998888777653 57889999999999999999999999999999999999999999
Q ss_pred ccc
Q 017626 365 GWI 367 (368)
Q Consensus 365 GIA 367 (368)
|+|
T Consensus 104 g~a 106 (286)
T 2vv5_A 104 GLV 106 (286)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 2
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=98.23 E-value=4.3e-06 Score=79.60 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHhhh
Q 017626 288 QAWRGAVILSFVWFLHRWKTNVFTRAMAS----QS--IAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVG 361 (368)
Q Consensus 288 ~i~~iaiIl~i~Wfl~Rlv~~~~~~ll~~----~~--~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~lGVnVTaLLAgL 361 (368)
....++.++.+.|+..++.+.+...+... +. ..+.+++..+++.+++++++++++++++|+.+|+++++++|++
T Consensus 20 ~~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~ 99 (285)
T 3udc_A 20 FLLDVLKILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVA 99 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33344444455555555555444444332 11 1233467889999999999999999999999999999999999
Q ss_pred cccccc
Q 017626 362 GIGGWI 367 (368)
Q Consensus 362 GIGGIA 367 (368)
|++|+|
T Consensus 100 g~~g~a 105 (285)
T 3udc_A 100 GIGSLA 105 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
No 3
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=85.72 E-value=8 Score=36.27 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Q 017626 206 CYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVA 277 (368)
Q Consensus 206 iilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll~ 277 (368)
.+++..+++|++.+.+.+.+.++.++. ..|..+...+.+-++++++++++..+...+.
T Consensus 33 ~~~~i~~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~g 90 (286)
T 2vv5_A 33 AALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRVG 90 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444445555555555555555544 2456777888899999999988888766553
No 4
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=70.82 E-value=67 Score=29.80 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccCcCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017626 201 IVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV 276 (368)
Q Consensus 201 lI~Lliilia~lla~lv~r~VlrrL~k~a~kT~~~~l~~~~~~~~~~~Dd~Ll~ALe~Plr~lI~~ig~~laa~ll 276 (368)
+..++.+++...+.+.+.+.+.+++.+...+. ....+...++.+...+++-++++++++++..+...+
T Consensus 21 ~~~il~~lii~~i~~~i~~~l~~~~~~~~~~~--------~~~~~~~~~~tl~~~~~~~~~~~i~~~~~~~~l~~~ 88 (285)
T 3udc_A 21 LLDVLKILIIAFIGIKFADFLIYRFYKLYSKS--------KIQLPQRKIDTLTSLTKNAVRYIIYFLAGASILKLF 88 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--------CSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344334444444445555555555544 001122344667778888899999998888876655
No 5
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=53.05 E-value=1.4e+02 Score=27.54 Aligned_cols=41 Identities=7% Similarity=-0.009 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 306 KTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEA 349 (368)
Q Consensus 306 v~~~~~~ll~~~~~~~~D~t~v~~LsKvlrivIiiIGvL~ILq~ 349 (368)
-..+.++..+++ +.+.....-..|--|...+..|+.+.+-.
T Consensus 178 g~ey~d~~~~r~---~~~~~~~~~~lr~~r~~~~~fG~~~~ll~ 218 (249)
T 3tx3_A 178 SIQYLDYPFDNH---KLSFPRMRSELHQQRSKTLGFGFGVTVLT 218 (249)
T ss_dssp HHHHHHHHHHHT---TCCHHHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555543 23333333333445566666666655544
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=31.57 E-value=58 Score=25.64 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=23.7
Q ss_pred hhhhhhhhhccchhhhhhhhhh------hhhchHHHHHHhh
Q 017626 158 FDKIKDAWKSVVDGVSYTGQKA------KDELSPQIEQLLD 192 (368)
Q Consensus 158 ~~~~~~~~~~~~~a~~~~~~~~------~d~~lP~~q~~l~ 192 (368)
+|..+++-+..+|-+-++|+|+ +|++-...++|-.
T Consensus 14 v~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~ 54 (91)
T 3hd7_A 14 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFET 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777788888888885 6666666555443
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=28.85 E-value=30 Score=28.82 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=22.4
Q ss_pred hhhhhhhhhccchhhhhhhhhh------hhhchHHHHHH
Q 017626 158 FDKIKDAWKSVVDGVSYTGQKA------KDELSPQIEQL 190 (368)
Q Consensus 158 ~~~~~~~~~~~~~a~~~~~~~~------~d~~lP~~q~~ 190 (368)
+|..+++-+..+|.+-++|+|+ +|++--..++|
T Consensus 42 vdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F 80 (119)
T 2kog_A 42 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQF 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 5666677777788888888885 56665444443
No 8
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=6.38 E-value=2.1e+02 Score=22.54 Aligned_cols=27 Identities=7% Similarity=-0.076 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017626 204 VSCYLTGTVLAWVVMPRVLRRFHKYAI 230 (368)
Q Consensus 204 Lliilia~lla~lv~r~VlrrL~k~a~ 230 (368)
++.++++.++.+++.+.+.+.+++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~i~~pl~~l~~ 92 (163)
T 2f95_B 66 ILLGINLGLVAATLGGDTAASLSTLAA 92 (163)
T ss_dssp HHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666666555544
No 9
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=5.78 E-value=1.6e+02 Score=28.67 Aligned_cols=20 Identities=40% Similarity=0.841 Sum_probs=13.0
Q ss_pred HHHHHHcCCchhHHHhhhccccc
Q 017626 344 MALAEACGVAVQSILTVGGIGGW 366 (368)
Q Consensus 344 L~ILq~lGVnVTaLLAgLGIGGI 366 (368)
|.+..--|| .+.|.+||||+
T Consensus 120 m~lA~~AGI---~VFaTGGiGGV 139 (316)
T 4ex8_A 120 IVIAERAGI---QVFTTAGIGGV 139 (316)
T ss_dssp HHHHHHHTC---CEEECSCBCCB
T ss_pred HHHHHHCCC---cEEEeCCcccc
Confidence 344444577 66777888875
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=5.70 E-value=7.5e+02 Score=18.97 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017626 322 LDREKMLALDRISSVGLFVIGLMALAEA 349 (368)
Q Consensus 322 ~D~t~v~~LsKvlrivIiiIGvL~ILq~ 349 (368)
.|-++++.-.-+.-.+++++|++++++.
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcC
Confidence 4667788888888889999999999875
Done!